Query psy13271
Match_columns 110
No_of_seqs 172 out of 1143
Neff 9.0
Searched_HMMs 46136
Date Sat Aug 17 00:31:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0332 FabH 3-oxoacyl-[acyl-c 99.8 2.5E-20 5.4E-25 132.3 9.9 99 6-104 48-150 (323)
2 PRK08235 acetyl-CoA acetyltran 99.8 3.5E-19 7.5E-24 129.9 11.8 102 1-102 14-123 (393)
3 PF00108 Thiolase_N: Thiolase, 99.8 2.6E-19 5.7E-24 124.6 10.6 98 6-104 22-125 (264)
4 PRK05656 acetyl-CoA acetyltran 99.8 9E-19 2E-23 127.7 12.3 102 1-102 14-123 (393)
5 PRK07108 acetyl-CoA acetyltran 99.8 9.6E-19 2.1E-23 127.5 11.9 97 6-102 23-125 (392)
6 PRK09051 beta-ketothiolase; Pr 99.8 1.6E-18 3.4E-23 126.5 12.2 97 6-102 23-125 (394)
7 PRK07850 acetyl-CoA acetyltran 99.8 1.7E-18 3.7E-23 126.0 12.1 102 1-102 14-124 (387)
8 PRK06205 acetyl-CoA acetyltran 99.8 1.7E-18 3.7E-23 126.7 11.6 102 1-102 14-123 (404)
9 PRK12578 acetyl-CoA acetyltran 99.8 2.4E-18 5.1E-23 125.2 12.1 101 1-102 13-117 (385)
10 PRK08242 acetyl-CoA acetyltran 99.8 2.9E-18 6.4E-23 125.3 12.5 97 6-102 24-126 (402)
11 cd00751 thiolase Thiolase are 99.8 2.4E-18 5.2E-23 125.2 11.3 102 1-102 10-119 (386)
12 PRK08131 acetyl-CoA acetyltran 99.8 3E-18 6.6E-23 125.2 11.8 102 1-102 14-124 (401)
13 PRK09052 acetyl-CoA acetyltran 99.8 3.3E-18 7.2E-23 125.0 11.9 97 6-102 27-130 (399)
14 PRK08963 fadI 3-ketoacyl-CoA t 99.8 4.6E-18 1E-22 125.2 11.4 102 1-102 17-126 (428)
15 PRK06157 acetyl-CoA acetyltran 99.8 7.3E-18 1.6E-22 123.1 12.1 101 1-102 19-123 (398)
16 PRK13359 beta-ketoadipyl CoA t 99.8 9.9E-18 2.1E-22 122.5 12.3 102 1-102 14-125 (400)
17 PRK06954 acetyl-CoA acetyltran 99.8 1E-17 2.3E-22 122.3 12.1 101 1-102 19-128 (397)
18 TIGR02446 FadI fatty oxidation 99.8 6.1E-18 1.3E-22 124.6 11.0 101 1-102 19-128 (430)
19 PRK06504 acetyl-CoA acetyltran 99.8 1.8E-17 4E-22 120.8 11.8 102 1-102 14-124 (390)
20 PRK06633 acetyl-CoA acetyltran 99.8 1.3E-17 2.7E-22 121.7 10.8 97 6-102 23-124 (392)
21 cd00829 SCP-x_thiolase Thiolas 99.8 2.1E-17 4.5E-22 119.5 11.9 100 1-101 8-111 (375)
22 TIGR01930 AcCoA-C-Actrans acet 99.7 2.4E-17 5.1E-22 120.1 12.1 96 7-102 18-118 (386)
23 PRK09050 beta-ketoadipyl CoA t 99.7 1.8E-17 4E-22 121.1 11.5 102 1-102 14-125 (401)
24 TIGR02845 spore_V_AD stage V s 99.7 2.6E-17 5.6E-22 116.3 11.8 94 2-98 42-136 (327)
25 PRK08256 lipid-transfer protei 99.7 2.3E-17 5E-22 120.3 11.9 101 1-101 13-114 (391)
26 PLN02287 3-ketoacyl-CoA thiola 99.7 2.6E-17 5.6E-22 121.9 11.9 97 6-102 67-169 (452)
27 PRK07661 acetyl-CoA acetyltran 99.7 2.4E-17 5.2E-22 120.2 11.5 96 7-102 24-125 (391)
28 PRK05790 putative acyltransfer 99.7 3.6E-17 7.8E-22 119.3 12.3 102 1-102 14-123 (393)
29 TIGR02430 pcaF beta-ketoadipyl 99.7 2.7E-17 5.8E-22 120.2 11.6 102 1-102 13-124 (400)
30 PTZ00455 3-ketoacyl-CoA thiola 99.7 3E-17 6.6E-22 121.1 11.8 97 6-102 44-155 (438)
31 PRK08313 acetyl-CoA acetyltran 99.7 3.6E-17 7.8E-22 119.1 11.9 97 2-100 17-119 (386)
32 PRK06366 acetyl-CoA acetyltran 99.7 4E-17 8.7E-22 118.9 12.0 102 1-102 14-123 (388)
33 PRK07516 acetyl-CoA acetyltran 99.7 3.9E-17 8.5E-22 119.0 11.4 101 1-102 14-120 (389)
34 PRK08170 acetyl-CoA acetyltran 99.7 4.5E-17 9.7E-22 119.9 11.8 102 1-102 15-124 (426)
35 cd00826 nondecarbox_cond_enzym 99.7 5.2E-17 1.1E-21 118.5 12.0 95 7-101 20-119 (393)
36 PRK07851 acetyl-CoA acetyltran 99.7 3.8E-17 8.2E-22 119.7 11.2 96 6-101 23-124 (406)
37 PRK06289 acetyl-CoA acetyltran 99.7 4.7E-17 1E-21 119.0 11.6 102 1-102 15-125 (403)
38 PRK08304 stage V sporulation p 99.7 3.8E-17 8.3E-22 115.8 10.6 100 1-103 47-147 (337)
39 PRK06064 acetyl-CoA acetyltran 99.7 5.8E-17 1.3E-21 118.0 11.8 100 1-101 14-119 (389)
40 CHL00203 fabH 3-oxoacyl-acyl-c 99.7 6.5E-17 1.4E-21 115.2 11.8 96 6-101 47-145 (326)
41 PRK06365 acetyl-CoA acetyltran 99.7 7.4E-17 1.6E-21 118.9 12.1 102 1-102 28-134 (430)
42 PRK06065 acetyl-CoA acetyltran 99.7 1.2E-16 2.5E-21 116.7 11.9 97 1-99 21-123 (392)
43 PRK12879 3-oxoacyl-(acyl carri 99.7 1.6E-16 3.4E-21 112.9 11.9 96 6-101 49-148 (325)
44 PRK06059 lipid-transfer protei 99.7 1.2E-16 2.5E-21 116.8 11.5 97 1-99 16-117 (399)
45 PRK06816 3-oxoacyl-(acyl carri 99.7 1.1E-16 2.4E-21 116.2 11.2 94 8-101 61-158 (378)
46 PLN02326 3-oxoacyl-[acyl-carri 99.7 1.6E-16 3.4E-21 115.5 11.8 97 6-102 92-191 (379)
47 PRK05963 3-oxoacyl-(acyl carri 99.7 1.6E-16 3.5E-21 113.0 11.2 96 6-101 48-146 (326)
48 PRK12880 3-oxoacyl-(acyl carri 99.7 1.4E-16 3.1E-21 114.8 10.9 97 6-103 56-157 (353)
49 PRK09258 3-oxoacyl-(acyl carri 99.7 1.3E-16 2.9E-21 113.9 10.6 95 6-100 57-156 (338)
50 PRK09352 3-oxoacyl-(acyl carri 99.7 2.3E-16 5E-21 111.7 11.6 95 6-100 48-146 (319)
51 PLN02644 acetyl-CoA C-acetyltr 99.7 3.1E-16 6.7E-21 114.5 12.2 102 1-102 13-122 (394)
52 TIGR00748 HMG_CoA_syn_Arc hydr 99.7 1.8E-16 4E-21 113.9 10.5 94 6-99 46-144 (345)
53 PRK09268 acetyl-CoA acetyltran 99.7 3.5E-16 7.7E-21 115.2 12.2 102 1-102 19-128 (427)
54 PRK07204 3-oxoacyl-(acyl carri 99.7 3.6E-16 7.7E-21 111.4 11.6 94 7-100 49-148 (329)
55 TIGR00747 fabH 3-oxoacyl-(acyl 99.7 3.4E-16 7.4E-21 110.9 11.3 95 6-100 47-145 (318)
56 PRK06025 acetyl-CoA acetyltran 99.7 3.8E-16 8.2E-21 114.4 11.3 97 6-102 25-127 (417)
57 PRK06445 acetyl-CoA acetyltran 99.7 3.5E-16 7.6E-21 114.2 10.9 97 6-102 28-130 (394)
58 TIGR02445 fadA fatty oxidation 99.7 2E-16 4.4E-21 115.2 8.9 98 6-103 21-125 (385)
59 cd00830 KAS_III Ketoacyl-acyl 99.7 7.6E-16 1.6E-20 108.9 11.5 96 6-101 46-145 (320)
60 PRK08947 fadA 3-ketoacyl-CoA t 99.7 6.1E-16 1.3E-20 112.8 11.1 97 6-102 23-126 (387)
61 PRK06158 thiolase; Provisional 99.7 6.1E-16 1.3E-20 112.6 10.3 96 1-98 20-117 (384)
62 cd00827 init_cond_enzymes "ini 99.7 7.9E-16 1.7E-20 109.0 10.2 96 7-102 45-144 (324)
63 PRK07801 acetyl-CoA acetyltran 99.7 1.4E-15 3.1E-20 110.6 10.8 101 1-101 14-123 (382)
64 PLN03168 chalcone synthase; Pr 99.7 1.2E-15 2.6E-20 111.3 10.3 93 9-101 100-197 (389)
65 PLN02932 3-ketoacyl-CoA syntha 99.7 1.6E-15 3.6E-20 112.6 11.1 98 10-107 148-250 (478)
66 PRK04262 hypothetical protein; 99.7 1.2E-15 2.5E-20 109.7 10.0 92 6-97 47-143 (347)
67 PRK12404 stage V sporulation p 99.6 1.3E-15 2.9E-20 107.6 9.7 89 7-98 51-140 (334)
68 cd00327 cond_enzymes Condensin 99.6 2.9E-15 6.3E-20 102.7 10.7 89 8-96 5-97 (254)
69 PRK06690 acetyl-CoA acetyltran 99.6 3E-15 6.4E-20 108.3 11.2 99 1-102 13-117 (361)
70 PRK06840 hypothetical protein; 99.6 5E-15 1.1E-19 105.9 11.3 95 6-100 49-149 (339)
71 PRK07515 3-oxoacyl-(acyl carri 99.6 5.6E-15 1.2E-19 107.0 10.5 91 9-100 94-188 (372)
72 PRK08142 acetyl-CoA acetyltran 99.6 6.1E-15 1.3E-19 107.5 10.2 97 1-99 17-114 (388)
73 cd00831 CHS_like Chalcone and 99.6 3.4E-15 7.4E-20 107.7 8.7 91 9-99 84-179 (361)
74 PLN02377 3-ketoacyl-CoA syntha 99.6 9.5E-15 2.1E-19 109.1 11.3 98 9-107 171-274 (502)
75 PLN02577 hydroxymethylglutaryl 99.6 7E-15 1.5E-19 108.9 10.0 96 6-101 49-153 (459)
76 PLN03171 chalcone synthase-lik 99.6 8.4E-15 1.8E-19 107.2 10.3 94 8-101 106-204 (399)
77 PLN03169 chalcone synthase fam 99.6 8.5E-15 1.8E-19 106.9 8.7 92 7-99 103-200 (391)
78 PLN03170 chalcone synthase; Pr 99.6 1.1E-14 2.3E-19 106.6 9.1 92 10-101 106-202 (401)
79 PLN03172 chalcone synthase fam 99.6 4.4E-14 9.6E-19 103.2 11.0 90 10-99 102-196 (393)
80 PLN03173 chalcone synthase; Pr 99.6 4.2E-14 9E-19 103.3 10.2 90 10-99 102-196 (391)
81 PRK07855 lipid-transfer protei 99.6 7.1E-14 1.5E-18 101.9 11.1 91 1-94 16-108 (386)
82 PLN02192 3-ketoacyl-CoA syntha 99.6 6.2E-14 1.3E-18 104.8 10.9 96 10-106 176-277 (511)
83 cd00825 decarbox_cond_enzymes 99.5 5.3E-14 1.1E-18 99.8 9.9 90 10-100 11-129 (332)
84 KOG1406|consensus 99.5 2.1E-14 4.6E-19 99.3 6.6 97 6-102 25-122 (408)
85 TIGR01835 HMG-CoA-S_prok 3-hyd 99.5 1.3E-13 2.9E-18 100.3 10.9 90 6-97 45-139 (379)
86 PRK06066 acetyl-CoA acetyltran 99.5 2.5E-13 5.4E-18 99.1 11.6 96 1-99 16-117 (385)
87 TIGR01833 HMG-CoA-S_euk 3-hydr 99.5 1.6E-13 3.5E-18 101.6 10.7 91 6-96 46-145 (454)
88 COG0183 PaaJ Acetyl-CoA acetyl 99.5 1.1E-13 2.3E-18 101.2 8.9 102 1-103 14-128 (392)
89 PLN02854 3-ketoacyl-CoA syntha 99.5 2.3E-13 5E-18 102.0 10.7 95 12-107 190-290 (521)
90 PRK08257 acetyl-CoA acetyltran 99.5 3.6E-13 7.9E-18 101.0 11.7 93 8-100 25-122 (498)
91 smart00825 PKS_KS Beta-ketoacy 99.5 3.2E-13 6.9E-18 99.0 8.4 87 11-98 88-201 (424)
92 PLN00415 3-ketoacyl-CoA syntha 99.4 1.6E-12 3.4E-17 96.3 10.4 94 8-102 131-231 (466)
93 cd00834 KAS_I_II Beta-ketoacyl 99.4 1.1E-12 2.3E-17 95.6 9.0 89 9-98 70-192 (406)
94 KOG1390|consensus 99.4 8E-13 1.7E-17 93.1 7.8 99 6-105 26-130 (396)
95 KOG1391|consensus 99.4 4.4E-13 9.6E-18 92.5 6.4 106 1-106 19-130 (396)
96 PRK07314 3-oxoacyl-(acyl carri 99.4 2.5E-12 5.5E-17 94.1 9.6 89 9-98 71-193 (411)
97 cd00828 elong_cond_enzymes "el 99.4 2.9E-12 6.2E-17 93.6 9.4 89 9-98 71-193 (407)
98 PF08392 FAE1_CUT1_RppA: FAE1/ 99.4 4.8E-12 1E-16 88.6 10.0 98 11-108 84-186 (290)
99 PTZ00050 3-oxoacyl-acyl carrie 99.4 3.1E-12 6.7E-17 94.2 9.5 89 8-97 75-198 (421)
100 TIGR03150 fabF beta-ketoacyl-a 99.4 3.6E-12 7.7E-17 93.0 9.7 87 10-97 71-191 (407)
101 cd00833 PKS polyketide synthas 99.4 3.4E-12 7.4E-17 93.3 8.4 88 10-98 87-201 (421)
102 PRK06333 3-oxoacyl-(acyl carri 99.4 5.7E-12 1.2E-16 92.7 9.6 87 10-97 82-203 (424)
103 PF00195 Chal_sti_synt_N: Chal 99.3 1.9E-11 4.2E-16 83.2 10.5 90 10-99 100-194 (226)
104 PRK07937 lipid-transfer protei 99.3 1.7E-11 3.7E-16 88.6 10.2 94 1-99 14-115 (352)
105 PRK08439 3-oxoacyl-(acyl carri 99.3 1E-11 2.3E-16 91.1 9.1 86 10-96 72-191 (406)
106 PF00109 ketoacyl-synt: Beta-k 99.3 2.2E-11 4.7E-16 83.7 10.0 88 10-98 87-208 (254)
107 PRK08722 3-oxoacyl-(acyl carri 99.3 2.4E-11 5.3E-16 89.4 10.4 87 11-98 75-195 (414)
108 PLN02836 3-oxoacyl-[acyl-carri 99.3 2.6E-11 5.7E-16 89.7 10.1 87 9-96 92-213 (437)
109 PRK07967 3-oxoacyl-(acyl carri 99.3 3.6E-11 7.7E-16 88.4 9.8 88 10-98 71-193 (406)
110 PRK06147 3-oxoacyl-(acyl carri 99.3 5.2E-11 1.1E-15 85.9 9.5 92 8-99 63-165 (348)
111 PRK06519 3-oxoacyl-(acyl carri 99.2 7.1E-11 1.5E-15 86.6 9.7 86 10-96 73-204 (398)
112 COG3425 PksG 3-hydroxy-3-methy 99.2 3.4E-11 7.3E-16 86.9 7.7 93 6-98 47-144 (377)
113 PRK14691 3-oxoacyl-(acyl carri 99.2 1.6E-10 3.4E-15 83.3 9.5 87 9-97 3-121 (342)
114 PLN02787 3-oxoacyl-[acyl-carri 99.2 1.5E-10 3.3E-15 87.6 9.4 85 11-96 200-320 (540)
115 PRK09116 3-oxoacyl-(acyl carri 99.2 1.7E-10 3.6E-15 84.8 9.1 88 10-98 73-195 (405)
116 PRK07103 polyketide beta-ketoa 99.2 2.7E-10 5.8E-15 83.8 9.2 86 10-96 80-196 (410)
117 PF01154 HMG_CoA_synt_N: Hydro 99.1 3.3E-10 7.2E-15 74.2 8.1 92 6-97 49-149 (174)
118 cd00832 CLF Chain-length facto 99.1 7.3E-10 1.6E-14 81.3 9.8 86 10-96 71-189 (399)
119 PRK06501 3-oxoacyl-(acyl carri 99.1 1.3E-09 2.9E-14 80.5 10.1 47 49-96 157-204 (425)
120 COG3321 Polyketide synthase mo 99.1 3.4E-10 7.4E-15 91.2 7.5 85 12-97 93-204 (1061)
121 PRK07910 3-oxoacyl-(acyl carri 99.1 1.6E-09 3.4E-14 80.0 10.3 86 11-97 84-201 (418)
122 PRK05952 3-oxoacyl-(acyl carri 99.0 1.5E-09 3.2E-14 79.3 8.7 84 12-96 58-175 (381)
123 COG3424 BcsA Predicted naringe 99.0 1.6E-09 3.4E-14 76.4 8.4 89 10-98 76-169 (356)
124 COG0304 FabB 3-oxoacyl-(acyl-c 99.0 2.4E-09 5.3E-14 78.7 8.8 88 8-96 69-191 (412)
125 KOG1389|consensus 99.0 1.6E-09 3.4E-14 76.7 7.3 95 6-100 57-156 (435)
126 KOG1392|consensus 99.0 4.4E-10 9.5E-15 79.0 3.7 99 6-105 62-166 (465)
127 TIGR02813 omega_3_PfaA polyket 99.0 4E-09 8.7E-14 90.6 9.6 47 49-96 188-235 (2582)
128 KOG1394|consensus 99.0 1.1E-09 2.4E-14 78.5 5.1 87 9-96 93-216 (440)
129 PF07451 SpoVAD: Stage V sporu 98.9 3E-08 6.4E-13 70.0 10.6 84 12-98 53-137 (329)
130 PRK09185 3-oxoacyl-(acyl carri 98.7 1.9E-07 4.2E-12 68.4 9.8 50 49-99 142-192 (392)
131 PF08545 ACP_syn_III: 3-Oxoacy 98.6 8.2E-08 1.8E-12 55.5 5.1 39 62-100 1-40 (80)
132 KOG1202|consensus 98.5 9.5E-08 2.1E-12 77.3 4.4 88 9-97 86-200 (2376)
133 PF13723 Ketoacyl-synt_2: Beta 97.3 0.0063 1.4E-07 41.6 9.7 91 9-104 33-150 (218)
134 KOG1393|consensus 97.0 0.004 8.8E-08 45.7 7.1 90 7-96 57-155 (462)
135 PF08541 ACP_syn_III_C: 3-Oxoa 96.0 0.022 4.7E-07 33.1 4.7 71 22-95 1-78 (90)
136 PRK06147 3-oxoacyl-(acyl carri 95.6 0.072 1.6E-06 38.7 7.0 85 12-96 234-331 (348)
137 TIGR00748 HMG_CoA_syn_Arc hydr 95.3 0.077 1.7E-06 38.5 6.2 83 10-95 206-295 (345)
138 PF02801 Ketoacyl-synt_C: Beta 95.3 0.044 9.6E-07 33.6 4.3 74 12-85 25-110 (119)
139 PRK06816 3-oxoacyl-(acyl carri 94.6 0.28 6.1E-06 36.0 7.8 80 14-96 274-365 (378)
140 PRK08257 acetyl-CoA acetyltran 94.1 0.33 7.2E-06 37.1 7.4 79 13-93 293-382 (498)
141 cd00832 CLF Chain-length facto 94.0 0.25 5.3E-06 36.6 6.3 75 11-85 269-351 (399)
142 PRK09258 3-oxoacyl-(acyl carri 94.0 0.24 5.1E-06 35.5 6.1 82 12-96 239-327 (338)
143 PRK07515 3-oxoacyl-(acyl carri 93.9 0.31 6.7E-06 35.6 6.6 79 13-94 272-358 (372)
144 PRK05963 3-oxoacyl-(acyl carri 93.6 0.37 8E-06 34.4 6.5 78 13-95 228-314 (326)
145 PRK04262 hypothetical protein; 93.3 0.31 6.6E-06 35.3 5.7 80 12-94 209-295 (347)
146 cd00834 KAS_I_II Beta-ketoacyl 93.3 0.34 7.4E-06 35.4 6.0 77 12-88 275-362 (406)
147 PRK05952 3-oxoacyl-(acyl carri 93.3 0.33 7.2E-06 35.8 5.9 73 12-85 254-334 (381)
148 PRK07204 3-oxoacyl-(acyl carri 93.0 0.4 8.6E-06 34.2 5.9 42 14-57 232-273 (329)
149 CHL00203 fabH 3-oxoacyl-acyl-c 92.9 0.33 7.1E-06 34.7 5.3 76 14-94 228-312 (326)
150 PRK06025 acetyl-CoA acetyltran 92.9 0.48 1E-05 35.6 6.3 24 15-38 318-341 (417)
151 PRK06840 hypothetical protein; 92.6 0.49 1.1E-05 34.0 6.0 77 14-95 239-323 (339)
152 PRK07910 3-oxoacyl-(acyl carri 92.6 0.52 1.1E-05 35.2 6.2 73 13-85 287-367 (418)
153 TIGR03150 fabF beta-ketoacyl-a 92.6 0.49 1.1E-05 34.7 6.0 73 13-85 276-358 (407)
154 PRK06519 3-oxoacyl-(acyl carri 92.3 0.65 1.4E-05 34.5 6.3 72 13-85 281-357 (398)
155 PLN02326 3-oxoacyl-[acyl-carri 92.2 0.72 1.6E-05 33.9 6.4 76 14-94 282-366 (379)
156 cd00828 elong_cond_enzymes "el 92.1 0.57 1.2E-05 34.4 5.9 74 12-85 274-357 (407)
157 PRK09185 3-oxoacyl-(acyl carri 92.0 0.57 1.2E-05 34.5 5.8 74 14-88 262-344 (392)
158 PLN02787 3-oxoacyl-[acyl-carri 91.9 0.56 1.2E-05 36.3 5.8 72 14-85 407-487 (540)
159 PRK07314 3-oxoacyl-(acyl carri 91.9 0.46 1E-05 35.0 5.2 72 14-85 278-359 (411)
160 PRK08722 3-oxoacyl-(acyl carri 91.8 0.77 1.7E-05 34.2 6.3 73 13-85 279-362 (414)
161 PRK12879 3-oxoacyl-(acyl carri 91.5 0.76 1.6E-05 32.6 5.8 77 14-95 227-312 (325)
162 COG0304 FabB 3-oxoacyl-(acyl-c 91.4 0.9 1.9E-05 34.1 6.3 73 13-85 277-359 (412)
163 TIGR00747 fabH 3-oxoacyl-(acyl 91.2 1.1 2.4E-05 31.7 6.5 78 14-94 221-305 (318)
164 cd00830 KAS_III Ketoacyl-acyl 91.1 0.75 1.6E-05 32.5 5.5 43 13-57 224-266 (320)
165 PRK05790 putative acyltransfer 91.1 1.3 2.7E-05 32.7 6.7 76 14-93 293-378 (393)
166 PTZ00050 3-oxoacyl-acyl carrie 90.9 1 2.2E-05 33.6 6.2 74 12-85 283-368 (421)
167 PRK09050 beta-ketoadipyl CoA t 90.9 1.6 3.4E-05 32.5 7.1 74 14-91 299-384 (401)
168 TIGR01930 AcCoA-C-Actrans acet 90.9 1.1 2.4E-05 33.0 6.3 75 14-92 288-372 (386)
169 COG1214 Inactive homolog of me 90.8 0.79 1.7E-05 31.3 5.2 57 8-65 35-96 (220)
170 PRK07103 polyketide beta-ketoa 90.6 1.3 2.9E-05 32.8 6.6 71 14-85 283-361 (410)
171 PLN02287 3-ketoacyl-CoA thiola 90.6 1.6 3.5E-05 33.0 7.1 74 14-91 333-418 (452)
172 PRK09051 beta-ketothiolase; Pr 90.5 2.3 4.9E-05 31.6 7.6 74 14-91 294-377 (394)
173 PRK09052 acetyl-CoA acetyltran 90.4 2 4.3E-05 32.0 7.3 25 13-37 298-322 (399)
174 PRK14691 3-oxoacyl-(acyl carri 90.4 0.95 2.1E-05 33.0 5.5 75 11-85 205-288 (342)
175 TIGR01796 CM_mono_aroH monofun 90.3 1.6 3.5E-05 27.0 5.7 45 18-63 26-73 (117)
176 PRK13359 beta-ketoadipyl CoA t 90.2 1.9 4.2E-05 32.1 7.1 74 14-91 298-383 (400)
177 PF02803 Thiolase_C: Thiolase, 90.1 2.2 4.7E-05 26.6 6.3 74 14-91 24-107 (123)
178 PRK06690 acetyl-CoA acetyltran 90.1 1.9 4.1E-05 31.7 6.9 26 13-38 259-284 (361)
179 PLN02836 3-oxoacyl-[acyl-carri 89.9 1.6 3.6E-05 32.7 6.6 74 12-85 299-384 (437)
180 PRK07937 lipid-transfer protei 89.8 3.5 7.5E-05 30.2 8.0 74 17-94 251-335 (352)
181 PRK06333 3-oxoacyl-(acyl carri 89.6 1.2 2.7E-05 33.0 5.7 74 12-85 288-370 (424)
182 TIGR03285 methan_mark_14 putat 89.4 0.48 1E-05 35.0 3.3 35 6-40 61-95 (445)
183 PF07736 CM_1: Chorismate muta 89.4 2.5 5.4E-05 26.2 6.0 48 16-64 24-74 (118)
184 TIGR02430 pcaF beta-ketoadipyl 89.3 1.8 4E-05 32.2 6.4 74 14-91 298-383 (400)
185 PRK09116 3-oxoacyl-(acyl carri 89.2 1.7 3.8E-05 32.3 6.2 73 12-85 275-355 (405)
186 PRK06501 3-oxoacyl-(acyl carri 89.1 1.2 2.6E-05 33.3 5.3 76 13-88 290-376 (425)
187 cd00833 PKS polyketide synthas 88.9 1.7 3.8E-05 31.9 6.0 79 11-89 278-370 (421)
188 PRK09352 3-oxoacyl-(acyl carri 88.9 1.6 3.4E-05 30.9 5.7 77 14-95 221-306 (319)
189 cd00825 decarbox_cond_enzymes 88.7 3.6 7.8E-05 29.1 7.4 75 11-85 204-286 (332)
190 smart00825 PKS_KS Beta-ketoacy 88.7 1.5 3.2E-05 32.4 5.5 79 11-89 278-370 (424)
191 cd00751 thiolase Thiolase are 87.8 2.6 5.7E-05 31.0 6.3 75 14-92 287-371 (386)
192 COG0332 FabH 3-oxoacyl-[acyl-c 87.6 0.9 2E-05 33.0 3.7 45 11-57 222-266 (323)
193 PF00814 Peptidase_M22: Glycop 87.4 1.4 3.1E-05 30.9 4.6 55 11-66 30-89 (268)
194 PRK06205 acetyl-CoA acetyltran 87.3 4 8.6E-05 30.4 7.0 74 14-92 300-387 (404)
195 PRK07661 acetyl-CoA acetyltran 87.2 4.1 8.8E-05 30.2 7.1 74 13-90 290-373 (391)
196 PRK05656 acetyl-CoA acetyltran 87.2 6.6 0.00014 29.1 8.1 75 14-92 293-377 (393)
197 cd00327 cond_enzymes Condensin 87.0 7.3 0.00016 26.3 8.6 82 11-94 144-243 (254)
198 TIGR03725 bact_YeaZ universal 87.0 1.4 3.1E-05 29.5 4.3 34 8-41 31-64 (202)
199 PRK08242 acetyl-CoA acetyltran 86.8 4.1 8.9E-05 30.4 6.9 39 15-57 303-343 (402)
200 KOG1394|consensus 86.7 0.62 1.4E-05 34.4 2.5 25 13-37 302-326 (440)
201 PRK07850 acetyl-CoA acetyltran 86.6 5.1 0.00011 29.7 7.3 75 13-91 286-370 (387)
202 PRK06445 acetyl-CoA acetyltran 86.2 5.5 0.00012 29.5 7.3 75 14-92 294-378 (394)
203 PRK06366 acetyl-CoA acetyltran 85.9 5.6 0.00012 29.4 7.2 25 14-38 287-311 (388)
204 PRK06954 acetyl-CoA acetyltran 85.7 4.8 0.0001 29.9 6.8 25 13-37 296-320 (397)
205 PRK12880 3-oxoacyl-(acyl carri 85.3 5.8 0.00013 28.9 7.0 76 15-92 245-324 (353)
206 cd02185 AroH Chorismate mutase 85.3 5.8 0.00013 24.6 5.9 45 18-63 26-73 (117)
207 PRK08235 acetyl-CoA acetyltran 85.2 4.7 0.0001 29.9 6.5 75 13-91 292-376 (393)
208 PRK07851 acetyl-CoA acetyltran 84.7 5.3 0.00011 29.8 6.6 23 14-36 305-327 (406)
209 PF09887 DUF2114: Uncharacteri 84.4 1.5 3.3E-05 32.5 3.5 35 6-40 63-98 (448)
210 PRK07801 acetyl-CoA acetyltran 84.2 8 0.00017 28.5 7.4 74 15-92 283-366 (382)
211 PRK06158 thiolase; Provisional 83.3 4.4 9.6E-05 29.9 5.7 26 13-38 255-280 (384)
212 PF14574 DUF4445: Domain of un 83.3 5.5 0.00012 30.0 6.2 65 8-73 300-372 (412)
213 PLN02644 acetyl-CoA C-acetyltr 82.9 6.6 0.00014 29.1 6.5 73 15-91 294-376 (394)
214 PRK09604 UGMP family protein; 82.4 8.4 0.00018 27.9 6.7 30 11-40 52-81 (332)
215 TIGR00329 gcp_kae1 metallohydr 82.3 2.2 4.9E-05 30.5 3.7 30 11-40 49-78 (305)
216 PRK06504 acetyl-CoA acetyltran 82.0 8.1 0.00018 28.7 6.6 43 12-58 288-332 (390)
217 PRK06633 acetyl-CoA acetyltran 81.5 7.1 0.00015 29.1 6.2 25 13-37 291-315 (392)
218 PRK08256 lipid-transfer protei 81.3 7.7 0.00017 28.6 6.3 26 13-38 265-290 (391)
219 cd00831 CHS_like Chalcone and 81.2 5.7 0.00012 28.8 5.6 80 13-94 260-350 (361)
220 PRK08304 stage V sporulation p 80.6 17 0.00038 26.6 7.7 88 14-104 210-320 (337)
221 COG3425 PksG 3-hydroxy-3-methy 80.5 10 0.00022 28.2 6.6 83 9-94 206-297 (377)
222 TIGR02845 spore_V_AD stage V s 80.4 20 0.00043 26.3 7.9 88 14-104 204-313 (327)
223 PRK08963 fadI 3-ketoacyl-CoA t 78.7 7.6 0.00017 29.1 5.7 27 13-39 310-336 (428)
224 cd00829 SCP-x_thiolase Thiolas 76.7 2.4 5.2E-05 30.8 2.5 28 12-39 251-278 (375)
225 PRK12578 acetyl-CoA acetyltran 76.7 2.5 5.4E-05 31.1 2.5 26 13-38 258-283 (385)
226 PTZ00455 3-ketoacyl-CoA thiola 76.2 2.5 5.4E-05 31.9 2.5 27 12-38 309-335 (438)
227 TIGR03723 bact_gcp putative gl 75.8 6 0.00013 28.5 4.3 31 10-40 49-79 (314)
228 PRK07516 acetyl-CoA acetyltran 75.7 2.5 5.4E-05 31.2 2.4 27 12-38 260-286 (389)
229 PRK06064 acetyl-CoA acetyltran 75.7 2.7 5.9E-05 30.9 2.5 26 13-38 259-284 (389)
230 PLN03169 chalcone synthase fam 75.2 14 0.0003 27.4 6.1 43 15-57 284-326 (391)
231 PRK07855 lipid-transfer protei 75.2 2.7 5.9E-05 31.1 2.5 26 13-38 267-292 (386)
232 PRK07108 acetyl-CoA acetyltran 75.0 1.9 4.2E-05 31.9 1.6 24 13-36 291-314 (392)
233 KOG1406|consensus 75.0 3.9 8.5E-05 29.3 3.0 30 11-40 271-300 (408)
234 PRK14878 UGMP family protein; 74.8 4.7 0.0001 29.1 3.5 28 13-40 47-74 (323)
235 PRK12404 stage V sporulation p 74.8 21 0.00044 26.2 6.7 88 14-104 208-318 (334)
236 cd00827 init_cond_enzymes "ini 74.7 16 0.00034 25.8 6.2 83 12-96 223-315 (324)
237 PRK06289 acetyl-CoA acetyltran 74.6 2.9 6.2E-05 31.0 2.5 25 14-38 278-302 (403)
238 cd00826 nondecarbox_cond_enzym 74.2 2.6 5.6E-05 31.3 2.1 25 14-38 271-295 (393)
239 PRK08170 acetyl-CoA acetyltran 73.4 3.2 6.9E-05 31.1 2.4 25 14-38 309-333 (426)
240 TIGR03722 arch_KAE1 universal 73.2 5.4 0.00012 28.7 3.5 28 13-40 48-75 (322)
241 PRK08313 acetyl-CoA acetyltran 73.2 35 0.00076 25.2 8.0 27 12-38 255-283 (386)
242 PRK06059 lipid-transfer protei 72.7 3.8 8.2E-05 30.3 2.7 25 14-38 275-299 (399)
243 PRK08131 acetyl-CoA acetyltran 71.5 3.2 6.9E-05 30.9 2.1 25 13-37 297-321 (401)
244 TIGR02445 fadA fatty oxidation 70.5 3.8 8.3E-05 30.3 2.3 74 14-91 282-368 (385)
245 PTZ00340 O-sialoglycoprotein e 70.4 9.2 0.0002 28.1 4.2 29 12-40 51-79 (345)
246 PF07451 SpoVAD: Stage V sporu 70.0 22 0.00048 25.9 5.9 86 14-102 205-313 (329)
247 TIGR02813 omega_3_PfaA polyket 69.3 14 0.00031 34.1 5.7 71 15-85 318-401 (2582)
248 PRK08142 acetyl-CoA acetyltran 68.2 5.4 0.00012 29.6 2.7 27 12-38 255-281 (388)
249 PF01890 CbiG_C: Cobalamin syn 68.1 14 0.00031 22.7 4.2 31 9-39 12-42 (121)
250 PRK07027 cobalamin biosynthesi 67.7 16 0.00035 22.7 4.4 29 10-38 15-43 (126)
251 PRK08947 fadA 3-ketoacyl-CoA t 67.6 4.6 0.0001 29.9 2.2 75 14-92 284-371 (387)
252 COG0533 QRI7 Metal-dependent p 66.2 12 0.00027 27.5 4.1 28 12-39 52-79 (342)
253 COG4065 Uncharacterized protei 64.7 8.8 0.00019 28.2 3.1 35 6-40 93-128 (480)
254 TIGR02446 FadI fatty oxidation 64.0 6.1 0.00013 29.8 2.3 24 15-38 314-337 (430)
255 PRK09268 acetyl-CoA acetyltran 63.9 6.6 0.00014 29.5 2.5 27 13-39 310-336 (427)
256 PF04422 FrhB_FdhB_N: Coenzyme 62.6 15 0.00033 21.0 3.3 29 66-94 15-44 (82)
257 PRK06365 acetyl-CoA acetyltran 62.4 8 0.00017 29.1 2.7 27 13-39 294-322 (430)
258 KOG2707|consensus 61.3 10 0.00022 28.2 2.9 26 13-38 85-110 (405)
259 PTZ00186 heat shock 70 kDa pre 60.3 44 0.00095 26.8 6.4 44 14-57 336-380 (657)
260 PRK06157 acetyl-CoA acetyltran 60.0 9.8 0.00021 28.2 2.7 25 14-38 268-294 (398)
261 PRK08439 3-oxoacyl-(acyl carri 59.8 40 0.00086 25.0 5.9 72 12-85 274-355 (406)
262 PRK13410 molecular chaperone D 59.7 37 0.00079 27.2 6.0 45 13-57 310-355 (668)
263 PLN03184 chloroplast Hsp70; Pr 57.6 43 0.00093 26.9 6.0 44 14-57 348-392 (673)
264 PRK09585 anmK anhydro-N-acetyl 57.5 14 0.00031 27.4 3.2 27 11-37 70-96 (365)
265 PRK05183 hscA chaperone protei 56.9 61 0.0013 25.7 6.7 44 14-57 311-355 (616)
266 PF05378 Hydant_A_N: Hydantoin 56.1 16 0.00035 24.0 3.0 34 8-41 33-66 (176)
267 PRK06066 acetyl-CoA acetyltran 56.1 12 0.00025 27.9 2.6 24 15-38 259-284 (385)
268 PLN03170 chalcone synthase; Pr 55.1 75 0.0016 23.7 6.7 43 13-57 282-324 (401)
269 TIGR01991 HscA Fe-S protein as 54.3 85 0.0018 24.8 7.1 44 14-57 295-339 (599)
270 PF09663 Amido_AtzD_TrzD: Amid 53.4 19 0.00041 26.6 3.1 27 11-37 131-158 (365)
271 TIGR02714 amido_AtzD_TrzD ring 53.2 18 0.00039 26.6 3.0 27 11-37 132-159 (366)
272 PRK09605 bifunctional UGMP fam 52.7 20 0.00043 27.6 3.4 28 13-40 51-78 (535)
273 COG3894 Uncharacterized metal- 52.6 15 0.00032 28.7 2.6 35 21-56 483-517 (614)
274 PRK05788 cobalamin biosynthesi 51.6 47 0.001 24.1 5.0 30 10-39 206-235 (315)
275 KOG2708|consensus 50.7 27 0.00058 24.7 3.5 27 13-39 52-78 (336)
276 COG2971 Predicted N-acetylgluc 48.2 22 0.00048 25.7 2.9 33 8-40 45-77 (301)
277 PRK13411 molecular chaperone D 47.9 69 0.0015 25.6 5.8 43 14-56 310-353 (653)
278 cd03022 DsbA_HCCA_Iso DsbA fam 47.7 7 0.00015 25.3 0.3 30 50-79 159-188 (192)
279 KOG1391|consensus 45.5 40 0.00087 24.3 3.7 25 15-39 296-320 (396)
280 CHL00094 dnaK heat shock prote 44.9 99 0.0021 24.5 6.2 44 14-57 311-355 (621)
281 PF01323 DSBA: DSBA-like thior 44.5 1.4 3E-05 28.6 -3.5 59 18-76 126-186 (193)
282 PTZ00009 heat shock 70 kDa pro 44.3 83 0.0018 25.1 5.8 42 15-56 316-358 (653)
283 PRK07967 3-oxoacyl-(acyl carri 43.9 84 0.0018 23.5 5.5 71 12-85 274-352 (406)
284 COG0443 DnaK Molecular chapero 43.6 89 0.0019 24.7 5.7 61 14-76 292-353 (579)
285 PF14804 Jag_N: Jag N-terminus 42.9 39 0.00085 17.6 2.7 25 15-39 8-32 (52)
286 PLN03173 chalcone synthase; Pr 42.8 1.4E+02 0.003 22.3 6.6 43 13-57 278-320 (391)
287 PRK06065 acetyl-CoA acetyltran 40.8 32 0.00068 25.6 2.8 26 14-39 264-291 (392)
288 TIGR01835 HMG-CoA-S_prok 3-hyd 40.5 42 0.00091 24.7 3.4 27 13-39 206-232 (379)
289 PF02817 E3_binding: e3 bindin 40.1 31 0.00066 16.9 1.9 17 17-33 8-24 (39)
290 PF03702 UPF0075: Uncharacteri 39.7 35 0.00076 25.3 2.9 26 12-37 68-93 (364)
291 cd01781 AF6_RA_repeat2 Ubiquit 39.5 44 0.00095 20.1 2.8 30 9-38 23-52 (100)
292 KOG0103|consensus 38.5 78 0.0017 25.8 4.7 60 18-79 320-381 (727)
293 PRK00290 dnaK molecular chaper 38.4 1.3E+02 0.0029 23.8 6.0 43 14-56 309-352 (627)
294 TIGR02350 prok_dnaK chaperone 36.6 1.3E+02 0.0029 23.5 5.8 43 14-56 307-350 (595)
295 PF00975 Thioesterase: Thioest 36.2 93 0.002 20.4 4.4 33 61-93 67-101 (229)
296 PF06089 Asparaginase_II: L-as 35.2 1.6E+02 0.0034 21.7 5.5 64 13-82 80-143 (324)
297 COG4401 AroH Chorismate mutase 34.3 1.2E+02 0.0025 18.8 4.5 58 11-69 17-81 (125)
298 PF06406 StbA: StbA protein; 33.3 47 0.001 23.9 2.7 27 11-37 75-101 (318)
299 COG2073 CbiG Cobalamin biosynt 33.0 1.3E+02 0.0028 21.6 4.8 48 9-56 206-253 (298)
300 PTZ00400 DnaK-type molecular c 32.9 69 0.0015 25.6 3.7 42 15-56 351-393 (663)
301 COG0399 WecE Predicted pyridox 30.1 48 0.001 24.7 2.3 40 48-93 41-81 (374)
302 PF14552 Tautomerase_2: Tautom 30.1 43 0.00094 19.2 1.7 29 12-40 47-75 (82)
303 PRK03011 butyrate kinase; Prov 29.4 97 0.0021 22.9 3.8 30 8-37 44-73 (358)
304 PLN02854 3-ketoacyl-CoA syntha 29.3 2.8E+02 0.0062 21.8 7.5 42 14-57 387-434 (521)
305 COG3321 Polyketide synthase mo 29.2 53 0.0012 27.9 2.6 74 12-85 283-368 (1061)
306 PF05589 DUF768: Protein of un 28.9 49 0.0011 18.2 1.7 25 9-34 27-51 (64)
307 PF01869 BcrAD_BadFG: BadF/Bad 28.7 1.5E+02 0.0033 20.4 4.6 27 13-39 43-69 (271)
308 PF00012 HSP70: Hsp70 protein; 27.7 1.4E+02 0.003 23.2 4.5 42 14-55 311-353 (602)
309 COG1908 FrhD Coenzyme F420-red 27.6 95 0.0021 19.5 2.9 28 15-42 80-107 (132)
310 PF01041 DegT_DnrJ_EryC1: DegT 27.6 55 0.0012 23.7 2.2 40 48-93 32-72 (363)
311 PF00370 FGGY_N: FGGY family o 26.9 1.5E+02 0.0032 20.0 4.2 30 12-41 50-79 (245)
312 cd00248 Mth938-like Mth938-lik 26.8 65 0.0014 19.4 2.2 60 10-75 36-98 (109)
313 PLN02160 thiosulfate sulfurtra 26.6 62 0.0014 20.1 2.1 30 64-93 84-114 (136)
314 PF04430 DUF498: Protein of un 26.6 78 0.0017 18.9 2.5 45 30-75 52-99 (110)
315 COG2264 PrmA Ribosomal protein 26.5 90 0.002 22.6 3.1 27 62-92 165-191 (300)
316 KOG1205|consensus 26.5 1.2E+02 0.0026 21.8 3.7 29 64-93 16-44 (282)
317 PRK09425 prpD 2-methylcitrate 26.2 93 0.002 23.9 3.3 34 6-39 288-321 (480)
318 cd01817 RGS12_RBD Ubiquitin do 25.2 1E+02 0.0022 17.5 2.5 30 6-39 18-47 (73)
319 cd03024 DsbA_FrnE DsbA family, 25.1 64 0.0014 20.9 2.1 16 50-65 167-182 (201)
320 PRK10954 periplasmic protein d 25.0 24 0.00051 23.6 -0.0 16 50-65 159-174 (207)
321 PF03990 DUF348: Domain of unk 24.5 1E+02 0.0022 15.1 2.3 20 17-36 19-38 (43)
322 cd03021 DsbA_GSTK DsbA family, 24.1 30 0.00065 23.0 0.3 16 51-66 172-187 (209)
323 TIGR03192 benz_CoA_bzdQ benzoy 24.0 1.3E+02 0.0029 21.7 3.6 32 6-37 62-93 (293)
324 PF04127 DFP: DNA / pantothena 23.6 93 0.002 20.7 2.6 27 69-95 27-53 (185)
325 PF11248 DUF3046: Protein of u 23.5 18 0.0004 19.9 -0.6 19 13-32 31-49 (63)
326 PF14451 Ub-Mut7C: Mut7-C ubiq 23.4 72 0.0016 18.3 1.8 24 17-40 34-57 (81)
327 PLN02404 6,7-dimethyl-8-ribity 23.0 1.6E+02 0.0034 18.8 3.5 30 8-37 19-48 (141)
328 PRK15173 peptidase; Provisiona 22.8 1.2E+02 0.0026 21.9 3.2 30 3-32 29-58 (323)
329 KOG0100|consensus 22.8 82 0.0018 24.3 2.4 22 16-37 347-368 (663)
330 PF03972 MmgE_PrpD: MmgE/PrpD 22.6 85 0.0019 23.7 2.5 34 6-39 265-298 (445)
331 PF06568 DUF1127: Domain of un 22.4 57 0.0012 15.8 1.1 15 19-33 25-39 (40)
332 cd05560 Xcc1710_like Xcc1710_l 22.3 88 0.0019 18.8 2.1 43 32-75 53-98 (109)
333 TIGR02261 benz_CoA_red_D benzo 21.9 2E+02 0.0044 20.4 4.1 31 7-37 37-67 (262)
334 PF03975 CheD: CheD chemotacti 21.7 1.8E+02 0.004 17.5 3.5 34 7-40 15-48 (114)
335 PF09837 DUF2064: Uncharacteri 21.7 1.4E+02 0.003 18.3 3.0 33 65-97 39-71 (122)
336 cd03025 DsbA_FrnE_like DsbA fa 21.7 35 0.00075 22.0 0.3 19 50-68 161-179 (193)
337 KOG0102|consensus 21.3 69 0.0015 25.4 1.8 74 15-93 337-413 (640)
338 COG1665 Predicted nucleotidylt 21.1 1.6E+02 0.0035 21.3 3.4 27 12-38 104-147 (315)
339 PF09861 DUF2088: Domain of un 21.1 1.3E+02 0.0028 20.4 2.9 29 9-37 68-96 (204)
340 TIGR00114 lumazine-synth 6,7-d 20.8 1.8E+02 0.0039 18.5 3.4 30 8-37 12-41 (138)
341 TIGR02981 phageshock_pspE phag 20.6 64 0.0014 19.0 1.2 29 67-95 64-93 (101)
342 KOG2839|consensus 20.3 1.7E+02 0.0037 18.9 3.2 22 6-30 47-68 (145)
No 1
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=99.84 E-value=2.5e-20 Score=132.27 Aligned_cols=99 Identities=29% Similarity=0.355 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchh---HHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQ---RALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~---~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i 82 (110)
+++...+|+.+|+++||+++|++|+|||.||++++++++..|. .++..||++++++|+++.+|++++.||..|..+|
T Consensus 48 ~~e~~s~la~~Aa~~AL~~Agi~~~dIDlII~aT~tpd~~~Ps~A~~vq~~LG~~~~~afDl~aaCsgf~yaL~~A~~~i 127 (323)
T COG0332 48 DDETTSDLAVEAARKALEDAGISPDDIDLIIVATSTPDHLFPSTACLVQARLGLGGAPAFDLQAACSGFLYALSVADGLI 127 (323)
T ss_pred CCccHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCcccCCChHHHHHHHHhCCCCcceeechhhhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999987664 4678899988999999999999999999999999
Q ss_pred HcC-CCeEEEEeeccCCCCCCCC
Q psy13271 83 ESG-SDCTLALGFEKMEKGSLGA 104 (110)
Q Consensus 83 ~sG-~~~vlv~g~e~~s~~~~~~ 104 (110)
++| ++++||+++|.+|+..-+.
T Consensus 128 ~sG~~k~vLVVg~e~~S~~ld~~ 150 (323)
T COG0332 128 RSGGYKNVLVVGAETLSRILDWT 150 (323)
T ss_pred HcCCCCEEEEEehhHhhccCCHh
Confidence 999 9999999999998775443
No 2
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=99.81 E-value=3.5e-19 Score=129.91 Aligned_cols=102 Identities=28% Similarity=0.408 Sum_probs=88.7
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecC--CCcch-hHHHHHcCCC-CCCeeeEeccchHHHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYG--DSTCG-QRALYQIGMT-GIPVFNVNNNCSTGSS 73 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~--~~~~~-~~~a~~lg~~-~~~~~~i~~~C~sg~~ 73 (110)
|+|++ ++.++.+|+.+|++++|+++|++++|||.+|+++..+ +...+ ..++..+|++ ++|+++++++|+||..
T Consensus 14 fg~~~g~~~~~~~~eLa~~A~~~aL~~agl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~Gl~~~~p~~~V~~~CaSg~~ 93 (393)
T PRK08235 14 FGKFGGSLKDVKATELGGIAIKEALERANVSAEDVEEVIMGTVLQGGQGQIPSRQAARAAGIPWEVQTETVNKVCASGLR 93 (393)
T ss_pred ccCCCCcCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccCCCCCCHHHHHHHHcCCCCCcceeehhhhhhHHHH
Confidence 56643 5789999999999999999999999999999998765 32222 3466789995 6899999999999999
Q ss_pred HHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 74 ALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 74 al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
++..|+++|++| +|++|++|+|++|+.|+
T Consensus 94 Al~~A~~~I~sG~~d~vLvvG~E~ms~~p~ 123 (393)
T PRK08235 94 AVTLADQIIRAGDASVIVAGGMESMSNAPY 123 (393)
T ss_pred HHHHHHHHHHCCCCCEEEEEeeeccccCcc
Confidence 999999999999 99999999999998875
No 3
>PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B ....
Probab=99.81 E-value=2.6e-19 Score=124.56 Aligned_cols=98 Identities=35% Similarity=0.526 Sum_probs=83.1
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhH----HHHHcCCC-CCCeeeEeccchHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQR----ALYQIGMT-GIPVFNVNNNCSTGSSALMLAKQ 80 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~----~a~~lg~~-~~~~~~i~~~C~sg~~al~~A~~ 80 (110)
++.++.+|+.++++++|+++++++++||.+++|+..+... +.. ++-..|+. .+|+++|+++|+||+.|+.+|+.
T Consensus 22 ~~~~~~~L~~~a~~~al~~~~i~~~~Id~v~~G~~~~~~~-g~~~ar~~~l~aGl~~~vp~~~V~~~CaSG~~Av~~a~~ 100 (264)
T PF00108_consen 22 ADVSPEDLAAEAVKAALERAGIDPEDIDAVIVGNVLQEGE-GQNIARQAALAAGLPESVPATTVNRACASGLQAVHLAAM 100 (264)
T ss_dssp TTS-HHHHHHHHHHHHHHHHTSHGGGEEEEEEE-SSSCTT-TCHHHHHHHHHTTS-TTSEEEEEE-GGGHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcccchhhhhhcCccccccccc-chhhhhhhhhhcccccccceeeehhhhhHHHHHHHHhhh
Confidence 7899999999999999999999999999999999876544 333 33457884 57999999999999999999999
Q ss_pred HHHcC-CCeEEEEeeccCCCCCCCC
Q psy13271 81 FIESG-SDCTLALGFEKMEKGSLGA 104 (110)
Q Consensus 81 ~i~sG-~~~vlv~g~e~~s~~~~~~ 104 (110)
.|++| +|++|++|+|+||+.|+..
T Consensus 101 ~I~sG~~dvvlagGvE~mS~~p~~~ 125 (264)
T PF00108_consen 101 AIASGEADVVLAGGVESMSRVPMGL 125 (264)
T ss_dssp HHHTTS-SEEEEEEEEETTTSCEEE
T ss_pred hhcCCCccEEEEecccccccccccc
Confidence 99999 9999999999999998766
No 4
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=99.80 E-value=9e-19 Score=127.73 Aligned_cols=102 Identities=25% Similarity=0.383 Sum_probs=88.6
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCC---cchhHHHHHcCCCC-CCeeeEeccchHHHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDS---TCGQRALYQIGMTG-IPVFNVNNNCSTGSS 73 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~---~~~~~~a~~lg~~~-~~~~~i~~~C~sg~~ 73 (110)
|||++ +++++.+|+.+|++++|+++|+++++||.+++++..+.. ..+..++..+|+.. +|+++++++|+||..
T Consensus 14 fgk~~g~~~~~~~~~La~~A~~~AL~~agl~~~dID~vi~g~~~~~~~~~~~a~~va~~lGl~~~~p~~~V~~~Casg~~ 93 (393)
T PRK05656 14 IGSFQGSLANIPAVELGAAVIRRLLEQTGLDPAQVDEVILGQVLTAGAGQNPARQAAIKAGLPHSVPAMTLNKVCGSGLK 93 (393)
T ss_pred ccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEecCCCCCCcHHHHHHHHcCCCCCcceEEecccchhHHH
Confidence 56643 568899999999999999999999999999999876432 22334778899975 899999999999999
Q ss_pred HHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 74 ALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 74 al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
++.+|+++|++| +|++|++|+|++|+.|+
T Consensus 94 ai~~A~~~I~sG~~d~vLv~G~E~ms~~p~ 123 (393)
T PRK05656 94 ALHLAAQAIRCGDAEVIIAGGQENMSLAPY 123 (393)
T ss_pred HHHHHHHHHHcCCCCEEEEEEEhhhccCcc
Confidence 999999999999 99999999999998775
No 5
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=99.80 E-value=9.6e-19 Score=127.54 Aligned_cols=97 Identities=23% Similarity=0.324 Sum_probs=85.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchh----HHHHHcCCC-CCCeeeEeccchHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQ----RALYQIGMT-GIPVFNVNNNCSTGSSALMLAKQ 80 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~----~~a~~lg~~-~~~~~~i~~~C~sg~~al~~A~~ 80 (110)
+++++.+|+.+|++++|+++|+++++||.+++|+..++...++ .++..+|++ .+|+++++++|+||..|++.|++
T Consensus 23 ~~~~~~dL~~~A~~~aL~~agi~~~~ID~vi~G~~~~~~~~~~~~a~~i~~~lGl~~~~p~~~V~~aCaSg~~Al~~A~~ 102 (392)
T PRK07108 23 NMTHGATLGGHVVQHAVERAKLDPAEVEDVIMGCANPEGATGANIARQIALRAGLPVTVPGMTVNRFCSSGLQTIALAAQ 102 (392)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCcEEEEEeecccccccHHHHHHHHHcCCCCCCceeeecchhhHHHHHHHHHHH
Confidence 4567899999999999999999999999999999876654332 345567886 48999999999999999999999
Q ss_pred HHHcC-CCeEEEEeeccCCCCCC
Q psy13271 81 FIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 81 ~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
+|++| +|++|++|+|+||+.|+
T Consensus 103 ~I~sG~~d~vlagGvE~ms~~p~ 125 (392)
T PRK07108 103 RVIAGEGDVFVAGGVESISCVQN 125 (392)
T ss_pred HHHCCCCCEEEEEEEeccCCCCC
Confidence 99999 99999999999998775
No 6
>PRK09051 beta-ketothiolase; Provisional
Probab=99.79 E-value=1.6e-18 Score=126.54 Aligned_cols=97 Identities=29% Similarity=0.415 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCc----chhHHHHHcCCC-CCCeeeEeccchHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDST----CGQRALYQIGMT-GIPVFNVNNNCSTGSSALMLAKQ 80 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~----~~~~~a~~lg~~-~~~~~~i~~~C~sg~~al~~A~~ 80 (110)
+++++.+|+.+|++++|+++|++++|||.+++++..++.. .+..++..+|+. ++|+++++++|+||+.++..|++
T Consensus 23 ~~~~~~eL~~~A~~~AL~~agi~~~dID~vi~g~~~~~~~~~~~~a~~~~~~~Gl~~~~p~~~V~~aCaSg~~Al~~A~~ 102 (394)
T PRK09051 23 KDVAPTDLGATVVREALARAGVDPDQVGHVVFGHVIPTEPRDMYLSRVAAINAGVPQETPAFNVNRLCGSGLQAIVSAAQ 102 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEeeeccccCCCccHHHHHHHHcCCCCCCceEEecccchHHHHHHHHHHH
Confidence 5779999999999999999999999999999998775432 222345667986 58999999999999999999999
Q ss_pred HHHcC-CCeEEEEeeccCCCCCC
Q psy13271 81 FIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 81 ~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
+|++| +|++|++|+|++|+.|+
T Consensus 103 ~I~sG~~d~vLvvG~E~mS~~p~ 125 (394)
T PRK09051 103 AILLGDADVAIGGGAESMSRAPY 125 (394)
T ss_pred HHHcCCCCEEEEEeehhcccCcc
Confidence 99999 99999999999998765
No 7
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=99.79 E-value=1.7e-18 Score=126.04 Aligned_cols=102 Identities=25% Similarity=0.325 Sum_probs=86.4
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchh----HHHHHcCCC-CCCeeeEeccchHHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQ----RALYQIGMT-GIPVFNVNNNCSTGS 72 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~----~~a~~lg~~-~~~~~~i~~~C~sg~ 72 (110)
|||+. ++.++.+|+.++++++|+++|+++++||.+++|+..+....+. .++..+|+. ++|+++|+++|+||+
T Consensus 14 fgk~~g~~~~~~~~eL~~~a~~~aL~~agi~~~~Id~v~~G~~~~~~~q~~~~ar~~~l~~Gl~~~~p~~tV~~~CaSG~ 93 (387)
T PRK07850 14 IGKRNGWLSGLHAAELLGAVQRAVLDRAGIDPGDVEQVIGGCVTQAGEQSNNITRTAWLHAGLPYHVGATTIDCQCGSAQ 93 (387)
T ss_pred ccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccchHHHHHHHhCCCCCCCceEEEecccccHH
Confidence 66643 3678999999999999999999999999999998653222112 233448997 589999999999999
Q ss_pred HHHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 73 SALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 73 ~al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
.|+..|++.|++| +|.+|++|+|+||+.|+
T Consensus 94 ~A~~~A~~~I~sG~~dvvla~G~E~mS~~p~ 124 (387)
T PRK07850 94 QANHLVAGLIAAGAIDVGIACGVEAMSRVPL 124 (387)
T ss_pred HHHHHHHHHHHCCCCCEEEEEeEecCCCCcc
Confidence 9999999999999 99999999999999885
No 8
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=99.79 E-value=1.7e-18 Score=126.67 Aligned_cols=102 Identities=21% Similarity=0.366 Sum_probs=88.4
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch---hHHHHHcCCC-CCCeeeEeccchHHHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG---QRALYQIGMT-GIPVFNVNNNCSTGSS 73 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~---~~~a~~lg~~-~~~~~~i~~~C~sg~~ 73 (110)
|||+. +++++.+|+.+|++++|++++++++|||.+++++..++...+ ..++..+|+. ++|+++++++|+||+.
T Consensus 14 fgk~~g~~~~~~~~eLa~~A~~~AL~~agl~~~dID~vv~g~~~~~~~~~~~a~~va~~~Gl~~~~p~~~V~~~CaSg~~ 93 (404)
T PRK06205 14 VGRFGGAFKDVPAEELAATVIRALVERTGIDPARIDDVIFGQGYPNGEAPAIGRVAALDAGLPVTVPGMQLDRRCGSGLQ 93 (404)
T ss_pred ccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCCCCCCceeehhhhhhHHHH
Confidence 56643 478999999999999999999999999999999876654322 2366778997 5899999999999999
Q ss_pred HHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 74 ALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 74 al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
++..|+++|++| ++++|++|+|++++.++
T Consensus 94 Al~~A~~~I~sG~~d~vLv~G~E~ms~~~~ 123 (404)
T PRK06205 94 AVITAAMQVQTGAADVVIAGGAESMSNVEF 123 (404)
T ss_pred HHHHHHHHHHcCCCCEEEEeeehhhccCcc
Confidence 999999999999 99999999999997663
No 9
>PRK12578 acetyl-CoA acetyltransferase; Provisional
Probab=99.79 E-value=2.4e-18 Score=125.16 Aligned_cols=101 Identities=29% Similarity=0.383 Sum_probs=88.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCC---cchhHHHHHcCCCCCCeeeEeccchHHHHHHHH
Q psy13271 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDS---TCGQRALYQIGMTGIPVFNVNNNCSTGSSALML 77 (110)
Q Consensus 1 f~~~~~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~---~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~ 77 (110)
|+|+ +++++.+|+.+|++++|+++||+++|||.+++++..++. ..+..++..+|+++.+.++++++|+|+..+|..
T Consensus 13 ~~~~-~~~~~~eLa~~A~~~AL~dAgi~~~dID~vi~g~~~~~~~~~~~a~~v~~~lGl~~~~~~~v~~~casg~~al~~ 91 (385)
T PRK12578 13 FGRR-DDVSVQELAWESIKEALNDAGVSQTDIELVVVGSTAYRGIELYPAPIVAEYSGLTGKVPLRVEAMCATGLAASLT 91 (385)
T ss_pred eeec-CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccccccCChHHHHHHHhCCCCCCeeEEeccCHHHHHHHHH
Confidence 5665 688999999999999999999999999999998865432 233457788999877889999999999999999
Q ss_pred HHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 78 AKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 78 A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
|+.+|++| ++++||+++|.+++.++
T Consensus 92 A~~~I~sG~~~~vLvvg~e~~s~~~~ 117 (385)
T PRK12578 92 AYTAVASGLVDMAIAVGVDKMTEVDT 117 (385)
T ss_pred HHHHHHCCCCCEEEEEEEeecccCcc
Confidence 99999999 99999999999987653
No 10
>PRK08242 acetyl-CoA acetyltransferase; Validated
Probab=99.79 E-value=2.9e-18 Score=125.29 Aligned_cols=97 Identities=25% Similarity=0.355 Sum_probs=86.6
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCc----chhHHHHHcCCC-CCCeeeEeccchHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDST----CGQRALYQIGMT-GIPVFNVNNNCSTGSSALMLAKQ 80 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~----~~~~~a~~lg~~-~~~~~~i~~~C~sg~~al~~A~~ 80 (110)
++.++.+|+.+|++++|+++|+++++||.||+++..+... .+...+..+|+. .+|+++|+++|+||+.|+..|++
T Consensus 24 ~~~~~~dLa~~A~~~al~~agi~p~~ID~vi~G~~~~~~~~~~~~~r~a~~~~Gl~~~~pa~~Vn~aCaSg~~Ai~~A~~ 103 (402)
T PRK08242 24 HEVKPVRLAAGLLEALRDRNGLDTAAVDDVVLGCVTPVGDQGADIARTAVLAAGLPETVPGVQINRFCASGLEAVNLAAA 103 (402)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEecCCCccccccHHHHHHHHcCCCCCCCeEEEcchhhhHHHHHHHHHH
Confidence 7889999999999999999999999999999999876432 233455678984 48999999999999999999999
Q ss_pred HHHcC-CCeEEEEeeccCCCCCC
Q psy13271 81 FIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 81 ~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
+|++| +|++|++|+|+||+.|+
T Consensus 104 ~I~sG~~d~vLv~G~E~mS~~p~ 126 (402)
T PRK08242 104 KVRSGWDDLVIAGGVESMSRVPM 126 (402)
T ss_pred HHHcCCCCEEEEEEEEccCCCcc
Confidence 99999 99999999999999886
No 11
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=99.78 E-value=2.4e-18 Score=125.17 Aligned_cols=102 Identities=25% Similarity=0.400 Sum_probs=86.9
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch---hHHHHHcCCCC-CCeeeEeccchHHHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG---QRALYQIGMTG-IPVFNVNNNCSTGSS 73 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~---~~~a~~lg~~~-~~~~~i~~~C~sg~~ 73 (110)
|+|+. ++++..+|+.+|++++|+++|++++|||.+++++..+++..+ ..++..+|+++ +|+++++++|+|+..
T Consensus 10 f~r~~~~~~~~~~~~La~~A~~~AL~dAgl~~~dID~vi~~~~~~~~~~~~~a~~v~~~lGl~~~~~~~~v~~~c~s~~~ 89 (386)
T cd00751 10 IGRFGGALKDVSADDLGAAVIKALLERAGLDPEEVDDVIMGNVLQAGEGQNPARQAALLAGLPESVPATTVNRVCGSGLQ 89 (386)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHhcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCCCCCCchhhhccccHHHHH
Confidence 55543 258899999999999999999999999999998765544322 23667899974 799999999999999
Q ss_pred HHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 74 ALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 74 al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
+|..|+++|++| +++|||+++|.+++.++
T Consensus 90 al~~A~~~I~sG~~~~vLv~g~e~~s~~~~ 119 (386)
T cd00751 90 AVALAAQSIAAGEADVVVAGGVESMSRAPY 119 (386)
T ss_pred HHHHHHHHHHCCCCCeEEEeeeeccccCcc
Confidence 999999999999 99999999999987663
No 12
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=99.78 E-value=3e-18 Score=125.24 Aligned_cols=102 Identities=24% Similarity=0.379 Sum_probs=87.7
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchh----HHHHHcCCC-CCCeeeEeccchHHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQ----RALYQIGMT-GIPVFNVNNNCSTGS 72 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~----~~a~~lg~~-~~~~~~i~~~C~sg~ 72 (110)
|||+. ++.++.+|+.++++++|+++|+++++||.+++|+..++..... .++..+|+. .+|+++++++|+||+
T Consensus 14 fgk~~g~l~~~~~~eL~~~a~~~al~~agi~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Glp~~~p~~tV~~~CaSG~ 93 (401)
T PRK08131 14 FGRHAGALASVRPDDLAATVIRRLLEKSGFPGDDIEDVILGCTNQAGEDSRNVARNALLLAGLPVTVPGQTVNRLCASGL 93 (401)
T ss_pred ccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccHHHHHHHhcCCCCCCceeeeechhhhHH
Confidence 56643 3789999999999999999999999999999998764432222 255678886 589999999999999
Q ss_pred HHHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 73 SALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 73 ~al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
.|+..|++.|++| +|.+|++|+|+||+.++
T Consensus 94 ~Ai~~A~~~I~sG~~dvvlagG~Esms~~~~ 124 (401)
T PRK08131 94 AAVIDAARAITCGEGDLYLAGGVESMSRAPF 124 (401)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEecCCCCCcc
Confidence 9999999999999 99999999999998875
No 13
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=99.78 E-value=3.3e-18 Score=124.96 Aligned_cols=97 Identities=24% Similarity=0.385 Sum_probs=84.4
Q ss_pred CCCCHHHHHHHHHHHHHHHc-CCCccccCeEEEEeecCCCcch---hH-HHHHcCCC-CCCeeeEeccchHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDA-GISINQVQQACCGYVYGDSTCG---QR-ALYQIGMT-GIPVFNVNNNCSTGSSALMLAK 79 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~a-gl~~~~id~vi~~~~~~~~~~~---~~-~a~~lg~~-~~~~~~i~~~C~sg~~al~~A~ 79 (110)
++.+..+|+.+|++++|+++ |++++|||.+|+++..++...+ .. +...+|+. ++|+++|+++|+||..|+..|+
T Consensus 27 ~~~s~~eLa~~A~~~AL~~a~gl~~~dID~vi~g~~~~~~~~~~~~ar~~~~~~Gl~~~~p~~~V~~aCaSg~~Al~~A~ 106 (399)
T PRK09052 27 KNTRPDDLLAHVLRSAVAQVPGLDPKLIEDAIVGCAMPEAEQGLNVARIGALLAGLPNSVGGVTVNRFCASGLQAVAMAA 106 (399)
T ss_pred CCCCHHHHHHHHHHHHHHhccCcCHHHCCEEEEEecCCCCCCCchHHHHHHHHcCCCCCCceeeecchhhHHHHHHHHHH
Confidence 46899999999999999997 9999999999999877654322 23 33456897 4899999999999999999999
Q ss_pred HHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 80 QFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 80 ~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
.+|++| +|++|++|+|++|+.|+
T Consensus 107 ~~I~sG~~d~vLv~G~E~mS~~p~ 130 (399)
T PRK09052 107 DRIRVGEADVMIAAGVESMSMVPM 130 (399)
T ss_pred HHHHCCCCCEEEEEEEeccccCcc
Confidence 999999 99999999999998874
No 14
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=99.77 E-value=4.6e-18 Score=125.18 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=87.1
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCc---chhHHHHHcCCC-CCCeeeEeccchHHHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDST---CGQRALYQIGMT-GIPVFNVNNNCSTGSS 73 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~---~~~~~a~~lg~~-~~~~~~i~~~C~sg~~ 73 (110)
|+++. ++.++.+|+.++++++|+++|+++++||.+++|+..+... ....++..+|+. ++|+++++++|+||+.
T Consensus 17 fgk~~g~l~~~~~~eL~~~a~~~al~~agl~~~~ID~vi~G~~~~~~~~~~~ar~~a~~aGl~~~~P~~tV~~aCaSG~~ 96 (428)
T PRK08963 17 FAKQATAFHGIPAVDLGKMVVGELLARSEIDPELIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQ 96 (428)
T ss_pred ccCCCCCcCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCccHHHHHHHHHCCCCCCCcceeehhhhHHHHH
Confidence 55542 5789999999999999999999999999999998643221 112356678997 5899999999999999
Q ss_pred HHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 74 ALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 74 al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
|+..|+++|++| +|++|++|+|+||+.++
T Consensus 97 Ai~~Aa~~I~sG~~dvvLvgG~Esms~~~~ 126 (428)
T PRK08963 97 AVANVAESIMAGTIDIGIAGGADSSSVLPI 126 (428)
T ss_pred HHHHHHHHHHCCCCCEEEEecccccCCCcc
Confidence 999999999999 99999999999998874
No 15
>PRK06157 acetyl-CoA acetyltransferase; Validated
Probab=99.77 E-value=7.3e-18 Score=123.15 Aligned_cols=101 Identities=35% Similarity=0.486 Sum_probs=87.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCC---CcchhHHHHHcCCCCCCeeeEeccchHHHHHHHH
Q psy13271 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGD---STCGQRALYQIGMTGIPVFNVNNNCSTGSSALML 77 (110)
Q Consensus 1 f~~~~~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~---~~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~ 77 (110)
|+|+ ++.+..+|+.++++++|+++||+++|||.+++++...+ ...+..+++.+|+.+.+.++++++|+|+..++++
T Consensus 19 ~~~~-~~~~~~~L~~ea~~~AL~dagl~~~dID~v~vg~~~~~~~~~~~~~~~a~~lGl~~~~~~~v~~~c~sg~~ai~~ 97 (398)
T PRK06157 19 FGER-WDAGAEDLMVEAFLEALADAGIEPKDIDAAWFGTHYDEIGSGKSGTPLSRALRLPNIPVTRVENFCATGSEAFRG 97 (398)
T ss_pred cccc-CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccchhHHHHHHcCCCCCCEEEEecccHHHHHHHHH
Confidence 5665 57889999999999999999999999999999875432 2223567889999878999999999999999999
Q ss_pred HHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 78 AKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 78 A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
|+..|++| +|++|++++|++++.++
T Consensus 98 A~~~I~sG~~d~vlv~G~e~~s~~~~ 123 (398)
T PRK06157 98 AVYAVASGAYDIALALGVEKLKDTGY 123 (398)
T ss_pred HHHHHHCCCCCEEEEEEEeecccCcc
Confidence 99999999 99999999999987654
No 16
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=99.77 E-value=9.9e-18 Score=122.51 Aligned_cols=102 Identities=18% Similarity=0.302 Sum_probs=87.4
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHH-cCCCccccCeEEEEeecCCCc----chhHHHHHcCCCC-CCeeeEeccchHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDD-AGISINQVQQACCGYVYGDST----CGQRALYQIGMTG-IPVFNVNNNCSTG 71 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~-agl~~~~id~vi~~~~~~~~~----~~~~~a~~lg~~~-~~~~~i~~~C~sg 71 (110)
|||++ ++.++.+|+.++++++|++ +++++++||.+|+|+..+... .+..++..+|+.. +|+++|+++|+||
T Consensus 14 fgk~~g~~~~~~~~~L~~~a~~~al~r~a~i~~~~Id~vi~G~~~~~~~~g~~~ar~~~l~~Gl~~~vp~~tV~~~CaSG 93 (400)
T PRK13359 14 IGRYGGALSSVRADDLGAVPLKALVERNPDVDWAAIDDVIYGCANQAGEDNRNVARMSLLLAGLPHGVPGSTINRLCGSG 93 (400)
T ss_pred ccCCCCccCCCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccccHHHHHHHHcCCCCCCceEEEeccchhH
Confidence 56643 4578899999999999996 599999999999998764332 2334556789974 9999999999999
Q ss_pred HHHHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 72 SSALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 72 ~~al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
+.|+.+|++.|++| +|.+|++|+|+||+.|+
T Consensus 94 ~~Av~~A~~~I~sG~~divlagGvEsmS~~p~ 125 (400)
T PRK13359 94 MDAVGVAARAIKSGEAALMIAGGVESMSRAPF 125 (400)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeeeeccCCCcc
Confidence 99999999999999 99999999999999885
No 17
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=99.76 E-value=1e-17 Score=122.32 Aligned_cols=101 Identities=25% Similarity=0.423 Sum_probs=84.5
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHH----HHHcCCC-CCCeeeEeccchHHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRA----LYQIGMT-GIPVFNVNNNCSTGS 72 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~----a~~lg~~-~~~~~~i~~~C~sg~ 72 (110)
|+|+. ++.++.+|+.+|++++|+++|+++++||.+++|+..+++. ...+ +..+|+. .+|+++++++|+||.
T Consensus 19 f~k~~g~~~~~~~~eL~~~a~~~aL~~Agi~~~dID~vi~G~~~~~~~-~~~~~~~~~l~ag~~~~~p~~~V~~aCaSG~ 97 (397)
T PRK06954 19 MAAFQGEFASLTAPQLGAAAIAAAVERAGLKPEQIDEVVMGCVLPAGQ-GQAPARQAALGAGLPLSVGCTTVNKMCGSGM 97 (397)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEecCCCcc-chHHHHHHHHcCCCCCCccEeeccccchHHH
Confidence 55532 5788999999999999999999999999999998765443 2222 2335665 389999999999999
Q ss_pred HHHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 73 SALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 73 ~al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
.++..|+++|++| +|++|++|+|++|+.++
T Consensus 98 ~Av~~A~~~I~sG~~d~vLv~G~E~ms~~~~ 128 (397)
T PRK06954 98 RAAMFAHDMLVAGSVDVIVAGGMESMTNAPY 128 (397)
T ss_pred HHHHHHHHHHHCCCCCEEEEEeeeccCCCcc
Confidence 9999999999999 99999999999997664
No 18
>TIGR02446 FadI fatty oxidation complex, beta subunit FadI. This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli.
Probab=99.76 E-value=6.1e-18 Score=124.57 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=86.7
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHH----cCCC-CCCeeeEeccchHHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQ----IGMT-GIPVFNVNNNCSTGS 72 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~----lg~~-~~~~~~i~~~C~sg~ 72 (110)
|+|++ .+.++.+|+.++++++|+++++++++||.+++|+..+... ...+++. .|+. .+|+++|+++|+||+
T Consensus 19 fgk~~g~~~~~~~~~L~~~a~~~al~~agl~~~~Id~vi~G~~~~~~~-~~~~ar~~~l~aGl~~~~p~~~V~~~CaSG~ 97 (430)
T TIGR02446 19 FARQATAFHGIPAVDLGKMVVSELLARSEIDPKLIEQLVFGQVVQMPE-APNIAREIVLGTGMNVHTDAYSVTRACATSF 97 (430)
T ss_pred cccCCCCcCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCcCc-cchHHHHHHHhCCCCCCCchhhhhhhhhHHH
Confidence 55642 5679999999999999999999999999999998754322 2345555 6997 789999999999999
Q ss_pred HHHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 73 SALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 73 ~al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
.|+..|+++|++| +|.+|++|+|+||+.|+
T Consensus 98 ~A~~~a~~~I~sG~~dvvla~G~E~mS~~p~ 128 (430)
T TIGR02446 98 QSAVNVAESIMAGAIDIGIAGGADSSSVLPI 128 (430)
T ss_pred HHHHHHHHHHHCCCCCEEEEeeeEcccCCcc
Confidence 9999999999999 99999999999998664
No 19
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=99.75 E-value=1.8e-17 Score=120.79 Aligned_cols=102 Identities=21% Similarity=0.286 Sum_probs=84.3
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhH----HHHHcCC-CCCCeeeEeccchHHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQR----ALYQIGM-TGIPVFNVNNNCSTGS 72 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~----~a~~lg~-~~~~~~~i~~~C~sg~ 72 (110)
|||+. ++.++.+|+.++++++|+++++++++||.+++|+..+....... ..-..|+ .++|+++++++|+||+
T Consensus 14 fgk~~g~~~~~~~~~L~~~a~~~al~~a~l~~~~Id~vi~G~~~~~~~~~~~~ar~~~l~~gl~~~vP~~tV~~~CaSG~ 93 (390)
T PRK06504 14 GGRKGGRLAGWHPADLAAQVLDALVDRSGADPALIEDVIMGCVSQVGEQATNVARNAVLASKLPESVPGTSIDRQCGSSQ 93 (390)
T ss_pred ccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccHHHHHHHHcCCCCCCceEEEechhhHHH
Confidence 56643 47889999999999999999999999999999987532211111 2223466 3689999999999999
Q ss_pred HHHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 73 SALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 73 ~al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
.|+..|++.|++| +|.+|++|+|+||+.|+
T Consensus 94 ~Ai~~A~~~I~sG~~dvvLagGvEsmS~~p~ 124 (390)
T PRK06504 94 QALHFAAQAVMSGTMDIVIAAGVESMTRVPM 124 (390)
T ss_pred HHHHHHHHHHHCCCCCEEEEeeeeecCCCcc
Confidence 9999999999999 99999999999998875
No 20
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=99.75 E-value=1.3e-17 Score=121.66 Aligned_cols=97 Identities=25% Similarity=0.390 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCc---chhHHHHHcCCC-CCCeeeEeccchHHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDST---CGQRALYQIGMT-GIPVFNVNNNCSTGSSALMLAKQF 81 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~---~~~~~a~~lg~~-~~~~~~i~~~C~sg~~al~~A~~~ 81 (110)
++.++.+|+.++++++|+++|+++++||.+++|+..+... ....++..+|+. .+|+++++++|+||+.|+..|++.
T Consensus 23 ~~~~~~~L~~~a~~~al~~agi~~~~Id~vv~G~~~~~~~g~~~~r~~~~~~Gl~~~~p~~~V~~~CaSG~~Ai~~A~~~ 102 (392)
T PRK06633 23 STTPAPMLAAHLIKDILQNSKIDPALVNEVILGQVITGGSGQNPARQTLIHAGIPKEVPGYTINKVCGSGLKSVALAANS 102 (392)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEecCccccccHHHHHHHHHCCCCCCccchhhcchhHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999998764332 112345678997 599999999999999999999999
Q ss_pred HHcC-CCeEEEEeeccCCCCCC
Q psy13271 82 IESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 82 i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
|++| +|++|++|+|+||+.|+
T Consensus 103 I~sG~~dvvla~G~E~ms~~p~ 124 (392)
T PRK06633 103 IMTGDNEIVIAGGQENMSLGMH 124 (392)
T ss_pred HHcCCCCEEEEcccccCCCCCc
Confidence 9999 99999999999997653
No 21
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=99.75 E-value=2.1e-17 Score=119.53 Aligned_cols=100 Identities=33% Similarity=0.417 Sum_probs=89.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCC---cchhHHHHHcCCCCCCeeeEeccchHHHHHHHH
Q psy13271 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDS---TCGQRALYQIGMTGIPVFNVNNNCSTGSSALML 77 (110)
Q Consensus 1 f~~~~~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~---~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~ 77 (110)
|+|+ .+.++.+|+.+|++++|+++|+++++||.+++++..++. ..+..++..+|+.+.+.++++++|+|+..++..
T Consensus 8 ~~~~-~~~~~~eL~~~A~~~Al~dagl~~~~Id~vi~g~~~~~~~~~~~a~~va~~lGl~~~~~~~v~~~c~sg~~al~~ 86 (375)
T cd00829 8 FGRR-SDRSPLELAAEAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGLLGKPATRVEAAGASGSAAVRA 86 (375)
T ss_pred cccC-CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecccccccccchHHHHHHHcCCCCcceeeEeCccHHHHHHHHH
Confidence 5665 478999999999999999999999999999998876542 344567889999778999999999999999999
Q ss_pred HHHHHHcC-CCeEEEEeeccCCCCC
Q psy13271 78 AKQFIESG-SDCTLALGFEKMEKGS 101 (110)
Q Consensus 78 A~~~i~sG-~~~vlv~g~e~~s~~~ 101 (110)
|+++|++| ++++|++++|.+++.+
T Consensus 87 Aa~~I~sG~~~~vlv~g~e~~s~~~ 111 (375)
T cd00829 87 AAAAIASGLADVVLVVGAEKMSDVP 111 (375)
T ss_pred HHHHHHhCCCCEEEEEEEeecccCc
Confidence 99999999 9999999999998765
No 22
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases. This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt
Probab=99.75 E-value=2.4e-17 Score=120.06 Aligned_cols=96 Identities=24% Similarity=0.447 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcc---hhHHHHHcCCC-CCCeeeEeccchHHHHHHHHHHHHH
Q psy13271 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTC---GQRALYQIGMT-GIPVFNVNNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 7 ~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~---~~~~a~~lg~~-~~~~~~i~~~C~sg~~al~~A~~~i 82 (110)
+++..+|+.+|++++|+++|++++|||.+++++.+++... ...++..+|+. +.|+++++++|+++..++..|+++|
T Consensus 18 ~~t~~~La~~A~~~Al~dAgl~~~dID~vv~g~~~~~~~~~~~a~~va~~lGl~~~~~~~~v~~~Casg~~al~~A~~~I 97 (386)
T TIGR01930 18 DVSAEDLGAAVIKELLERNPLDPELIDDVIFGNVLQAGEQQNIARQAALLAGLPESVPAYTVNRQCASGLQAVILAAQLI 97 (386)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCCCCCceeeeecchhhHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999876554322 23466789997 4899999999999999999999999
Q ss_pred HcC-CCeEEEEeeccCCCCCC
Q psy13271 83 ESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 83 ~sG-~~~vlv~g~e~~s~~~~ 102 (110)
++| ++++|++++|.+++.+.
T Consensus 98 ~sG~~~~vLv~g~e~~s~~~~ 118 (386)
T TIGR01930 98 RAGEADVVVAGGVESMSRVPY 118 (386)
T ss_pred HCCCCCEEEEEEehhhccCcc
Confidence 999 99999999999887663
No 23
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=99.75 E-value=1.8e-17 Score=121.15 Aligned_cols=102 Identities=18% Similarity=0.308 Sum_probs=87.1
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHH-cCCCccccCeEEEEeecCCCc----chhHHHHHcCCC-CCCeeeEeccchHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDD-AGISINQVQQACCGYVYGDST----CGQRALYQIGMT-GIPVFNVNNNCSTG 71 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~-agl~~~~id~vi~~~~~~~~~----~~~~~a~~lg~~-~~~~~~i~~~C~sg 71 (110)
|||+. ++.++.+|+.++++++|++ +|+++++||.+++|+..+... .+..++..+|+. ++|+++|+++|+||
T Consensus 14 fgk~~g~l~~~~~~~L~~~a~~~al~~~agi~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl~~~vP~~tV~~aCaSG 93 (401)
T PRK09050 14 IGRYGGALSSVRADDLGAVPLKALMARNPGVDWEAVDDVIYGCANQAGEDNRNVARMSALLAGLPVSVPGTTINRLCGSG 93 (401)
T ss_pred cccCCCccCCCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccchHHHHHHHHcCCCCCCceEEEecccccH
Confidence 56643 4788999999999999995 799999999999998754221 222366789995 59999999999999
Q ss_pred HHHHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 72 SSALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 72 ~~al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
..|+..|++.|++| +|++|++|+|+||+.|+
T Consensus 94 ~~Ai~~A~~~I~sG~~dvvlagGvEsmS~~p~ 125 (401)
T PRK09050 94 MDAVGTAARAIKAGEAELMIAGGVESMSRAPF 125 (401)
T ss_pred HHHHHHHHHHHHCCCCCEEEEecccccccCcc
Confidence 99999999999999 99999999999998875
No 24
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=99.75 E-value=2.6e-17 Score=116.31 Aligned_cols=94 Identities=19% Similarity=0.284 Sum_probs=79.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHH
Q psy13271 2 QKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQF 81 (110)
Q Consensus 2 ~~~~~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~ 81 (110)
|....+.+..+|+.+|+++||+++|++++|||.+++++..........+++.||+ |.++++++|+++..+|..|..+
T Consensus 42 g~ks~EkAe~eLa~eAa~~ALekAGL~~~DID~IIvGdl~~Q~~~As~vA~~LGI---P~fdV~~ACSTf~~AL~lAa~l 118 (327)
T TIGR02845 42 GEDSWEKAERKLMEDAVNLALKKANLKKDDVDFFLAGDLLNQIITANFVARDLGI---PFLGLYGACSTSMETLALGAML 118 (327)
T ss_pred CCcCcchhHHHHHHHHHHHHHHHcCCCHHHCCEEEEeCCCCcccHHHHHHHHhCC---CEEEEeccCHHHHHHHHHHHHH
Confidence 4433567888999999999999999999999999998753333344567788886 6799999999999999999999
Q ss_pred HHcC-CCeEEEEeeccCC
Q psy13271 82 IESG-SDCTLALGFEKME 98 (110)
Q Consensus 82 i~sG-~~~vlv~g~e~~s 98 (110)
|++| +++|||++++.++
T Consensus 119 I~SG~ad~VLVV~Ssh~S 136 (327)
T TIGR02845 119 VDGGFADRVLAATSSHYA 136 (327)
T ss_pred HhCCCCCEEEEEEecccc
Confidence 9999 9999999977666
No 25
>PRK08256 lipid-transfer protein; Provisional
Probab=99.75 E-value=2.3e-17 Score=120.25 Aligned_cols=101 Identities=65% Similarity=1.064 Sum_probs=87.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCCCCeeeEeccchHHHHHHHHHHH
Q psy13271 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQ 80 (110)
Q Consensus 1 f~~~~~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~ 80 (110)
|++..++.+..+|+.+|++++|+++|+++++||.+++++..++......+...+|+.++++++++++|+|+..+|..|++
T Consensus 13 ~~~~~~~~~~~~La~~A~~~Al~dAGl~~~dID~~~~g~~~~~~~~~~~~~~~lGl~~~~~~~v~~~caSg~~ai~~A~~ 92 (391)
T PRK08256 13 FEKPGASWDYPDMAAEAGRAALADAGIDYDAVQQAYVGYVYGDSTSGQRALYEVGMTGIPIVNVNNNCSTGSTALFLARQ 92 (391)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCChHHCCeeEEEEEeCCcchhHHHHHHcCCCCCCCcccccccHHHHHHHHHHHH
Confidence 45532357889999999999999999999999999998776655444456678999878899999999999999999999
Q ss_pred HHHcC-CCeEEEEeeccCCCCC
Q psy13271 81 FIESG-SDCTLALGFEKMEKGS 101 (110)
Q Consensus 81 ~i~sG-~~~vlv~g~e~~s~~~ 101 (110)
+|++| +|++|++++|.++..+
T Consensus 93 ~I~sG~~d~vLv~g~e~~s~~~ 114 (391)
T PRK08256 93 AVRSGAADCALALGFEQMQPGA 114 (391)
T ss_pred HHHCCCCCEEEEEEEeeccccc
Confidence 99999 9999999999988654
No 26
>PLN02287 3-ketoacyl-CoA thiolase
Probab=99.75 E-value=2.6e-17 Score=121.85 Aligned_cols=97 Identities=25% Similarity=0.388 Sum_probs=84.7
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchh----HHHHHcCCCC-CCeeeEeccchHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQ----RALYQIGMTG-IPVFNVNNNCSTGSSALMLAKQ 80 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~----~~a~~lg~~~-~~~~~i~~~C~sg~~al~~A~~ 80 (110)
++.++.+|+.+|++++|+++|++++|||.+++|+..+.+..+. .++..+|+.+ .|+++++++|+||..++..|++
T Consensus 67 ~~~s~~eLa~eA~~~AL~dAgl~~~dID~vv~G~~~~~~~~~~~~~r~~a~~~Gl~~~~pa~~V~~~CaSG~~Ai~~Aa~ 146 (452)
T PLN02287 67 KDTYPDDLLAPVLKAVVEKTGLNPSEVGDIVVGTVLAPGSQRANECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAA 146 (452)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeecCcccccchHHHHHHHHCCCCCCcceEEEeccCchHHHHHHHHHH
Confidence 4689999999999999999999999999999998765443222 3456789974 8999999999999999999999
Q ss_pred HHHcC-CCeEEEEeeccCCCCCC
Q psy13271 81 FIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 81 ~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
+|++| +|++|++|+|++++.++
T Consensus 147 ~I~sG~~dvvLv~GvE~mS~~p~ 169 (452)
T PLN02287 147 AIKAGFYDIGIGAGVESMTTNPM 169 (452)
T ss_pred HHHcCCCCeEEEEeEEecCCCch
Confidence 99999 99999999999998763
No 27
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=99.74 E-value=2.4e-17 Score=120.21 Aligned_cols=96 Identities=19% Similarity=0.274 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcc----hhHHHHHcCCC-CCCeeeEeccchHHHHHHHHHHHH
Q psy13271 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTC----GQRALYQIGMT-GIPVFNVNNNCSTGSSALMLAKQF 81 (110)
Q Consensus 7 ~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~----~~~~a~~lg~~-~~~~~~i~~~C~sg~~al~~A~~~ 81 (110)
+.++.+|+.+|++++|+++|+.+++||.+++++..++... +..++..+|+. ++|+++++++|+||..++..|+.+
T Consensus 24 ~~~~~eLa~~A~~~AL~~ag~~~~dID~vi~g~~~~~~~~g~~~a~~~~~~lGl~~~~p~~~V~~aCaSG~~Al~~A~~~ 103 (391)
T PRK07661 24 TVRPDDLGALVVKETLKRAGNYEGPIDDLIIGCAMPEAEQGLNMARNIGALAGLPYTVPAITINRYCSSGLQSIAYGAER 103 (391)
T ss_pred CCCHHHHHHHHHHHHHHhcCCChhHCCEEEEEeccccccccchHHHHHHHHcCCCCCcceeehhhhhhHHHHHHHHHHHH
Confidence 6689999999999999999988899999999987654321 22366789997 489999999999999999999999
Q ss_pred HHcC-CCeEEEEeeccCCCCCC
Q psy13271 82 IESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 82 i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
|++| +|++||+|+|++++.|+
T Consensus 104 I~sG~~d~vLv~G~E~ms~~~~ 125 (391)
T PRK07661 104 IMLGHSEAVIAGGAESMSLVPM 125 (391)
T ss_pred HHcCCCCEEEEEEEeecccCCc
Confidence 9999 99999999999998775
No 28
>PRK05790 putative acyltransferase; Provisional
Probab=99.74 E-value=3.6e-17 Score=119.26 Aligned_cols=102 Identities=28% Similarity=0.408 Sum_probs=85.1
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCC--cchh-HHHHHcCCC-CCCeeeEeccchHHHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDS--TCGQ-RALYQIGMT-GIPVFNVNNNCSTGSS 73 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~--~~~~-~~a~~lg~~-~~~~~~i~~~C~sg~~ 73 (110)
|+|+. +++++.+|+.+|++++|+++|++++|||.+++++..+.. ..+. .+...+|+. +.+.++++++|+|+..
T Consensus 14 ~~r~~g~~~~~~~~~La~~A~~~AL~dAgl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~gl~~~~~~~~v~~~Casg~~ 93 (393)
T PRK05790 14 IGKFGGALKDVSAVELGAIVIKAALERAGVPPEQVDEVIMGQVLQAGAGQNPARQAALKAGLPVEVPALTINKVCGSGLK 93 (393)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCeEEEEEecCCCCCCcHHHHHHHHcCCCCCCceeeecccchHHHH
Confidence 55542 368999999999999999999999999999998765422 1222 244567886 5789999999999999
Q ss_pred HHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 74 ALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 74 al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
++..|+++|++| ++++|++|+|.+|+.+.
T Consensus 94 al~~A~~~I~sG~~d~vLv~G~e~~s~~~~ 123 (393)
T PRK05790 94 AVALAAQAIRAGDADIVVAGGQESMSQAPH 123 (393)
T ss_pred HHHHHHHHHHcCCCCEEEEEeeeccccCcc
Confidence 999999999999 99999999999987764
No 29
>TIGR02430 pcaF beta-ketoadipyl CoA thiolase. Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid.
Probab=99.74 E-value=2.7e-17 Score=120.24 Aligned_cols=102 Identities=20% Similarity=0.307 Sum_probs=87.3
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHH-cCCCccccCeEEEEeecCCCc----chhHHHHHcCCC-CCCeeeEeccchHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDD-AGISINQVQQACCGYVYGDST----CGQRALYQIGMT-GIPVFNVNNNCSTG 71 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~-agl~~~~id~vi~~~~~~~~~----~~~~~a~~lg~~-~~~~~~i~~~C~sg 71 (110)
|||+. ++.++.+|+.++++++|++ +++++++||.+++|+..+... .+..++..+|+. .+|+++|+++|+||
T Consensus 13 fgk~~g~~~~~~~~~L~~~a~~~al~~~a~i~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl~~~~p~~~V~~~CaSG 92 (400)
T TIGR02430 13 IGRYGGSLSSVRADDLAAVPIKALLARNPQLDWAAIDDVIYGCANQAGEDNRNVARMAALLAGLPVSVPGTTVNRLCGSG 92 (400)
T ss_pred cccCCCccCCCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccccHHHHHHHHcCCCCCCceEEeechhhhH
Confidence 56643 4788899999999999995 799999999999998753221 223467789997 59999999999999
Q ss_pred HHHHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 72 SSALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 72 ~~al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
+.|+..|++.|++| +|.+|++|+|+||+.|+
T Consensus 93 ~~Ai~~a~~~I~sG~~d~~la~G~E~ms~~p~ 124 (400)
T TIGR02430 93 LDAIGMAARAIKAGEADLLIAGGVESMSRAPF 124 (400)
T ss_pred HHHHHHHHHHHHCCCCCEEEEeccccccCCcc
Confidence 99999999999999 99999999999998874
No 30
>PTZ00455 3-ketoacyl-CoA thiolase; Provisional
Probab=99.74 E-value=3e-17 Score=121.12 Aligned_cols=97 Identities=25% Similarity=0.356 Sum_probs=82.2
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccc--cCeEEEEeecCCCc-----chhHHH-------HHcCCCCCCeeeEeccchHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQ--VQQACCGYVYGDST-----CGQRAL-------YQIGMTGIPVFNVNNNCSTG 71 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~--id~vi~~~~~~~~~-----~~~~~a-------~~lg~~~~~~~~i~~~C~sg 71 (110)
++.+..+|+.+|++++|+++|++++| ||.+++++..+... ....++ ..+|+..+|+++++++|+||
T Consensus 44 ~~~s~~eL~~~a~~~al~~agl~~~d~~ID~vi~G~~~~~~~~~~~~~a~~~~~~~gl~~~~~gl~~~p~~~V~~~caSG 123 (438)
T PTZ00455 44 ENKTLEELLATAIQGTLENTGLDGKAALVDKVVVGNFLGELFSSQGHLGPAAVGSLGQSGASNALLYKPAMRVEGACASG 123 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCcCEEEEEeccccccccccchHHHHHHhccCcccccccCCCceeEEECcCHHH
Confidence 57899999999999999999999999 99999987654321 122233 33466678999999999999
Q ss_pred HHHHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 72 SSALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 72 ~~al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
..|+..|+++|++| +|++|++|+|++++.++
T Consensus 124 ~~Ai~~A~~~I~sG~~dvvlv~G~E~ms~~~~ 155 (438)
T PTZ00455 124 GLAVQSAWEALLAGTSDIALVVGVEVQTTVSA 155 (438)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEeecccCcc
Confidence 99999999999999 99999999999988764
No 31
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=99.74 E-value=3.6e-17 Score=119.12 Aligned_cols=97 Identities=28% Similarity=0.402 Sum_probs=84.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCC-----cchhHHHHHcCCCCCCeeeEeccchHHHHHHH
Q psy13271 2 QKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDS-----TCGQRALYQIGMTGIPVFNVNNNCSTGSSALM 76 (110)
Q Consensus 2 ~~~~~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~-----~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~ 76 (110)
+++ +++++.+|+.+|+++||+++|++++|||.+++++ .++. ..+..+++.||+.+.++++++++|+++..++.
T Consensus 17 ~~~-~~~s~~eL~~eAa~~Al~dAgl~~~dID~iv~~~-~~~~~~~~~~~~~~va~~LGl~~~~~~~v~~~casg~~al~ 94 (386)
T PRK08313 17 AKR-QDVSMAGLVREAIDRALADAGLTWDDIDAVVVGK-APDFFEGVMMPELFLADALGATGKPLIRVHTAGSVGGSTAV 94 (386)
T ss_pred ccC-CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEec-cccccccccCchHHHHHhcCCCCCceEEEeccCHHHHHHHH
Confidence 444 5789999999999999999999999999999886 3332 23356788999988899999999999999999
Q ss_pred HHHHHHHcC-CCeEEEEeeccCCCC
Q psy13271 77 LAKQFIESG-SDCTLALGFEKMEKG 100 (110)
Q Consensus 77 ~A~~~i~sG-~~~vlv~g~e~~s~~ 100 (110)
.|+.+|++| +++|||+++|.+++.
T Consensus 95 ~A~~~I~sG~~~~vLVvg~e~~s~~ 119 (386)
T PRK08313 95 VAASLVQSGVYRRVLAVAWEKQSES 119 (386)
T ss_pred HHHHHHHCCCCCEEEEEEEEEccCC
Confidence 999999999 999999999988654
No 32
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=99.74 E-value=4e-17 Score=118.94 Aligned_cols=102 Identities=27% Similarity=0.389 Sum_probs=86.2
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCc---chhHHHHHcCCC-CCCeeeEeccchHHHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDST---CGQRALYQIGMT-GIPVFNVNNNCSTGSS 73 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~---~~~~~a~~lg~~-~~~~~~i~~~C~sg~~ 73 (110)
|+|+. ++.++.+|+.++++++|+|+|++++|||.+++++..+... ....++..+|+. ++|.++++++|+||+.
T Consensus 14 ~gr~~g~~~~~~~~~L~~~a~~~al~dagi~~~dID~vi~g~~~~~~~~~~~a~~~~~~~Gl~~~~p~~~v~~~caSg~~ 93 (388)
T PRK06366 14 IGKFGRSFSKIKAPQLGGAAIKAVIDDAKLDPALVQEVIMGNVIQAGVGQNPAGQAAYHAGLPFGVTKYTVNVVCASGML 93 (388)
T ss_pred cccCCCcccCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCCccCcHHHHHHHHCCCCCCCcceeeechhhHHHH
Confidence 56643 2589999999999999999999999999999987643321 123466789996 5899999999999999
Q ss_pred HHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 74 ALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 74 al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
++..|++.|++| +|++|++|+|++++.++
T Consensus 94 av~~Aa~~I~sG~~d~vla~G~e~ms~~~~ 123 (388)
T PRK06366 94 AVESAAREIMLGERDLVIAGGMENMSNAPF 123 (388)
T ss_pred HHHHHHHHHhcCCCCEEEEEeeEccccCcc
Confidence 999999999999 99999999999987654
No 33
>PRK07516 acetyl-CoA acetyltransferase; Provisional
Probab=99.74 E-value=3.9e-17 Score=118.96 Aligned_cols=101 Identities=27% Similarity=0.296 Sum_probs=84.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCc----ch-hHHHHHcCCCCCCeeeEeccchHHHHHH
Q psy13271 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDST----CG-QRALYQIGMTGIPVFNVNNNCSTGSSAL 75 (110)
Q Consensus 1 f~~~~~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~----~~-~~~a~~lg~~~~~~~~i~~~C~sg~~al 75 (110)
|+|+ ++++..+|+.+|++++|+++|+++++||.+++++..++.. .. ..+...+|++..|+++++++|+||..+|
T Consensus 14 fgr~-~~~~~~eL~~eA~~~AL~dAgl~~~dId~vi~g~~~~~~~~~~~~~~~~~~~~~gl~~~p~~~v~~~CaSg~~Al 92 (389)
T PRK07516 14 FGKL-DAETLESLIVRVAREALAHAGIAAGDVDGIFLGHFNAGFSPQDFPASLVLQADPALRFKPATRVENACATGSAAV 92 (389)
T ss_pred eeec-CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEecCCccccccchhHHHHHhcCCCCCceeeeccccHHHHHHH
Confidence 5665 6889999999999999999999999999999987643321 11 1223456777789999999999999999
Q ss_pred HHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 76 MLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 76 ~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
..|+.+|++| +|++|++++|++++.+.
T Consensus 93 ~~A~~~I~sG~~d~vLvvg~e~~s~~~~ 120 (389)
T PRK07516 93 YAALDAIEAGRARIVLVVGAEKMTATPT 120 (389)
T ss_pred HHHHHHHHCCCCCEEEEEEehhhccCcc
Confidence 9999999999 99999999999987654
No 34
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=99.74 E-value=4.5e-17 Score=119.92 Aligned_cols=102 Identities=25% Similarity=0.344 Sum_probs=86.3
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCc---chhHHHHHcCCC-CCCeeeEeccchHHHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDST---CGQRALYQIGMT-GIPVFNVNNNCSTGSS 73 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~---~~~~~a~~lg~~-~~~~~~i~~~C~sg~~ 73 (110)
|+|+. ++.++.+|+.+|++++|+++|+++++||.+++++..+... .+..++..+|+. ++|.++++++|+|+..
T Consensus 15 ~g~~~g~~~~~~~~~L~~~A~~~Al~dAgl~~~dID~vi~g~~~~~~~~~~~a~~v~~~lGl~~~~p~~~v~~~CaSg~~ 94 (426)
T PRK08170 15 FLKARGGPGPFSASDLAVAAGRALLNRQPFAPDDLDEVILGCAMPSPDEANIARVVALRLGCGEKVPAWTVQRNCASGMQ 94 (426)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCcChHHHHHHHHhCcCCCceeeeccchhhHHHH
Confidence 55532 3579999999999999999999999999999987653221 123467889995 6899999999999999
Q ss_pred HHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 74 ALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 74 al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
++..|+++|++| +|++|++|+|++|+.++
T Consensus 95 al~~A~~~I~sG~~d~vLv~G~E~ms~~~~ 124 (426)
T PRK08170 95 ALDSAAANIALGRADLVLAGGVEAMSHAPL 124 (426)
T ss_pred HHHHHHHHHHCCCCCEEEEEEEecccCCcc
Confidence 999999999999 99999999999887653
No 35
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=99.73 E-value=5.2e-17 Score=118.51 Aligned_cols=95 Identities=39% Similarity=0.646 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCC---cchh-HHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHH
Q psy13271 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDS---TCGQ-RALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 7 ~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~---~~~~-~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i 82 (110)
...+.+|+.+|++++|+++++++++||.+++++..+++ ..+. .+.+.+|+.++|+++++++|+||+.++..|+++|
T Consensus 20 ~~~~~el~~~a~~~Al~~agl~p~dID~vi~g~~~~~~~g~~~~~~~~~~~lg~~~~p~~~V~~~Casg~~al~~A~~~I 99 (393)
T cd00826 20 NDLAHEAGAKAIAAALEPAGVAAGAVEEACLGQVLGAGEGQNCAQQAAMHAGGLQEAPAIGMNNLCGSGLRALALAMQLI 99 (393)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEccCCcccCcHHHHHHHHcCCCCCCcEEEecchhHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999887653 2222 2556788888899999999999999999999999
Q ss_pred HcC-CCeEEEEeeccCCCCC
Q psy13271 83 ESG-SDCTLALGFEKMEKGS 101 (110)
Q Consensus 83 ~sG-~~~vlv~g~e~~s~~~ 101 (110)
++| ++++|++|+|+++..+
T Consensus 100 ~sG~~~~vlv~g~e~~s~~~ 119 (393)
T cd00826 100 AGGDANCILAGGFEKMETSA 119 (393)
T ss_pred HCCCCCEEEEEeeeccccCc
Confidence 999 9999999999998765
No 36
>PRK07851 acetyl-CoA acetyltransferase; Provisional
Probab=99.73 E-value=3.8e-17 Score=119.68 Aligned_cols=96 Identities=20% Similarity=0.268 Sum_probs=83.6
Q ss_pred CCCCHHHHHHHHHHHHHHHc-CCCccccCeEEEEeecCC----CcchhHHHHHcCCCCCCeeeEeccchHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDA-GISINQVQQACCGYVYGD----STCGQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQ 80 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~a-gl~~~~id~vi~~~~~~~----~~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~ 80 (110)
++.++.+|+.+|++++|+++ |++++|||.+++++..+. ...+..++..+|+.++|+++++++|+||..++..|++
T Consensus 23 ~~~~~~eL~~~A~~~AL~da~gl~~~dID~vv~g~~~~~~~~g~~~~~~~a~~lGl~~~p~~~v~~~caSG~~av~~Aa~ 102 (406)
T PRK07851 23 KDMRPDDLAAQMVRAALDKVPALDPTDIDDLMLGCGLPGGEQGFNMARVVAVLLGYDFLPGTTVNRYCSSSLQTTRMAFH 102 (406)
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEcccccccccCCHHHHHHHHcCCCCCCeeeeeccchhHHHHHHHHHH
Confidence 46889999999999999997 999999999999865432 1223457788999878999999999999999999999
Q ss_pred HHHcC-CCeEEEEeeccCCCCC
Q psy13271 81 FIESG-SDCTLALGFEKMEKGS 101 (110)
Q Consensus 81 ~i~sG-~~~vlv~g~e~~s~~~ 101 (110)
+|++| +|++||+|+|++++.+
T Consensus 103 ~I~sG~~d~vLv~G~e~~s~~~ 124 (406)
T PRK07851 103 AIKAGEGDVFISAGVETVSRFA 124 (406)
T ss_pred HHHCCCCCEEEEeeEEecccCc
Confidence 99999 9999999999987765
No 37
>PRK06289 acetyl-CoA acetyltransferase; Provisional
Probab=99.73 E-value=4.7e-17 Score=119.02 Aligned_cols=102 Identities=25% Similarity=0.426 Sum_probs=83.4
Q ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch-----hH-HHHHcCCCCCCeeeEeccchHHH
Q psy13271 1 FQKPK--EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG-----QR-ALYQIGMTGIPVFNVNNNCSTGS 72 (110)
Q Consensus 1 f~~~~--~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~-----~~-~a~~lg~~~~~~~~i~~~C~sg~ 72 (110)
|+|+. +++++.+|+.+|++++|+++|+++++||.+|+++..++.... .. .....++.++|+++++++|+++.
T Consensus 15 ~~r~~~~~~~s~~eLa~eA~~~AL~dAgl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~Casg~ 94 (403)
T PRK06289 15 FARNWTKEGRDFADLTREVVDGTLAAAGVDADDIEVVHVGNFFGELFAGQGHLGAMPATVHPALWGVPASRHEAACASGS 94 (403)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccccchHHHHHhhcCCCCceeecccccHHHH
Confidence 45532 578999999999999999999999999999998765543221 11 12334565678999999999999
Q ss_pred HHHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 73 SALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 73 ~al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
.+|..|+.+|++| +++|||+++|++++.+.
T Consensus 95 ~al~~Aa~~I~sG~~~~VLvvg~e~~s~~~~ 125 (403)
T PRK06289 95 VATLAAMADLRAGRYDVALVVGVELMKTVPG 125 (403)
T ss_pred HHHHHHHHHHHcCCCCEEEEEEEEecCCCCc
Confidence 9999999999999 99999999999887653
No 38
>PRK08304 stage V sporulation protein AD; Validated
Probab=99.73 E-value=3.8e-17 Score=115.76 Aligned_cols=100 Identities=18% Similarity=0.285 Sum_probs=84.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCCCCeeeEeccchHHHHHHHHHHH
Q psy13271 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQ 80 (110)
Q Consensus 1 f~~~~~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~ 80 (110)
||+...+....+|+.+|+++||+++|++++|||.+++++..........+++.+|+ |.++++++|+++..+|..|+.
T Consensus 47 ~Ge~swEkAeseLa~eAa~~ALekAGI~~~DID~lI~Gdll~Q~~sAs~vA~~LGI---Pa~dV~gACST~~~AL~lAa~ 123 (337)
T PRK08304 47 CGEKSWEKAERKMMEDAIQQALQKANLKKSDIDYLLAGDLLNQIISANFAARELGI---PFLGLYGACSTMMESLALGSM 123 (337)
T ss_pred cCCcCccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCcchHHHHHHHhCC---cEEEEeccCHHHHHHHHHHHH
Confidence 34333467888999999999999999999999999999764333344567788876 899999999999999999999
Q ss_pred HHHcC-CCeEEEEeeccCCCCCCC
Q psy13271 81 FIESG-SDCTLALGFEKMEKGSLG 103 (110)
Q Consensus 81 ~i~sG-~~~vlv~g~e~~s~~~~~ 103 (110)
+|++| +++||+++++.+++....
T Consensus 124 lI~SG~ad~VLVV~Ssh~s~aerq 147 (337)
T PRK08304 124 LIDGGFADRVLAATSSHFATAERQ 147 (337)
T ss_pred HHhcCCCCEEEEEEcchhhhhhhh
Confidence 99999 999999999988776433
No 39
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Probab=99.73 E-value=5.8e-17 Score=118.00 Aligned_cols=100 Identities=31% Similarity=0.394 Sum_probs=86.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCc-----chhHHHHHcCCCCCCeeeEeccchHHHHHH
Q psy13271 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDST-----CGQRALYQIGMTGIPVFNVNNNCSTGSSAL 75 (110)
Q Consensus 1 f~~~~~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~-----~~~~~a~~lg~~~~~~~~i~~~C~sg~~al 75 (110)
|+++ +++++.+|+.+|++++|+++|+++++||.+++++..++.. ....++..+|++..+.++++++|+|+..+|
T Consensus 14 ~~~~-~~~~~~eLa~~a~~~Al~dagl~~~~Id~vi~g~~~~~~~~~~~~~a~~va~~lGl~~~~~~~v~~aCasg~~ai 92 (389)
T PRK06064 14 FGEL-WDVSLRDLAVEAGLEALEDAGIDGKDIDAMYVGNMSAGLFVSQEHIAALIADYAGLAPIPATRVEAACASGGAAL 92 (389)
T ss_pred ceec-CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccccccccccHHHHHHHHcCCCCCCeeEEeCCcHHHHHHH
Confidence 4444 5789999999999999999999999999999987654432 223467889998779999999999999999
Q ss_pred HHHHHHHHcC-CCeEEEEeeccCCCCC
Q psy13271 76 MLAKQFIESG-SDCTLALGFEKMEKGS 101 (110)
Q Consensus 76 ~~A~~~i~sG-~~~vlv~g~e~~s~~~ 101 (110)
..|+++|++| ++++||++.|.+++.+
T Consensus 93 ~~A~~~I~sG~~~~vLv~G~e~~s~~~ 119 (389)
T PRK06064 93 RQAYLAVASGEADVVLAAGVEKMTDVP 119 (389)
T ss_pred HHHHHHHHCCCCCEEEEEEEEecccCc
Confidence 9999999999 9999999999988665
No 40
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=99.73 E-value=6.5e-17 Score=115.21 Aligned_cols=96 Identities=29% Similarity=0.333 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch--hHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG--QRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIE 83 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~--~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i~ 83 (110)
++++..+|+.+|++++|+++|+++++||.++++++.++...+ ..++..||+++.++++++++|++++.+|.+|.++|+
T Consensus 47 ~~~~~~~la~~A~~~aL~~ag~~~~dId~vi~~s~~~~~~~~~~~~v~~~Lg~~~~~~~~v~~~Casg~~al~~A~~~i~ 126 (326)
T CHL00203 47 SSTSLTKLAAEAANKALDKAHMDPLEIDLIILATSTPDDLFGSASQLQAEIGATRAVAFDITAACSGFILALVTATQFIQ 126 (326)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeCCCCCCCchHHHHHHHhCCCCCceeeecccchhHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999876654322 346788999888999999999999999999999999
Q ss_pred cC-CCeEEEEeeccCCCCC
Q psy13271 84 SG-SDCTLALGFEKMEKGS 101 (110)
Q Consensus 84 sG-~~~vlv~g~e~~s~~~ 101 (110)
+| ++++||+++|.+++..
T Consensus 127 sg~~~~~Lvv~~e~~s~~~ 145 (326)
T CHL00203 127 NGSYKNILVVGADTLSKWI 145 (326)
T ss_pred cCCCCEEEEEEehhhhCcC
Confidence 99 9999999999988654
No 41
>PRK06365 acetyl-CoA acetyltransferase; Provisional
Probab=99.73 E-value=7.4e-17 Score=118.87 Aligned_cols=102 Identities=25% Similarity=0.403 Sum_probs=85.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCc----chhHHHHHcCCCCCCeeeEeccchHHHHHHH
Q psy13271 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDST----CGQRALYQIGMTGIPVFNVNNNCSTGSSALM 76 (110)
Q Consensus 1 f~~~~~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~----~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~ 76 (110)
|+|..++.+..+|+.+|++++|+++|++++|||.+++++...... ....++..+|++++|+++++++|+|+..++.
T Consensus 28 fgr~~~~~~~~eL~~eA~~~Al~dagl~~~dID~vv~~~~~~~~~g~~~~~~~~~~~lGl~~~~~~~v~~~~aSg~~ai~ 107 (430)
T PRK06365 28 FDKASPYMDFRERVKKAFDYAMNDAGLTLADIDGSVASYFSDHFQRQLLAGIMVQDYLGLVPKPSKRIEGGGATGGLAFQ 107 (430)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEecccccccccchhhHHHHHhcCCCCCceEEEeCCcHHHHHHHH
Confidence 566434678899999999999999999999999988765432111 1223568899988899999999999999999
Q ss_pred HHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 77 LAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 77 ~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
.|+..|++| +++||++++|++++.++
T Consensus 108 ~A~~~I~sG~~~~vLv~G~e~~s~~~~ 134 (430)
T PRK06365 108 AGYEEIASGRMDCVAVYGFETMSHVNT 134 (430)
T ss_pred HHHHHHHcCCCCEEEEEEeeecccccc
Confidence 999999999 99999999999887653
No 42
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=99.72 E-value=1.2e-16 Score=116.66 Aligned_cols=97 Identities=29% Similarity=0.281 Sum_probs=83.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCc-----chhHHHHHcCCCCCCeeeEeccchHHHHHH
Q psy13271 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDST-----CGQRALYQIGMTGIPVFNVNNNCSTGSSAL 75 (110)
Q Consensus 1 f~~~~~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~-----~~~~~a~~lg~~~~~~~~i~~~C~sg~~al 75 (110)
|+++ .+++..+|+.+|++++|+++|++++|||.+++++. ++.. ....+++.+|+.+.+.++++++|++|..++
T Consensus 21 ~~~~-~~~~~~~L~~~A~~~Al~dagl~~~dID~~i~~~~-~~~~~~~~~~a~~l~~~lG~~~~~~~~V~~~gasG~~al 98 (392)
T PRK06065 21 FRRR-LLETPQELAWEAASKALDEAGLELKDIDCVVIGSA-PDAFDGVHMKGEYLSHGSGGIRKPVSRVYVGGATGVMTA 98 (392)
T ss_pred CcCC-CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecc-CCcccccccHHHHHHHHcCCCCCCeEEEecCchhHHHHH
Confidence 5665 67899999999999999999999999999998753 2222 233577889988789999999999999999
Q ss_pred HHHHHHHHcC-CCeEEEEeeccCCC
Q psy13271 76 MLAKQFIESG-SDCTLALGFEKMEK 99 (110)
Q Consensus 76 ~~A~~~i~sG-~~~vlv~g~e~~s~ 99 (110)
..|+.+|++| +|+|||+++|+++.
T Consensus 99 ~~A~~~I~sG~ad~vLVvg~e~~~~ 123 (392)
T PRK06065 99 IAGWYHVASGLCQKVLAVAEEKMSP 123 (392)
T ss_pred HHHHHHHhCCCCCEEEEEEeecccc
Confidence 9999999999 99999999999754
No 43
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=99.72 E-value=1.6e-16 Score=112.85 Aligned_cols=96 Identities=22% Similarity=0.296 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch---hHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG---QRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~---~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i 82 (110)
++++..+|+.+|++++|+++|+++++||.+++++..+++..+ ..++..+|+++.++++++++|+++..+|..|.++|
T Consensus 49 ~~~~~~~la~~A~~~al~~ag~~~~~Id~li~~~~~~~~~~~~~a~~l~~~lg~~~~~~~~v~~~C~~~~~al~~A~~~l 128 (325)
T PRK12879 49 VEEYTSDLAIKAAERALARAGLDAEDIDLIIVATTTPDYLFPSTASQVQARLGIPNAAAFDINAACAGFLYGLETANGLI 128 (325)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCChHHHHHHHHhCCCCCcEEEECccchHHHHHHHHHHHHH
Confidence 467899999999999999999999999999998877655433 35678899987789999999999999999999999
Q ss_pred HcC-CCeEEEEeeccCCCCC
Q psy13271 83 ESG-SDCTLALGFEKMEKGS 101 (110)
Q Consensus 83 ~sG-~~~vlv~g~e~~s~~~ 101 (110)
++| .+++||+++|.++...
T Consensus 129 ~~g~~~~~Lvv~~e~~s~~~ 148 (325)
T PRK12879 129 TSGLYKKVLVIGAERLSKVT 148 (325)
T ss_pred HcCCCCEEEEEEehhhcCcC
Confidence 999 9999999999987653
No 44
>PRK06059 lipid-transfer protein; Provisional
Probab=99.71 E-value=1.2e-16 Score=116.81 Aligned_cols=97 Identities=29% Similarity=0.378 Sum_probs=83.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCc----chhHHHHHcCCCCCCeeeEeccchHHHHHHH
Q psy13271 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDST----CGQRALYQIGMTGIPVFNVNNNCSTGSSALM 76 (110)
Q Consensus 1 f~~~~~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~----~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~ 76 (110)
|+|+ +.+..+|+.+|++++|+++|+++++||.+++++..++.. .+..++..+|+++.+.++++++|+++..+|.
T Consensus 16 ~~r~--~~~~~~La~~A~~~Al~dAgl~~~dId~vi~~~~~~~~~~~~~~a~~va~~lG~~~~~~~~v~~~Casg~~al~ 93 (399)
T PRK06059 16 WGKW--GRDFVEYGVVAARAALADAGLDWRDVQLVVGADTIRNGYPGFVAGATFAQALGWNGAPVSSSYAACASGSQALQ 93 (399)
T ss_pred cCCC--CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCccCCccHHHHHHHHhCCCCCceecccchhHHHHHHHH
Confidence 5553 568899999999999999999999999999876543321 1245778899987889999999999999999
Q ss_pred HHHHHHHcC-CCeEEEEeeccCCC
Q psy13271 77 LAKQFIESG-SDCTLALGFEKMEK 99 (110)
Q Consensus 77 ~A~~~i~sG-~~~vlv~g~e~~s~ 99 (110)
.|+++|++| ++++||+++|.++.
T Consensus 94 ~A~~~I~sG~~~~vLvvg~e~~s~ 117 (399)
T PRK06059 94 SARAQILAGLCDVALVVGADTTPK 117 (399)
T ss_pred HHHHHHHCCCCCEEEEEEEcccCC
Confidence 999999999 99999999999875
No 45
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=99.71 E-value=1.1e-16 Score=116.23 Aligned_cols=94 Identities=26% Similarity=0.320 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchh---HHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHHHc
Q psy13271 8 TDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQ---RALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIES 84 (110)
Q Consensus 8 ~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~---~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i~s 84 (110)
.+..+|+.+|++++|+++|++++|||.+|+++..+++..+. .++..+|+++.++++++++|++++.+|..|..+|++
T Consensus 61 ~~~~~La~~A~~~aL~~agi~~~dId~li~~s~~~~~~~p~~a~~v~~~Lgl~~~~~~~v~~~Cas~~~al~~A~~~i~s 140 (378)
T PRK06816 61 HSNAQMAAEAIRDLLDDAGFSLGDIELLACGTSQPDQLMPGHASMVHGELGAPPIEVVSSAGVCAAGMMALKYAYLSVKA 140 (378)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEECCCCcCChHHHHHHHhhCCCCCCceeeecCcCHHHHHHHHHHHHHHHC
Confidence 57899999999999999999999999999998877655443 466789998789999999999999999999999999
Q ss_pred C-CCeEEEEeeccCCCCC
Q psy13271 85 G-SDCTLALGFEKMEKGS 101 (110)
Q Consensus 85 G-~~~vlv~g~e~~s~~~ 101 (110)
| .+++||+++|.+|+..
T Consensus 141 g~~~~vLvv~~E~~s~~~ 158 (378)
T PRK06816 141 GESRNAVATASELASRWF 158 (378)
T ss_pred CCCCEEEEEeEccchhhh
Confidence 9 9999999999987653
No 46
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=99.71 E-value=1.6e-16 Score=115.49 Aligned_cols=97 Identities=25% Similarity=0.284 Sum_probs=86.4
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcc--hhHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTC--GQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIE 83 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~--~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i~ 83 (110)
++++..+|+.+|++++|+++|++++|||.+|+++.+++..+ ...+++.||+++.++++++.+|++++.+|.+|.++|+
T Consensus 92 ~~~~~~~La~~Aa~~aL~~agi~~~dId~li~~s~~~~~~~~~a~~v~~~LG~~~~~~~dv~~~Ca~~~~aL~~A~~~l~ 171 (379)
T PLN02326 92 GDETLTSLAVEAAKKALEMAGVDPEDVDLVLLCTSSPDDLFGSAPQVQAALGCTNALAFDLTAACSGFVLGLVTAARFIR 171 (379)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeCCCCccCcHHHHHHHHhCCCCCceeeccccchHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999987665433 3457788999888999999999999999999999999
Q ss_pred cC-CCeEEEEeeccCCCCCC
Q psy13271 84 SG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 84 sG-~~~vlv~g~e~~s~~~~ 102 (110)
+| ++++||+++|.+++...
T Consensus 172 ~g~~~~vLVv~~e~~s~~~~ 191 (379)
T PLN02326 172 GGGYKNVLVIGADALSRYVD 191 (379)
T ss_pred cCCCCEEEEEEechhcCCCC
Confidence 99 99999999999886543
No 47
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.71 E-value=1.6e-16 Score=113.03 Aligned_cols=96 Identities=20% Similarity=0.219 Sum_probs=86.0
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch---hHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG---QRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~---~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i 82 (110)
++++..+|+.+|++++|+++|+++++||.||++++++++..| ..+++.||+++.++++++++|++++.+|..|.+++
T Consensus 48 ~~e~~~~la~~Aa~~aL~~ag~~~~~Id~li~~t~~~d~~~p~~a~~v~~~Lg~~~~~~~di~~~C~g~~~aL~~A~~~l 127 (326)
T PRK05963 48 PDETLSDLAASAGDMALSDAGIERSDIALTLLATSTPDHLLPPSAPLLAHRLGLQNSGAIDLAGACAGFLYALVLADGFV 127 (326)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCcHHHHHHHHhCCCCCceeeccchhhHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999988876554 35788999988899999999999999999999999
Q ss_pred HcCCCeEEEEeeccCCCCC
Q psy13271 83 ESGSDCTLALGFEKMEKGS 101 (110)
Q Consensus 83 ~sG~~~vlv~g~e~~s~~~ 101 (110)
+++.+++||+++|.+++..
T Consensus 128 ~~~~~~aLVv~~d~~s~~~ 146 (326)
T PRK05963 128 RAQGKPVLVVAANILSRRI 146 (326)
T ss_pred HcCCCeEEEEEechhhccC
Confidence 9887789999999877543
No 48
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=99.71 E-value=1.4e-16 Score=114.81 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=86.7
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchh---HHHHHcCCC-CCCeeeEeccchHHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQ---RALYQIGMT-GIPVFNVNNNCSTGSSALMLAKQF 81 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~---~~a~~lg~~-~~~~~~i~~~C~sg~~al~~A~~~ 81 (110)
++++..+|+.+|++++|+++|++++|||.||+++.++++..|. .+++.||++ ++++++++.+|++++.+|..|..+
T Consensus 56 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~lI~~t~t~d~~~P~~a~~v~~~Lg~~~~~~~~di~~~C~g~~~aL~~A~~~ 135 (353)
T PRK12880 56 ENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACYLHQLLNLSSKTIAFDLGQACAGYLYGLFVAHSL 135 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCCcHHHHHHHHhCCCCCceEEehhhhhHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999998876553 577899996 578999999999999999999999
Q ss_pred HHcC-CCeEEEEeeccCCCCCCC
Q psy13271 82 IESG-SDCTLALGFEKMEKGSLG 103 (110)
Q Consensus 82 i~sG-~~~vlv~g~e~~s~~~~~ 103 (110)
+++| .+ +||+++|..|+....
T Consensus 136 i~~~~~~-~LVv~~e~~S~~~~~ 157 (353)
T PRK12880 136 IQSGLGK-ILLICGDTLSKFIHP 157 (353)
T ss_pred HHcCCCC-EEEEEehhhhccCCc
Confidence 9999 99 999999998766543
No 49
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=99.71 E-value=1.3e-16 Score=113.87 Aligned_cols=95 Identities=26% Similarity=0.243 Sum_probs=84.6
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch---hHHHHHcCCC-CCCeeeEeccchHHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG---QRALYQIGMT-GIPVFNVNNNCSTGSSALMLAKQF 81 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~---~~~a~~lg~~-~~~~~~i~~~C~sg~~al~~A~~~ 81 (110)
+++++.+|+.+|++++|+++|+++++||.+++++..+++..+ ..+++.+|++ .+++++++++|+++..||.+|.++
T Consensus 57 ~~~~~~~la~~Aa~~aL~~ag~~~~~Id~li~~s~~~~~~~p~~a~~v~~~lgl~~~~~~~~v~~~C~~~~~al~~A~~~ 136 (338)
T PRK09258 57 EGTQLSDGAIAAGRKALAEAGIDPSDIGLLINTSVCRDYLEPATACRVHHNLGLPKSCANFDVSNACLGFLNGMLDAANM 136 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCChHHHHHHHHcCCCCCCceeehhhhhHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999877665544 3567889997 478999999999999999999999
Q ss_pred HHcC-CCeEEEEeeccCCCC
Q psy13271 82 IESG-SDCTLALGFEKMEKG 100 (110)
Q Consensus 82 i~sG-~~~vlv~g~e~~s~~ 100 (110)
|++| ++++||+++|..+..
T Consensus 137 i~~g~~~~~Lvv~~e~~s~~ 156 (338)
T PRK09258 137 IELGQIDYALVVSGESAREI 156 (338)
T ss_pred HHcCCCCEEEEEEecccchh
Confidence 9999 999999999987654
No 50
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=99.71 E-value=2.3e-16 Score=111.73 Aligned_cols=95 Identities=29% Similarity=0.349 Sum_probs=84.8
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch---hHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG---QRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~---~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i 82 (110)
++++..+|+.+|++++|+++|+++++||.+++++..++...+ ..++..+|+.+.++++++++|++++.+|..|.++|
T Consensus 48 ~~~~~~~la~~A~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~~~i~~~lG~~~~~~~~v~~~Casg~~al~~A~~~i 127 (319)
T PRK09352 48 PDETTSDLATEAAKKALEAAGIDPEDIDLIIVATTTPDYAFPSTACLVQARLGAKNAAAFDLSAACSGFVYALSTADQFI 127 (319)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCchHHHHHHHHhCCCCCcEeeccccchhHHHHHHHHHHHH
Confidence 578999999999999999999999999999998876654322 45778899987899999999999999999999999
Q ss_pred HcC-CCeEEEEeeccCCCC
Q psy13271 83 ESG-SDCTLALGFEKMEKG 100 (110)
Q Consensus 83 ~sG-~~~vlv~g~e~~s~~ 100 (110)
++| ++++||+++|.+++.
T Consensus 128 ~~g~~~~vLvv~~e~~s~~ 146 (319)
T PRK09352 128 RSGAYKNVLVIGAEKLSRI 146 (319)
T ss_pred HcCCCCEEEEEEehhhccc
Confidence 999 999999999998754
No 51
>PLN02644 acetyl-CoA C-acetyltransferase
Probab=99.70 E-value=3.1e-16 Score=114.50 Aligned_cols=102 Identities=28% Similarity=0.356 Sum_probs=84.5
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCC---cchhHHHHHcCCC-CCCeeeEeccchHHHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDS---TCGQRALYQIGMT-GIPVFNVNNNCSTGSS 73 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~---~~~~~~a~~lg~~-~~~~~~i~~~C~sg~~ 73 (110)
|+|+. ++.++.+|+.++++++|+++|+++++||.+++++..... .....++..+|+. ..|+++++++|+|+..
T Consensus 13 ~g~~~~~~~~~~~~~L~~~a~~~al~dAgl~~~~ID~vv~g~~~~~~~~~~~~~~~~~~~Gl~~~~p~~~v~~~caSg~~ 92 (394)
T PLN02644 13 IGGFLGSLSSLSATELGSIAIQAALERAGVDPALVQEVFFGNVLSANLGQAPARQAALGAGLPPSTICTTVNKVCASGMK 92 (394)
T ss_pred ccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCcCCcCCcHHHHHHHhcCCCCCCceEEEeccchHHHH
Confidence 55542 358899999999999999999999999999998753211 1122366778996 4789999999999999
Q ss_pred HHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 74 ALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 74 al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
++..|+++|++| +|++|++|+|++++.++
T Consensus 93 av~~Aa~~I~sG~~d~vlv~G~E~~s~~~~ 122 (394)
T PLN02644 93 AVMLAAQSIQLGINDVVVAGGMESMSNAPK 122 (394)
T ss_pred HHHHHHHHHHcCCCCEEEEEeEEecCCCcc
Confidence 999999999999 99999999999987653
No 52
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.
Probab=99.70 E-value=1.8e-16 Score=113.92 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch---hHHHHHcCCC-CCCeeeEeccchHHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG---QRALYQIGMT-GIPVFNVNNNCSTGSSALMLAKQF 81 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~---~~~a~~lg~~-~~~~~~i~~~C~sg~~al~~A~~~ 81 (110)
++++..+|+.+|++++|+++|+++++||.+++++..+++..+ ..+++.+|++ ..++++++++|+++..+|..|..+
T Consensus 46 ~~~~~~~la~~Aa~~aL~~agl~~~dID~li~~s~~~~~~~p~~a~~v~~~LGl~~~~~~~dv~~aC~g~~~al~~A~~~ 125 (345)
T TIGR00748 46 LDEDTATIGVEAARNALKRAKIDPKDIGAVYVGSESHPYAVKPTATIVAEAIGATPDLTAADLEFACKAGTAGIQACMGL 125 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCccccchHHHHHHHcCCCCCceEEEHHHhHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999998877665433 3467889996 578999999999999999999999
Q ss_pred HHcC-CCeEEEEeeccCCC
Q psy13271 82 IESG-SDCTLALGFEKMEK 99 (110)
Q Consensus 82 i~sG-~~~vlv~g~e~~s~ 99 (110)
|++| ++++||+++|.++.
T Consensus 126 i~sg~~~~vLVv~~d~~~~ 144 (345)
T TIGR00748 126 VASGMIKYGLAIGADTAQG 144 (345)
T ss_pred HHcCCCCEEEEEEEeeccc
Confidence 9999 99999999998863
No 53
>PRK09268 acetyl-CoA acetyltransferase; Provisional
Probab=99.70 E-value=3.5e-16 Score=115.21 Aligned_cols=102 Identities=20% Similarity=0.354 Sum_probs=83.9
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCC---cchhHHHHHcCC-CCCCeeeEeccchHHHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDS---TCGQRALYQIGM-TGIPVFNVNNNCSTGSS 73 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~---~~~~~~a~~lg~-~~~~~~~i~~~C~sg~~ 73 (110)
|+++. .+.++.+|+.++++++|+++++++++||.+++|+..+.. .....++...|+ ...|+++++++|+||..
T Consensus 19 fg~~~g~l~~~~~~eL~~~a~~~al~~agl~~~~Id~vv~G~~~~~~~~~~~~r~~~l~~gl~~~~p~~~V~~~CaSG~~ 98 (427)
T PRK09268 19 FARSNGAYADASNQDMLTAALDGLVDRFGLQGERLGEVVAGAVLKHSRDFNLTRECVLGSALSPYTPAYDLQQACGTGLE 98 (427)
T ss_pred ccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccCCccccHHHHHHHHcCCCCCCceeeeechhhHHHH
Confidence 55542 468999999999999999999999999999999865321 112222333455 34799999999999999
Q ss_pred HHHHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 74 ALMLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 74 al~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
++..|+++|++| +|.+|++|+|++|+.|+
T Consensus 99 ai~~A~~~I~sG~~d~vlvgG~E~ms~~p~ 128 (427)
T PRK09268 99 AAILVANKIALGQIDSGIAGGVDTTSDAPI 128 (427)
T ss_pred HHHHHHHHHHCCCCCEEEEeeEEccCCCcc
Confidence 999999999999 99999999999998775
No 54
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=99.70 E-value=3.6e-16 Score=111.39 Aligned_cols=94 Identities=23% Similarity=0.302 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch---hHHHHHcCCCC--CCeeeEeccchHHHHHHHHHHHH
Q psy13271 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG---QRALYQIGMTG--IPVFNVNNNCSTGSSALMLAKQF 81 (110)
Q Consensus 7 ~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~---~~~a~~lg~~~--~~~~~i~~~C~sg~~al~~A~~~ 81 (110)
+++..+|+.+|++++|+++|++++|||.+|+++.+++...+ ..+++.+|+++ +++++++.+|+++..+|..|..+
T Consensus 49 ~~~~~~la~~Aa~~aL~~ag~~~~dId~li~~~~~~~~~~p~~a~~v~~~lgl~~~~~~~~~v~~~C~~~~~al~~a~~~ 128 (329)
T PRK07204 49 GETSSYMGAEAAKKAVEDAKLTLDDIDCIICASGTIQQAIPCTASLIQEQLGLQHSGIPCFDINSTCLSFITALDTISYA 128 (329)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCccHHHHHHHHhCCCCCCceEEEccchhHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999877665333 45778899974 68999999999999999999999
Q ss_pred HHcC-CCeEEEEeeccCCCC
Q psy13271 82 IESG-SDCTLALGFEKMEKG 100 (110)
Q Consensus 82 i~sG-~~~vlv~g~e~~s~~ 100 (110)
|++| ++++||+++|..+..
T Consensus 129 l~~g~~~~~Lvv~~e~~s~~ 148 (329)
T PRK07204 129 IECGRYKRVLIISSEISSVG 148 (329)
T ss_pred HHCCCCCEEEEEEeccccCC
Confidence 9999 999999999997754
No 55
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=99.69 E-value=3.4e-16 Score=110.92 Aligned_cols=95 Identities=29% Similarity=0.437 Sum_probs=84.9
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch---hHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG---QRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~---~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i 82 (110)
+++++.+|+.+|++++|+++|+++++||.+++++..+++..+ ..++..+|+++.++++++++|+++..+|..|..+|
T Consensus 47 ~~~~~~~la~~A~~~al~~agl~~~~Id~~i~~~~~~~~~~~~~a~~l~~~lGl~~~~~~~v~~~C~s~~~al~~A~~~i 126 (318)
T TIGR00747 47 DDETSSTMGFEAAKRAIENAGISKDDIDLIIVATTTPDHAFPSAACMVQAYLGIKGIPAFDLSAACAGFIYALSVAKQYI 126 (318)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCChHHHHHHHHhCCCCCcEeehhhhhHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999998877654322 35778899988899999999999999999999999
Q ss_pred HcC-CCeEEEEeeccCCCC
Q psy13271 83 ESG-SDCTLALGFEKMEKG 100 (110)
Q Consensus 83 ~sG-~~~vlv~g~e~~s~~ 100 (110)
++| ++++||+++|.++..
T Consensus 127 ~~g~~~~~Lvv~~e~~~~~ 145 (318)
T TIGR00747 127 ESGKYKTVLVVGAEKLSST 145 (318)
T ss_pred HcCCCCEEEEEEehhhcCc
Confidence 999 999999999997644
No 56
>PRK06025 acetyl-CoA acetyltransferase; Provisional
Probab=99.69 E-value=3.8e-16 Score=114.43 Aligned_cols=97 Identities=21% Similarity=0.217 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhH----HHHHcCCC-CCCeeeEeccchHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQR----ALYQIGMT-GIPVFNVNNNCSTGSSALMLAKQ 80 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~----~a~~lg~~-~~~~~~i~~~C~sg~~al~~A~~ 80 (110)
++.++.+|+..+++++|+++++++++||.||+|+..+....+.+ .+-..|+. .+|+++|+..|+||+.++..|++
T Consensus 25 ~~~~~~~L~~~~~~~~l~r~~i~~~~id~vi~G~~~~~g~~g~n~aR~~al~aglp~~vp~~tvnr~C~Sgl~ai~~aa~ 104 (417)
T PRK06025 25 AHLHPQHLAATVLKALAERNGLNTADVDDIIWSTSSQRGKQGGDLGRMAALDAGYDIKASGVTLDRFCGGGITSVNLAAA 104 (417)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCHHHCCEEEEEcCCCcCcccCcHHHHHHHhCCCCCCCCeeeeccccchHHHHHHHHHH
Confidence 78999999999999999999999999999999988654332222 33456885 58999999999999999999999
Q ss_pred HHHcC-CCeEEEEeeccCCCCCC
Q psy13271 81 FIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 81 ~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
.|++| .|.+|++|+|+||+.|+
T Consensus 105 ~I~~G~~~~~laGG~EsmS~~P~ 127 (417)
T PRK06025 105 QIMSGMEDLVIAGGTEMMSYTAA 127 (417)
T ss_pred HHHcCCCCEEEEeeeeccCCCcc
Confidence 99999 99999999999999996
No 57
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=99.69 E-value=3.5e-16 Score=114.20 Aligned_cols=97 Identities=20% Similarity=0.375 Sum_probs=80.8
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCc---chhHHH-HHcCC-CCCCeeeEeccchHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDST---CGQRAL-YQIGM-TGIPVFNVNNNCSTGSSALMLAKQ 80 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~---~~~~~a-~~lg~-~~~~~~~i~~~C~sg~~al~~A~~ 80 (110)
++.++.+|+.+|++++|+++|++++|||.+++++..++.. .....+ ...++ .++|+++++++|+||..++.+|++
T Consensus 28 ~~~~~~~L~~~a~~~AL~~agl~~~dID~vi~g~~~~~~~~~~~~~~~~~l~a~~~~~~p~~~V~~~CaSg~~ai~~A~~ 107 (394)
T PRK06445 28 NNIRPEELAAMLINRLIEKTGIKPEEIDDIITGCALQVGENWLYGGRHPIFLARLPYNIPAMAVDRQCASSLTTVSIGAM 107 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCeeEEEeecCCCcccccHHHHHHHHcCCCCCCcchhhhhhhHHHHHHHHHHHH
Confidence 4688999999999999999999999999999998776432 122221 12233 357999999999999999999999
Q ss_pred HHHcC-CCeEEEEeeccCCCCCC
Q psy13271 81 FIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 81 ~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
+|++| +|++|++|+|++++.++
T Consensus 108 ~I~sG~~d~vLv~G~e~ms~~~~ 130 (394)
T PRK06445 108 EIATGMADIVIAGGVEHMTRTPM 130 (394)
T ss_pred HHHcCCCCEEEEeeecccccCcc
Confidence 99999 99999999999997764
No 58
>TIGR02445 fadA fatty oxidation complex, beta subunit FadA. This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli.
Probab=99.68 E-value=2e-16 Score=115.18 Aligned_cols=98 Identities=21% Similarity=0.232 Sum_probs=81.2
Q ss_pred CCCCHHHHHHHHHHHHHHH-cCCCccccCeEEEEeecCCCcchhHH----HHHcCCCC-CCeeeEeccchHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDD-AGISINQVQQACCGYVYGDSTCGQRA----LYQIGMTG-IPVFNVNNNCSTGSSALMLAK 79 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~-agl~~~~id~vi~~~~~~~~~~~~~~----a~~lg~~~-~~~~~i~~~C~sg~~al~~A~ 79 (110)
++.++.+|+.++++++|++ +|+++++||.+++|+..+....+..+ ....|+.. +|+++++++|+||+.|+..|+
T Consensus 21 ~~~~~~~L~~~a~~~al~~~agl~~~~Id~v~~G~~~~~~~~g~~~ar~~~~~~g~~~~~p~~tV~~~CaSG~~Ai~~Aa 100 (385)
T TIGR02445 21 RNTRAEDLSAHLMSKLLARNPKVDPAEVEDIYWGCVQQTLEQGFNIARNAALLAQIPHTSAAVTVNRLCGSSMQALHDAA 100 (385)
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCHHHcCEEEEecccccccccchHHHHHHHHCCCCCCcchhhhhhhhHHHHHHHHHHH
Confidence 5788999999999999996 59999999999999764322111122 23456643 788999999999999999999
Q ss_pred HHHHcC-CCeEEEEeeccCCCCCCC
Q psy13271 80 QFIESG-SDCTLALGFEKMEKGSLG 103 (110)
Q Consensus 80 ~~i~sG-~~~vlv~g~e~~s~~~~~ 103 (110)
+.|++| +|.+|++|+|+||+.++.
T Consensus 101 ~~I~sG~~d~vlagG~E~ms~~~~~ 125 (385)
T TIGR02445 101 RAIMTGDADVCLVGGVEHMGHVPMM 125 (385)
T ss_pred HHHHCCCCCEEEEeeehhcccCccc
Confidence 999999 999999999999988753
No 59
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=99.68 E-value=7.6e-16 Score=108.92 Aligned_cols=96 Identities=26% Similarity=0.308 Sum_probs=85.3
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcc---hhHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTC---GQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~---~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i 82 (110)
+++++.+|+.+|++++|+++|+++++||.+++++.+++... ...++..+|+++.++++++++|+++..+|..|.++|
T Consensus 46 ~~~~~~~la~~A~~~al~~ag~~~~~Id~li~~~~~~~~~~~~~~~~l~~~lg~~~~~~~~v~~~C~s~~~al~~A~~~i 125 (320)
T cd00830 46 PGETTSDLAVEAAKKALEDAGIDADDIDLIIVATSTPDYLFPATACLVQARLGAKNAAAFDINAACSGFLYGLSTAAGLI 125 (320)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCCcHHHHHHHHhCCCCCcEeeccccchHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999887765432 345778899987899999999999999999999999
Q ss_pred HcC-CCeEEEEeeccCCCCC
Q psy13271 83 ESG-SDCTLALGFEKMEKGS 101 (110)
Q Consensus 83 ~sG-~~~vlv~g~e~~s~~~ 101 (110)
++| .+++||+++|.+++..
T Consensus 126 ~~g~~~~vLvv~~e~~s~~~ 145 (320)
T cd00830 126 RSGGAKNVLVVGAETLSRIL 145 (320)
T ss_pred HcCCCCEEEEEEehhhcccc
Confidence 999 9999999999987653
No 60
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed
Probab=99.68 E-value=6.1e-16 Score=112.76 Aligned_cols=97 Identities=21% Similarity=0.297 Sum_probs=83.3
Q ss_pred CCCCHHHHHHHHHHHHHHH-cCCCccccCeEEEEeecCCC----cchhHHHHHcCCC-CCCeeeEeccchHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDD-AGISINQVQQACCGYVYGDS----TCGQRALYQIGMT-GIPVFNVNNNCSTGSSALMLAK 79 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~-agl~~~~id~vi~~~~~~~~----~~~~~~a~~lg~~-~~~~~~i~~~C~sg~~al~~A~ 79 (110)
++.++.+|+.++++++|++ +|+++++||.+++|+..+.. ..+..++..+|+. .+|+++++++|+||+.++..|+
T Consensus 23 ~~~~~~~L~~~~~~~al~~~agl~~~~Id~vi~g~~~~~~~~g~~~ar~~~~~~Gl~~~~p~~~V~~~caSG~~Ai~~A~ 102 (387)
T PRK08947 23 RNVRAEDLSAHLMRSLLARNPALDPAEIDDIIWGCVQQTLEQGFNIARNAALLAGIPHSVPAVTVNRLCGSSMQALHDAA 102 (387)
T ss_pred CCCCHHHHHHHHHHHHHHhccCcChHHhCeEEEEeccccccccccHHHHHHHHcCCCCCCcceeeechhHHHHHHHHHHH
Confidence 4788999999999999996 79999999999999764321 1222355678886 5899999999999999999999
Q ss_pred HHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 80 QFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 80 ~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
.+|++| +|++|++|+|+||+.++
T Consensus 103 ~~I~sG~~d~vlv~G~E~ms~~~~ 126 (387)
T PRK08947 103 RAIMTGDGDVFLIGGVEHMGHVPM 126 (387)
T ss_pred HHHHCCCCCEEEEccccccccCcc
Confidence 999999 99999999999998775
No 61
>PRK06158 thiolase; Provisional
Probab=99.67 E-value=6.1e-16 Score=112.63 Aligned_cols=96 Identities=21% Similarity=0.169 Sum_probs=81.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCCCCeeeEeccchHHHHHHHHHHH
Q psy13271 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQ 80 (110)
Q Consensus 1 f~~~~~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~ 80 (110)
|+|. +++++.+|+.+|++++|+++|++++|||.+++++... ...+..+++.+|+++.+.++++.+|+++..++..|+.
T Consensus 20 ~~~~-~~~t~~eL~~eA~~~Al~dAgl~~~dID~iv~~~~~~-~~~~~~la~~lGl~~~~~~~~~~g~~s~~~al~~A~~ 97 (384)
T PRK06158 20 LGEA-PGLSAMELLAQAAHRALADAGLTMADVDGLFTASPDD-ALWGLSVAEYLGIRPRFVDGTMIGGSSFLAHLLPAAL 97 (384)
T ss_pred ceeC-CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCC-CCcHHHHHHHcCCCCeeeccccCccHHHHHHHHHHHH
Confidence 5555 6889999999999999999999999999999886432 2234568889999877888899999999999999999
Q ss_pred HHHcC-CCeEEEE-eeccCC
Q psy13271 81 FIESG-SDCTLAL-GFEKME 98 (110)
Q Consensus 81 ~i~sG-~~~vlv~-g~e~~s 98 (110)
+|++| +|+|||+ +.+.++
T Consensus 98 ~I~sG~~d~vLV~~g~~~~~ 117 (384)
T PRK06158 98 ALEAGLCDVALICYGSNQRS 117 (384)
T ss_pred HHHcCCCCEEEEeecccccc
Confidence 99999 9999987 555554
No 62
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=99.66 E-value=7.9e-16 Score=109.00 Aligned_cols=96 Identities=25% Similarity=0.310 Sum_probs=85.3
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCc---chhHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHHH
Q psy13271 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDST---CGQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIE 83 (110)
Q Consensus 7 ~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~---~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i~ 83 (110)
+++..+|+.+|++++|+++|+++++||.+++++..++.. ....++..+|++..++++++++|++++.+|..|.++|+
T Consensus 45 ~~~~~~l~~~a~~~aL~~ag~~~~~Id~li~~~~~~~~~~~~~~~~i~~~lg~~~~~~~~v~~~C~s~~~al~~A~~~i~ 124 (324)
T cd00827 45 DEDVPTMAVEAARRALERAGIDPDDIGLLIVATESPIDKGKSAATYLAELLGLTNAEAFDLKQACYGGTAALQLAANLVE 124 (324)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCccHHHHHHHHcCCCCCceeehhhhhHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999988765432 23457788999778999999999999999999999999
Q ss_pred cC-CCeEEEEeeccCCCCCC
Q psy13271 84 SG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 84 sG-~~~vlv~g~e~~s~~~~ 102 (110)
+| .+++||+++|.++..+.
T Consensus 125 ~g~~~~vlvv~~e~~~~~~~ 144 (324)
T cd00827 125 SGPWRYALVVASDIASYLLD 144 (324)
T ss_pred cCCCCEEEEEEEHHhhhccc
Confidence 99 99999999999887764
No 63
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=99.65 E-value=1.4e-15 Score=110.59 Aligned_cols=101 Identities=23% Similarity=0.312 Sum_probs=79.8
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHH----HHcCCC-CCCeeeEeccchHHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRAL----YQIGMT-GIPVFNVNNNCSTGS 72 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a----~~lg~~-~~~~~~i~~~C~sg~ 72 (110)
|+|+. ++.+..+|+.+|++++|+|+|++++|||.+++++..........++ -..|+. ..|.++++++|+|+.
T Consensus 14 f~~~~~~~~~~~~~~L~~~a~~~al~dagl~~~~ID~vv~g~~~~~~~~~~~~~~~~~l~~gl~~~~p~~~v~~acaSg~ 93 (382)
T PRK07801 14 VGKRKGGLAGVHPADLGAHVLKGLVDRTGIDPAAVDDVIFGCVDTIGPQAGNIARTSWLAAGLPEEVPGVTVDRQCGSSQ 93 (382)
T ss_pred ccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEeeccCCcccccHHHHHHHHcCCCCCCceeeecchhhhHH
Confidence 55542 2378999999999999999999999999999986521111111122 235663 468899999999999
Q ss_pred HHHHHHHHHHHcC-CCeEEEEeeccCCCCC
Q psy13271 73 SALMLAKQFIESG-SDCTLALGFEKMEKGS 101 (110)
Q Consensus 73 ~al~~A~~~i~sG-~~~vlv~g~e~~s~~~ 101 (110)
.++..|+++|++| +|++|++|+|.+++.+
T Consensus 94 ~Av~~Aa~~I~sG~~d~vLv~G~e~ms~~~ 123 (382)
T PRK07801 94 QAIHFAAQAVMSGTQDLVVAGGVQNMSQIP 123 (382)
T ss_pred HHHHHHHHHHHCCCCCEEEEcchhhhcCCc
Confidence 9999999999999 9999999999887755
No 64
>PLN03168 chalcone synthase; Provisional
Probab=99.65 E-value=1.2e-15 Score=111.26 Aligned_cols=93 Identities=24% Similarity=0.270 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch--hHHHHHcCCCCCC--eeeEeccchHHHHHHHHHHHHHHc
Q psy13271 9 DYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG--QRALYQIGMTGIP--VFNVNNNCSTGSSALMLAKQFIES 84 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~--~~~a~~lg~~~~~--~~~i~~~C~sg~~al~~A~~~i~s 84 (110)
...+|+.+|+++||+++|++++|||.||++++++...++ ..+++.||+++.. +++++.+|+++..+|..|..++++
T Consensus 100 ~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~~~~r~~d~~~gC~g~~~aL~~A~~~i~~ 179 (389)
T PLN03168 100 QVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLKPTVKRVMMYQTGCFGGASVLRVAKDLAEN 179 (389)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcCCcceeeeeeCCccHHHHHHHHHHHHHHHh
Confidence 346799999999999999999999999999988755322 3577899997643 799999999999999999999999
Q ss_pred C-CCeEEEEeeccCCCCC
Q psy13271 85 G-SDCTLALGFEKMEKGS 101 (110)
Q Consensus 85 G-~~~vlv~g~e~~s~~~ 101 (110)
| .++|||+++|.+|...
T Consensus 180 ~~~~~VLVV~~E~~S~~~ 197 (389)
T PLN03168 180 NKGARVLAVASEVTAVTY 197 (389)
T ss_pred CCCCEEEEEEEehhhhhc
Confidence 9 9999999999987643
No 65
>PLN02932 3-ketoacyl-CoA synthase
Probab=99.65 E-value=1.6e-15 Score=112.60 Aligned_cols=98 Identities=17% Similarity=0.204 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch--hHHHHHcCCC-CCCeeeEe-ccchHHHHHHHHHHHHHHcC
Q psy13271 10 YPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG--QRALYQIGMT-GIPVFNVN-NNCSTGSSALMLAKQFIESG 85 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~--~~~a~~lg~~-~~~~~~i~-~~C~sg~~al~~A~~~i~sG 85 (110)
..+++.+|++++|+++|++|+|||.+|+++++++..++ ..+.+.+|++ ++..++++ .||++++.+|..|.++++++
T Consensus 148 a~~la~~Aa~~aL~~agi~p~dId~lIv~tst~~~~Pslaa~V~~~lGlr~~i~~fdL~gmGCSggl~aL~lA~~ll~~~ 227 (478)
T PLN02932 148 TEEVIIGAVDNLFRNTGISPSDIGILVVNSSTFNPTPSLSSILVNKFKLRDNIKSLNLGGMGCSAGVIAIDAAKSLLQVH 227 (478)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCCcHHHHHHHHhCCCCCceEEEeccchhhhHHHHHHHHHHHHHcC
Confidence 56799999999999999999999999999988764332 4577899996 78899998 89999999999999999999
Q ss_pred -CCeEEEEeeccCCCCCCCCCCC
Q psy13271 86 -SDCTLALGFEKMEKGSLGAKSK 107 (110)
Q Consensus 86 -~~~vlv~g~e~~s~~~~~~~~~ 107 (110)
..++||+++|.+|......+++
T Consensus 228 ~~~~aLVVstE~~S~~~~~~d~r 250 (478)
T PLN02932 228 RNTYALVVSTENITQNLYLGNNK 250 (478)
T ss_pred CCCeEEEEEEeecccccCCCcch
Confidence 9999999999999887665543
No 66
>PRK04262 hypothetical protein; Provisional
Probab=99.65 E-value=1.2e-15 Score=109.71 Aligned_cols=92 Identities=25% Similarity=0.335 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch---hHHHHHcCCCC-CCeeeEeccchHHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG---QRALYQIGMTG-IPVFNVNNNCSTGSSALMLAKQF 81 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~---~~~a~~lg~~~-~~~~~i~~~C~sg~~al~~A~~~ 81 (110)
++++..+|+.+|++++|+++|++++|||.+++++.++++..+ ..+++.+|+++ .++++++++|+++..+|..|..+
T Consensus 47 ~~~~~~~la~~Aa~~aL~~ag~~~~dId~li~~s~~~~~~~p~~a~~v~~~Lgl~~~~~~~dv~~~C~~~~~aL~~A~~~ 126 (347)
T PRK04262 47 PDEDTATIAVEAARNALKRAGIDPKEIGAVYVGSESHPYAVKPTATIVAEALGATPDLTAADLEFACKAGTAALQAAMGL 126 (347)
T ss_pred CCcCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCcccccHHHHHHHHcCCCCCceEEEHHHhHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999998877664322 34678899974 68899999999999999999999
Q ss_pred HHcC-CCeEEEEeeccC
Q psy13271 82 IESG-SDCTLALGFEKM 97 (110)
Q Consensus 82 i~sG-~~~vlv~g~e~~ 97 (110)
|++| ++++||+++|..
T Consensus 127 i~sg~~~~aLVv~~e~~ 143 (347)
T PRK04262 127 VKSGMIKYALAIGADTA 143 (347)
T ss_pred HHcCCCCEEEEEEEeee
Confidence 9999 999999999973
No 67
>PRK12404 stage V sporulation protein AD; Provisional
Probab=99.65 E-value=1.3e-15 Score=107.59 Aligned_cols=89 Identities=22% Similarity=0.285 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHHHcC-
Q psy13271 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIESG- 85 (110)
Q Consensus 7 ~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i~sG- 85 (110)
+....+|+.+|+++||+++|++++|||.++.++...+...+..+++.||+ |.+.+.++|+++..+|..|+.+|++|
T Consensus 51 EkAE~~L~~EA~~~AL~kAGI~~~DID~i~vGdL~nQ~ipssfvar~LGI---P~~gV~gACSTg~eAL~lAa~~VaSG~ 127 (334)
T PRK12404 51 EKAERKLLEEACSRAIEKAKLRKEDIQFFLAGDLMNQITPTSFAARTLGI---PYLGLFGACSTSMEGLALAALIVNSGG 127 (334)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCcCcHHHHHHHhCC---CccceeecCHHHHHHHHHHHHHHHcCC
Confidence 45666899999999999999999999999999887555556678888984 67999999999999999999999999
Q ss_pred CCeEEEEeeccCC
Q psy13271 86 SDCTLALGFEKME 98 (110)
Q Consensus 86 ~~~vlv~g~e~~s 98 (110)
+|+||++.+..+.
T Consensus 128 Ad~VLavtsSH~~ 140 (334)
T PRK12404 128 AKYVLTGASSHNA 140 (334)
T ss_pred CCEEEEEeCcccc
Confidence 9999999865544
No 68
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=99.64 E-value=2.9e-15 Score=102.67 Aligned_cols=89 Identities=35% Similarity=0.518 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcc---hhHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHHHc
Q psy13271 8 TDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTC---GQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIES 84 (110)
Q Consensus 8 ~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~---~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i~s 84 (110)
.+..+|+.+|++++|+++|++++|||.+++++..++... ...++..+|++..+.++++++|+++..+|+.|.++|++
T Consensus 5 ~~~~~l~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~~~~~~~~i~~~C~s~~~al~~A~~~i~~ 84 (254)
T cd00327 5 ITASELGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGISGGPAYSVNQACATGLTALALAVQQVQN 84 (254)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCCCCCCcceeccHhHHHHHHHHHHHHHHHC
Confidence 347899999999999999999999999999998776532 34678889996569999999999999999999999999
Q ss_pred C-CCeEEEEeecc
Q psy13271 85 G-SDCTLALGFEK 96 (110)
Q Consensus 85 G-~~~vlv~g~e~ 96 (110)
| ++++||+++|.
T Consensus 85 g~~~~~lv~~~e~ 97 (254)
T cd00327 85 GKADIVLAGGSEE 97 (254)
T ss_pred CCCCEEEEEecce
Confidence 9 99999999986
No 69
>PRK06690 acetyl-CoA acetyltransferase; Provisional
Probab=99.64 E-value=3e-15 Score=108.27 Aligned_cols=99 Identities=23% Similarity=0.399 Sum_probs=83.6
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchh-HHHHHcCCC-CCCeeeEeccchHHHHHH
Q psy13271 1 FQKPK---EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQ-RALYQIGMT-GIPVFNVNNNCSTGSSAL 75 (110)
Q Consensus 1 f~~~~---~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~-~~a~~lg~~-~~~~~~i~~~C~sg~~al 75 (110)
||++. ++.++.+|+..+++++++ |++ ++||.+++|+..+...... .++..+|+. ++|+++++++|+||..++
T Consensus 13 fg~~~g~~~~~~~~~L~~~a~~~~~~--gi~-~~Id~vi~G~~~~~~~~~~r~~~~~~Gl~~~~p~~tV~~~CaSG~~Ai 89 (361)
T PRK06690 13 IGKKNGMLKDYEVQQLAAPLLTFLSK--GME-REIDDVILGNVVGPGGNVARLSALEAGLGLHIPGVTIDRQCGAGLEAI 89 (361)
T ss_pred ccCCCCccCCCCHHHHHHHHHHHHHc--cch-hhcCEEEEEecCCCcchHHHHHHHHcCCCCCCCceehhhhhhHHHHHH
Confidence 55543 457889999999999855 896 8999999998765433333 356788997 799999999999999999
Q ss_pred HHHHHHHHcC-CCeEEEEeeccCCCCCC
Q psy13271 76 MLAKQFIESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 76 ~~A~~~i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
..|++.|++| +|.+|++|+|.||+.|+
T Consensus 90 ~~a~~~I~sG~~d~~l~gG~E~ms~~p~ 117 (361)
T PRK06690 90 RTACHFIQGGAGKCYIAGGVESTSTSPF 117 (361)
T ss_pred HHHHHHHHCCCCCEEEEeccccccCCCc
Confidence 9999999999 99999999999998875
No 70
>PRK06840 hypothetical protein; Validated
Probab=99.63 E-value=5e-15 Score=105.94 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=82.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEee-cCCCcc---hhHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYV-YGDSTC---GQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQF 81 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~-~~~~~~---~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~ 81 (110)
++++..+|+.+|++++|+++|+++++||.++++++ .+++.. ...+++.+|+++.++++++++|+++..+|..|.++
T Consensus 49 ~~~~~~~la~~Aa~~aL~~ag~~~~dId~li~~~~~~~~~~~p~~a~~l~~~lGl~~~~~~~v~~~C~~~~~al~~A~~~ 128 (339)
T PRK06840 49 PEDHTSDMAIAAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIGAKNAWAFDIMAVCASFPIALKVAKDL 128 (339)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCCCCchHHHHHHHhCCCCcccccccccchHHHHHHHHHHHH
Confidence 46889999999999999999999999999987643 444432 34678899998788999999999999999999999
Q ss_pred HHc-C-CCeEEEEeeccCCCC
Q psy13271 82 IES-G-SDCTLALGFEKMEKG 100 (110)
Q Consensus 82 i~s-G-~~~vlv~g~e~~s~~ 100 (110)
|++ | ++++||+++|..++.
T Consensus 129 l~~~g~~~~~Lvv~~~~~s~~ 149 (339)
T PRK06840 129 LYSDPSIENVLLVGGYRNSDL 149 (339)
T ss_pred HhcCCCccEEEEEeecccccc
Confidence 999 8 999999999987763
No 71
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=99.62 E-value=5.6e-15 Score=107.02 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch---hHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHHHcC
Q psy13271 9 DYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG---QRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIESG 85 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~---~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i~sG 85 (110)
+..+|+.+|++++|+++|+++++||.+++++..++...+ ..++..+|++ .++++++.+|++++.+|..|.++|++|
T Consensus 94 ~~~~la~~Aa~~aL~~agl~~~~Id~li~~~~~~~~~~p~~a~~v~~~Lgl~-~~~~~v~~aCasg~~al~~A~~~i~~g 172 (372)
T PRK07515 94 IQAEMGVAAARQALARAGRTAEDIDAVIVACSNMQRAYPAMAIEIQQALGIE-GFAFDMNVACSSATFGIQTAANAIRSG 172 (372)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhcCCC-CcEEEecchhHHHHHHHHHHHHHHHcC
Confidence 346899999999999999999999999998876554433 3467889997 489999999999999999999999999
Q ss_pred -CCeEEEEeeccCCCC
Q psy13271 86 -SDCTLALGFEKMEKG 100 (110)
Q Consensus 86 -~~~vlv~g~e~~s~~ 100 (110)
++++||+++|.++..
T Consensus 173 ~~~~vLvv~~e~~s~~ 188 (372)
T PRK07515 173 SARRVLVVNPEICSGH 188 (372)
T ss_pred CCCEEEEEeeeccccc
Confidence 999999999998754
No 72
>PRK08142 acetyl-CoA acetyltransferase; Provisional
Probab=99.61 E-value=6.1e-15 Score=107.54 Aligned_cols=97 Identities=21% Similarity=0.142 Sum_probs=81.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCCCCeeeEeccchHHHHHHHHHHH
Q psy13271 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQ 80 (110)
Q Consensus 1 f~~~~~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~ 80 (110)
|+|+ ++.++.+|+.+|+++||+|+||+++|||+++..+..+. ..+..+++.+|+++.+...++++|+++..++..|+.
T Consensus 17 ~~~~-~~~~~~~L~~eA~~~Al~DAgl~~~dID~~~~~~~~~~-~~~~~~~~~lGl~~~~~~~v~~gg~s~~~a~~~A~~ 94 (388)
T PRK08142 17 TRKA-PDKSVAQLHAEVAKGALADAGLSLADVDGYFCAGDAPG-LGPASMVDYLGLKLRHVDSTETGGSSYLAHVGHAAQ 94 (388)
T ss_pred ceeC-CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCCC-ccHHHHHHhCCCCCeeeccccCCcHHHHHHHHHHHH
Confidence 6665 68899999999999999999999999999775321111 112357889999877888899999999999999999
Q ss_pred HHHcC-CCeEEEEeeccCCC
Q psy13271 81 FIESG-SDCTLALGFEKMEK 99 (110)
Q Consensus 81 ~i~sG-~~~vlv~g~e~~s~ 99 (110)
.|++| +|+|||+++|+++.
T Consensus 95 ~I~sG~~d~vLvvg~e~~~~ 114 (388)
T PRK08142 95 AIAAGKCSVALITLAGRPRS 114 (388)
T ss_pred HHHcCCCCEEEEEeeeeccc
Confidence 99999 99999999998653
No 73
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=99.61 E-value=3.4e-15 Score=107.67 Aligned_cols=91 Identities=27% Similarity=0.409 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcc--hhHHHHHcCCC-CCCeeeEe-ccchHHHHHHHHHHHHHHc
Q psy13271 9 DYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTC--GQRALYQIGMT-GIPVFNVN-NNCSTGSSALMLAKQFIES 84 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~--~~~~a~~lg~~-~~~~~~i~-~~C~sg~~al~~A~~~i~s 84 (110)
+..+|+.+|++++|+++|+++++||.+|++++++...+ ...+++.+|++ ++++++++ ++|++++.+|.+|..++++
T Consensus 84 ~~~~la~~Aa~~aL~~a~~~~~~Id~li~~s~~~~~~P~~a~~i~~~lgl~~~~~~~dv~~~~C~~~~~al~~A~~~~~~ 163 (361)
T cd00831 84 EARELAEEAARGALDEAGLRPSDIDHLVVNTSTGNPTPSLDAMLINRLGLRPDVKRYNLGGMGCSAGAIALDLAKDLLEA 163 (361)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCCcccchhccccccchhHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999887653322 24678899997 48899998 8999999999999999999
Q ss_pred C-CCeEEEEeeccCCC
Q psy13271 85 G-SDCTLALGFEKMEK 99 (110)
Q Consensus 85 G-~~~vlv~g~e~~s~ 99 (110)
| .+++||+++|..+.
T Consensus 164 ~~~~~aLvv~~e~~s~ 179 (361)
T cd00831 164 NPGARVLVVSTELCSL 179 (361)
T ss_pred CCCCEEEEEEeecccc
Confidence 9 99999999999876
No 74
>PLN02377 3-ketoacyl-CoA synthase
Probab=99.61 E-value=9.5e-15 Score=109.11 Aligned_cols=98 Identities=14% Similarity=0.170 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch---hHHHHHcCCC-CCCeeeEe-ccchHHHHHHHHHHHHHH
Q psy13271 9 DYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG---QRALYQIGMT-GIPVFNVN-NNCSTGSSALMLAKQFIE 83 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~---~~~a~~lg~~-~~~~~~i~-~~C~sg~~al~~A~~~i~ 83 (110)
...+++..|++++|+++|++|+|||.+|+ ++++.+..| ..+++.+|++ ++.+++++ .||++++.+|..|.++++
T Consensus 171 ea~~l~~~A~~~aL~kaGi~p~dID~LVv-~cS~~~~~PSlaa~V~~~LGlr~~v~afdL~gmGCsggl~aL~lA~~ll~ 249 (502)
T PLN02377 171 EAEQVMFGALDNLFANTNVNPKDIGILVV-NCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQ 249 (502)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEE-ECCCCCCCCcHHHHHHHHhCCCCCCeEEecccchhhHHHHHHHHHHHHHH
Confidence 35568999999999999999999999987 566654333 4677899997 78899999 799999999999999999
Q ss_pred cC-CCeEEEEeeccCCCCCCCCCCC
Q psy13271 84 SG-SDCTLALGFEKMEKGSLGAKSK 107 (110)
Q Consensus 84 sG-~~~vlv~g~e~~s~~~~~~~~~ 107 (110)
++ ..++||+++|.+|......+++
T Consensus 250 ~~~~~~aLVVstE~~S~~~~~~d~~ 274 (502)
T PLN02377 250 VHRNTYAVVVSTENITQNWYFGNKK 274 (502)
T ss_pred cCCCCEEEEEEEeccccccCCCCCc
Confidence 99 9999999999998776555443
No 75
>PLN02577 hydroxymethylglutaryl-CoA synthase
Probab=99.60 E-value=7e-15 Score=108.92 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=83.7
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchh---HH---HHHcCCCCCCeeeEeccchHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQ---RA---LYQIGMTGIPVFNVNNNCSTGSSALMLAK 79 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~---~~---a~~lg~~~~~~~~i~~~C~sg~~al~~A~ 79 (110)
++++..+|+++|++++|+++|+++++||.|++++.+++...+. .+ ...||.+++.+++++.+|.+++.||..|.
T Consensus 49 ~~Ed~~tmA~~AA~~aL~~agid~~~IdllivaTeT~~d~~ps~A~~v~~ll~~LG~~~~~afDi~~AC~G~~~AL~~A~ 128 (459)
T PLN02577 49 DVEDVISMSLTVVKSLLEKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEESGNTDIEGVDSTNACYGGTAALLNCV 128 (459)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCCchHHHHHHHHHHhCCCCcEEeehhhhhHHHHHHHHHHH
Confidence 5789999999999999999999999999999999888654432 23 35678888899999999999999999999
Q ss_pred HHHHcC-C--CeEEEEeeccCCCCC
Q psy13271 80 QFIESG-S--DCTLALGFEKMEKGS 101 (110)
Q Consensus 80 ~~i~sG-~--~~vlv~g~e~~s~~~ 101 (110)
++|++| . +++||+++|..+..+
T Consensus 129 ~~i~sg~~~~~~aLVV~aD~a~~~~ 153 (459)
T PLN02577 129 NWVESSSWDGRYGLVVAADSAVYAE 153 (459)
T ss_pred HHHHcCCCCCCeEEEEEechhhccC
Confidence 999999 7 999999999966443
No 76
>PLN03171 chalcone synthase-like protein; Provisional
Probab=99.60 E-value=8.4e-15 Score=107.18 Aligned_cols=94 Identities=26% Similarity=0.242 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch--hHHHHHcCCCCCC--eeeEeccchHHHHHHHHHHHHHH
Q psy13271 8 TDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG--QRALYQIGMTGIP--VFNVNNNCSTGSSALMLAKQFIE 83 (110)
Q Consensus 8 ~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~--~~~a~~lg~~~~~--~~~i~~~C~sg~~al~~A~~~i~ 83 (110)
++..+|+.+|++++|+++|++++|||.||++++++++.++ ..+++.||++... .+.+.++|+++..+|..|.++|+
T Consensus 106 ~~a~~la~~Aa~~aL~~ag~~~~dId~li~~t~t~~~~P~~a~~v~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~li~ 185 (399)
T PLN03171 106 DAVPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAHIPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGAAALRLAKDLAE 185 (399)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCchHHHHHHHhCCCcccceeeccCCccHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999998876432 2467889997532 56677899999999999999999
Q ss_pred cC-CCeEEEEeeccCCCCC
Q psy13271 84 SG-SDCTLALGFEKMEKGS 101 (110)
Q Consensus 84 sG-~~~vlv~g~e~~s~~~ 101 (110)
+| .++|||+++|..|...
T Consensus 186 ~~~~~~vLVv~~e~~s~~~ 204 (399)
T PLN03171 186 NNRGARVLVVAAEITLLLF 204 (399)
T ss_pred hCCCCeEEEEEEecccccc
Confidence 99 9999999999987664
No 77
>PLN03169 chalcone synthase family protein; Provisional
Probab=99.58 E-value=8.5e-15 Score=106.90 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch---hHHHHHcCCCCC--CeeeEeccchHHHHHHHHHHHH
Q psy13271 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG---QRALYQIGMTGI--PVFNVNNNCSTGSSALMLAKQF 81 (110)
Q Consensus 7 ~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~---~~~a~~lg~~~~--~~~~i~~~C~sg~~al~~A~~~ 81 (110)
+++..+|+.+|++++|+++|++++|||.||+++++ ++..| ..+++.||+++. .+++++.+|+++..+|.+|..+
T Consensus 103 ~e~~~~La~~Aa~~aL~~ag~~~~dId~lI~~t~t-~~~~P~~a~~l~~~LGl~~~~~~~~d~~~gC~g~~~aL~~A~~~ 181 (391)
T PLN03169 103 NEAVTQMAVEASLACIKEWGRPVSDITHLVYVSSS-EARLPGGDLYLAKQLGLSPDVQRVMLYFLGCSGGVAGLRVAKDI 181 (391)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHCCEEEEECcC-CCCCCcHHHHHHHHhCcCCcceeeecccChhHHHHHHHHHHHHH
Confidence 34667899999999999999999999999998874 54444 357889999753 3689999999999999999999
Q ss_pred HHcC-CCeEEEEeeccCCC
Q psy13271 82 IESG-SDCTLALGFEKMEK 99 (110)
Q Consensus 82 i~sG-~~~vlv~g~e~~s~ 99 (110)
+++| .++|||+++|..+.
T Consensus 182 ~~~~~~~~vLvv~~e~~s~ 200 (391)
T PLN03169 182 AENNPGSRVLLTTSETTIL 200 (391)
T ss_pred HHhCCCCeEEEEEEEcChh
Confidence 9999 99999999999654
No 78
>PLN03170 chalcone synthase; Provisional
Probab=99.58 E-value=1.1e-14 Score=106.65 Aligned_cols=92 Identities=20% Similarity=0.232 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch--hHHHHHcCCCCCC--eeeEeccchHHHHHHHHHHHHHHcC
Q psy13271 10 YPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG--QRALYQIGMTGIP--VFNVNNNCSTGSSALMLAKQFIESG 85 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~--~~~a~~lg~~~~~--~~~i~~~C~sg~~al~~A~~~i~sG 85 (110)
..+|+.+|+++||+++|++++|||.||++++++...++ ..+++.||+++.. +++++.+|+++..+|..|.++++++
T Consensus 106 a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~~~~r~~d~~~gC~G~~~aL~~A~~l~~~~ 185 (401)
T PLN03170 106 VPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENN 185 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcCcccHHHHhhcChhHHHHHHHHHHHHHHHcC
Confidence 34699999999999999999999999998887633322 4678899997643 7899999999999999999999999
Q ss_pred -CCeEEEEeeccCCCCC
Q psy13271 86 -SDCTLALGFEKMEKGS 101 (110)
Q Consensus 86 -~~~vlv~g~e~~s~~~ 101 (110)
.++|||+++|..|...
T Consensus 186 ~~~~vLVV~~E~~S~~~ 202 (401)
T PLN03170 186 RGARVLVVCSEITAVTF 202 (401)
T ss_pred CCCeEEEEEEehhhhcc
Confidence 9999999999987544
No 79
>PLN03172 chalcone synthase family protein; Provisional
Probab=99.56 E-value=4.4e-14 Score=103.21 Aligned_cols=90 Identities=22% Similarity=0.277 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch--hHHHHHcCCCCC-C-eeeEeccchHHHHHHHHHHHHHHcC
Q psy13271 10 YPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG--QRALYQIGMTGI-P-VFNVNNNCSTGSSALMLAKQFIESG 85 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~--~~~a~~lg~~~~-~-~~~i~~~C~sg~~al~~A~~~i~sG 85 (110)
..+|+.+|+++||+++|++++|||.||++++++...++ ..+++.||+++. . .+.++.+|+++..+|..|.++++++
T Consensus 102 a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~ 181 (393)
T PLN03172 102 VPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKPSVKRFMMYQQGCFAGGTVLRLAKDLAENN 181 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCCCCceEEeeeCCchHHHHHHHHHHHHHHHcC
Confidence 34799999999999999999999999998887644332 357789999753 2 4678999999999999999999999
Q ss_pred -CCeEEEEeeccCCC
Q psy13271 86 -SDCTLALGFEKMEK 99 (110)
Q Consensus 86 -~~~vlv~g~e~~s~ 99 (110)
.++|||+++|..|.
T Consensus 182 ~~~~vLVV~~E~~S~ 196 (393)
T PLN03172 182 AGSRVLVVCSEITAV 196 (393)
T ss_pred CCCeEEEEEEehhhh
Confidence 99999999999884
No 80
>PLN03173 chalcone synthase; Provisional
Probab=99.56 E-value=4.2e-14 Score=103.29 Aligned_cols=90 Identities=22% Similarity=0.279 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch--hHHHHHcCCCCC--CeeeEeccchHHHHHHHHHHHHHHcC
Q psy13271 10 YPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG--QRALYQIGMTGI--PVFNVNNNCSTGSSALMLAKQFIESG 85 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~--~~~a~~lg~~~~--~~~~i~~~C~sg~~al~~A~~~i~sG 85 (110)
..+|+.+|+++||+++|++++|||.||++++++...++ ..+++.||+++. ..+.++.+|+++..+|..|.++++++
T Consensus 102 a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~ 181 (391)
T PLN03173 102 VPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRSSVKRFMMYQQGCFAGGTVLRLAKDLAENN 181 (391)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCCccceeeehhcCccHHHHHHHHHHHHHHHhC
Confidence 34799999999999999999999999998887644332 357789999753 35678999999999999999999999
Q ss_pred -CCeEEEEeeccCCC
Q psy13271 86 -SDCTLALGFEKMEK 99 (110)
Q Consensus 86 -~~~vlv~g~e~~s~ 99 (110)
.++|||+++|.+|.
T Consensus 182 ~~~~vLVV~~E~~S~ 196 (391)
T PLN03173 182 KGARVLVVCSEITAV 196 (391)
T ss_pred CCCeEEEEEEehhhh
Confidence 99999999999884
No 81
>PRK07855 lipid-transfer protein; Provisional
Probab=99.55 E-value=7.1e-14 Score=101.93 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=77.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCC-CCeeeEeccchHHHHHHHHHH
Q psy13271 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTG-IPVFNVNNNCSTGSSALMLAK 79 (110)
Q Consensus 1 f~~~~~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~-~~~~~i~~~C~sg~~al~~A~ 79 (110)
|+|+ ++.++.+|+.+|+++||+|+||+++|||.+++.+. .......+++.+|+.+ .+...++++|+++..++..|+
T Consensus 16 ~~r~-~~~~~~~L~~eA~~~Al~DAgl~~~dID~~~~~~~--~~~~~~~l~~~lGl~~~~~~~~v~~gg~sg~~~~~~A~ 92 (386)
T PRK07855 16 FSKN-SGRSELRLACEAVLAALDDAGLAPSDVDGLVTFTM--DTNPEIAVARALGIGELKFFSRIHYGGGAACATVQQAA 92 (386)
T ss_pred cccC-CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC--ccccHHHHHHHCCCCCCcceeeecCCcHHHHHHHHHHH
Confidence 5665 57899999999999999999999999999987432 1222345778899976 566789999999999999999
Q ss_pred HHHHcC-CCeEEEEee
Q psy13271 80 QFIESG-SDCTLALGF 94 (110)
Q Consensus 80 ~~i~sG-~~~vlv~g~ 94 (110)
..|++| +|+|||++.
T Consensus 93 ~~I~sG~~d~vLv~g~ 108 (386)
T PRK07855 93 MAVATGVADVVVCYRA 108 (386)
T ss_pred HHHHCCCCCEEEEEee
Confidence 999999 999999998
No 82
>PLN02192 3-ketoacyl-CoA synthase
Probab=99.55 E-value=6.2e-14 Score=104.82 Aligned_cols=96 Identities=13% Similarity=0.154 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch---hHHHHHcCCC-CCCeeeEe-ccchHHHHHHHHHHHHHHc
Q psy13271 10 YPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG---QRALYQIGMT-GIPVFNVN-NNCSTGSSALMLAKQFIES 84 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~---~~~a~~lg~~-~~~~~~i~-~~C~sg~~al~~A~~~i~s 84 (110)
...+...|++++|+++|++|+|||.+|++++ ++...| ..+.+.+|++ ++.+++++ .||++++.+|..|.+++++
T Consensus 176 a~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S-~~~~~PSlaa~I~n~lGlr~~i~afdLsgmGCSggl~aLdlA~~lL~a 254 (511)
T PLN02192 176 AETVMFGAIDQLLAKTSVKPKDIGILIVNCS-LFNPTPSLSAMVINHYKLRGNILSYNLGGMGCSAGLISIDLAKHLLQV 254 (511)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEECC-CCCCCchHHHHHHHHhCCCCCceEEEcccchhhhHHHHHHHHHHHHHc
Confidence 3458899999999999999999999988754 443333 3577889997 78999998 7999999999999999999
Q ss_pred C-CCeEEEEeeccCCCCCCCCCC
Q psy13271 85 G-SDCTLALGFEKMEKGSLGAKS 106 (110)
Q Consensus 85 G-~~~vlv~g~e~~s~~~~~~~~ 106 (110)
+ ..++||+++|.+|...+..++
T Consensus 255 ~~~~~aLVVstE~~S~n~y~g~d 277 (511)
T PLN02192 255 HPNSYALVISMENITLNWYFGND 277 (511)
T ss_pred CCCCeEEEEEEEeccccCCCCCC
Confidence 9 999999999998844333333
No 83
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=99.55 E-value=5.3e-14 Score=99.81 Aligned_cols=90 Identities=28% Similarity=0.378 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHcCCC----ccccCeEEEEeecCCCc---------------------c---hhHHHHHcCCCCCCe
Q psy13271 10 YPELAKEALIKALDDAGIS----INQVQQACCGYVYGDST---------------------C---GQRALYQIGMTGIPV 61 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~----~~~id~vi~~~~~~~~~---------------------~---~~~~a~~lg~~~~~~ 61 (110)
..+|+.+|++++|+++|++ +++||+|++++..+.+. . +..++..+|++ .++
T Consensus 11 ~~~l~~~aa~~aL~~Ag~~~~~~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~-g~~ 89 (332)
T cd00825 11 VSILGFEAAERAIADAGLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKAMFPGASGQIATPLGIH-GPA 89 (332)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCEEEEEEeCCccHHHHhhhhccccccCcchhhcccchHHHHHHHHHhCCC-CCc
Confidence 5789999999999999999 89999999988765432 1 24577889995 489
Q ss_pred eeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeeccCCCC
Q psy13271 62 FNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKMEKG 100 (110)
Q Consensus 62 ~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~s~~ 100 (110)
++++.+|++++.+|+.|.++|++| ++++||+++|.++..
T Consensus 90 ~~v~~~cas~~~al~~A~~~i~~g~~~~~Lv~~~d~~~~~ 129 (332)
T cd00825 90 YDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAP 129 (332)
T ss_pred cccccHhHHHHHHHHHHHHHHHcCCCCEEEEeccccccCH
Confidence 999999999999999999999999 999999999987543
No 84
>KOG1406|consensus
Probab=99.53 E-value=2.1e-14 Score=99.25 Aligned_cols=97 Identities=75% Similarity=1.229 Sum_probs=90.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHHHcC
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIESG 85 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i~sG 85 (110)
.+.+..+|+.+|...+|+|+++.-++|+.-++|-.+++...+++....+|++++|.+.+++.|++|..+|-.|.+.|++|
T Consensus 25 ~~~dypd~a~ea~tkal~da~ikys~vqqa~vgyvfgdstcgqraiyevgmtgipi~nvnnncatgssalflakqiiesg 104 (408)
T KOG1406|consen 25 ADWDYPDFAKEAITKALQDAGIKYSEVQQAVVGYVFGDSTCGQRAIYEVGMTGIPIYNVNNNCATGSSALFLAKQIIESG 104 (408)
T ss_pred cCCCCchHHHHHHHHHHHhcCCCHHHHHhhhheeeecCCccchHHHHhccccCcceeeccCccccCchHHHHHHHHHhcC
Confidence 57788999999999999999999999998888888888888888888999999999999999999999999999999999
Q ss_pred -CCeEEEEeeccCCCCCC
Q psy13271 86 -SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 86 -~~~vlv~g~e~~s~~~~ 102 (110)
.|+||+.|.|+|++...
T Consensus 105 n~dcvlalgfekm~~gsl 122 (408)
T KOG1406|consen 105 NSDCVLALGFEKMERGSL 122 (408)
T ss_pred CcceEEeechhhhCCccc
Confidence 99999999999987654
No 85
>TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade. This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.
Probab=99.53 E-value=1.3e-13 Score=100.27 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=79.9
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcc---hhHHHHHcCCC-CCCeeeEeccchHHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTC---GQRALYQIGMT-GIPVFNVNNNCSTGSSALMLAKQF 81 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~---~~~~a~~lg~~-~~~~~~i~~~C~sg~~al~~A~~~ 81 (110)
++++..+|+.+|++++|+++ ++++||.+++++.++.... ...+++.||+. .++++++.++|++++.||..|.++
T Consensus 45 ~~ed~~~la~~Aa~~aL~~a--~~~~Id~li~~t~s~~~~~~s~a~~v~~~Lgl~~~~~~~dv~~aC~gg~~aL~~A~~~ 122 (379)
T TIGR01835 45 IDEDIVTMAASAAKPILDRN--DKQKIDMVIFGTESGIDQSKAAAVYVHGLLGLQPFCRSFELKQACYGATAALQMAKGH 122 (379)
T ss_pred CCCCHHHHHHHHHHHHHHhC--CHhhCCEEEEEeCCCCCCCCCHHHHHHHHhCCCCCceEEEeccccHHHHHHHHHHHHH
Confidence 56788999999999999998 8999999999988776532 24577889996 478999999999999999999999
Q ss_pred HHcC-CCeEEEEeeccC
Q psy13271 82 IESG-SDCTLALGFEKM 97 (110)
Q Consensus 82 i~sG-~~~vlv~g~e~~ 97 (110)
|++| .+++||+++|..
T Consensus 123 i~s~~~~~aLVv~~D~a 139 (379)
T TIGR01835 123 VALSPDRKVLVIASDIA 139 (379)
T ss_pred HHcCCCCeEEEEEeehh
Confidence 9999 999999999974
No 86
>PRK06066 acetyl-CoA acetyltransferase; Provisional
Probab=99.52 E-value=2.5e-13 Score=99.06 Aligned_cols=96 Identities=24% Similarity=0.250 Sum_probs=76.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcC-CCc-cccCeEEEEeec-CC-C-cchhHHHHHcCCCCCCeeeEeccchHHHHHH
Q psy13271 1 FQKPKEDTDYPELAKEALIKALDDAG-ISI-NQVQQACCGYVY-GD-S-TCGQRALYQIGMTGIPVFNVNNNCSTGSSAL 75 (110)
Q Consensus 1 f~~~~~~~~~~~l~~~a~~~al~~ag-l~~-~~id~vi~~~~~-~~-~-~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al 75 (110)
|++..++.+..+|+.+|+++||+|+| +++ +|||++++++.. .+ . .....+++.+|+.+.|.+.+ |+++..++
T Consensus 16 ~~~~~~~~s~~eL~~eA~~~Al~DAG~l~~~~dId~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~v---~~sg~~a~ 92 (385)
T PRK06066 16 FRPTTPEVSFREMMFEAASRAYKDAGNINPRRDVDSFISCQEDFWEGIAIADEFAPDQIGGAMRPTMTV---AGDGLQGL 92 (385)
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHhcCCCCChhcCCEEEEecCcccCcccccchhHHHHcccCCCCeEEE---eCcHHHHH
Confidence 56533578999999999999999999 997 799999875421 11 1 11234567899866677776 88999999
Q ss_pred HHHHHHHHcC-CCeEEEEeeccCCC
Q psy13271 76 MLAKQFIESG-SDCTLALGFEKMEK 99 (110)
Q Consensus 76 ~~A~~~i~sG-~~~vlv~g~e~~s~ 99 (110)
..|+..|++| +|+|||++.|++++
T Consensus 93 ~~A~~aV~sG~~d~vLv~g~~~~~~ 117 (385)
T PRK06066 93 AHAVMHINSGLANVVVVEAHSKPSD 117 (385)
T ss_pred HHHHHHHHcCCCCEEEEEEEeeccC
Confidence 9999999999 99999999998765
No 87
>TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade. Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes.
Probab=99.52 E-value=1.6e-13 Score=101.62 Aligned_cols=91 Identities=21% Similarity=0.231 Sum_probs=80.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchh---HHHH---HcCCCCCCeeeEeccchHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQ---RALY---QIGMTGIPVFNVNNNCSTGSSALMLAK 79 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~---~~a~---~lg~~~~~~~~i~~~C~sg~~al~~A~ 79 (110)
++++..+|+.+|++++|+++++++++||.|++++.+++...+. .++. .+|.+++.++++.++|.+++.||..|.
T Consensus 46 ~~Ed~~tma~~AA~~lL~~a~id~~~Id~Liv~TeS~~d~sps~a~~v~~lL~~lG~~~~~~fDi~~AC~G~t~AL~~A~ 125 (454)
T TIGR01833 46 DREDINSLCLTVVSKLMERYNIDYNQIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGTAALFNAI 125 (454)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCchHHHHHHHHHhcCCCCceEEeccccchhHHHHHHHHH
Confidence 5789999999999999999999999999999999887765442 3444 456777889999999999999999999
Q ss_pred HHHHcC-C--CeEEEEeecc
Q psy13271 80 QFIESG-S--DCTLALGFEK 96 (110)
Q Consensus 80 ~~i~sG-~--~~vlv~g~e~ 96 (110)
++|++| . +++||+++|.
T Consensus 126 ~~i~s~~~~~~~aLVV~sDi 145 (454)
T TIGR01833 126 NWIESSSWDGRYALVVAGDI 145 (454)
T ss_pred HHHHcCCcCCCeEEEEEecc
Confidence 999999 6 9999999998
No 88
>COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism]
Probab=99.51 E-value=1.1e-13 Score=101.19 Aligned_cols=102 Identities=39% Similarity=0.555 Sum_probs=77.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcC-------CCccccCeEEEEeecCCCc----chhHHHHHcCCCC-CCeeeEeccc
Q psy13271 1 FQKPKEDTDYPELAKEALIKALDDAG-------ISINQVQQACCGYVYGDST----CGQRALYQIGMTG-IPVFNVNNNC 68 (110)
Q Consensus 1 f~~~~~~~~~~~l~~~a~~~al~~ag-------l~~~~id~vi~~~~~~~~~----~~~~~a~~lg~~~-~~~~~i~~~C 68 (110)
||++. +.+..++..++..+++.+++ +++.+||.++.|+..+... .+..++..+|+.. +|.++++.+|
T Consensus 14 ~g~~~-~~s~~~l~~e~l~~a~~~a~~~~~~~~vd~~~v~~~~~G~~~~~g~~~~~~ar~~a~~aGl~~~~p~~~V~~~c 92 (392)
T COG0183 14 FGKFG-DGSLAELAAEALGAALIDAGLERAPADVDAADVDDVILGCVLQAGEQGQNIARQAALAAGLPGSVPAVTVNRAC 92 (392)
T ss_pred cccCC-CCchhhcCHHHHHHHHHHHHhhhccccCCHHHhhhheeccccccccccccHHHHHHHHcCCCCCCCceEEeccc
Confidence 56663 45555666555555555555 4555677888886654432 2235667889974 8999999999
Q ss_pred hHHHHHHHHHHHHHHcC-CCeEEEEeeccCCCCCCC
Q psy13271 69 STGSSALMLAKQFIESG-SDCTLALGFEKMEKGSLG 103 (110)
Q Consensus 69 ~sg~~al~~A~~~i~sG-~~~vlv~g~e~~s~~~~~ 103 (110)
+||+.++..|+..|++| +|.+|++|+|+||+.++.
T Consensus 93 ~SG~~Av~~A~~~I~sG~~dvvlagG~E~mS~~~~~ 128 (392)
T COG0183 93 ASGLAAVRLAAQAIASGEADVVLAGGVEKMSDAPMG 128 (392)
T ss_pred hhHHHHHHHHHHHHHCCCCCEEEEEeeeeccCCCcc
Confidence 99999999999999999 999999999999999973
No 89
>PLN02854 3-ketoacyl-CoA synthase
Probab=99.50 E-value=2.3e-13 Score=101.99 Aligned_cols=95 Identities=12% Similarity=0.165 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch---hHHHHHcCCC-CCCeeeEe-ccchHHHHHHHHHHHHHHcC-
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG---QRALYQIGMT-GIPVFNVN-NNCSTGSSALMLAKQFIESG- 85 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~---~~~a~~lg~~-~~~~~~i~-~~C~sg~~al~~A~~~i~sG- 85 (110)
.....++.++|+++|++|+|||.+|++ ++++...| ..+.+.+|++ ++.+++++ .||+++..+|..|.++++++
T Consensus 190 ~v~~~~~~~lL~kaGi~p~dID~LIv~-cS~~~p~PSlAa~I~n~LGlr~~i~afdLsgmGCSggl~aL~lA~~lL~~~~ 268 (521)
T PLN02854 190 AVMFGALDSLFSKTGVKPRDIGILIVN-CSLFNPTPSLSAMIVNHYKLRTDIKSYNLGGMGCSAGLISIDLANDLLKANP 268 (521)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEE-CCCCCCCCCHHHHHHHHhCCCCCceEEecccchhhhHHHHHHHHHHHHHhCC
Confidence 466778889999999999999999985 44554333 4577899997 78899998 89999999999999999999
Q ss_pred CCeEEEEeeccCCCCCCCCCCC
Q psy13271 86 SDCTLALGFEKMEKGSLGAKSK 107 (110)
Q Consensus 86 ~~~vlv~g~e~~s~~~~~~~~~ 107 (110)
.+++||+++|.+|...+..+++
T Consensus 269 ~~~aLVVstE~~S~~~y~g~Dr 290 (521)
T PLN02854 269 NSYAVVVSTENITLNWYFGNDR 290 (521)
T ss_pred CCeEEEEEEeeeecCCCCCCch
Confidence 9999999999988444333333
No 90
>PRK08257 acetyl-CoA acetyltransferase; Validated
Probab=99.50 E-value=3.6e-13 Score=100.97 Aligned_cols=93 Identities=15% Similarity=0.077 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHHHHcCCC--ccccCeEEEEeecCCC--cchhHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHHH
Q psy13271 8 TDYPELAKEALIKALDDAGIS--INQVQQACCGYVYGDS--TCGQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIE 83 (110)
Q Consensus 8 ~~~~~l~~~a~~~al~~agl~--~~~id~vi~~~~~~~~--~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i~ 83 (110)
.++.+|+.+|+++||+|+|++ +++||.+++++..... ..+..++..+|+.+.+......+|+++..++..|+..|+
T Consensus 25 ~s~~~L~~eA~~~Al~DAGl~~~~~dID~v~v~~~~~~~~~~~~~~la~~lGl~p~~~~~~~~GG~s~~~~v~~Aa~~Ia 104 (498)
T PRK08257 25 LEPVDLMAAAARAAAADAGADAVLEAIDSVAVVNQLSWRYRDPPGLLAERLGADPARTVYSPVGGNSPQRLVNEAALRIA 104 (498)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcCHHHCCEEEEeccccccccCHHHHHHHHcCCCCcceeEecCCCHHHHHHHHHHHHHHH
Confidence 388999999999999999999 9999999887653221 234567889999766666667888999999999999999
Q ss_pred cC-CCeEEEEeeccCCCC
Q psy13271 84 SG-SDCTLALGFEKMEKG 100 (110)
Q Consensus 84 sG-~~~vlv~g~e~~s~~ 100 (110)
+| +|+|||+|+|+++..
T Consensus 105 sG~advVLv~G~E~~~~~ 122 (498)
T PRK08257 105 AGEADVALVAGAEAQSTA 122 (498)
T ss_pred CCCCCEEEEeeeeecccc
Confidence 99 999999999998654
No 91
>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=99.46 E-value=3.2e-13 Score=99.03 Aligned_cols=87 Identities=32% Similarity=0.435 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHcCCCccccC----eEEEEeecCCCc----------------------chhHHHHHcCCCCCCeeeE
Q psy13271 11 PELAKEALIKALDDAGISINQVQ----QACCGYVYGDST----------------------CGQRALYQIGMTGIPVFNV 64 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~~id----~vi~~~~~~~~~----------------------~~~~~a~~lg~~~~~~~~i 64 (110)
..|+.+|+++||+++|++++++| +|++++..+++. ....++..+|+++ |++++
T Consensus 88 ~~l~~~aa~~Al~dAGl~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~lgl~g-~~~~v 166 (424)
T smart00825 88 QRLLLEVAWEALEDAGIDPESLRGSRTGVFVGAMSSDYAELLARDPEDIEGYAATGTARSFIANRISYFFDLRG-PSVTV 166 (424)
T ss_pred HHHHHHHHHHHHHHcCCChhHcCCCCCEEEEEEcHHHHHHHHhhCccccchhhhccchhHHHHHHHHHHhCCCC-Ccccc
Confidence 34899999999999999999998 788887643321 1124667899986 89999
Q ss_pred eccchHHHHHHHHHHHHHHcC-CCeEEEEeeccCC
Q psy13271 65 NNNCSTGSSALMLAKQFIESG-SDCTLALGFEKME 98 (110)
Q Consensus 65 ~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~s 98 (110)
+.+|+|+..||..|+++|++| +|++||+++|.+.
T Consensus 167 ~~acasg~~Al~~A~~~I~~G~~d~vlvgg~~~~~ 201 (424)
T smart00825 167 DTACSSSLVALHLACQSLRSGECDMALAGGVNLIL 201 (424)
T ss_pred ccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeecC
Confidence 999999999999999999999 9999999999743
No 92
>PLN00415 3-ketoacyl-CoA synthase
Probab=99.43 E-value=1.6e-12 Score=96.26 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=76.5
Q ss_pred CCHHHHHHH-HHHHHHHHcCCCccccCeEEEEeecCCCcch---hHHHHHcCCC-CCCeeeEec-cchHHHHHHHHHHHH
Q psy13271 8 TDYPELAKE-ALIKALDDAGISINQVQQACCGYVYGDSTCG---QRALYQIGMT-GIPVFNVNN-NCSTGSSALMLAKQF 81 (110)
Q Consensus 8 ~~~~~l~~~-a~~~al~~agl~~~~id~vi~~~~~~~~~~~---~~~a~~lg~~-~~~~~~i~~-~C~sg~~al~~A~~~ 81 (110)
+...+|+.. |++++|+++|++|+|||.+|+. +++....| ..+.+.+|++ ++..++++. ||+++..+|..|.++
T Consensus 131 ~~e~em~i~~A~~~aL~~aGi~p~dID~LIvs-~T~~~~~Pslaa~l~~~LGLr~~v~~~dL~gmGCsggv~aL~lA~~l 209 (466)
T PLN00415 131 RHESELVIFGALNSLFKKTGIEPREVGIFIVN-CSLFNPNPSLSSMIVNRYKLKTDVKTYNLSGMGCSAGAISVDLATNL 209 (466)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-CcCCCCCchHHHHHHHHhCCCCCceEEEeccccchHHHHHHHHHHHH
Confidence 444556655 7778899999999999998864 44543223 4577889997 788999986 999999999999999
Q ss_pred HHcC-CCeEEEEeeccCCCCCC
Q psy13271 82 IESG-SDCTLALGFEKMEKGSL 102 (110)
Q Consensus 82 i~sG-~~~vlv~g~e~~s~~~~ 102 (110)
++++ ..++||+++|.+|...+
T Consensus 210 l~a~~~~~aLVVs~E~~S~~~~ 231 (466)
T PLN00415 210 LKANPNTYAVIVSTENMTLSMY 231 (466)
T ss_pred HHhCCCCEEEEEEEeccccccc
Confidence 9999 99999999999886543
No 93
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=99.42 E-value=1.1e-12 Score=95.61 Aligned_cols=89 Identities=26% Similarity=0.452 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHHHcCCCccccC----eEEEEeecCCC-----------------------------cchhHHHHHcC
Q psy13271 9 DYPELAKEALIKALDDAGISINQVQ----QACCGYVYGDS-----------------------------TCGQRALYQIG 55 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~~~~id----~vi~~~~~~~~-----------------------------~~~~~~a~~lg 55 (110)
+..+|+.++++++|+++|++++++| ++++++..++. .....++..+|
T Consensus 70 ~~~~l~~~aa~~AL~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 149 (406)
T cd00834 70 RFAQFALAAAEEALADAGLDPEELDPERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLG 149 (406)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCccceEEEEccCCcchHHHHHHHHHHHhcCCcccChhHHhhhcccHHHHHHHHHhC
Confidence 4557999999999999999988877 46776654321 01234667899
Q ss_pred CCCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeeccCC
Q psy13271 56 MTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKME 98 (110)
Q Consensus 56 ~~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~s 98 (110)
+++ +.++++.+|+|++.||+.|+++|++| +|++||+++|.++
T Consensus 150 l~g-~~~~v~~acas~~~Al~~A~~~i~~G~~d~aLvgg~d~~~ 192 (406)
T cd00834 150 LRG-PNYTVSTACASGAHAIGDAARLIRLGRADVVIAGGAEALI 192 (406)
T ss_pred CCC-cccccchHHHHHHHHHHHHHHHHHcCCCCEEEEcCccccc
Confidence 975 89999999999999999999999999 9999999999875
No 94
>KOG1390|consensus
Probab=99.42 E-value=8e-13 Score=93.11 Aligned_cols=99 Identities=29% Similarity=0.396 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhH----HHHHcCCC-CCCeeeEeccchHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQR----ALYQIGMT-GIPVFNVNNNCSTGSSALMLAKQ 80 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~----~a~~lg~~-~~~~~~i~~~C~sg~~al~~A~~ 80 (110)
+..+..+|+..|++.+|+++.++++|++-+|+|+..+.. .++. .+--.|+. .+++++++..|+||+.|+.+|++
T Consensus 26 ssl~A~~Lgsvaikaalera~v~~~~v~eVi~GnVl~An-lGQapaRQaalgAGlp~sv~~tTvNkvCaSgmKAv~laaQ 104 (396)
T KOG1390|consen 26 SSLTATELGSVAIKAALERAVVPPSDVAEVIFGNVLSAN-LGQAPARQAALGAGLPYSVPATTVNKVCASGMKAVILAAQ 104 (396)
T ss_pred ccCchhhHHHHHHHHHHHhcCCCHHHhhhhhhccccccc-cCcchHHHHHhhcCCCcceeeEeehhhhhhhHHHHHHHHH
Confidence 678899999999999999999999999999998765322 2232 33345674 57899999999999999999999
Q ss_pred HHHcC-CCeEEEEeeccCCCCCCCCC
Q psy13271 81 FIESG-SDCTLALGFEKMEKGSLGAK 105 (110)
Q Consensus 81 ~i~sG-~~~vlv~g~e~~s~~~~~~~ 105 (110)
.|+.| .|.++.+|.|.||..|+...
T Consensus 105 sI~~G~~divVaGGmEsMS~vP~~~~ 130 (396)
T KOG1390|consen 105 SIQTGHADIVVAGGMESMSNVPYLYV 130 (396)
T ss_pred HHhcCCccEEEecccchhccCcchhh
Confidence 99999 99999999999999994433
No 95
>KOG1391|consensus
Probab=99.42 E-value=4.4e-13 Score=92.52 Aligned_cols=106 Identities=22% Similarity=0.323 Sum_probs=92.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCC-----CCCeeeEeccchHHHHHH
Q psy13271 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT-----GIPVFNVNNNCSTGSSAL 75 (110)
Q Consensus 1 f~~~~~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~-----~~~~~~i~~~C~sg~~al 75 (110)
||...++.+..+|..-|++.+|+.+++.++.+|.+|+++.......+-++++..|++ ..|..+|+.-|.||.+++
T Consensus 19 fGG~LKg~~aTdL~~~AakAAL~aa~v~~e~VD~VI~GNV~aSSsDgIYl~RHvGL~~GvP~e~pALtiNRLCGSGFQsi 98 (396)
T KOG1391|consen 19 FGGKLKGLSATDLGVVAAKAALKAANVGAEAVDHVIMGNVLASSSDGIYLARHVGLRVGVPKETPALTINRLCGSGFQSI 98 (396)
T ss_pred ccccccCcchhhHHHHHHHHHHhhcCCChhhcceEEEeeeeeccCCceEeeeccccccCCcCccCceeehhhhcccHHHH
Confidence 344448899999999999999999999999999999998866555566777776663 368999999999999999
Q ss_pred HHHHHHHHcC-CCeEEEEeeccCCCCCCCCCC
Q psy13271 76 MLAKQFIESG-SDCTLALGFEKMEKGSLGAKS 106 (110)
Q Consensus 76 ~~A~~~i~sG-~~~vlv~g~e~~s~~~~~~~~ 106 (110)
..+++.|.-| ++.+|++|.|.||..||-.++
T Consensus 99 VNgaQ~I~vgea~ivL~GGtEnMSq~Pf~vRn 130 (396)
T KOG1391|consen 99 VNGAQEICVGEAEIVLCGGTENMSQAPFCVRN 130 (396)
T ss_pred HhhHHHhhcCcceEEEecCccccccCcceeee
Confidence 9999999999 999999999999999987664
No 96
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.40 E-value=2.5e-12 Score=94.13 Aligned_cols=89 Identities=25% Similarity=0.352 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHHHcCCCccccC----eEEEEeecCCC---------------------c--------chhHHHHHcC
Q psy13271 9 DYPELAKEALIKALDDAGISINQVQ----QACCGYVYGDS---------------------T--------CGQRALYQIG 55 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~~~~id----~vi~~~~~~~~---------------------~--------~~~~~a~~lg 55 (110)
+...|+.+++++||+++|++++++| ++++++..+.. . ....++..+|
T Consensus 71 ~~~~l~~~aa~~Al~dAGl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~g 150 (411)
T PRK07314 71 RFIQYGIAAAKQAVEDAGLEITEENADRIGVIIGSGIGGLETIEEQHITLLEKGPRRVSPFFVPMAIINMAAGHVSIRYG 150 (411)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCcccEEEEEecCcCChHHHHHHHHHHHhcCccccChhhhhhhcchHHHHHHHHHhC
Confidence 3457899999999999999999888 67777643211 0 1124667899
Q ss_pred CCCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeeccCC
Q psy13271 56 MTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKME 98 (110)
Q Consensus 56 ~~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~s 98 (110)
+++ |.++++++|+|++.||..|+++|++| +|++||+|+|.+.
T Consensus 151 l~G-p~~tv~~acaSgl~Al~~A~~~I~~G~~d~vlvgg~~~~~ 193 (411)
T PRK07314 151 AKG-PNHSIVTACATGAHAIGDAARLIAYGDADVMVAGGAEAAI 193 (411)
T ss_pred CCC-ccccchhhhHHHHHHHHHHHHHHhcCCCCEEEEeeecccC
Confidence 986 89999999999999999999999999 9999999999743
No 97
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=99.39 E-value=2.9e-12 Score=93.64 Aligned_cols=89 Identities=30% Similarity=0.265 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHHHcCCCccc-cC----eEEEEeecCCC---------------------------cchhHHHHHcCC
Q psy13271 9 DYPELAKEALIKALDDAGISINQ-VQ----QACCGYVYGDS---------------------------TCGQRALYQIGM 56 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~~~~-id----~vi~~~~~~~~---------------------------~~~~~~a~~lg~ 56 (110)
+...|+.+++++||+++|+++++ ++ ++++++..++. .....++..+|+
T Consensus 71 ~~~~l~~~aa~~Al~dAGl~~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 150 (407)
T cd00828 71 RTTLLALVATEEALADAGITDPYEVHPSEVGVVVGSGMGGLRFLRRGGKLDARAVNPYVSPKWMLSPNTVAGWVNILLLS 150 (407)
T ss_pred HHHHHHHHHHHHHHHhCCCCccccCCccCeEEEEeeccCCHHHHHHHHHHHhhccCCcccchhccccchHHHHHHHHhCc
Confidence 45678999999999999998877 55 57777653321 112346678899
Q ss_pred -CCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeeccCC
Q psy13271 57 -TGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKME 98 (110)
Q Consensus 57 -~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~s 98 (110)
++ |+++++++|+|++.||..|+++|++| +|.+||+|+|.++
T Consensus 151 ~~G-p~~tv~~aCaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~ 193 (407)
T cd00828 151 SHG-PIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPL 193 (407)
T ss_pred CCC-CCcCcccHHHHHHHHHHHHHHHHHcCCCCEEEEccccccC
Confidence 65 89999999999999999999999999 9999999999875
No 98
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=99.39 E-value=4.8e-12 Score=88.64 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCc--chhHHHHHcCCC-CCCeeeE-eccchHHHHHHHHHHHHHHcC-
Q psy13271 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDST--CGQRALYQIGMT-GIPVFNV-NNNCSTGSSALMLAKQFIESG- 85 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~--~~~~~a~~lg~~-~~~~~~i-~~~C~sg~~al~~A~~~i~sG- 85 (110)
..++..++.++|+++|++|+|||.+|+.++..... ....+.+.+|++ ++..+.+ +.||++|+.+|..|.++++..
T Consensus 84 e~v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~mr~di~~~nLsGMGCsAgliai~lA~~lL~~~p 163 (290)
T PF08392_consen 84 EMVIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGMRSDIKSYNLSGMGCSAGLIAIDLAKDLLQAHP 163 (290)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCCCcCeeeecccCCcchhhHHHHHHHHHHHHhCC
Confidence 34778899999999999999999999987754332 345678899996 5777877 489999999999999999999
Q ss_pred CCeEEEEeeccCCCCCCCCCCCC
Q psy13271 86 SDCTLALGFEKMEKGSLGAKSKP 108 (110)
Q Consensus 86 ~~~vlv~g~e~~s~~~~~~~~~~ 108 (110)
-.++||+.+|..+...+..++|+
T Consensus 164 ~~~ALVVstE~~s~~~Y~G~~rs 186 (290)
T PF08392_consen 164 NSYALVVSTENISANWYRGNDRS 186 (290)
T ss_pred CcEEEEEEEeecccccccCCcHH
Confidence 99999999999998888777664
No 99
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Probab=99.39 E-value=3.1e-12 Score=94.20 Aligned_cols=89 Identities=21% Similarity=0.271 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHHHHcCCC-ccccC----eEEEEeecCCCc-----------------------------chhHHHHH
Q psy13271 8 TDYPELAKEALIKALDDAGIS-INQVQ----QACCGYVYGDST-----------------------------CGQRALYQ 53 (110)
Q Consensus 8 ~~~~~l~~~a~~~al~~agl~-~~~id----~vi~~~~~~~~~-----------------------------~~~~~a~~ 53 (110)
.+..+|+..++++||+++|++ +++++ ++++++..+... ....++..
T Consensus 75 ~~~~~l~~~aa~~Al~dAGl~~~~~~~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~ 154 (421)
T PTZ00050 75 SRATHFAMAAAREALADAKLDILSEKDQERIGVNIGSGIGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIK 154 (421)
T ss_pred CHHHHHHHHHHHHHHHHcCCCcccccCcccEEEEEccCcccHHHHHHHHHHHHhcCcCcCCHHHHHhhhhhHHHHHHHHH
Confidence 445789999999999999998 67666 455555433210 01235567
Q ss_pred cCCCCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeeccC
Q psy13271 54 IGMTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97 (110)
Q Consensus 54 lg~~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~ 97 (110)
+|+++ |++++.++|+|++.||.+|+++|++| +|.+|++|+|.+
T Consensus 155 ~~l~G-p~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~lvgG~e~~ 198 (421)
T PTZ00050 155 HKLKG-PSGSAVTACATGAHCIGEAFRWIKYGEADIMICGGTEAS 198 (421)
T ss_pred hCCCC-cccccccHhHHHHHHHHHHHHHHHcCCCCEEEECccccc
Confidence 89987 99999999999999999999999999 999999999973
No 100
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=99.39 E-value=3.6e-12 Score=93.01 Aligned_cols=87 Identities=26% Similarity=0.391 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCe----EEEEeecCCCc-----------------------------chhHHHHHcCC
Q psy13271 10 YPELAKEALIKALDDAGISINQVQQ----ACCGYVYGDST-----------------------------CGQRALYQIGM 56 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id~----vi~~~~~~~~~-----------------------------~~~~~a~~lg~ 56 (110)
..+|+.++++++|+++|++++++|. +++++..+... ....++..+|+
T Consensus 71 ~~~l~~~aa~~Al~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 150 (407)
T TIGR03150 71 FIQYALAAAKEAVEDSGLDIEEEDAERVGVIIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYGA 150 (407)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCccceEEEEecCCCchHHHHHHHHHHHhcCccccChhhhhcccccHHHHHHHHHhCC
Confidence 3578999999999999999999885 67665432110 11236677899
Q ss_pred CCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeeccC
Q psy13271 57 TGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97 (110)
Q Consensus 57 ~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~ 97 (110)
++ |.++++++|+|++.||..|+++|++| +|++||+|+|.+
T Consensus 151 ~g-~~~~v~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~e~~ 191 (407)
T TIGR03150 151 KG-PNHAVVTACATGTHAIGDAFRLIQRGDADVMIAGGAEAA 191 (407)
T ss_pred CC-cccccccHHHHHHHHHHHHHHHHhcCCCCEEEEecccCc
Confidence 75 89999999999999999999999999 999999999974
No 101
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=99.36 E-value=3.4e-12 Score=93.29 Aligned_cols=88 Identities=31% Similarity=0.384 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHcCCCccccC----eEEEEeecCCCc----------------------chhHHHHHcCCCCCCeee
Q psy13271 10 YPELAKEALIKALDDAGISINQVQ----QACCGYVYGDST----------------------CGQRALYQIGMTGIPVFN 63 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id----~vi~~~~~~~~~----------------------~~~~~a~~lg~~~~~~~~ 63 (110)
..+|+.+|++++|+++|+++++++ ++++++..+++. ....++..+|+++ |.++
T Consensus 87 ~~~l~~~aa~~AL~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~gl~g-~~~~ 165 (421)
T cd00833 87 QQRLLLEVAWEALEDAGYSPESLAGSRTGVFVGASSSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDLRG-PSLT 165 (421)
T ss_pred HHHHHHHHHHHHHHHcCCCchhcCCCCceEEeCcCHHHHHHHHhhcccccCcccccCcchHHHHHHHHHHcCCCC-Ccee
Confidence 467999999999999999998877 477776543210 1234677899976 9999
Q ss_pred EeccchHHHHHHHHHHHHHHcC-CCeEEEEeeccCC
Q psy13271 64 VNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKME 98 (110)
Q Consensus 64 i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~s 98 (110)
++++|+|+..||..|+++|++| +|++||+|+|.+.
T Consensus 166 v~~acas~~~Al~~A~~~I~~G~~d~~lvgg~~~~~ 201 (421)
T cd00833 166 VDTACSSSLVALHLACQSLRSGECDLALVGGVNLIL 201 (421)
T ss_pred eccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeccC
Confidence 9999999999999999999999 9999999999753
No 102
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.36 E-value=5.7e-12 Score=92.69 Aligned_cols=87 Identities=24% Similarity=0.319 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHcCCCcccc-C----eEEEEeecCCCc-----------------------------chhHHHHHcC
Q psy13271 10 YPELAKEALIKALDDAGISINQV-Q----QACCGYVYGDST-----------------------------CGQRALYQIG 55 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~i-d----~vi~~~~~~~~~-----------------------------~~~~~a~~lg 55 (110)
...|+..+++++|+++|++++++ + ++++++..+... ....++..+|
T Consensus 82 ~~~l~~~aa~~Al~dAgl~~~~~~~~~~~Gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~g 161 (424)
T PRK06333 82 FILFAMAAAKEALAQAGWDPDTLEDRERTATIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSIRYG 161 (424)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCcccEEEEEecCcccHHHHHHHHHHHHhcCCcccChhHHhhhhhhHHHHHHHHHhC
Confidence 34688999999999999988776 3 677776543210 0124567789
Q ss_pred CCCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeeccC
Q psy13271 56 MTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97 (110)
Q Consensus 56 ~~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~ 97 (110)
+++ |+++++++|+|++.||+.|+++|++| +|.+||+|+|.+
T Consensus 162 l~G-p~~~v~~aCaSg~~Al~~A~~~I~~G~~d~alvgG~e~~ 203 (424)
T PRK06333 162 FKG-PLGAPVTACAAGVQAIGDAARLIRSGEADVAVCGGTEAA 203 (424)
T ss_pred CCC-CCccccchhHHHHHHHHHHHHHHHcCCCCEEEEeeeccc
Confidence 976 99999999999999999999999999 999999999973
No 103
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=99.34 E-value=1.9e-11 Score=83.24 Aligned_cols=90 Identities=23% Similarity=0.328 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch--hHHHHHcCCCC-CCeeeE-eccchHHHHHHHHHHHHHHcC
Q psy13271 10 YPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG--QRALYQIGMTG-IPVFNV-NNNCSTGSSALMLAKQFIESG 85 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~--~~~a~~lg~~~-~~~~~i-~~~C~sg~~al~~A~~~i~sG 85 (110)
..+|+.+|+++||+++|++++||+.+|+.++++-..++ ..+.+.|||++ +.-+.+ ..||.+|..+|..|..+.++.
T Consensus 100 a~~L~~~Aa~~AL~~~g~~~~dIthlv~vs~TG~~~PglD~~l~~~LgL~~~v~R~~i~~~GC~gg~~~L~~A~~~~~~~ 179 (226)
T PF00195_consen 100 APPLAEEAARKALAEAGLDPSDITHLVTVSCTGIAAPGLDARLINRLGLRPDVQRTPIFGMGCAGGAAGLRRAKDIARAN 179 (226)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGGECEEEEEESSSSECS-HHHHHHHHHT--TTSEEEEEES-GGGHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCCCcccceEEEEecCCcCCCchhHHHHhcCCCCCCcEEEEEeccchhhHHHHHHHHHHHHhCC
Confidence 45699999999999999999999999999988755443 36789999964 444444 589999999999999999999
Q ss_pred -CCeEEEEeeccCCC
Q psy13271 86 -SDCTLALGFEKMEK 99 (110)
Q Consensus 86 -~~~vlv~g~e~~s~ 99 (110)
-.+|||+.+|..|-
T Consensus 180 p~a~VLvv~vElcsl 194 (226)
T PF00195_consen 180 PGARVLVVCVELCSL 194 (226)
T ss_dssp TT-EEEEEEEEEGGG
T ss_pred ccceEEEEEEEeeEE
Confidence 99999999998763
No 104
>PRK07937 lipid-transfer protein; Provisional
Probab=99.33 E-value=1.7e-11 Score=88.60 Aligned_cols=94 Identities=23% Similarity=0.278 Sum_probs=70.0
Q ss_pred CCCCCCCCCH-HHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch-----hHHHHHcCC-CCCCeeeEeccchHHHH
Q psy13271 1 FQKPKEDTDY-PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG-----QRALYQIGM-TGIPVFNVNNNCSTGSS 73 (110)
Q Consensus 1 f~~~~~~~~~-~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~-----~~~a~~lg~-~~~~~~~i~~~C~sg~~ 73 (110)
|+|..++.+. .+|+.+|+++||+|+|++++|||+++.+.. +.... ......+|+ .+.+...++ ++|..
T Consensus 14 ~~~~~~~~~~~~el~~eA~~~Al~DAgl~~~dID~~~~~~~--~~~~~~~~~~~~~~~~~G~~~~~~~~~v~---~~g~~ 88 (352)
T PRK07937 14 HVRRTDGTTNGVEMLMPCFAELYAELGITKSDIGFWCSGSS--DYLAGRAFSFISAIDSIGAVPPINESHVE---MDAAW 88 (352)
T ss_pred cccCCCCCCcHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcc--ccccccccchhhHHhhccCCCCCceEEec---CcHHH
Confidence 5665224555 899999999999999999999998864422 22111 123456777 344565555 36888
Q ss_pred HHHHHHHHHHcC-CCeEEEEeeccCCC
Q psy13271 74 ALMLAKQFIESG-SDCTLALGFEKMEK 99 (110)
Q Consensus 74 al~~A~~~i~sG-~~~vlv~g~e~~s~ 99 (110)
++..|+..|++| +|+|||++.|+++.
T Consensus 89 a~~~A~~aI~sG~~d~VLv~g~~k~~~ 115 (352)
T PRK07937 89 ALYEAWVKLLTGEVDTALVYGFGKSSA 115 (352)
T ss_pred HHHHHHHHHhcCCCCEEEEEEecccCc
Confidence 999999999999 99999999998753
No 105
>PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.33 E-value=1e-11 Score=91.05 Aligned_cols=86 Identities=24% Similarity=0.364 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHcCCCccccC----eEEEEeecCCC-----------------------------cchhHHHHHcCC
Q psy13271 10 YPELAKEALIKALDDAGISINQVQ----QACCGYVYGDS-----------------------------TCGQRALYQIGM 56 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id----~vi~~~~~~~~-----------------------------~~~~~~a~~lg~ 56 (110)
...|+..++++||+++|+++++++ ++++++..+.. .....++..+|+
T Consensus 72 ~~~l~~~Aa~~AL~dAGl~~~~~~~~r~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 151 (406)
T PRK08439 72 FIQLGLKAAREAMKDAGFLPEELDAERFGVSSASGIGGLPNIEKNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGL 151 (406)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCCEEEEEecCCccHHHHHHHHHHHHhcCccccCchhcccccccHHHHHHHHHhCC
Confidence 457889999999999999988776 46665533211 011245678999
Q ss_pred CCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeecc
Q psy13271 57 TGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEK 96 (110)
Q Consensus 57 ~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~ 96 (110)
++ |++++.++|+|+..||..|+++|++| +|++|++|+|.
T Consensus 152 ~G-p~~~~~~acas~~~Al~~A~~~i~~G~~d~~lv~g~d~ 191 (406)
T PRK08439 152 KG-PNLSSVTACAAGTHAIIEAVKTIMLGGADKMLVVGAES 191 (406)
T ss_pred CC-CccccccHhHHHHHHHHHHHHHHHcCCCCEEEEecchh
Confidence 87 88999999999999999999999999 99999999996
No 106
>PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B ....
Probab=99.32 E-value=2.2e-11 Score=83.68 Aligned_cols=88 Identities=31% Similarity=0.482 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHcCCCccccC-----eEEEEeecCCC-------------------cc--------hhHHHHHcCCC
Q psy13271 10 YPELAKEALIKALDDAGISINQVQ-----QACCGYVYGDS-------------------TC--------GQRALYQIGMT 57 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id-----~vi~~~~~~~~-------------------~~--------~~~~a~~lg~~ 57 (110)
...|+..++.+||+++|+++.+++ ++++|+..+++ .. ...++..+|++
T Consensus 87 ~~~~~l~aa~~Al~dAg~~~~~~~~~~r~gv~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~ 166 (254)
T PF00109_consen 87 QSRLALAAAREALEDAGLDPDDLDGERRVGVFVGSSSGDYEFYRALDEDGETPRDVSPWFVPNTLPNSAAGRIAILFGLR 166 (254)
T ss_dssp HHHHHHHHHHHHHHHHTSTGGGHTGGGTEEEEEEESSSHHHHHHHHHHHTTCGGGSHTTHHHHHSTTHHHHHHHHHHTB-
T ss_pred hhhHHHHHhhhhcccccccccccccccceeeccccccccccccccccccccccccccccccCcccccccccchhhhcCCC
Confidence 446899999999999999886543 57777765521 00 12456779999
Q ss_pred CCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeec-cCC
Q psy13271 58 GIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFE-KME 98 (110)
Q Consensus 58 ~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e-~~s 98 (110)
+ |+++++++|+|++.||+.|+++|++| +|.+||+++| .++
T Consensus 167 G-~~~tv~~acaSgl~Al~~A~~~I~~G~~d~~lvgg~d~~~~ 208 (254)
T PF00109_consen 167 G-PSYTVSTACASGLAALEAAYRAIRSGEADVALVGGVDAPLS 208 (254)
T ss_dssp S-SEEEEE-GGGHHHHHHHHHHHHHHTTSSSEEEEEEEE--SS
T ss_pred C-ccccccccccccccccchhcccccccccccccccccccccc
Confidence 7 99999999999999999999999999 9999999999 344
No 107
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.31 E-value=2.4e-11 Score=89.41 Aligned_cols=87 Identities=26% Similarity=0.379 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHcCCCccccC----eEEEEeecCCCc-----------------------------chhHHHHHcCCC
Q psy13271 11 PELAKEALIKALDDAGISINQVQ----QACCGYVYGDST-----------------------------CGQRALYQIGMT 57 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~~id----~vi~~~~~~~~~-----------------------------~~~~~a~~lg~~ 57 (110)
..++..++++||+++|+++++.+ ++++|+..+... ...+++..+|++
T Consensus 75 ~~~~l~a~~~Al~dAGl~~~~~~~~r~Gv~vGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~gl~ 154 (414)
T PRK08722 75 IQYGIAAGIQALDDSGLEVTEENAHRIGVAIGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLR 154 (414)
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCEEEEEeeCCCcchhHHHHHHHHHhcCcccCCchhcccccccHHHHHHHHHhCCC
Confidence 35788899999999999765544 678877543210 112456678999
Q ss_pred CCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeeccCC
Q psy13271 58 GIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKME 98 (110)
Q Consensus 58 ~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~s 98 (110)
+ |+++++++|+|++.||..|+++|++| +|.+||+|+|...
T Consensus 155 G-p~~ti~~aCas~~~Al~~A~~~i~~G~~d~~lvgg~d~~~ 195 (414)
T PRK08722 155 G-PNIAISTACTTGLHNIGHAARMIAYGDADAMVAGGAEKAS 195 (414)
T ss_pred C-CccccccccHHHHHHHHHHHHHHHcCCCCEEEEecccccC
Confidence 7 99999999999999999999999999 9999999999853
No 108
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase
Probab=99.30 E-value=2.6e-11 Score=89.71 Aligned_cols=87 Identities=25% Similarity=0.267 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHHHcCCCcc-----ccCeEEEEeecCCCc-----------------------------chhHHHHHc
Q psy13271 9 DYPELAKEALIKALDDAGISIN-----QVQQACCGYVYGDST-----------------------------CGQRALYQI 54 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~~~-----~id~vi~~~~~~~~~-----------------------------~~~~~a~~l 54 (110)
....|+.+|+++||+++|+++. +..++++|+..+... ....++..+
T Consensus 92 ~~~~~~~~aa~~Al~dAg~~~~~~~~~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~ 171 (437)
T PLN02836 92 RFIGYALCAADEALSDARWLPSEDEAKERTGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRILINMAAGHVSIRY 171 (437)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccCCcCEEEEEeeccCcHHHHHHHHHHHHhcCCCCCChhhhhhhcccHHHHHHHHHh
Confidence 3457899999999999998643 345788887543210 012466788
Q ss_pred CCCCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeecc
Q psy13271 55 GMTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEK 96 (110)
Q Consensus 55 g~~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~ 96 (110)
|+++ |++++.++|+|+..||..|+++|++| +|.+||+|+|.
T Consensus 172 gl~G-p~~tv~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~~~ 213 (437)
T PLN02836 172 GFQG-PNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTES 213 (437)
T ss_pred CCCC-ceeceeChhHHHHHHHHHHHHHHHcCCCCEEEEccccc
Confidence 9987 99999999999999999999999999 99999999986
No 109
>PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=99.28 E-value=3.6e-11 Score=88.37 Aligned_cols=88 Identities=24% Similarity=0.300 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHcCCCccccC----eEEEEeecCCCc------------------------------chhHHHHHcC
Q psy13271 10 YPELAKEALIKALDDAGISINQVQ----QACCGYVYGDST------------------------------CGQRALYQIG 55 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id----~vi~~~~~~~~~------------------------------~~~~~a~~lg 55 (110)
...++..|+++||+++|+++++++ ++++++..+... ....++..+|
T Consensus 71 ~~~~a~~aa~~Al~dAGl~~~~~~~~rvGv~~gs~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~~ 150 (406)
T PRK07967 71 ASAYAYLAMEQAIADAGLSEEQVSNPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVSACLATPFK 150 (406)
T ss_pred HHHHHHHHHHHHHHHcCCCCccCCCCCEEEEEecCCccHHHHHHHHHHHHhccCcccCCchhhcccccchHHHHHHHHHC
Confidence 446888999999999999765544 577776432210 0123567899
Q ss_pred CCCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeeccCC
Q psy13271 56 MTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKME 98 (110)
Q Consensus 56 ~~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~s 98 (110)
+++ |+++++++|+|++.||..|+++|++| +|++|++|+|.++
T Consensus 151 l~G-p~~tvs~aCas~~~Ai~~A~~~ir~G~~d~~lvgg~d~~~ 193 (406)
T PRK07967 151 IKG-VNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELD 193 (406)
T ss_pred CCC-CccccccHhHHHHHHHHHHHHHHHcCCCCEEEEeeecccC
Confidence 987 99999999999999999999999999 9999999998754
No 110
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated
Probab=99.26 E-value=5.2e-11 Score=85.92 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHHHcC-CCccccCeEEEEee-----cCCCcc---hhHHHHHcCCCC-CCeeeEeccchHHHHHHHH
Q psy13271 8 TDYPELAKEALIKALDDAG-ISINQVQQACCGYV-----YGDSTC---GQRALYQIGMTG-IPVFNVNNNCSTGSSALML 77 (110)
Q Consensus 8 ~~~~~l~~~a~~~al~~ag-l~~~~id~vi~~~~-----~~~~~~---~~~~a~~lg~~~-~~~~~i~~~C~sg~~al~~ 77 (110)
.+..+|+.+|++++|++++ +++++|+.++..+. .++... ...++..+|+.. .+++++.++|+|+..||..
T Consensus 63 ~r~~~La~~Al~~aL~~a~~~~~~~i~lil~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~~~i~~~casg~~Al~~ 142 (348)
T PRK06147 63 ERLAEMAAPAIAEALEGLPALDASEAPLLLCVAEEERPGRPPDLEERLLRELEARLGLRLEPGSAVIARGRVSGAVALAQ 142 (348)
T ss_pred HHHHHHHHHHHHHHHHhcccccccCCcEEEEeCchhcCCCCcchHHHHHHHHHHHhCCCCCCCcccccccchHHHHHHHH
Confidence 4677899999999999999 78999998887533 111111 134667788832 4789999999999999999
Q ss_pred HHHHHHcC-CCeEEEEeeccCCC
Q psy13271 78 AKQFIESG-SDCTLALGFEKMEK 99 (110)
Q Consensus 78 A~~~i~sG-~~~vlv~g~e~~s~ 99 (110)
|+++|++| +|.+||+|+|.++.
T Consensus 143 A~~~i~~G~~~~~lvgg~d~~~~ 165 (348)
T PRK06147 143 ARRLIAAGGCPRVLVAGVDSLLT 165 (348)
T ss_pred HHHHHHcCCCCEEEEEeeccccC
Confidence 99999999 99999999998765
No 111
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.25 E-value=7.1e-11 Score=86.61 Aligned_cols=86 Identities=29% Similarity=0.208 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHcCCCccccC----eEEEEeecCCCc----------------------------------------
Q psy13271 10 YPELAKEALIKALDDAGISINQVQ----QACCGYVYGDST---------------------------------------- 45 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id----~vi~~~~~~~~~---------------------------------------- 45 (110)
...|+..|+++||+++|++..+.+ ++++++..+...
T Consensus 73 ~~~~a~~Aa~~Al~dAGl~~~~~~~~r~GvivGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n 152 (398)
T PRK06519 73 WQRLGTYAAGLALDDAGIKGNEELLSTMDMIVAAGGGERDIAVDTAILNEARKRNDRGVLLNERLMTELRPTLFLAQLSN 152 (398)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCccceEEEEEeCCCchhHHHhhhhhhcccchhHHHHHHHhcCCCccChhhhhhhhhh
Confidence 456889999999999999654332 567776543210
Q ss_pred -chhHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeecc
Q psy13271 46 -CGQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEK 96 (110)
Q Consensus 46 -~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~ 96 (110)
....++..+|+++ |++++.++|+|++.||..|+++|++| +|.+|++|+|.
T Consensus 153 ~~a~~is~~~gl~G-p~~ti~~acaSg~~Ai~~A~~~I~~G~~d~~lvGG~d~ 204 (398)
T PRK06519 153 LLAGNISIVHKVTG-SSRTFMGEESAGVSAIEIAFARIASGQSDHALVGGAYN 204 (398)
T ss_pred HHHHHHHHHhCCCC-ccccccCCccHHHHHHHHHHHHHHcCCCCEEEEeeecc
Confidence 0123556789997 99999999999999999999999999 99999999986
No 112
>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]
Probab=99.24 E-value=3.4e-11 Score=86.87 Aligned_cols=93 Identities=25% Similarity=0.323 Sum_probs=80.7
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCc---chhHHHHHcCCC-CCCeeeEeccchHHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDST---CGQRALYQIGMT-GIPVFNVNNNCSTGSSALMLAKQF 81 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~---~~~~~a~~lg~~-~~~~~~i~~~C~sg~~al~~A~~~ 81 (110)
.+++...|+++|++++|+++++||++|+.|++++-++... ....++..||+. ...++++..+|-+|+.||+.|..+
T Consensus 47 ~~ED~vTmaveAA~~~l~r~~~D~~~Ig~v~vgTES~~d~~K~~at~v~~~lg~~~~~~~~d~~~AC~agT~aL~~a~~~ 126 (377)
T COG3425 47 WDEDAVTMAVEAARNALKRADIDPSKIGAVIVGSESGPDAVKPTATIVAEALGLNPSARAADVEFACYAGTAALQAAIGW 126 (377)
T ss_pred CchhHHHHHHHHHHHHHhccCCCHHHCceEEEecCCCcccccchHHHHHHHhCCCCceehhhHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999998755332 234577889995 467788899999999999999999
Q ss_pred HHcC-CCeEEEEeeccCC
Q psy13271 82 IESG-SDCTLALGFEKME 98 (110)
Q Consensus 82 i~sG-~~~vlv~g~e~~s 98 (110)
|.+| .+++||+++|.-.
T Consensus 127 v~s~~~~~~LvI~sD~a~ 144 (377)
T COG3425 127 VESGMISYGLVIGADTAQ 144 (377)
T ss_pred HHcCCccceEEEeehhhc
Confidence 9999 9999999999743
No 113
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=99.20 E-value=1.6e-10 Score=83.32 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHHHcCCC--ccccCeEEEEeecCCCc-----------------------------chhHHHHHcCCC
Q psy13271 9 DYPELAKEALIKALDDAGIS--INQVQQACCGYVYGDST-----------------------------CGQRALYQIGMT 57 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~--~~~id~vi~~~~~~~~~-----------------------------~~~~~a~~lg~~ 57 (110)
+..+++..|++++|+++|+. ++++ ++++|+..+... ....++..+|++
T Consensus 3 ~~~~~~~~a~~~a~~~a~~~~~~~r~-Gv~~G~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~~l~ 81 (342)
T PRK14691 3 RWWRYKWITFHPSLTHADNTEKQERT-ATIIGAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHVSIKHHFK 81 (342)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcccE-EEEEecCcccHHHHHHHHHHHHhcCccccChhHHhhhhhhHHHHHHHHHhCCC
Confidence 35678899999999999975 3332 677776543310 012355678999
Q ss_pred CCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeeccC
Q psy13271 58 GIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97 (110)
Q Consensus 58 ~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~ 97 (110)
+ |++++.++|+|++.||..|+++|++| +|.+|++|+|..
T Consensus 82 G-p~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~ivgg~d~~ 121 (342)
T PRK14691 82 G-PIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAV 121 (342)
T ss_pred C-CccccccHhHHHHHHHHHHHHHHHcCCCCEEEEeccccc
Confidence 7 99999999999999999999999999 999999999873
No 114
>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II
Probab=99.19 E-value=1.5e-10 Score=87.64 Aligned_cols=85 Identities=24% Similarity=0.345 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHcCCCcc---ccC----eEEEEeecCCCc----------------------------chhHHHHHcC
Q psy13271 11 PELAKEALIKALDDAGISIN---QVQ----QACCGYVYGDST----------------------------CGQRALYQIG 55 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~---~id----~vi~~~~~~~~~----------------------------~~~~~a~~lg 55 (110)
..++..++++||+++|++++ +++ +|++|+..+... ....++..+|
T Consensus 200 ~~~al~Aa~eAL~dAGl~~~~~~~~~~~r~GV~vGt~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~~g 279 (540)
T PLN02787 200 MLYLLTAGKKALADGGITEDVMKELDKTKCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATTNMGSAMLAMDLG 279 (540)
T ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCceEEEEEeccchHHHHHHHHHHHhhccccCCcchhhhhcccHHHHHHHHHhC
Confidence 45788899999999999764 332 688887653210 0123556789
Q ss_pred CCCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeecc
Q psy13271 56 MTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEK 96 (110)
Q Consensus 56 ~~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~ 96 (110)
+++ |.++++++|+|+..||..|+++|++| +|.+|++|+|.
T Consensus 280 l~G-p~~tistACASs~~Ai~~A~~~Ir~G~aD~aLvGG~d~ 320 (540)
T PLN02787 280 WMG-PNYSISTACATSNFCILNAANHIIRGEADVMLCGGSDA 320 (540)
T ss_pred CCC-CccccccccccHHHHHHHHHHHHHcCCCCEEEEecccc
Confidence 987 99999999999999999999999999 99999999996
No 115
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.19 E-value=1.7e-10 Score=84.80 Aligned_cols=88 Identities=25% Similarity=0.308 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHcCCCc-cccC----eEEEEeecCCCc-----------------------------chhHHHHHcC
Q psy13271 10 YPELAKEALIKALDDAGISI-NQVQ----QACCGYVYGDST-----------------------------CGQRALYQIG 55 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~-~~id----~vi~~~~~~~~~-----------------------------~~~~~a~~lg 55 (110)
...|+..++++||+++|++. ..++ ++++|+..+... ....++..+|
T Consensus 73 ~~~~al~aa~~Al~dAGl~~~~~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~ 152 (405)
T PRK09116 73 VSLMATRASELALEDAGLLGDPILTDGRMGIAYGSSTGSTDPIGAFGTMLLEGSMSGITATTYVRMMPHTTAVNVGLFFG 152 (405)
T ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCcEEEEEeecccchHHHHHHHHHHhhcCccccChhhhhhhcccHHHHHHHHHhC
Confidence 34688899999999999843 2222 677876543210 0123566799
Q ss_pred CCCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeeccCC
Q psy13271 56 MTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKME 98 (110)
Q Consensus 56 ~~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~s 98 (110)
+++ |.+++.++|+|+..||..|+++|++| +|.+|++|+|.++
T Consensus 153 ~~G-p~~ti~~acas~~~Al~~A~~~I~~G~~d~~lvgg~d~~~ 195 (405)
T PRK09116 153 LKG-RVIPTSSACTSGSQGIGYAYEAIKYGYQTVMLAGGAEELC 195 (405)
T ss_pred CCC-CcccccchhhhHHHHHHHHHHHHHcCCCCEEEEecchhcC
Confidence 997 99999999999999999999999999 9999999999754
No 116
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated
Probab=99.16 E-value=2.7e-10 Score=83.77 Aligned_cols=86 Identities=22% Similarity=0.211 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHcCCCccccC--eEEEEeecCC----------------Cc------------chhHHHHHcCCCCC
Q psy13271 10 YPELAKEALIKALDDAGISINQVQ--QACCGYVYGD----------------ST------------CGQRALYQIGMTGI 59 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id--~vi~~~~~~~----------------~~------------~~~~~a~~lg~~~~ 59 (110)
...|+..+++++|+++|+++.+.+ ++++++.... .. ....++..+|+++
T Consensus 80 ~~~lal~Aa~eAl~dAgl~~~~~~riGvivG~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~G- 158 (410)
T PRK07103 80 SAQAALAAAREAWRDAALGPVDPDRIGLVVGGSNLQQREQALVHETYRDRPAFLRPSYGLSFMDTDLVGLCSEQFGIRG- 158 (410)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCCCCEEEEEccCCcchHHHHHHHHHhccCccccChhhhhhhcchHHHHHHHHHhCCCC-
Confidence 456999999999999999643333 4555543211 00 0123557899986
Q ss_pred CeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeecc
Q psy13271 60 PVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEK 96 (110)
Q Consensus 60 ~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~ 96 (110)
|++++.++|+|++.||+.|+++|++| +|.+||+|++.
T Consensus 159 ~~~tv~~acas~~~Al~~A~~~I~~G~~d~~lv~g~~~ 196 (410)
T PRK07103 159 EGFTVGGASASGQLAVIQAARLVQSGSVDACIAVGALM 196 (410)
T ss_pred CcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecccc
Confidence 89999999999999999999999999 99999999863
No 117
>PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase. Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A ....
Probab=99.14 E-value=3.3e-10 Score=74.21 Aligned_cols=92 Identities=21% Similarity=0.270 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecC-CC--cchhHHHHHcCCC---CCCeeeEeccchHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYG-DS--TCGQRALYQIGMT---GIPVFNVNNNCSTGSSALMLAK 79 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~-~~--~~~~~~a~~lg~~---~~~~~~i~~~C~sg~~al~~A~ 79 (110)
+.++...|++.|++.+|++.++++++|+.+++|+=++ |. .....+.+.||+. .+..+++.++|-+|+.||..|.
T Consensus 49 ~~ED~vTmA~nAa~~ll~~~~id~~~Ig~l~vgTES~vD~sKs~~t~v~~ll~~s~~~~~~~~e~k~ACygGTaAL~~a~ 128 (174)
T PF01154_consen 49 PDEDIVTMAANAAKPLLDRYNIDPDDIGRLIVGTESGVDKSKSISTYVHQLLGLSGNPDCRGVEMKQACYGGTAALQNAV 128 (174)
T ss_dssp TTS-HHHHHHHHHHTTHHHHT-HHHHEEEEEEE-SS-SBSSS-HHHHHHHHTTTTT-SSSEEEEEESGGGHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHcCCCHHHccEEEEeccccccccccHHHHHHHHhCcCCCCceeeeehhhhhHHHHHHHHHHH
Confidence 5789999999999999999999999999999997543 22 2334677889983 3456888999999999999999
Q ss_pred HHHHcC-CC--eEEEEeeccC
Q psy13271 80 QFIESG-SD--CTLALGFEKM 97 (110)
Q Consensus 80 ~~i~sG-~~--~vlv~g~e~~ 97 (110)
++|+++ .+ ++||+++|.-
T Consensus 129 ~~v~s~~~~g~~aLVVasDiA 149 (174)
T PF01154_consen 129 NWVASSPWDGRKALVVASDIA 149 (174)
T ss_dssp HHHCSTTSTTEEEEEEEEEEE
T ss_pred HHHhcCCCCCCeEEEEecccc
Confidence 999998 64 9999999964
No 118
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=99.12 E-value=7.3e-10 Score=81.27 Aligned_cols=86 Identities=23% Similarity=0.248 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHcCCCccccC----eEEEEeecCCCc-----------------------------chhHHHHHcCC
Q psy13271 10 YPELAKEALIKALDDAGISINQVQ----QACCGYVYGDST-----------------------------CGQRALYQIGM 56 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id----~vi~~~~~~~~~-----------------------------~~~~~a~~lg~ 56 (110)
...|+..++++||+++|+++++++ +|++++..+... ....++..+|+
T Consensus 71 ~~~~~l~aa~eAl~dAGl~~~~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 150 (399)
T cd00832 71 MTRLALAAADWALADAGVDPAALPPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGM 150 (399)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCCceEEEEccCCccHHHHHHHHHHHHhcCccccChhhhhhhhhhHHHHHHHHHhCC
Confidence 356889999999999999877654 677776543220 01245567899
Q ss_pred CCCCeeeEeccchHHHHHHHHHHHHHHcCCCeEEEEeecc
Q psy13271 57 TGIPVFNVNNNCSTGSSALMLAKQFIESGSDCTLALGFEK 96 (110)
Q Consensus 57 ~~~~~~~i~~~C~sg~~al~~A~~~i~sG~~~vlv~g~e~ 96 (110)
++ |++++.++|+|++.||..|+++|++|.|.+|++|+|.
T Consensus 151 ~G-p~~ti~~acaS~~~Al~~A~~~i~~G~d~~i~gg~d~ 189 (399)
T cd00832 151 RG-PSGVVVAEQAGGLDALAQARRLVRRGTPLVVSGGVDS 189 (399)
T ss_pred CC-CcccccchhHHHHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 87 9999999999999999999999999988999999987
No 119
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.09 E-value=1.3e-09 Score=80.48 Aligned_cols=47 Identities=23% Similarity=0.479 Sum_probs=43.2
Q ss_pred HHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeecc
Q psy13271 49 RALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEK 96 (110)
Q Consensus 49 ~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~ 96 (110)
.++..+|+++ ++++++++|+|+..||.+|+++|++| +|++||+|+|.
T Consensus 157 ~i~~~~gl~G-~~~~i~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~d~ 204 (425)
T PRK06501 157 RLADRFGTRG-LPISLSTACASGATAIQLGVEAIRRGETDRALCIATDG 204 (425)
T ss_pred HHHHHhCCCC-CceeecCccHHHHHHHHHHHHHHHcCCCCEEEEeeecc
Confidence 4567899976 88999999999999999999999999 99999999994
No 120
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.09 E-value=3.4e-10 Score=91.24 Aligned_cols=85 Identities=32% Similarity=0.452 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHcCCCccccC----eEEEEeecCCCc----------------------chhHHHHHcCCCCCCeeeEe
Q psy13271 12 ELAKEALIKALDDAGISINQVQ----QACCGYVYGDST----------------------CGQRALYQIGMTGIPVFNVN 65 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id----~vi~~~~~~~~~----------------------~~~~~a~~lg~~~~~~~~i~ 65 (110)
.|..+.++++|+++|++++.+. +|+.|....++. .+.+++..||+++ |.+.|+
T Consensus 93 RllLe~aw~AlEdAG~~~~~l~g~~tgV~~g~~~~~y~~~~~~~~~~~~~~~~~g~~~~~~a~Risy~l~l~G-Ps~~vd 171 (1061)
T COG3321 93 RLLLEVAWEALEDAGIYPDSLRGSATGVFAGASVADYLLLLLADDEAEPEYAITGNSSSVAAGRISYVLGLSG-PSVTVD 171 (1061)
T ss_pred hHHHHHHHHHHHHcCCCccccCCcceEEEEeeccCccccccccccccccceecccchhhHHHHHHHHHhcCCC-CCcccc
Confidence 3899999999999999999888 677776655442 1234677899997 999999
Q ss_pred ccchHHHHHHHHHHHHHHcC-CCeEEEEeeccC
Q psy13271 66 NNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97 (110)
Q Consensus 66 ~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~ 97 (110)
++|+|++.|+++|++.|++| +|.+|++|+..+
T Consensus 172 taCSSsLvAvhlA~~sL~~Ge~d~alaGgv~l~ 204 (1061)
T COG3321 172 TACSSSLVAVHLACQSLRLGECDLALAGGVNLV 204 (1061)
T ss_pred chhhHHHHHHHHHHHHHHcCCCCEEEecceEec
Confidence 99999999999999999999 999999999875
No 121
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.08 E-value=1.6e-09 Score=80.01 Aligned_cols=86 Identities=17% Similarity=0.182 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHcCCCccccC--eEEEEeecCCCc-----------------------------chhHHHHHcCCCCC
Q psy13271 11 PELAKEALIKALDDAGISINQVQ--QACCGYVYGDST-----------------------------CGQRALYQIGMTGI 59 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~~id--~vi~~~~~~~~~-----------------------------~~~~~a~~lg~~~~ 59 (110)
..++..++++||+++|++..+.+ ++++|+..+... ....++..+|+++
T Consensus 84 ~~~~l~aa~~AledAg~~~~~~~r~Gv~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~G- 162 (418)
T PRK07910 84 QRMSTVLGRRVWENAGSPEVDTNRLMVSIGTGLGSAEELVFAYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAKA- 162 (418)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcccEEEEEEEccCccHhHHHHHHHHHhcCcccCChhHHHHhccccHHHHHHHHhCCCC-
Confidence 44788899999999997432222 566776543210 0012345678886
Q ss_pred CeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeeccC
Q psy13271 60 PVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97 (110)
Q Consensus 60 ~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~ 97 (110)
|++++.++|+|++.||++|+++|++| +|.+|++|+|..
T Consensus 163 ~~~ti~taCaS~~~Al~~A~~~I~~G~~d~aivgg~~~~ 201 (418)
T PRK07910 163 GVITPVSACASGSEAIAQAWRQIVLGEADIAICGGVETR 201 (418)
T ss_pred CcccccchhHHHHHHHHHHHHHHHcCCCCEEEEcccccc
Confidence 89999999999999999999999999 999999999974
No 122
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.04 E-value=1.5e-09 Score=79.28 Aligned_cols=84 Identities=29% Similarity=0.378 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHcCCCcccc-CeEEEEeecCCC------------------------c----c----hhHHHHHcCCCC
Q psy13271 12 ELAKEALIKALDDAGISINQV-QQACCGYVYGDS------------------------T----C----GQRALYQIGMTG 58 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~i-d~vi~~~~~~~~------------------------~----~----~~~~a~~lg~~~ 58 (110)
.+...++++||+++|++++.- =++++|+..+.. . . ...++..+|+++
T Consensus 58 ~~~~~a~~~Al~dagl~~~~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~~~~~G 137 (381)
T PRK05952 58 DLTKTVVTAALKDAGLTPPLTDCGVVIGSSRGCQGQWEKLARQMYQGDDSPDEELDLENWLDTLPHQAAIAAARQIGTQG 137 (381)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCEEEEEeeCcchHHHHHHHHHHHhhcCCccccccCHHHHHHhcccHHHHHHHHHhCCCC
Confidence 466789999999999975321 267777754320 0 0 123456789987
Q ss_pred CCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeecc
Q psy13271 59 IPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEK 96 (110)
Q Consensus 59 ~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~ 96 (110)
|++++.++|+|++.||..|+++|++| +|.+||+|+|.
T Consensus 138 -p~~ti~~aCasg~~Ai~~A~~~i~~G~~d~~lvgg~d~ 175 (381)
T PRK05952 138 -PVLAPMAACATGLWAIAQGVELIQTGQCQRVIAGAVEA 175 (381)
T ss_pred -ccccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccc
Confidence 99999999999999999999999999 99999999996
No 123
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.04 E-value=1.6e-09 Score=76.35 Aligned_cols=89 Identities=19% Similarity=0.264 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch--hHHHHHcCCCC-CCeeeE-eccchHHHHHHHHHHHHHHcC
Q psy13271 10 YPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG--QRALYQIGMTG-IPVFNV-NNNCSTGSSALMLAKQFIESG 85 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~--~~~a~~lg~~~-~~~~~i-~~~C~sg~~al~~A~~~i~sG 85 (110)
...|.+++.++||+.+++.++|||.|++.++++-..++ .++...||+++ ..-+-+ ..||++|..++..|.++.++.
T Consensus 76 a~~l~v~a~r~aL~~~~l~pedId~vv~vtsTG~~~Ps~dari~~~Lgl~p~~~Rvpv~glGCaaga~glara~~y~ra~ 155 (356)
T COG3424 76 AVPLGVDALRRALDGSPLRPEDIDAVVTVTSTGLATPSLDARIVGELGLSPDTRRVPVWGLGCAAGAAGLARARDYCRAA 155 (356)
T ss_pred HHHHHHHHHHHHhccCCCCHHHCcEEEEEeeccccCCChhHHHHhhcCCCCccceeeeecchhhhhhhHHHHHHHHHhhC
Confidence 44589999999999999999999999999887654432 57889999964 233333 479999999999999999999
Q ss_pred -CCeEEEEeeccCC
Q psy13271 86 -SDCTLALGFEKME 98 (110)
Q Consensus 86 -~~~vlv~g~e~~s 98 (110)
..+||++.+|..|
T Consensus 156 P~~~vlvV~vELCS 169 (356)
T COG3424 156 PDANVLVVCVELCS 169 (356)
T ss_pred ccceEEEEEeeeee
Confidence 9999999999865
No 124
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.01 E-value=2.4e-09 Score=78.75 Aligned_cols=88 Identities=28% Similarity=0.428 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHHHcCCC-ccccC---eEEEEeecCCCc----------------------c--------hhHHHHH
Q psy13271 8 TDYPELAKEALIKALDDAGIS-INQVQ---QACCGYVYGDST----------------------C--------GQRALYQ 53 (110)
Q Consensus 8 ~~~~~l~~~a~~~al~~agl~-~~~id---~vi~~~~~~~~~----------------------~--------~~~~a~~ 53 (110)
.+...++..|+.+||+++|++ ..+.+ ++++|+..++.. . ...++..
T Consensus 69 d~~~~~a~~Aa~eAl~dAgl~~~~~~~~r~gv~iGsg~gg~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~vs~~ 148 (412)
T COG0304 69 DRFSQLAVVAAVEALEDAGLDNELNVDMRVGVAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIV 148 (412)
T ss_pred cHHHHHHHHHHHHHHHHcCCCcccccCccEEEEEeccCCCcchhhhHHHHHHhcCCccCcCchhhhhhccchHHHHHHHH
Confidence 356679999999999999997 33342 456666543321 0 0134567
Q ss_pred cCCCCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeecc
Q psy13271 54 IGMTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEK 96 (110)
Q Consensus 54 lg~~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~ 96 (110)
+|+++ +.+++.++|+++.++|..|+++|+.| +|++|++|+|.
T Consensus 149 ~g~~G-~~~~~~tACatg~~AIg~A~~~I~~G~ad~~iaGG~e~ 191 (412)
T COG0304 149 FGLKG-PNYTPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEA 191 (412)
T ss_pred hCCCC-CcCChhhhHHhHHHHHHHHHHHHHcCCCCEEEEccccc
Confidence 89987 89999999999999999999999999 99999999976
No 125
>KOG1389|consensus
Probab=99.01 E-value=1.6e-09 Score=76.71 Aligned_cols=95 Identities=26% Similarity=0.371 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcc--hhHHH-HHcCCC-CCCeeeEeccchHHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTC--GQRAL-YQIGMT-GIPVFNVNNNCSTGSSALMLAKQF 81 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~--~~~~a-~~lg~~-~~~~~~i~~~C~sg~~al~~A~~~ 81 (110)
++..+-+|...+.+..+++.+++|+.|.-|++|+....... ..+++ -+.|++ .+|..+++..|+||++++..-+..
T Consensus 57 kdt~pDeLl~~vl~a~ie~t~~dp~~igdi~vG~vL~pg~ga~e~R~a~~~ag~P~tvpv~tvNRqCsSGLqaVadiA~~ 136 (435)
T KOG1389|consen 57 KDTRPDELLAAVLRAVIEKTNLDPSLIGDIVVGTVLAPGSGASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADIAAK 136 (435)
T ss_pred ccCChHHHHHHHHHHHHhhcCCCHHHhcceeeeeccCCCcchHHHHHHHHHcCCCcccchhhhhhhhhhHHHHHHHHHHH
Confidence 68889999999999999999999999999999998654322 12333 356774 578889999999999999999999
Q ss_pred HHcC-CCeEEEEeeccCCCC
Q psy13271 82 IESG-SDCTLALGFEKMEKG 100 (110)
Q Consensus 82 i~sG-~~~vlv~g~e~~s~~ 100 (110)
|++| +|.-|..|.|.|+..
T Consensus 137 Ir~G~ydIGla~GvESMt~~ 156 (435)
T KOG1389|consen 137 IRAGFYDIGLAAGVESMTTN 156 (435)
T ss_pred HhcCceeeecccchhhhccc
Confidence 9999 999999999999876
No 126
>KOG1392|consensus
Probab=98.98 E-value=4.4e-10 Score=78.95 Aligned_cols=99 Identities=23% Similarity=0.337 Sum_probs=84.3
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHH----HcCCC-CCCeeeEeccchHHHHHHHHHHH
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALY----QIGMT-GIPVFNVNNNCSTGSSALMLAKQ 80 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~----~lg~~-~~~~~~i~~~C~sg~~al~~A~~ 80 (110)
+++-+.+|+.++...+|++..++.+.+|.||+|+..++.- ..++++ ..|+. ..|..++..+|-|...|+..+..
T Consensus 62 kdlmphdlar~al~~ll~kt~lpke~~dyii~gtviqevk-tsniareaal~agfsdktpahtvtmacissn~amttgmg 140 (465)
T KOG1392|consen 62 KDLMPHDLAREALKALLEKTKLPKEQLDYIICGTVIQEVK-TSNIAREAALLAGFSDKTPAHTVTMACISSNVAMTTGMG 140 (465)
T ss_pred hhhchhHHHHHHHHHHHHhccCCHHHhceeeehhhHHHHh-cchHHHHHHHhcCCCCCCccceeeeehhccchhhhccce
Confidence 5678889999999999999999999999999998865432 123333 35674 36899999999999999999999
Q ss_pred HHHcC-CCeEEEEeeccCCCCCCCCC
Q psy13271 81 FIESG-SDCTLALGFEKMEKGSLGAK 105 (110)
Q Consensus 81 ~i~sG-~~~vlv~g~e~~s~~~~~~~ 105 (110)
+|++| +|+++.+|+|.||+.|.-.+
T Consensus 141 liatg~~dvivaggvelmsdvpirhs 166 (465)
T KOG1392|consen 141 LIATGNADVIVAGGVELMSDVPIRHS 166 (465)
T ss_pred eEeeCCcCEEEEcceeecccCchhhh
Confidence 99999 99999999999999997554
No 127
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.97 E-value=4e-09 Score=90.58 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=43.9
Q ss_pred HHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeecc
Q psy13271 49 RALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEK 96 (110)
Q Consensus 49 ~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~ 96 (110)
+++..||+++ |+++|+++|+|++.||+.|++.|++| +|.+|++|++.
T Consensus 188 RIS~~f~L~G-ps~tVdtACsSSL~Al~~A~~~L~~G~~D~alvGGv~~ 235 (2582)
T TIGR02813 188 RIANRFDLGG-MNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCT 235 (2582)
T ss_pred HHHHHhCCCC-CcccccchhHHHHHHHHHHHHHHHcCCCCEEEEeccee
Confidence 4667899987 99999999999999999999999999 99999999886
No 128
>KOG1394|consensus
Probab=98.96 E-value=1.1e-09 Score=78.48 Aligned_cols=87 Identities=31% Similarity=0.394 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHHHcCCCcc---ccC----eEEEEeecCCCc---------------------ch--------hHHHH
Q psy13271 9 DYPELAKEALIKALDDAGISIN---QVQ----QACCGYVYGDST---------------------CG--------QRALY 52 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~~~---~id----~vi~~~~~~~~~---------------------~~--------~~~a~ 52 (110)
++..|++.|+.+||+++++.+. +.| +|.+|+.+++.. .| ..++.
T Consensus 93 ~~~~~al~aa~eAL~da~~~~~~~~e~dk~~~GV~iGtgmg~l~~i~e~a~~~~~~g~rrvsPffVPkil~NM~ag~vsm 172 (440)
T KOG1394|consen 93 KFTKLALTAAEEALKDAGLLDVNLSEEDKEKTGVLIGTGMGDLEDIYETAQNLSEKGYRRVSPFFVPKILTNMAAGYVSM 172 (440)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccchhhhhhhceEeccccccHHHHHHHHHHHHHhcccccCccccchhhcccccchhhh
Confidence 5667999999999999998765 233 788888776521 11 23556
Q ss_pred HcCCCCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeecc
Q psy13271 53 QIGMTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEK 96 (110)
Q Consensus 53 ~lg~~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~ 96 (110)
.+|+++ |..+++++|++|.++|..+.++|+.| +|+.|+++.|.
T Consensus 173 ~~gl~G-pnhsvSTACATg~h~igda~n~Ir~GdaDvmlAGgsE~ 216 (440)
T KOG1394|consen 173 KYGLRG-PNHSVSTACATGNHCIGDAFNFIRLGDADVMLAGGSEA 216 (440)
T ss_pred hhcCcC-CchhhHhhhhhccchHHHHHHHHHhCccceeeccCcce
Confidence 789987 99999999999999999999999999 99999999987
No 129
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=98.91 E-value=3e-08 Score=69.96 Aligned_cols=84 Identities=25% Similarity=0.395 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEE
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTL 90 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vl 90 (110)
.|..+|++.+|+++++.++|||.++.|-...+....+..++.|++ |-+-+-.+|++...+|.+|+.+|..| ++++|
T Consensus 53 ~m~~~A~~~al~Ka~l~~~dId~~~aGDLlnQ~i~s~f~ar~l~i---Pf~GlygACST~~e~l~laa~~vdgg~a~~vl 129 (329)
T PF07451_consen 53 KMQKEAVELALKKAGLKKEDIDYLFAGDLLNQIISSSFAARDLGI---PFLGLYGACSTMMESLALAAMLVDGGFADYVL 129 (329)
T ss_dssp HHHHHHHHHHHHHTT--GGG-SEEEEEETTCCCCHHHHHHHHHT-----EEEB--CCCHHHHHHHHHHHHHHTTS-SEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHCeEEEehhhhhhhHHHHHHHHhcCC---CccchhhHHHHHHHHHHHHHHHHhCCCcceEE
Confidence 489999999999999999999999999877776666677788865 77888899999999999999999999 99999
Q ss_pred EEeeccCC
Q psy13271 91 ALGFEKME 98 (110)
Q Consensus 91 v~g~e~~s 98 (110)
+..+....
T Consensus 130 a~tSSH~~ 137 (329)
T PF07451_consen 130 AATSSHFA 137 (329)
T ss_dssp EEEEE-CC
T ss_pred EEeccccc
Confidence 98865543
No 130
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=98.70 E-value=1.9e-07 Score=68.39 Aligned_cols=50 Identities=20% Similarity=0.551 Sum_probs=45.0
Q ss_pred HHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeeccCCC
Q psy13271 49 RALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKMEK 99 (110)
Q Consensus 49 ~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~s~ 99 (110)
.++..+|+++ |.+++.++|+|++.||..|+++|++| +|++||+++|.+++
T Consensus 142 ~ia~~lgl~G-p~~~i~~acas~~~Al~~A~~~I~~G~~d~vlvgg~d~~~~ 192 (392)
T PRK09185 142 FLRAYLGLSG-PAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDSLCR 192 (392)
T ss_pred HHHHHhCCCC-CcccccChhHHHHHHHHHHHHHHHcCCCCEEEEeeccccCh
Confidence 3567899987 99999999999999999999999999 99999999997543
No 131
>PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways. The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. Acyl-[ACP] + malonyl-[ACP] = 3-oxoacyl-[ACP] + CO(2) + [ACP] The oxoacyl-ACP formed by this reaction subsequently enters the elongation cycle, where the acyl chain is progressively lengthened by the combined activities of several enzymes. The enzymes studied so far are homodimers, where each monomer consists of two domains (N-terminal and C-terminal) which are similar in structure, but not in sequence [, ]. This entry represents a conserved region within the N-terminal domain.; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process; PDB: 1ZOW_C 1UB7_B 3IL7_A 3IL3_A 2X3E_B 4DFE_C 3LED_B 3ROW_B 3S23_A 3S1Z_A ....
Probab=98.64 E-value=8.2e-08 Score=55.53 Aligned_cols=39 Identities=28% Similarity=0.470 Sum_probs=35.1
Q ss_pred eeEeccchHHHHHHHHHHHHHHcC-CCeEEEEeeccCCCC
Q psy13271 62 FNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKMEKG 100 (110)
Q Consensus 62 ~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~s~~ 100 (110)
|+++++|++++.+|+.|..+|++| ++++||+++|..++.
T Consensus 1 fDi~~~C~g~~~al~~A~~~i~~g~~~~~Lvv~~d~~s~~ 40 (80)
T PF08545_consen 1 FDINQACAGFLYALDVAAALIASGRAKNALVVGGDRLSRI 40 (80)
T ss_dssp EEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGG
T ss_pred CcccccchHHHHHHHHHHHHHhhccCCEEEEEeecccccc
Confidence 689999999999999999999999 999999999998873
No 132
>KOG1202|consensus
Probab=98.53 E-value=9.5e-08 Score=77.28 Aligned_cols=88 Identities=30% Similarity=0.410 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHHHcCCCccccC----eEEEEeecCCCc----------------------chhHHHHHcCCCCCCee
Q psy13271 9 DYPELAKEALIKALDDAGISINQVQ----QACCGYVYGDST----------------------CGQRALYQIGMTGIPVF 62 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~~~~id----~vi~~~~~~~~~----------------------~~~~~a~~lg~~~~~~~ 62 (110)
+...|..++.++|+-|+||.|.++. +++++.+.++.. ..++++..+.+++ |.+
T Consensus 86 Pq~RlLLE~t~EAivDaGiNP~~LRGs~tGv~vg~s~seTs~~~~~dp~t~~Gy~mtgc~raMfaNRiSytFDfqG-PS~ 164 (2376)
T KOG1202|consen 86 PQLRLLLEATWEAIVDAGINPDDLRGSRTGVFVGVSGSETSGALSQDPDTVNGYSMTGCVRAMFANRISYTFDFQG-PSF 164 (2376)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCcccceeEEeecCccccccccCCCccccceeecccHHHHhhcceeEEEeccC-Cch
Confidence 3446999999999999999999987 566665543211 0122333467876 999
Q ss_pred eEeccchHHHHHHHHHHHHHHcC-CCeEEEEeeccC
Q psy13271 63 NVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97 (110)
Q Consensus 63 ~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g~e~~ 97 (110)
.++++|+|...++..|++.+++| +|.+||.|+...
T Consensus 165 s~DtacsSsl~al~~a~~~~r~gqcd~AiVaG~~li 200 (2376)
T KOG1202|consen 165 SVDTACSSSLMALQNAFQDIRSGQCDAAIVAGANLI 200 (2376)
T ss_pred hhhhhhHHHHHHHHHHHHhhhccCCchhhhcccceE
Confidence 99999999999999999999999 999999998764
No 133
>PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain
Probab=97.26 E-value=0.0063 Score=41.62 Aligned_cols=91 Identities=16% Similarity=0.112 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcc---------------h--------hHHHH----HcCCCCCCe
Q psy13271 9 DYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTC---------------G--------QRALY----QIGMTGIPV 61 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~---------------~--------~~~a~----~lg~~~~~~ 61 (110)
....|+++++.+++++. .++|.+|+++..|+... | +.++. ..+.+ .+.
T Consensus 33 ~~~rla~~~a~~~~~~~----~~~d~~VfaS~~Gel~~t~~ll~~l~~~~~lSPT~Fs~SVHNA~aG~~sI~~~~~-~~~ 107 (218)
T PF13723_consen 33 RLSRLALEAALECLAED----EQPDAIVFASRHGELERTFKLLEALAEEEELSPTAFSQSVHNAAAGYWSIATKNT-GPN 107 (218)
T ss_pred HHHHHHHHHHHHHHhcc----CCCCcEEEEeCCCcHHHHHHHHHHHHhCCCcCccchhhhhhhHHHHHHHHHhCCC-Cce
Confidence 34568888888877542 56789999988776420 0 11222 33444 488
Q ss_pred eeEeccchHHHHHHHHHHHHHHcCCCeEEEEeeccCCCCCCCC
Q psy13271 62 FNVNNNCSTGSSALMLAKQFIESGSDCTLALGFEKMEKGSLGA 104 (110)
Q Consensus 62 ~~i~~~C~sg~~al~~A~~~i~sG~~~vlv~g~e~~s~~~~~~ 104 (110)
.++..+-.++..||..|..++..|.+.||++.+|.....++..
T Consensus 108 tal~a~~~sf~~aLleA~~~l~~~~~~VLlv~~De~~p~~y~~ 150 (218)
T PF13723_consen 108 TALAAGEDSFEAALLEAAAQLAEGAEPVLLVCYDEPLPEPYQE 150 (218)
T ss_pred EEEecCcchHHHHHHHHHHHHHcCCCCEEEEEeCCCCChhhhh
Confidence 8999999999999999999999998888888888866555443
No 134
>KOG1393|consensus
Probab=97.01 E-value=0.004 Score=45.71 Aligned_cols=90 Identities=19% Similarity=0.233 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCccccCeEEEEeec-CCCc--chhHHHHHc---CCCCCCeeeEeccchHHHHHHHHHHH
Q psy13271 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVY-GDST--CGQRALYQI---GMTGIPVFNVNNNCSTGSSALMLAKQ 80 (110)
Q Consensus 7 ~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~-~~~~--~~~~~a~~l---g~~~~~~~~i~~~C~sg~~al~~A~~ 80 (110)
.++...|...++.+++++-+++++.|..+-+|+-+ .|.. .-..+...+ |-.++..++..++|=+|..||-.|.+
T Consensus 57 rEDi~Sl~ltvvs~Lmery~i~~~~IGRLEVGTETiiDKSKSVKt~LMqLF~~sgNtdIEGiDttnACYGGtaALfnavn 136 (462)
T KOG1393|consen 57 REDIISLSLTVVSRLMERYNIDPDSIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDIEGIDTTNACYGGTAALFNAVN 136 (462)
T ss_pred hhhhhhhhHHHHHHHHHHhCCChhhcceEEecceeccccchHHHHHHHHHhhhcCCCccccccccccccccHHHHHHHhh
Confidence 35677899999999999999999999999998742 2221 112334444 44567788889999999999999999
Q ss_pred HHHcC---CCeEEEEeecc
Q psy13271 81 FIESG---SDCTLALGFEK 96 (110)
Q Consensus 81 ~i~sG---~~~vlv~g~e~ 96 (110)
.|.+. -+.+||+.+|.
T Consensus 137 WiESssWDGr~aivV~gDI 155 (462)
T KOG1393|consen 137 WIESSSWDGRYAIVVCGDI 155 (462)
T ss_pred hhhhcccCCceeEEEEeeE
Confidence 99988 67888888774
No 135
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=95.99 E-value=0.022 Score=33.11 Aligned_cols=71 Identities=20% Similarity=0.166 Sum_probs=41.1
Q ss_pred HHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCC-CCeeeE----eccchHHHHHHHHHHH--HHHcCCCeEEEEee
Q psy13271 22 LDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTG-IPVFNV----NNNCSTGSSALMLAKQ--FIESGSDCTLALGF 94 (110)
Q Consensus 22 l~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~-~~~~~i----~~~C~sg~~al~~A~~--~i~sG~~~vlv~g~ 94 (110)
|+++|++++|||.++...... ..-..+++.+|++. .....+ +.+|++-..++..+.+ .++. -|.+++++.
T Consensus 1 L~~~g~~~~did~~i~hq~~~--~~~~~~~~~lgi~~~~~~~~~~~~Gn~~sa~~~~~L~~~~~~g~~~~-Gd~vl~~~~ 77 (90)
T PF08541_consen 1 LERAGLSPDDIDHFIPHQASK--KILDSIAKRLGIPPERFPDNLAEYGNTGSASIPINLADALEEGRIKP-GDRVLLVGF 77 (90)
T ss_dssp HHHTT--GGGESEEEE-SSSH--HHHHHHHHHHTS-GGGBE-THHHH-B-GGGHHHHHHHHHHHTTSSCT-TEEEEEEEE
T ss_pred CccccCCHHHCCEEEeCCCCH--HHHHHHHHHcCCcHHHHHHHHhccCcchhhhHHHHHHHHHHcCCCCC-CCEEEEEEE
Confidence 689999999999999754321 12234677888853 111122 4577777777776666 3333 367777765
Q ss_pred c
Q psy13271 95 E 95 (110)
Q Consensus 95 e 95 (110)
-
T Consensus 78 G 78 (90)
T PF08541_consen 78 G 78 (90)
T ss_dssp E
T ss_pred E
Confidence 4
No 136
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated
Probab=95.60 E-value=0.072 Score=38.70 Aligned_cols=85 Identities=12% Similarity=0.109 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEEeecCCCc---chhHHHHHcCC--CCCCeee----E-eccchHHHHHHHHHHHH
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDST---CGQRALYQIGM--TGIPVFN----V-NNNCSTGSSALMLAKQF 81 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~---~~~~~a~~lg~--~~~~~~~----i-~~~C~sg~~al~~A~~~ 81 (110)
+-..++++++|+++|+++++||.|+.......+. ....+.+.++- ...+... + +.+.++|...+..+...
T Consensus 234 ~gl~~ai~~AL~~agl~~~dId~v~ah~~gt~~~d~~e~~A~~~~f~~~~~~~~~~~~k~~~Gh~~aAaG~~~~~~a~~~ 313 (348)
T PRK06147 234 DGLTQAIRAALAEAGCGLEDMDYRIADLNGEQYRFKEAALAEMRLFRVRKEFFDLWHPAECIGEIGAAIGPALLGVALAA 313 (348)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEcCCCCCccchHHHHHHHHHHhhhccCCCceecchHhhcchHHHHHHHHHHHHHHH
Confidence 4456889999999999999999987532211111 12233344442 1223222 2 34666777777778888
Q ss_pred HHcC---CCeEEEEeecc
Q psy13271 82 IESG---SDCTLALGFEK 96 (110)
Q Consensus 82 i~sG---~~~vlv~g~e~ 96 (110)
++.| .+++|+.+.+-
T Consensus 314 ~~~g~~~g~~~L~~s~~d 331 (348)
T PRK06147 314 SRKGYGPGPNVLCHLSDD 331 (348)
T ss_pred HHcCcCCCCcEEEEecCC
Confidence 8898 36688877654
No 137
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.
Probab=95.27 E-value=0.077 Score=38.46 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCC--CC-ee---eE-eccchHHHHHHHHHHHHH
Q psy13271 10 YPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTG--IP-VF---NV-NNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~--~~-~~---~i-~~~C~sg~~al~~A~~~i 82 (110)
....+.++++++|+++|++++|||.+++-.... .....+.+.+|+.. .+ .+ .+ ++++++--.+|..+...+
T Consensus 206 ~~~~~~~~~~~~L~~~gl~~~did~~i~Hq~~~--~~~~~~~~~lgl~~ek~~~~~~~~~~GNt~sAsipl~L~~~~~~~ 283 (345)
T TIGR00748 206 YFHHVVTAAKGLMEKLGLTPEDFDYAVFHQPNG--KFYLVAARMLGFPKEQVKPGLLTPRIGNTYSGATPVGLSAVLDIA 283 (345)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcCEEEeCCCCh--HHHHHHHHHcCCCHHHeeccccccccCchhhhHHHHHHHHHHHhc
Confidence 345566888999999999999999998743321 13345677888752 11 11 23 456777777777776655
Q ss_pred HcCCCeEEEEeec
Q psy13271 83 ESGSDCTLALGFE 95 (110)
Q Consensus 83 ~sG~~~vlv~g~e 95 (110)
+.| |.+++++.-
T Consensus 284 ~~G-d~vll~~~G 295 (345)
T TIGR00748 284 EPG-DRILAVSYG 295 (345)
T ss_pred CCC-CEEEEEEec
Confidence 555 667766643
No 138
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=95.26 E-value=0.044 Score=33.62 Aligned_cols=74 Identities=23% Similarity=0.197 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcch---hHHHHHcCCC----CCCeeeE-----eccchHHHHHHHHHH
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG---QRALYQIGMT----GIPVFNV-----NNNCSTGSSALMLAK 79 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~---~~~a~~lg~~----~~~~~~i-----~~~C~sg~~al~~A~ 79 (110)
+-..++++++|++++++++|||.|............ ..+.+.++-. +++...+ ....++|+..+..+.
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~~~~~~~~v~s~K~~~Gh~~~asG~~~l~~~~ 104 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDSARQQPVPVGSVKSNIGHTEAASGLLSLAKAL 104 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGGGGGTSTSEEE-THHHH-B-GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcccccccccceeccccccccccccchHHHHHHHH
Confidence 344778999999999999999998754321111111 1233334322 1232222 357788998998888
Q ss_pred HHHHcC
Q psy13271 80 QFIESG 85 (110)
Q Consensus 80 ~~i~sG 85 (110)
..++.|
T Consensus 105 l~l~~~ 110 (119)
T PF02801_consen 105 LALEHG 110 (119)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 888877
No 139
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=94.64 E-value=0.28 Score=35.96 Aligned_cols=80 Identities=11% Similarity=0.056 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHc-----CCCC-CCeeeE----eccchHHHHHHHHHHH--H
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQI-----GMTG-IPVFNV----NNNCSTGSSALMLAKQ--F 81 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~l-----g~~~-~~~~~i----~~~C~sg~~al~~A~~--~ 81 (110)
..+.++++|+++|+.++|||.++.-.... ..-..+++.| |+.. .....+ +++|++--.+|+.+.. .
T Consensus 274 ~~~~i~~~L~~~gl~~~DId~~v~Hq~n~--~~~~~v~~~l~~~~~gl~~~k~~~~~~~~GNt~sAsipi~L~~a~~~g~ 351 (378)
T PRK06816 274 TIKPLLELVDKRNLDPDDIDYFLPHYSSE--YFREKIVELLAKAGFMIPEEKWFTNLATVGNTGSASIYIMLDELLNSGR 351 (378)
T ss_pred HHHHHHHHHHHcCCChhhCCEEeeCcccH--HHHHHHHHHHHhccCCCChhheEEeccccccccchHHHHHHHHHHHcCC
Confidence 36677889999999999999988643321 1223455655 6642 222233 4667777777766644 3
Q ss_pred HHcCCCeEEEEeecc
Q psy13271 82 IESGSDCTLALGFEK 96 (110)
Q Consensus 82 i~sG~~~vlv~g~e~ 96 (110)
++.| |.+++.+.+.
T Consensus 352 ~~~G-d~vl~~~~~s 365 (378)
T PRK06816 352 LKPG-QKILCFVPES 365 (378)
T ss_pred CCCC-CEEEEEEecc
Confidence 3334 6777776554
No 140
>PRK08257 acetyl-CoA acetyltransferase; Validated
Probab=94.11 E-value=0.33 Score=37.10 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCCC---Ceee-------EeccchHHHHHHHHHHHHH
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGI---PVFN-------VNNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~~---~~~~-------i~~~C~sg~~al~~A~~~i 82 (110)
....+++++++++|++++|||.+=+-.+++- ......+.||+... |... =....++|++.+..+...+
T Consensus 293 ~~~~aa~~a~~~AGi~~~Did~~elydcF~~--~~~~~~E~LGl~~~g~~pvN~sGGl~s~G~P~~a~g~~~i~E~v~QL 370 (498)
T PRK08257 293 AIRAAGRRALALAGLGIDDIDAFDLYSCFPS--AVQVAARELGLDLDDPRPLTVTGGLPFFGGPGNNYVTHAIAEMVERL 370 (498)
T ss_pred HHHHHHHHHHHHhCCCHHHCCEEEeccCCHH--HHHHHHHHcCcCCCCCCCcCCCcChhhcCCchhhHHHHHHHHHHHHH
Confidence 3456899999999999999998865443321 11223356777421 2211 1233455777888888888
Q ss_pred HcC-CCeEEEEe
Q psy13271 83 ESG-SDCTLALG 93 (110)
Q Consensus 83 ~sG-~~~vlv~g 93 (110)
+.. .++.|+.+
T Consensus 371 Rg~~~~~gLv~~ 382 (498)
T PRK08257 371 RANPGRRGLVTA 382 (498)
T ss_pred hhcCCCEEEEEC
Confidence 876 77777765
No 141
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=93.99 E-value=0.25 Score=36.59 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHcCCCccccCeEEEEe-ecC--CCcchhHHHHHcCCCCCCeeeE-----eccchHHHHHHHHHHHHH
Q psy13271 11 PELAKEALIKALDDAGISINQVQQACCGY-VYG--DSTCGQRALYQIGMTGIPVFNV-----NNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~~id~vi~~~-~~~--~~~~~~~~a~~lg~~~~~~~~i-----~~~C~sg~~al~~A~~~i 82 (110)
.+-..++++++|+++|+++++||.|.... .++ |......+.+.+|-...|...+ ...+++|...+..+...+
T Consensus 269 ~~~~~~a~~~al~~ag~~~~~i~~v~~hgtgt~~~D~~E~~al~~~fg~~~~pv~s~K~~~Gh~~~aaG~~~l~~~~l~l 348 (399)
T cd00832 269 PPGLARAIRLALADAGLTPEDVDVVFADAAGVPELDRAEAAALAAVFGPRGVPVTAPKTMTGRLYAGGAPLDVATALLAL 348 (399)
T ss_pred HHHHHHHHHHHHHHcCCCHHHccEEEeccCcCCCCCHHHHHHHHHHhCCCCCceeCCCchhcchHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999876532 222 1111223445566433333222 345677777787788888
Q ss_pred HcC
Q psy13271 83 ESG 85 (110)
Q Consensus 83 ~sG 85 (110)
+.|
T Consensus 349 ~~~ 351 (399)
T cd00832 349 RDG 351 (399)
T ss_pred hCC
Confidence 888
No 142
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=93.98 E-value=0.24 Score=35.51 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCC-CCeeeE----eccchHHHHHHHHHHHH--HHc
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTG-IPVFNV----NNNCSTGSSALMLAKQF--IES 84 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~-~~~~~i----~~~C~sg~~al~~A~~~--i~s 84 (110)
....++++++|+++|++++|||.+++.... ...-..+.+.+|+.. .....+ +.++++-..+|+.+.+. ++.
T Consensus 239 ~~~~~~~~~~L~~~g~~~~did~~i~H~~~--~~~~~~~~~~lgl~~~k~~~~~~~~GN~~sas~~~~L~~~~~~g~~~~ 316 (338)
T PRK09258 239 ELAVDTWEAFLAQLGWAVEQVDRVICHQVG--AAHTRAILKALGIDPEKVFTTFPTLGNMGPASLPITLAMAAEEGFLKP 316 (338)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEecCCCC--HHHHHHHHHHhCCCHHHceehHhhhCCcHHhHHHHHHHHHHHhCCCCC
Confidence 344567888999999999999998874422 112345677888852 112222 34455555555554433 333
Q ss_pred CCCeEEEEeecc
Q psy13271 85 GSDCTLALGFEK 96 (110)
Q Consensus 85 G~~~vlv~g~e~ 96 (110)
| |.+++++...
T Consensus 317 G-d~vll~~~G~ 327 (338)
T PRK09258 317 G-DRVALLGIGS 327 (338)
T ss_pred C-CEEEEEEech
Confidence 3 6677776543
No 143
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=93.88 E-value=0.31 Score=35.59 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHH-cCCCC---CCeeeE----eccchHHHHHHHHHHHHHHc
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQ-IGMTG---IPVFNV----NNNCSTGSSALMLAKQFIES 84 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~-lg~~~---~~~~~i----~~~C~sg~~al~~A~~~i~s 84 (110)
...++++++|+++|++++|||.++.-.... .....+.+. ||+.. .....+ +++|++-..++..+...++.
T Consensus 272 ~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~--~~~d~~~~~llg~~~~~~~~~~~~~~~GNt~sasi~~~L~~~~~~~~~ 349 (372)
T PRK07515 272 MVAEHIVEHLAENGLTPADVKRFWLHQANI--NMNQLIGKKVLGRDATPEEAPVILDEYANTSSAGSIIAFHKHSDDLAA 349 (372)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEECCCCH--HHHHHHHHHhccCCCChhhceEeHHhcCCchhhHHHHHHHHHhccCCC
Confidence 467889999999999999999998743211 112233444 56521 111222 46677777777766555544
Q ss_pred CCCeEEEEee
Q psy13271 85 GSDCTLALGF 94 (110)
Q Consensus 85 G~~~vlv~g~ 94 (110)
| |.++.++.
T Consensus 350 G-d~vll~~~ 358 (372)
T PRK07515 350 G-DLGVICSF 358 (372)
T ss_pred C-CEEEEEEe
Confidence 4 66666654
No 144
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=93.59 E-value=0.37 Score=34.37 Aligned_cols=78 Identities=13% Similarity=0.068 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCC-CCeeeE----eccchHHHHHHHHHHHHHHcC--
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTG-IPVFNV----NNNCSTGSSALMLAKQFIESG-- 85 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~-~~~~~i----~~~C~sg~~al~~A~~~i~sG-- 85 (110)
...++++++|+++|++++|||.++.-.. .......+.+.+|+.. .....+ +.++++-..+|.. +++.|
T Consensus 228 ~~~~~~~~~L~~~gl~~~did~~~~h~~--~~~~~~~~~~~l~l~~~k~~~~l~~~Gn~~sas~~~~L~~---~~~~~~~ 302 (326)
T PRK05963 228 MMSGASQNVLASAAMTPQDIDRFFPHQA--NARIVDKVCETIGIPRAKAASTLETYGNSSAATIPLSLSL---ANLEQPL 302 (326)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEeCCC--CHHHHHHHHHHcCCCHHHhhhhHHhhCcHHHHHHHHHHHH---HHHhCCC
Confidence 4456788999999999999999887332 2222345667788842 111222 2233333334433 33333
Q ss_pred --CCeEEEEeec
Q psy13271 86 --SDCTLALGFE 95 (110)
Q Consensus 86 --~~~vlv~g~e 95 (110)
-|.+|+++.-
T Consensus 303 ~~Gd~vll~~~G 314 (326)
T PRK05963 303 REGERLLFAAAG 314 (326)
T ss_pred CCCCEEEEEEEe
Confidence 3677777653
No 145
>PRK04262 hypothetical protein; Provisional
Probab=93.28 E-value=0.31 Score=35.28 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCC--CCe-e---eE-eccchHHHHHHHHHHHHHHc
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTG--IPV-F---NV-NNNCSTGSSALMLAKQFIES 84 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~--~~~-~---~i-~~~C~sg~~al~~A~~~i~s 84 (110)
....++++++|+++|++++|||.+++-.. .......+.+.||+.. .+. . .+ +.++++-..+|..+...++.
T Consensus 209 ~~~~~~i~~~L~~~gl~~~dId~~v~Hq~--n~~~~~~~~~~Lgl~~ek~~~~~~~~~~GNt~sAsi~~~L~~~~~~~~~ 286 (347)
T PRK04262 209 KHIISAAKGLMEKLGLKPSDYDYAVFHQP--NGKFPLRVAKMLGFTKEQVKPGLLTPYIGNTYSGSALLGLAAVLDVAKP 286 (347)
T ss_pred HHHHHHHHHHHHHhCcCHHHhceeecCCC--chHHHHHHHHHcCCCHHHhhccchhhhhCChHHHHHHHHHHHHHHhCCC
Confidence 46678889999999999999999887432 2223345677888852 111 1 22 34555666666666554333
Q ss_pred CCCeEEEEee
Q psy13271 85 GSDCTLALGF 94 (110)
Q Consensus 85 G~~~vlv~g~ 94 (110)
-|.+|.++.
T Consensus 287 -Gd~vll~~~ 295 (347)
T PRK04262 287 -GDRILVVSF 295 (347)
T ss_pred -CCEEEEEec
Confidence 467776664
No 146
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=93.27 E-value=0.34 Score=35.41 Aligned_cols=77 Identities=19% Similarity=0.153 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEEee-cC--CCcchhHHHHHcCCC--CCCeeeE-----eccchHHHHHHHHHHHH
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCGYV-YG--DSTCGQRALYQIGMT--GIPVFNV-----NNNCSTGSSALMLAKQF 81 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~~~-~~--~~~~~~~~a~~lg~~--~~~~~~i-----~~~C~sg~~al~~A~~~ 81 (110)
+-..++++++|++++++++|||.+..... ++ +......+...++-. ..+.... +..+++|+..+..+...
T Consensus 275 ~~~~~~i~~al~~agi~~~dId~v~~h~tgt~~~d~~E~~al~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~ 354 (406)
T cd00834 275 EGAARAMRAALADAGLSPEDIDYINAHGTSTPLNDAAESKAIKRVFGEHAKKVPVSSTKSMTGHLLGAAGAVEAIATLLA 354 (406)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEecccccCccccHHHHHHHHHHhcccCCCCceeCcchhhccchhhhhHHHHHHHHHH
Confidence 44567889999999999999998875432 21 111112333444431 2232221 35788999999999999
Q ss_pred HHcC-CCe
Q psy13271 82 IESG-SDC 88 (110)
Q Consensus 82 i~sG-~~~ 88 (110)
++.| .--
T Consensus 355 l~~~~ip~ 362 (406)
T cd00834 355 LRDGVLPP 362 (406)
T ss_pred HhcCCcCC
Confidence 9999 443
No 147
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=93.25 E-value=0.33 Score=35.82 Aligned_cols=73 Identities=11% Similarity=0.112 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEE-EeecC--CCcchhHHHHHcCCCCCCeeeE-----eccchHHHHHHHHHHHHHH
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACC-GYVYG--DSTCGQRALYQIGMTGIPVFNV-----NNNCSTGSSALMLAKQFIE 83 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~-~~~~~--~~~~~~~~a~~lg~~~~~~~~i-----~~~C~sg~~al~~A~~~i~ 83 (110)
+...++++++|+++|++++|||.|.. ++.++ |......+.+.+|- ..+...+ ....++|...+..+...++
T Consensus 254 ~~~~~ai~~Al~~agi~p~dId~i~~hgtgt~~~D~~E~~al~~~fg~-~~~v~s~K~~~GH~~~AaG~~~~~~~~~~l~ 332 (381)
T PRK05952 254 KSAIAAIQQCLARSGLTPEDIDYIHAHGTATRLNDQREANLIQALFPH-RVAVSSTKGATGHTLGASGALGVAFSLLALR 332 (381)
T ss_pred HHHHHHHHHHHHHhCCCHHHeeEEEccCCCCCCCcHHHHHHHHHHcCC-CCeeecchhhhccChHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999864 33322 22112234444542 2232222 3456777888888888888
Q ss_pred cC
Q psy13271 84 SG 85 (110)
Q Consensus 84 sG 85 (110)
.|
T Consensus 333 ~~ 334 (381)
T PRK05952 333 HQ 334 (381)
T ss_pred cC
Confidence 88
No 148
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=93.03 E-value=0.4 Score=34.25 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCC
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT 57 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~ 57 (110)
..++++++|+++|++++|||.++.-... ...-..+.+.||+.
T Consensus 232 ~~~~i~~~L~~~gl~~~did~~~~H~~~--~~~~~~i~~~l~l~ 273 (329)
T PRK07204 232 LMKFIDKLLMDAGYTLADIDLIVPHQAS--GPAMRLIRKKLGVD 273 (329)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEeCCCC--HHHHHHHHHHcCCC
Confidence 4578899999999999999998864432 11224567778885
No 149
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=92.87 E-value=0.33 Score=34.72 Aligned_cols=76 Identities=20% Similarity=0.205 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCC-CCeeeE----eccchHHHHHHHHHHHHHHcC---
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTG-IPVFNV----NNNCSTGSSALMLAKQFIESG--- 85 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~-~~~~~i----~~~C~sg~~al~~A~~~i~sG--- 85 (110)
..++++++|+++|++++|||.+++.... ...-..+.+.||+.. .....+ ++++++-..+|..+ ++.|
T Consensus 228 ~~~~i~~~L~~~g~~~~did~~~~hq~~--~~~~~~~~~~lgl~~~k~~~~l~~~Gn~~sasi~~~L~~~---~~~g~~~ 302 (326)
T CHL00203 228 VPAVIIKCLNALNISIDEVDWFILHQAN--KRILEAIANRLSVPNSKMITNLEKYGNTSAASIPLALDEA---IQNNKIQ 302 (326)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEECCCC--HHHHHHHHHHhCCCHHHhhhHHHhhCcHHHHHHHHHHHHH---HHhCCCC
Confidence 4456888999999999999998874432 122345677888852 122222 33444444455444 3443
Q ss_pred -CCeEEEEee
Q psy13271 86 -SDCTLALGF 94 (110)
Q Consensus 86 -~~~vlv~g~ 94 (110)
-|.+++++.
T Consensus 303 ~Gd~vll~~~ 312 (326)
T CHL00203 303 PGQIIVLSGF 312 (326)
T ss_pred CCCEEEEEEE
Confidence 356666654
No 150
>PRK06025 acetyl-CoA acetyltransferase; Provisional
Probab=92.86 E-value=0.48 Score=35.55 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCCccccCeEEEE
Q psy13271 15 KEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 15 ~~a~~~al~~agl~~~~id~vi~~ 38 (110)
..+++++|+++|++++|||.+-+.
T Consensus 318 ~~Ai~~aL~~AGl~~~DID~~ei~ 341 (417)
T PRK06025 318 VPAAKKVLAKAGLTKDDIDLWEIN 341 (417)
T ss_pred HHHHHHHHHHcCCCHHHCcEEEEc
Confidence 478999999999999999998764
No 151
>PRK06840 hypothetical protein; Validated
Probab=92.62 E-value=0.49 Score=33.95 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCCCCeeeE----eccchHHHHHHHHHHHHHHcC----
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIPVFNV----NNNCSTGSSALMLAKQFIESG---- 85 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~~~~~~i----~~~C~sg~~al~~A~~~i~sG---- 85 (110)
..++++++|+++|++++|||.++..... ...-..+.+.||+..-....+ +.++++-...|..+ +++|
T Consensus 239 ~~~~i~~~L~~~gl~~~did~~~~h~~~--~~~~~~~~~~Lgl~~~~~~~~~~~Gn~~sas~~~~L~~~---~~~~~~~~ 313 (339)
T PRK06840 239 FLKVIREALRKSGYTPKDIDYLAILHMK--RSAHIALLEGLGLTEEQAIYLDEYGHLGQLDQILSLHLA---LEQGKLKD 313 (339)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEECCcC--HHHHHHHHHHcCCCHHHeEeHHhccchhhhhHHHHHHHH---HHcCCCCC
Confidence 4578889999999999999998764321 112245677888853111212 23344444444433 3443
Q ss_pred CCeEEEEeec
Q psy13271 86 SDCTLALGFE 95 (110)
Q Consensus 86 ~~~vlv~g~e 95 (110)
-+++++++.-
T Consensus 314 Gd~ill~~~G 323 (339)
T PRK06840 314 GDLVVLVSAG 323 (339)
T ss_pred CCEEEEEEEe
Confidence 3566666643
No 152
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=92.61 E-value=0.52 Score=35.17 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEE-EeecC--CCcchhHHHHHcCCCCCCeeeE-----eccchHHHHHHHHHHHHHHc
Q psy13271 13 LAKEALIKALDDAGISINQVQQACC-GYVYG--DSTCGQRALYQIGMTGIPVFNV-----NNNCSTGSSALMLAKQFIES 84 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~-~~~~~--~~~~~~~~a~~lg~~~~~~~~i-----~~~C~sg~~al~~A~~~i~s 84 (110)
-..++++++|+++|++++|||.+-. ++.++ |......+.+.+|-...+...+ ....++|...+..+...++.
T Consensus 287 ~~~~a~~~Al~~agi~~~did~ie~hgtgt~~~D~~E~~Al~~~fg~~~~~v~s~K~~~GH~~~AaG~~~li~~~l~l~~ 366 (418)
T PRK07910 287 RAGHAMTRAIELAGLTPGDIDHVNAHATGTSVGDVAEGKAINNALGGHRPAVYAPKSALGHSVGAVGAVESILTVLALRD 366 (418)
T ss_pred HHHHHHHHHHHHhCCCHHHCCEEEcCCcCCCCCCHHHHHHHHHHhCCCCCceeCccccccccHHHHHHHHHHHHHHHHhc
Confidence 3568899999999999999999854 33222 2211233455566422122211 34556777777777778888
Q ss_pred C
Q psy13271 85 G 85 (110)
Q Consensus 85 G 85 (110)
|
T Consensus 367 ~ 367 (418)
T PRK07910 367 G 367 (418)
T ss_pred C
Confidence 7
No 153
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=92.58 E-value=0.49 Score=34.69 Aligned_cols=73 Identities=21% Similarity=0.149 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEE-eecC--CCcchhHHHHHcCCC--CCCeeeE-----eccchHHHHHHHHHHHHH
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCG-YVYG--DSTCGQRALYQIGMT--GIPVFNV-----NNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~-~~~~--~~~~~~~~a~~lg~~--~~~~~~i-----~~~C~sg~~al~~A~~~i 82 (110)
-..++++++|+++|++++|||.+... +.++ |......+...++-. ..+...+ +...++|+..+..+...+
T Consensus 276 ~~~~ai~~Al~~Agi~~~dId~ve~h~tgt~~~D~~E~~a~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~~~~~~~~l 355 (407)
T TIGR03150 276 GAARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRVFGDHAYKLAVSSTKSMTGHLLGAAGAIEAIFTVLAI 355 (407)
T ss_pred HHHHHHHHHHHHcCCCHhHCCEEeCcCCCCCCCCHHHHHHHHHHhccCCCCCceeCCcchhchhHHHHHHHHHHHHHHHH
Confidence 35678999999999999999988643 2221 221122344455532 2232221 345677887888888888
Q ss_pred HcC
Q psy13271 83 ESG 85 (110)
Q Consensus 83 ~sG 85 (110)
+.|
T Consensus 356 ~~~ 358 (407)
T TIGR03150 356 RDG 358 (407)
T ss_pred hcC
Confidence 886
No 154
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=92.28 E-value=0.65 Score=34.54 Aligned_cols=72 Identities=15% Similarity=0.027 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEe-ecC--CCcchhHHHHHcCCC--CCCeeeEeccchHHHHHHHHHHHHHHcC
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGY-VYG--DSTCGQRALYQIGMT--GIPVFNVNNNCSTGSSALMLAKQFIESG 85 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~-~~~--~~~~~~~~a~~lg~~--~~~~~~i~~~C~sg~~al~~A~~~i~sG 85 (110)
-..+++++||+++|+ ++|||.|.... .++ |......+.+.++.. ....+.=....++|...+..+...|+.|
T Consensus 281 ~~~~am~~AL~~Agl-~~~IdyI~ahgtgT~~~D~~E~~Ai~~~f~~pvsS~Ks~~GH~l~AAGa~e~i~~~lal~~g 357 (398)
T PRK06519 281 DLEASLERLLKPAGG-LAAPTAVISGATGAHPATAEEKAALEAALAGPVRGIGTLFGHTMEAQFPLGLALAALSVSKG 357 (398)
T ss_pred HHHHHHHHHHHHCCC-cccCCEEEeCCCCCCCccHHHHHHHHHHcCCCccccchhhccchHHHHHHHHHHHHHHHhcC
Confidence 456799999999999 89999987532 222 221122344555531 1112222356677777777888888888
No 155
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=92.16 E-value=0.72 Score=33.87 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCC-CCeeeE----eccchHHHHHHHHHHHHHHcC---
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTG-IPVFNV----NNNCSTGSSALMLAKQFIESG--- 85 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~-~~~~~i----~~~C~sg~~al~~A~~~i~sG--- 85 (110)
..++++++|+++|++++|||.++..... ...-..+.+.||+.. .....+ ++++++-..+|..+ ++.|
T Consensus 282 ~~~~i~~~L~~~gl~~~dId~~v~Hq~n--~~~~~~~~~~Lgl~~ek~~~~l~~~GNt~sAsi~~~L~~~---~~~g~~~ 356 (379)
T PLN02326 282 VPQVIESALQKAGLTAESIDWLLLHQAN--QRIIDAVAQRLGIPPEKVISNLANYGNTSAASIPLALDEA---VRSGKVK 356 (379)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEECCCC--HHHHHHHHHHcCCCHHHeeecHhhcCcHHHHHHHHHHHHH---HHcCCCC
Confidence 3356788899999999999988864331 112245778888853 122233 23444444444444 3443
Q ss_pred -CCeEEEEee
Q psy13271 86 -SDCTLALGF 94 (110)
Q Consensus 86 -~~~vlv~g~ 94 (110)
-|.+|+++.
T Consensus 357 ~Gd~vll~~~ 366 (379)
T PLN02326 357 KGDVIATAGF 366 (379)
T ss_pred CCCEEEEEEE
Confidence 356776654
No 156
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=92.09 E-value=0.57 Score=34.40 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEE-eecCC--CcchhHHHHHcCCC--CCCeee-----EeccchHHHHHHHHHHHH
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCG-YVYGD--STCGQRALYQIGMT--GIPVFN-----VNNNCSTGSSALMLAKQF 81 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~-~~~~~--~~~~~~~a~~lg~~--~~~~~~-----i~~~C~sg~~al~~A~~~ 81 (110)
+-..++++++|+++|++++|||.|... +.++. ......+.+.++-. +.+... =+...++|...+..+...
T Consensus 274 ~~~~~a~~~Al~~Agi~~~dId~i~~hgtgt~~~D~~E~~ai~~~~~~~~~~~~v~s~K~~~Gh~~~Asg~~~l~~~~~~ 353 (407)
T cd00828 274 KGIARAIRTALAKAGLSLDDLDVISAHGTSTPANDVAESRAIAEVAGALGAPLPVTAQKALFGHSKGAAGALQLIGALQS 353 (407)
T ss_pred HHHHHHHHHHHHHcCCCHHHcCEEecccccCccccHHHHHHHHHHHhccCCCceeecccchhccchhhhhHHHHHHHHHH
Confidence 456778999999999999999988653 22221 11112233344421 222222 245667777778788888
Q ss_pred HHcC
Q psy13271 82 IESG 85 (110)
Q Consensus 82 i~sG 85 (110)
++.|
T Consensus 354 l~~~ 357 (407)
T cd00828 354 LEHG 357 (407)
T ss_pred HhcC
Confidence 8887
No 157
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=91.96 E-value=0.57 Score=34.53 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEE-eecC--CCcchhHHHHHcCCCCCCeee-----EeccchHHHHHHHHHHHHHHcC
Q psy13271 14 AKEALIKALDDAGISINQVQQACCG-YVYG--DSTCGQRALYQIGMTGIPVFN-----VNNNCSTGSSALMLAKQFIESG 85 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~-~~~~--~~~~~~~~a~~lg~~~~~~~~-----i~~~C~sg~~al~~A~~~i~sG 85 (110)
..++++++|+++|++++|||.+... +.++ |......+.+.+|-. .|+.. =+..+++|...+..+...++.|
T Consensus 262 ~~~a~~~Al~~Agl~~~dId~v~~hgtgt~~~D~~E~~al~~~f~~~-~pv~s~K~~~Gh~~~AaG~~~l~~~~~~l~~~ 340 (392)
T PRK09185 262 AILAMQQALADAGLAPADIGYINLHGTATPLNDAMESRAVAAVFGDG-VPCSSTKGLTGHTLGAAGAVEAAICWLALRHG 340 (392)
T ss_pred HHHHHHHHHHHcCCCHHHccEEEeCCCCCcCCCHHHHHHHHHHhCCC-CceeCCCcccccChhhcchHHHHHHHHHHhcC
Confidence 3578999999999999999987643 2222 211112344445532 23222 2467778888888888888988
Q ss_pred -CCe
Q psy13271 86 -SDC 88 (110)
Q Consensus 86 -~~~ 88 (110)
.--
T Consensus 341 ~ip~ 344 (392)
T PRK09185 341 LPPH 344 (392)
T ss_pred CCCC
Confidence 443
No 158
>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II
Probab=91.92 E-value=0.56 Score=36.29 Aligned_cols=72 Identities=19% Similarity=0.134 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCCccccCeEEE-EeecC--CCcchhHHHHHcCCC-CCCeee-----EeccchHHHHHHHHHHHHHHc
Q psy13271 14 AKEALIKALDDAGISINQVQQACC-GYVYG--DSTCGQRALYQIGMT-GIPVFN-----VNNNCSTGSSALMLAKQFIES 84 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~-~~~~~--~~~~~~~~a~~lg~~-~~~~~~-----i~~~C~sg~~al~~A~~~i~s 84 (110)
..++++++|+++|++++|||.|-. ++.++ |......+...+|-. ..+... =...+++|...+..+...|+.
T Consensus 407 ~~~am~~AL~~AGl~p~dIdyInaHGTGT~~gD~~E~~Ai~~~Fg~~~~~pV~S~Ks~iGH~~gAAGa~eli~~~lal~~ 486 (540)
T PLN02787 407 VILCIEKALAQSGVSKEDVNYINAHATSTKAGDLKEYQALMRCFGQNPELRVNSTKSMIGHLLGAAGAVEAIATVQAIRT 486 (540)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEccCccCCCCCHHHHHHHHHHhCCCCCceeeCCCCCcCCCcccchHHHHHHHHHHHhc
Confidence 457899999999999999998864 33332 222122344555532 122221 134567777777778888998
Q ss_pred C
Q psy13271 85 G 85 (110)
Q Consensus 85 G 85 (110)
|
T Consensus 487 g 487 (540)
T PLN02787 487 G 487 (540)
T ss_pred C
Confidence 8
No 159
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=91.86 E-value=0.46 Score=35.01 Aligned_cols=72 Identities=19% Similarity=0.139 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEE-eecC--CCcchhHHHHHcCC--CCCCeee----E-eccchHHHHHHHHHHHHHH
Q psy13271 14 AKEALIKALDDAGISINQVQQACCG-YVYG--DSTCGQRALYQIGM--TGIPVFN----V-NNNCSTGSSALMLAKQFIE 83 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~-~~~~--~~~~~~~~a~~lg~--~~~~~~~----i-~~~C~sg~~al~~A~~~i~ 83 (110)
..++++++|+++|++++|||.+-.. +.++ +......+...++. ...+... + +..+++|...+..+...++
T Consensus 278 ~~~a~~~Al~~agi~~~dId~v~~hgtgt~~~d~~E~~al~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~~i~~~l~l~ 357 (411)
T PRK07314 278 AARAMKLALKDAGINPEDIDYINAHGTSTPAGDKAETQAIKRVFGEHAYKVAVSSTKSMTGHLLGAAGAVEAIFSVLAIR 357 (411)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEccccCCccccHHHHHHHHHHhcccCCCCeeECccchhchhHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999998643 2221 11111233444552 1222221 1 3456788888888888888
Q ss_pred cC
Q psy13271 84 SG 85 (110)
Q Consensus 84 sG 85 (110)
.|
T Consensus 358 ~~ 359 (411)
T PRK07314 358 DQ 359 (411)
T ss_pred CC
Confidence 88
No 160
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=91.85 E-value=0.77 Score=34.22 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEE-EeecC--CCcchhHHHHHcCC---CCCCeeeE-----eccchHHHHHHHHHHHH
Q psy13271 13 LAKEALIKALDDAGISINQVQQACC-GYVYG--DSTCGQRALYQIGM---TGIPVFNV-----NNNCSTGSSALMLAKQF 81 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~-~~~~~--~~~~~~~~a~~lg~---~~~~~~~i-----~~~C~sg~~al~~A~~~ 81 (110)
-..++++++|+++|++++|||.|-. ++.++ |......+.+.+|- +..+...+ ....++|...+..+...
T Consensus 279 ~~~~a~~~Al~~agi~~~did~ie~hgtgt~~~D~~E~~al~~~fg~~~~~~~~v~s~K~~~GH~~~AaG~~~~~~~~l~ 358 (414)
T PRK08722 279 GGALAMEAAMRDAGVTGEQIGYVNAHGTSTPAGDVAEIKGIKRALGEAGSKQVLVSSTKSMTGHLLGAAGSVEAIITVMS 358 (414)
T ss_pred HHHHHHHHHHHHcCCCHHHcCEEEccCccCCCCCHHHHHHHHHHhcccCCCCceeeCcccccccchHHHHHHHHHHHHHH
Confidence 4577889999999999999998854 33322 22112234445542 22333222 34567777777777888
Q ss_pred HHcC
Q psy13271 82 IESG 85 (110)
Q Consensus 82 i~sG 85 (110)
++.|
T Consensus 359 l~~~ 362 (414)
T PRK08722 359 LVDQ 362 (414)
T ss_pred HhcC
Confidence 8888
No 161
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=91.48 E-value=0.76 Score=32.64 Aligned_cols=77 Identities=19% Similarity=0.208 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCC-CCeeeE----eccchHHHHHHHHHHHHHHcC-C-
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTG-IPVFNV----NNNCSTGSSALMLAKQFIESG-S- 86 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~-~~~~~i----~~~C~sg~~al~~A~~~i~sG-~- 86 (110)
..++++++|+++|++++|||.++..... ......+.+.+|+.. .....+ +.++++-...|. .+++.| .
T Consensus 227 ~~~~i~~~L~~~g~~~~did~~~~h~~~--~~~~~~~~~~lg~~~~~~~~~~~~~Gn~~sas~~~~L~---~~~~~g~~~ 301 (325)
T PRK12879 227 MPKGARQVLEKAGLTKDDIDWVIPHQAN--LRIIESLCEKLGIPMEKTLVSVEYYGNTSAATIPLALD---LALEQGKIK 301 (325)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEECCCC--HHHHHHHHHHcCCCHHHhhhhHhhhCchHHHHHHHHHH---HHHHcCCCC
Confidence 3467789999999999999999875432 122345677788842 111122 223344444443 344554 3
Q ss_pred --CeEEEEeec
Q psy13271 87 --DCTLALGFE 95 (110)
Q Consensus 87 --~~vlv~g~e 95 (110)
|.+++++.-
T Consensus 302 ~Gd~vll~~~G 312 (325)
T PRK12879 302 PGDTLLLYGFG 312 (325)
T ss_pred CCCEEEEEEEc
Confidence 567766643
No 162
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.44 E-value=0.9 Score=34.06 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEE-EeecCCCcc--hhHHHHHcCCC-------CCCeeeEeccchHHHHHHHHHHHHH
Q psy13271 13 LAKEALIKALDDAGISINQVQQACC-GYVYGDSTC--GQRALYQIGMT-------GIPVFNVNNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~-~~~~~~~~~--~~~~a~~lg~~-------~~~~~~i~~~C~sg~~al~~A~~~i 82 (110)
=+.++++.||+++|++++|||.|.. +++++-... ...+.+.+|-. ....++=..-.++|..-+..+...+
T Consensus 277 Ga~~am~~AL~~Agl~~~~idYinaHgTsT~~nD~~E~~ai~~vfg~~~~~~~vsstKs~tGH~lGAaGaveai~~~l~l 356 (412)
T COG0304 277 GAIRAMRAALADAGLTPEDIDYINAHGTSTPANDKAESLAIKRVFGEHAKSLPVSSTKSLTGHTLGAAGAVEAIISLLAL 356 (412)
T ss_pred hHHHHHHHHHHHcCCCHhHCCEEeCCCccCCCccHHHHHHHHHHhcccccCceeeecccccccChhhHHHHHHHHHHHHH
Confidence 3568899999999999999999875 333332211 12334455521 1112222334445555555667777
Q ss_pred HcC
Q psy13271 83 ESG 85 (110)
Q Consensus 83 ~sG 85 (110)
+.|
T Consensus 357 ~~g 359 (412)
T COG0304 357 RDG 359 (412)
T ss_pred hcC
Confidence 766
No 163
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=91.21 E-value=1.1 Score=31.70 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCC-CCeeeE----eccchHHHHHHHHHHHH--HHcCC
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTG-IPVFNV----NNNCSTGSSALMLAKQF--IESGS 86 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~-~~~~~i----~~~C~sg~~al~~A~~~--i~sG~ 86 (110)
..++++++|+++|++++|||.++.... .......++..||+.. .....+ +.++++-...|..+.+. ++. -
T Consensus 221 ~~~~~~~~l~~~g~~~~di~~~~~h~~--~~~~~~~~~~~lgi~~~k~~~~~~~~Gn~~sas~~~~L~~~~~~~~~~~-G 297 (318)
T TIGR00747 221 MGDVVEETLEANGLDPEDIDWFVPHQA--NLRIIEALAKRLELDMSQVVKTVHKYGNTSAASIPLALDELLRTGRIKP-G 297 (318)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEECCC--CHHHHHHHHHHcCCCHHHeeehHhhhCCHHHHHHHHHHHHHHHcCCCCC-C
Confidence 456788899999999999999986432 2222345677888852 111222 33444445555443331 222 3
Q ss_pred CeEEEEee
Q psy13271 87 DCTLALGF 94 (110)
Q Consensus 87 ~~vlv~g~ 94 (110)
|++++++.
T Consensus 298 d~vll~~~ 305 (318)
T TIGR00747 298 DLLLLVAF 305 (318)
T ss_pred CEEEEEEE
Confidence 77777765
No 164
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=91.08 E-value=0.75 Score=32.46 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCC
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT 57 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~ 57 (110)
...+++.++|+++|++++|||.+++.... ......+.+.+|+.
T Consensus 224 ~~~~~i~~~l~~~g~~~~di~~~~~h~~~--~~~~~~~~~~lgl~ 266 (320)
T cd00830 224 LMPESIEEALEKAGLTPDDIDWFVPHQAN--LRIIEAVAKRLGLP 266 (320)
T ss_pred hhHHHHHHHHHHcCCCHHHCCEEEECCCC--HHHHHHHHHHhCCC
Confidence 45678889999999999999998875432 12234567778884
No 165
>PRK05790 putative acyltransferase; Provisional
Probab=91.07 E-value=1.3 Score=32.74 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhH--HHHHcCCCCCCee------eE-eccchHHHHHHHHHHHHHHc
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQR--ALYQIGMTGIPVF------NV-NNNCSTGSSALMLAKQFIES 84 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~--~a~~lg~~~~~~~------~i-~~~C~sg~~al~~A~~~i~s 84 (110)
...+++++|+++|++++|||.+-+. +.+.... ..+.||+...|.. .. ....++|..-+..+...++.
T Consensus 293 ~~~a~~~a~~~Agi~~~did~~e~~----d~f~~~~l~~~e~lg~~~~pvN~~GG~l~~Ghp~gatG~~~~~e~~~qL~~ 368 (393)
T PRK05790 293 PVPAIRKALEKAGWSLADLDLIEIN----EAFAAQALAVEKELGLDPEKVNVNGGAIALGHPIGASGARILVTLLHEMKR 368 (393)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEeC----cHHHHHHHHHHHHhCCChhhcCCCcchhhhCcchhhhHHHHHHHHHHHHHh
Confidence 4578999999999999999998642 2222222 2345665321211 11 34566777777777788876
Q ss_pred C-CCeEEEEe
Q psy13271 85 G-SDCTLALG 93 (110)
Q Consensus 85 G-~~~vlv~g 93 (110)
. .++.|+-.
T Consensus 369 ~~~~~gl~~~ 378 (393)
T PRK05790 369 RGAKKGLATL 378 (393)
T ss_pred cCCCeEEEEE
Confidence 5 77666543
No 166
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Probab=90.91 E-value=1 Score=33.56 Aligned_cols=74 Identities=18% Similarity=0.073 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHH-cCCCccccCeEEEE-eecC--CCcchhHHHHHcCCC---CCCeee-----EeccchHHHHHHHHHH
Q psy13271 12 ELAKEALIKALDD-AGISINQVQQACCG-YVYG--DSTCGQRALYQIGMT---GIPVFN-----VNNNCSTGSSALMLAK 79 (110)
Q Consensus 12 ~l~~~a~~~al~~-agl~~~~id~vi~~-~~~~--~~~~~~~~a~~lg~~---~~~~~~-----i~~~C~sg~~al~~A~ 79 (110)
.-..++++++|++ +|++++|||.|-.. +.++ +......+.+.+|-. ..+... =....++|...+..+.
T Consensus 283 ~~~~~ai~~Al~~~Agi~~~dId~ie~hgtgt~~~D~~E~~al~~~~~~~~~~~~~v~s~K~~~GH~~~AaG~~~l~~~~ 362 (421)
T PTZ00050 283 RGARRCMENALKDGANININDVDYVNAHATSTPIGDKIELKAIKKVFGDSGAPKLYVSSTKGGLGHLLGAAGAVESIVTI 362 (421)
T ss_pred HHHHHHHHHHHHhccCCChhhCCEEECCCccCCCCCHHHHHHHHHHhccccCCCceEECccccccccHHHHHHHHHHHHH
Confidence 3456789999999 99999999988653 2221 111112344445531 222211 2356678888888888
Q ss_pred HHHHcC
Q psy13271 80 QFIESG 85 (110)
Q Consensus 80 ~~i~sG 85 (110)
..++.|
T Consensus 363 l~l~~~ 368 (421)
T PTZ00050 363 LSLYEQ 368 (421)
T ss_pred HHHHcC
Confidence 889888
No 167
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=90.87 E-value=1.6 Score=32.54 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhH--HHHHcCCC--CCCeeeEe-------ccchHHHHHHHHHHHHH
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQR--ALYQIGMT--GIPVFNVN-------NNCSTGSSALMLAKQFI 82 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~--~a~~lg~~--~~~~~~i~-------~~C~sg~~al~~A~~~i 82 (110)
...+++++|+++|++++|||.+-+. +.+.... ..+.||+. ..|..... ...++|...+..+...+
T Consensus 299 ~~~a~~~al~~Agl~~~DId~~ei~----D~f~~~~l~~~e~lg~~~~~~pvN~~GG~la~Ghp~gasG~~~~~e~~~qL 374 (401)
T PRK09050 299 PAPATRKLLARLGLTIDQFDVIELN----EAFAAQGLAVLRQLGLADDDARVNPNGGAIALGHPLGMSGARLVLTALHQL 374 (401)
T ss_pred HHHHHHHHHHHcCCCHHHCCccccC----cHhHHHHHHHHHHcCCCCCCCCEeCCCchHhcCCchhHHHHHHHHHHHHHH
Confidence 3578999999999999999988643 2222222 23567872 22322221 12344555666666666
Q ss_pred HcC-CCeEEE
Q psy13271 83 ESG-SDCTLA 91 (110)
Q Consensus 83 ~sG-~~~vlv 91 (110)
+.. ..+.|+
T Consensus 375 r~~~~~~g~~ 384 (401)
T PRK09050 375 ERTGGRYALC 384 (401)
T ss_pred HhcCCCeEEE
Confidence 655 555554
No 168
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases. This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt
Probab=90.86 E-value=1.1 Score=32.97 Aligned_cols=75 Identities=19% Similarity=0.155 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhH--HHHHcCCCCCCee------e-EeccchHHHHHHHHHHHHHHc
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQR--ALYQIGMTGIPVF------N-VNNNCSTGSSALMLAKQFIES 84 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~--~a~~lg~~~~~~~------~-i~~~C~sg~~al~~A~~~i~s 84 (110)
..++++++|+++|++++|||.+-+-. .+.... ..+.||+...|.. . =....++|+..+..+...++.
T Consensus 288 ~~~a~~~a~~~Agi~~~did~~e~~d----~fa~~~~~~~e~lG~~~~pvn~~GG~l~~Ghp~gasG~~~~~e~~~qL~g 363 (386)
T TIGR01930 288 PVPAIPKALKKAGLSISDIDLFEINE----AFAAQVLACIKELGLDLEKVNVNGGAIALGHPLGASGARIVTTLLHELKR 363 (386)
T ss_pred HHHHHHHHHHHcCCCHHHCCeeehcc----hhHHHHHHHHHHhCCChhhcCCCCChHhhCCcHHHHHHHHHHHHHHHHHh
Confidence 35899999999999999999884432 221111 2245665221211 1 123456677788888888887
Q ss_pred C-CCeEEEE
Q psy13271 85 G-SDCTLAL 92 (110)
Q Consensus 85 G-~~~vlv~ 92 (110)
. .++.|+-
T Consensus 364 ~~~~~gl~~ 372 (386)
T TIGR01930 364 RGGRYGLAT 372 (386)
T ss_pred cCCCEEEEE
Confidence 6 8888874
No 169
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=90.82 E-value=0.79 Score=31.33 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchh----HHHHHcCC-CCCCeeeEe
Q psy13271 8 TDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQ----RALYQIGM-TGIPVFNVN 65 (110)
Q Consensus 8 ~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~----~~a~~lg~-~~~~~~~i~ 65 (110)
..-.+.....+.++|.+++++.+|+|.|+++..-|.+ .+- .+++-|.+ .++|.+.++
T Consensus 35 r~hse~l~~~i~~ll~~~~~~~~dld~iav~~GPGSF-TGlRIG~~~AkgLA~~l~iplvgvs 96 (220)
T COG1214 35 RNHAERLMPMIDELLKEAGLSLQDLDAIAVAKGPGSF-TGLRIGVAFAKGLALALNIPLVGVS 96 (220)
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHHCCEEEEccCCCcc-cchhhHHHHHHHHHHHcCCCEEEeC
Confidence 4456778888999999999999999999997654333 332 23333332 245777664
No 170
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated
Probab=90.62 E-value=1.3 Score=32.79 Aligned_cols=71 Identities=10% Similarity=0.014 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEE-eecCCCcchhHHHHHcC--CCCCCeeeE-----eccchHHHHHHHHHHHHHHcC
Q psy13271 14 AKEALIKALDDAGISINQVQQACCG-YVYGDSTCGQRALYQIG--MTGIPVFNV-----NNNCSTGSSALMLAKQFIESG 85 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~-~~~~~~~~~~~~a~~lg--~~~~~~~~i-----~~~C~sg~~al~~A~~~i~sG 85 (110)
..++++++|+++|++++|||.|... +.++ ..........++ ..+.|...+ ....++|...+..+...++.|
T Consensus 283 ~~~a~~~Al~~Agi~~~dId~v~~hgtgt~-~~D~~E~~al~~~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~l~l~~~ 361 (410)
T PRK07103 283 EMRVIRAALRRAGLGPEDIDYVNPHGTGSP-LGDETELAALFASGLAHAWINATKSLTGHGLSAAGIVELIATLLQMRAG 361 (410)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEccCCCCC-CCCHHHHHHHhcCCCCCCeEECCCcccccCchhhhHHHHHHHHHHHhCC
Confidence 3578999999999999999987643 2222 111211111122 222332221 345667777787788888888
No 171
>PLN02287 3-ketoacyl-CoA thiolase
Probab=90.61 E-value=1.6 Score=33.04 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHH--HHcCCCCCCee------eE-eccchHHHHHHHHHHHHHHc
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRAL--YQIGMTGIPVF------NV-NNNCSTGSSALMLAKQFIES 84 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a--~~lg~~~~~~~------~i-~~~C~sg~~al~~A~~~i~s 84 (110)
...+++++|+++|++++|||.+=+. +.+....+. +.||+...|.. .. +...+||..-+..+...++.
T Consensus 333 ~~~A~~~al~~Agl~~~DID~~Ei~----daFa~~~l~~~e~lG~~~~pvN~sGG~la~GHp~gAsG~~~v~~l~~qL~~ 408 (452)
T PLN02287 333 PAVAIPAAVKAAGLELDDIDLFEIN----EAFASQFVYCCKKLGLDPEKVNVNGGAIALGHPLGATGARCVATLLHEMKR 408 (452)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEec----chHHHHHHHHHHHcCCCccccCCCCcHHhccCcHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999988432 333333333 45776422211 11 23345666666666666654
Q ss_pred C-C--CeEEE
Q psy13271 85 G-S--DCTLA 91 (110)
Q Consensus 85 G-~--~~vlv 91 (110)
. . ++.|+
T Consensus 409 ~~~~~~~gl~ 418 (452)
T PLN02287 409 RGKDCRFGVV 418 (452)
T ss_pred cCCCCCeeEE
Confidence 3 5 66553
No 172
>PRK09051 beta-ketothiolase; Provisional
Probab=90.46 E-value=2.3 Score=31.60 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhH--HHHHcCCCCCCeee------E-eccchHHHHHHHHHHHHHHc
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQR--ALYQIGMTGIPVFN------V-NNNCSTGSSALMLAKQFIES 84 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~--~a~~lg~~~~~~~~------i-~~~C~sg~~al~~A~~~i~s 84 (110)
...|++++|+++|++++|||.+=+. +.+.... ..+.||+...|... . +...++|..-+..+...++.
T Consensus 294 ~~~a~~~al~~agi~~~did~~ei~----d~f~~~~~~~~e~lg~~~~~vN~~GG~~a~Ghp~gAsG~~~~~~~~~~L~~ 369 (394)
T PRK09051 294 PVPATQKALERAGLTVADLDVIEAN----EAFAAQACAVTRELGLDPAKVNPNGSGISLGHPVGATGAIITVKALYELQR 369 (394)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEec----CccHHHHHHHHHHhCCCccccCCCccHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999988653 2222222 23557764222111 1 23355666666666666664
Q ss_pred C-CCeEEE
Q psy13271 85 G-SDCTLA 91 (110)
Q Consensus 85 G-~~~vlv 91 (110)
. .++.|+
T Consensus 370 ~~~~~g~~ 377 (394)
T PRK09051 370 IGGRYALV 377 (394)
T ss_pred cCCCEEEE
Confidence 4 555543
No 173
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=90.44 E-value=2 Score=31.98 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEE
Q psy13271 13 LAKEALIKALDDAGISINQVQQACC 37 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~ 37 (110)
-...|++++|+++|++++|||.+-+
T Consensus 298 ~~~~A~~~al~~Agi~~~did~~ei 322 (399)
T PRK09052 298 GPIEAIPAALKQAGLKQDDLDWIEL 322 (399)
T ss_pred hHHHHHHHHHHHcCCCHHHcCEEEe
Confidence 3468999999999999999999864
No 174
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=90.44 E-value=0.95 Score=32.99 Aligned_cols=75 Identities=17% Similarity=0.084 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHcCCCccccCeEEEE-eecC--CCcchhHHHHHcCCC-CCCeeeE-----eccchHHHHHHHHHHHH
Q psy13271 11 PELAKEALIKALDDAGISINQVQQACCG-YVYG--DSTCGQRALYQIGMT-GIPVFNV-----NNNCSTGSSALMLAKQF 81 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~~id~vi~~-~~~~--~~~~~~~~a~~lg~~-~~~~~~i-----~~~C~sg~~al~~A~~~ 81 (110)
.+-..++++++|+++|++++|||.|-.- +.++ |......+.+.+|-. ..|...+ ..-.++|...+..+...
T Consensus 205 ~~~~~~ai~~AL~~Agl~p~dIdyIeaHgtgT~~~D~~E~~Ai~~~fg~~~~~~v~s~K~~~GH~~~AaG~~~~~~~~l~ 284 (342)
T PRK14691 205 GDGAYRAMKIALRQAGITPEQVQHLNAHATSTPVGDLGEINAIKHLFGESNALAITSTKSATGHLLGAAGGLETIFTVLA 284 (342)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEecCCCCcCCCHHHHHHHHHHhCCCCCceEECCcccccCCcchhhHHHHHHHHHH
Confidence 3456788999999999999999987543 2222 221122344556532 2232222 22345555555555667
Q ss_pred HHcC
Q psy13271 82 IESG 85 (110)
Q Consensus 82 i~sG 85 (110)
++.|
T Consensus 285 l~~~ 288 (342)
T PRK14691 285 LRDQ 288 (342)
T ss_pred HhCC
Confidence 7877
No 175
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=90.32 E-value=1.6 Score=27.00 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=32.6
Q ss_pred HHHHHHHcCCCccccCeEEEEeecCCC--cchhHHHHHc-CCCCCCeee
Q psy13271 18 LIKALDDAGISINQVQQACCGYVYGDS--TCGQRALYQI-GMTGIPVFN 63 (110)
Q Consensus 18 ~~~al~~agl~~~~id~vi~~~~~~~~--~~~~~~a~~l-g~~~~~~~~ 63 (110)
..+.+++.+++++||-.+++. .++|. .+|+.+++.+ |+..+|.+.
T Consensus 26 l~~ii~~N~l~~edivSv~FT-~T~DL~a~FPA~aaR~~~Gw~~Vplmc 73 (117)
T TIGR01796 26 LTELMERNELTPEDLISVIFT-VTEDLHADFPAAAARGLPGWTDVPVMC 73 (117)
T ss_pred HHHHHHHcCCCHHHEEEEEEE-ecCcccccChHHHHHhccCCCCcceec
Confidence 345567789999999888874 44443 3577888888 998777654
No 176
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=90.18 E-value=1.9 Score=32.07 Aligned_cols=74 Identities=18% Similarity=0.181 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHH--HHHcCCC--CCCeeeEe-------ccchHHHHHHHHHHHHH
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRA--LYQIGMT--GIPVFNVN-------NNCSTGSSALMLAKQFI 82 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~--a~~lg~~--~~~~~~i~-------~~C~sg~~al~~A~~~i 82 (110)
...|++++|+++|++++|||.+-+. +.+....+ .+.||+. ..|..... ...++|..-+..+...+
T Consensus 298 ~~~A~~~al~~AGl~~~DID~iei~----dafa~~~l~~~e~lg~~~~~~pvN~~GG~la~GHp~gasG~~~v~e~~~qL 373 (400)
T PRK13359 298 PAPATQKLLARLGMTLDQFDVIELN----EAFASQGLAVLRELGLADDDARVNPNGGAIALGHPLGASGARLVTTALYQL 373 (400)
T ss_pred HHHHHHHHHHHhCCCHHHcCcCccC----cHhHHHHHHHHHHcCCCCCCCCEECCCchhhcCCchhHHHHHHHHHHHHHH
Confidence 3688999999999999999988642 33322232 3557772 22222111 12345666666666666
Q ss_pred HcC-CCeEEE
Q psy13271 83 ESG-SDCTLA 91 (110)
Q Consensus 83 ~sG-~~~vlv 91 (110)
+.. .++.|+
T Consensus 374 ~~~~~~~g~~ 383 (400)
T PRK13359 374 ERTGGRFALC 383 (400)
T ss_pred hhcCCCeEEE
Confidence 654 555554
No 177
>PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C ....
Probab=90.14 E-value=2.2 Score=26.61 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHH--HHHcCCCCCC------eeeE-eccchHHHHHHHHHHHHHHc
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRA--LYQIGMTGIP------VFNV-NNNCSTGSSALMLAKQFIES 84 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~--a~~lg~~~~~------~~~i-~~~C~sg~~al~~A~~~i~s 84 (110)
...|++++|+++|++++|||.+=+. +.+..+.+ .+.+|+...+ .... ....+||..-+......++.
T Consensus 24 p~~A~~~al~~ag~~~~did~~Ei~----EaFA~~~l~~~~~lg~~~~~vN~~GG~la~GHP~gasG~r~~~~l~~~L~~ 99 (123)
T PF02803_consen 24 PVPAARKALERAGLTPDDIDVIEIN----EAFAAQVLAFLEALGLDPEKVNPNGGALALGHPLGASGARLVVELAHQLRR 99 (123)
T ss_dssp HHHHHHHHHHHHT--GGGESEEEE------SBHHHHHHHHHHHTTGGGGBSTT--HHHH-BHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccccchhhcc----chhhhHHHHhhccccccccccCcccccccccccccccccchhhhhHHHHHH
Confidence 3578999999999999999988653 33333332 3456663211 1111 12233455555455555444
Q ss_pred C-CCeEEE
Q psy13271 85 G-SDCTLA 91 (110)
Q Consensus 85 G-~~~vlv 91 (110)
. .++.++
T Consensus 100 ~~~~~gla 107 (123)
T PF02803_consen 100 RGGRYGLA 107 (123)
T ss_dssp HTTSEEEE
T ss_pred hchhhhhH
Confidence 4 555554
No 178
>PRK06690 acetyl-CoA acetyltransferase; Provisional
Probab=90.12 E-value=1.9 Score=31.70 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEE
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~ 38 (110)
-...+++++|+++|++++|||.+.+.
T Consensus 259 ~~~~a~~~al~~Agl~~~Did~~ei~ 284 (361)
T PRK06690 259 GPIFAVNKLLNEMNMKVEDIDYFEIN 284 (361)
T ss_pred HHHHHHHHHHHHcCCCHHHcCEeeec
Confidence 45678899999999999999998663
No 179
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase
Probab=89.92 E-value=1.6 Score=32.66 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEE-eecC--CCcchhHHHHHcCCC----CCCeeeE-----eccchHHHHHHHHHH
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCG-YVYG--DSTCGQRALYQIGMT----GIPVFNV-----NNNCSTGSSALMLAK 79 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~-~~~~--~~~~~~~~a~~lg~~----~~~~~~i-----~~~C~sg~~al~~A~ 79 (110)
+-..++++++|+++|++++|||.|-.. +.++ +......+...+|-. +.+...+ +...++|+..+..+.
T Consensus 299 ~~~~~a~~~Al~~Agi~~~dId~ve~hgtgt~~~D~~E~~ai~~~~~~~~~~~~~~v~s~K~~~GH~~~AsG~~~li~~~ 378 (437)
T PLN02836 299 RGAVLAMTRALQQSGLHPNQVDYVNAHATSTPLGDAVEARAIKTVFSEHATSGGLAFSSTKGATGHLLGAAGAVEAIFSV 378 (437)
T ss_pred HHHHHHHHHHHHHcCCCHhHcCEEEccCCcCcCcCHHHHHHHHHHhcccccCCCCeeECCcccccccHHHHHHHHHHHHH
Confidence 345678999999999999999988643 2221 111112233334321 1222211 234556666666777
Q ss_pred HHHHcC
Q psy13271 80 QFIESG 85 (110)
Q Consensus 80 ~~i~sG 85 (110)
..++.|
T Consensus 379 l~l~~~ 384 (437)
T PLN02836 379 LAIHHG 384 (437)
T ss_pred HHHhcC
Confidence 788888
No 180
>PRK07937 lipid-transfer protein; Provisional
Probab=89.77 E-value=3.5 Score=30.22 Aligned_cols=74 Identities=19% Similarity=0.071 Sum_probs=45.6
Q ss_pred HHHHHHHH-cCCCccccCeEEEEeecCCCcchhH--HHHHcCCCC-CCeeeE------eccchHHHHHHHHHHHHHHcC-
Q psy13271 17 ALIKALDD-AGISINQVQQACCGYVYGDSTCGQR--ALYQIGMTG-IPVFNV------NNNCSTGSSALMLAKQFIESG- 85 (110)
Q Consensus 17 a~~~al~~-agl~~~~id~vi~~~~~~~~~~~~~--~a~~lg~~~-~~~~~i------~~~C~sg~~al~~A~~~i~sG- 85 (110)
++++++++ +|++++|||.+=+-. .+.... ..+.||+.+ .|...- +...++|+.-+..+...++.+
T Consensus 251 ~~~~a~~~aAgi~~~diD~~Ei~D----~F~~~~l~~~e~lGl~g~~pvN~~GG~l~ghp~gatG~~~~~e~~~QL~g~~ 326 (352)
T PRK07937 251 STALAAEAATGGDAGGVDVAELHA----PFTHQELILREALGLGDKTKVNPSGGALAANPMFAAGLERIGEAARHIWDGS 326 (352)
T ss_pred HHHHHHHHhcCCCHHHCCEEEEeC----CChHHHHHHHHHcCCCCCCCcCCCccchhcCchhHHHHHHHHHHHHHHhccC
Confidence 34455555 599999999885532 222222 235677633 222211 122346788888888899988
Q ss_pred CCeEEEEee
Q psy13271 86 SDCTLALGF 94 (110)
Q Consensus 86 ~~~vlv~g~ 94 (110)
++++|+.+.
T Consensus 327 a~~~l~~~~ 335 (352)
T PRK07937 327 ARRALAHAT 335 (352)
T ss_pred CCEEEEecc
Confidence 999998763
No 181
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=89.56 E-value=1.2 Score=32.96 Aligned_cols=74 Identities=20% Similarity=0.166 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEE-eecC--CCcchhHHHHHcCC-CCCCeeeE-----eccchHHHHHHHHHHHHH
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCG-YVYG--DSTCGQRALYQIGM-TGIPVFNV-----NNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~-~~~~--~~~~~~~~a~~lg~-~~~~~~~i-----~~~C~sg~~al~~A~~~i 82 (110)
+-..++++++|+++|++++|||.|-.. +.++ |......+...+|- .+.+...+ ....++|...+..+...+
T Consensus 288 ~~~~~a~~~Al~~Agi~p~dId~i~~hgtgt~~~D~~E~~al~~~fg~~~~~~v~s~K~~~GH~~gAaG~~~~~~~~l~l 367 (424)
T PRK06333 288 EGARRAMLIALRQAGIPPEEVQHLNAHATSTPVGDLGEVAAIKKVFGHVSGLAVSSTKSATGHLLGAAGGVEAIFTILAL 367 (424)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEeccCCCCccchHHHHHHHHHHhCCCCCceeECcccchhhhHHHHHHHHHHHHHHHH
Confidence 346788999999999999999998643 2222 11111234445552 12222211 234566666677777888
Q ss_pred HcC
Q psy13271 83 ESG 85 (110)
Q Consensus 83 ~sG 85 (110)
+.|
T Consensus 368 ~~g 370 (424)
T PRK06333 368 RDQ 370 (424)
T ss_pred hcC
Confidence 887
No 182
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=89.40 E-value=0.48 Score=34.99 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEee
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYV 40 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~ 40 (110)
..++..+|..+...+++++++++.+|+|.|+-++.
T Consensus 61 tresV~elV~dtl~e~~k~A~l~i~DL~FVVRSTG 95 (445)
T TIGR03285 61 TRESVAELVKDTLKESLKKAGLDIDDLDFVVRSTG 95 (445)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCChhhccEEEeccc
Confidence 55778899999999999999999999999887653
No 183
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=89.38 E-value=2.5 Score=26.23 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCccccCeEEEEeecCCC--cchhHHHHHc-CCCCCCeeeE
Q psy13271 16 EALIKALDDAGISINQVQQACCGYVYGDS--TCGQRALYQI-GMTGIPVFNV 64 (110)
Q Consensus 16 ~a~~~al~~agl~~~~id~vi~~~~~~~~--~~~~~~a~~l-g~~~~~~~~i 64 (110)
+-..+.+++.+++++||-.+++. .++|. ..|+..++.+ |+..+|.+..
T Consensus 24 eLl~~i~~~N~l~~~dIvSi~FT-~T~DL~a~fPA~a~R~~~g~~~Vpl~c~ 74 (118)
T PF07736_consen 24 ELLEEILERNELSPEDIVSIIFT-VTPDLDAAFPAAAARELPGWDDVPLMCA 74 (118)
T ss_dssp HHHHHHHHHTT--GGGEEEEEEE-E-TT--SS-TCHHHHHTTTGTTSEEEEE
T ss_pred HHHHHHHHHcCCCHHHEEEEEEE-eCCCcCccChHHHHHccCCCCccceecc
Confidence 33455667889999999988874 44554 3577888887 8887776543
No 184
>TIGR02430 pcaF beta-ketoadipyl CoA thiolase. Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid.
Probab=89.34 E-value=1.8 Score=32.20 Aligned_cols=74 Identities=22% Similarity=0.247 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhH--HHHHcCCC--CCCeeeEe-------ccchHHHHHHHHHHHHH
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQR--ALYQIGMT--GIPVFNVN-------NNCSTGSSALMLAKQFI 82 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~--~a~~lg~~--~~~~~~i~-------~~C~sg~~al~~A~~~i 82 (110)
...+++++|+++|++++|||.+-+. +.+.... ..+.||+. +.|..... ...++|...+..+...+
T Consensus 298 ~~~a~~~al~~Agl~~~DID~~ei~----D~f~~~~l~~~e~lG~~~~~~pvN~~GG~la~GHp~gasG~~~~~e~~~qL 373 (400)
T TIGR02430 298 PVPATQKLLARAGLSIDQFDVIELN----EAFAAQALAVLRELGLADDDARVNPNGGAIALGHPLGASGARLVLTALRQL 373 (400)
T ss_pred HHHHHHHHHHHhCCCHHHCCCcccC----cHHHHHHHHHHHHcCCCCCCCeECCCCchHhccChHHHHHHHHHHHHHHHH
Confidence 3578899999999999999988642 3332222 23567873 22222111 11345555555566666
Q ss_pred HcC-CCeEEE
Q psy13271 83 ESG-SDCTLA 91 (110)
Q Consensus 83 ~sG-~~~vlv 91 (110)
+.. .++.|+
T Consensus 374 r~~~~~~g~~ 383 (400)
T TIGR02430 374 ERSGGRYALC 383 (400)
T ss_pred HhcCCCEEEE
Confidence 544 555543
No 185
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=89.23 E-value=1.7 Score=32.26 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEE-EeecC--CCcchhHHHHHcCCCCCCeeeE-----eccchHHHHHHHHHHHHHH
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACC-GYVYG--DSTCGQRALYQIGMTGIPVFNV-----NNNCSTGSSALMLAKQFIE 83 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~-~~~~~--~~~~~~~~a~~lg~~~~~~~~i-----~~~C~sg~~al~~A~~~i~ 83 (110)
+-..++++++|++++++++|||.|.. ++.++ |......+...+|- ..|...+ ...+++|..-+..+...++
T Consensus 275 ~~~~~ai~~AL~~Agi~p~dId~I~~Hgtgt~~~D~~E~~Ai~~~fg~-~~pv~s~K~~~GH~~~AaG~~~~~~~~~~l~ 353 (405)
T PRK09116 275 ETMQIAMELALKDAGLAPEDIGYVNAHGTATDRGDIAESQATAAVFGA-RMPISSLKSYFGHTLGACGALEAWMSIEMMN 353 (405)
T ss_pred HHHHHHHHHHHHHhCCCHHHcCEEECcCccCCCCCHHHHHHHHHHhCC-CCeeECcchhhcccHHHHHHHHHHHHHHHHH
Confidence 34468889999999999999998864 33332 22222234455552 2233222 2335566666666777888
Q ss_pred cC
Q psy13271 84 SG 85 (110)
Q Consensus 84 sG 85 (110)
.|
T Consensus 354 ~~ 355 (405)
T PRK09116 354 EG 355 (405)
T ss_pred cC
Confidence 87
No 186
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=89.12 E-value=1.2 Score=33.30 Aligned_cols=76 Identities=20% Similarity=0.144 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEE-eecCCC--cchhHHHHHcCCC--CCCeeeE-----eccchHHHHHHHHHHHHH
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCG-YVYGDS--TCGQRALYQIGMT--GIPVFNV-----NNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~-~~~~~~--~~~~~~a~~lg~~--~~~~~~i-----~~~C~sg~~al~~A~~~i 82 (110)
-..++++++|+++|++++|||.+..- +.++.. .....+...+|-. ..|...+ ....++|...+..+...+
T Consensus 290 ~~~~ai~~AL~~agi~p~dId~i~~Hgtgt~~~d~~E~~al~~~~~~~~~~~pv~s~k~~~Gh~~~AsG~~~~~~~~l~l 369 (425)
T PRK06501 290 PAIGAIRAALADAGLTPEQIDYINAHGTSTPENDKMEYLGLSAVFGERLASIPVSSNKSMIGHTLTAAGAVEAVFSLLTI 369 (425)
T ss_pred HHHHHHHHHHHHcCCCHHHcCEEEecCccCcchHHHHHHHHHHHhcccCCCcEEECCCcccCCCchhhhHHHHHHHHHHH
Confidence 35678999999999999999998753 222211 1111233344421 1222211 344667777777778888
Q ss_pred HcC-CCe
Q psy13271 83 ESG-SDC 88 (110)
Q Consensus 83 ~sG-~~~ 88 (110)
+.| .--
T Consensus 370 ~~~~ipp 376 (425)
T PRK06501 370 QTGRLPP 376 (425)
T ss_pred hcCcCCC
Confidence 888 443
No 187
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=88.91 E-value=1.7 Score=31.85 Aligned_cols=79 Identities=11% Similarity=0.004 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHcCCCccccCeEEEEe-ecCC--CcchhHHHHHcCCC-----CCCe-----eeEeccchHHHHHHHH
Q psy13271 11 PELAKEALIKALDDAGISINQVQQACCGY-VYGD--STCGQRALYQIGMT-----GIPV-----FNVNNNCSTGSSALML 77 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~~id~vi~~~-~~~~--~~~~~~~a~~lg~~-----~~~~-----~~i~~~C~sg~~al~~ 77 (110)
.+-..++++++|+++|++++|||.+.... .+.. ......+...++-. ..+. ..-....++|...+..
T Consensus 278 ~~~~~~a~~~al~~Agi~~~did~i~~hgtgt~~~D~~E~~al~~~f~~~~~~~~~~~v~s~k~~~Gh~~~aag~~~l~~ 357 (421)
T cd00833 278 GEAQAALIRRAYARAGVDPSDIDYVEAHGTGTPLGDPIEVEALAKVFGGSRSADQPLLIGSVKSNIGHLEAAAGLAGLIK 357 (421)
T ss_pred HHHHHHHHHHHHHHhCCCHHHCcEEEeeCCCCCCCCHHHHHHHHHHHhccCCCCCceeeecCcCccccchhhhHHHHHHH
Confidence 44556899999999999999999886533 2221 11112233333221 1111 1123456777888888
Q ss_pred HHHHHHcC-CCeE
Q psy13271 78 AKQFIESG-SDCT 89 (110)
Q Consensus 78 A~~~i~sG-~~~v 89 (110)
+...++.| ..-.
T Consensus 358 ~~~~l~~~~ip~~ 370 (421)
T cd00833 358 VVLALEHGVIPPN 370 (421)
T ss_pred HHHHHhcCCcCCc
Confidence 88889988 5443
No 188
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=88.90 E-value=1.6 Score=30.91 Aligned_cols=77 Identities=19% Similarity=0.206 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCCCCee-eE----eccchHHHHHHHHHHHHHHcC---
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIPVF-NV----NNNCSTGSSALMLAKQFIESG--- 85 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~~~~~-~i----~~~C~sg~~al~~A~~~i~sG--- 85 (110)
..++++++|+++|++++|||.++..... ...-..++..+|++.-... .+ +.++++-...|. ++++.|
T Consensus 221 ~~~~i~~~l~~~g~~~~di~~~~~h~~~--~~~~~~~~~~lg~~~~~~~~~~~~~Gn~~~a~~~~~L~---~~~~~g~~~ 295 (319)
T PRK09352 221 LAKVAREALEAAGLTPEDIDWLVPHQAN--LRIIDATAKKLGLPMEKVVVTVDKYGNTSAASIPLALD---EAVRDGRIK 295 (319)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEECCCC--HHHHHHHHHHhCCCHHHhhhhHHhhCCHHHHHHHHHHH---HHHHcCCCC
Confidence 4567888999999999999998874321 1122356677787521111 12 233344444443 344443
Q ss_pred -CCeEEEEeec
Q psy13271 86 -SDCTLALGFE 95 (110)
Q Consensus 86 -~~~vlv~g~e 95 (110)
-|.+++++.-
T Consensus 296 ~Gd~vll~s~G 306 (319)
T PRK09352 296 RGDLVLLEGFG 306 (319)
T ss_pred CCCEEEEEEEc
Confidence 3677776653
No 189
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=88.74 E-value=3.6 Score=29.09 Aligned_cols=75 Identities=17% Similarity=0.013 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchh---HHHHHcCCCCCCee----eE-eccchHHHHHHHHHHHHH
Q psy13271 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQ---RALYQIGMTGIPVF----NV-NNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~---~~a~~lg~~~~~~~----~i-~~~C~sg~~al~~A~~~i 82 (110)
.+...++++++|+++|++++|||.++............ .....++..+.+.. .+ +..++++...+..+....
T Consensus 204 ~~~~~~~i~~al~~agl~~~did~~~~h~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~G~~~aas~~~~l~~~~~~~ 283 (332)
T cd00825 204 AEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKELKLLRSEFGDKSPAVSATKAMTGNLSSAAVVLAVDEAVLML 283 (332)
T ss_pred HHHHHHHHHHHHHHcCCCHhHCCEEEccCCCCCCCCHHHHHHHHHHhCCCCceeECCCcccccchhHhHHHHHHHHHHHH
Confidence 34566789999999999999999988755432221111 11122332111111 22 467778888888887777
Q ss_pred HcC
Q psy13271 83 ESG 85 (110)
Q Consensus 83 ~sG 85 (110)
+.+
T Consensus 284 ~~~ 286 (332)
T cd00825 284 EHG 286 (332)
T ss_pred hcC
Confidence 766
No 190
>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=88.66 E-value=1.5 Score=32.43 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHcCCCccccCeEEEE-eecC--CCcchhHHHHHcCCC-----CCCeeeE-----eccchHHHHHHHH
Q psy13271 11 PELAKEALIKALDDAGISINQVQQACCG-YVYG--DSTCGQRALYQIGMT-----GIPVFNV-----NNNCSTGSSALML 77 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~~id~vi~~-~~~~--~~~~~~~~a~~lg~~-----~~~~~~i-----~~~C~sg~~al~~ 77 (110)
......+++++|+++|+.++|||.+... +.+. +......+...+|.. ..+...+ ....++|+..+..
T Consensus 278 ~~~~~~a~~~al~~Agl~~~dId~i~~h~tgt~~~d~~E~~al~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~ 357 (424)
T smart00825 278 GPAQARLIRQALARAGVDPADVDYVEAHGTGTPLGDPIEAEALAAVFGQGRPRDGPLLLGSVKSNIGHLEAAAGVAGLIK 357 (424)
T ss_pred HHHHHHHHHHHHHHhCCCHHHccEEEeeCCCCCCCCHHHHHHHHHHHhccCCCCCceEEeccccccCCcccchhHHHHHH
Confidence 3455678999999999999999988654 3322 111112333444421 1122111 3446677777877
Q ss_pred HHHHHHcC-CCeE
Q psy13271 78 AKQFIESG-SDCT 89 (110)
Q Consensus 78 A~~~i~sG-~~~v 89 (110)
+...++.| ..-.
T Consensus 358 ~~~~l~~~~ip~~ 370 (424)
T smart00825 358 VVLALRHGTIPPT 370 (424)
T ss_pred HHHHHhCCCCCCC
Confidence 88888888 5443
No 191
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=87.76 E-value=2.6 Score=30.97 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhH--HHHHcCCCCCCee------eE-eccchHHHHHHHHHHHHHHc
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQR--ALYQIGMTGIPVF------NV-NNNCSTGSSALMLAKQFIES 84 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~--~a~~lg~~~~~~~------~i-~~~C~sg~~al~~A~~~i~s 84 (110)
...+++++|+++|++++|||.+-+- +.+.... ..+.||+...|.. .. +...++|+..+..+...++-
T Consensus 287 ~~~a~~~a~~~Agi~~~did~~e~~----d~f~~~~~~~~e~lg~~~~pvn~~GG~l~~Gh~~gasG~~~~~e~~~qL~g 362 (386)
T cd00751 287 PVPAIPKALKRAGLTLDDIDLIEIN----EAFAAQALACLKELGLDPEKVNVNGGAIALGHPLGASGARIVVTLLHELKR 362 (386)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEee----chhHHHHHHHHHHhCCChhhcCCCcchHhhCccHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999999987653 2222222 2345665321211 11 23445666677677777775
Q ss_pred C-CCeEEEE
Q psy13271 85 G-SDCTLAL 92 (110)
Q Consensus 85 G-~~~vlv~ 92 (110)
. .++.|+.
T Consensus 363 ~~~~~gl~~ 371 (386)
T cd00751 363 RGGRYGLAT 371 (386)
T ss_pred cCCCEEEEE
Confidence 4 6666543
No 192
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=87.64 E-value=0.9 Score=32.97 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCC
Q psy13271 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT 57 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~ 57 (110)
..+..++++++|++++++++|||.++.... ....-..+++.+|++
T Consensus 222 v~~~~~~~~~~L~~~~l~~~dId~~vpHQa--n~ri~~~i~~~l~~~ 266 (323)
T COG0332 222 VRAMPKAIEEVLEKAGLTPEDIDWFVPHQA--NLRIIEAIAKKLGIP 266 (323)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEccccc--cHHHHHHHHHHcCCC
Confidence 346677889999999999999999986432 112234567888884
No 193
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=87.43 E-value=1.4 Score=30.89 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchh----HHHHHcCC-CCCCeeeEec
Q psy13271 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQ----RALYQIGM-TGIPVFNVNN 66 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~----~~a~~lg~-~~~~~~~i~~ 66 (110)
.+.....++++|++++++++|||.|.++..- +.+.+- ..++.|.+ .++|.+.++.
T Consensus 30 ~~~L~~~i~~~l~~~~~~~~did~iavt~GP-GsftgLrvG~~~Ak~La~~~~~Pli~v~~ 89 (268)
T PF00814_consen 30 SENLPPLIEELLKEAGISLSDIDAIAVTRGP-GSFTGLRVGLSFAKGLALALNIPLIGVSH 89 (268)
T ss_dssp HHHHHHHHHHHHHHHTS-GGGESEEEEEEES-S-HHHHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEecCC-CcccccHHHHHHHHHHHHHhCCCeEeecc
Confidence 4566778899999999999999999987653 333232 22333222 2457777753
No 194
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=87.26 E-value=4 Score=30.37 Aligned_cols=74 Identities=20% Similarity=0.187 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHH--HHHcCCCC---CCeeeE--------eccchHHHHHHHHHHH
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRA--LYQIGMTG---IPVFNV--------NNNCSTGSSALMLAKQ 80 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~--a~~lg~~~---~~~~~i--------~~~C~sg~~al~~A~~ 80 (110)
...|++++|+++|++++|||.+-+.. .+....+ .+.||+.. .+ +.+ +...++|..-+..+..
T Consensus 300 ~~~a~~~al~~Agl~~~Did~~ei~d----~f~~~~l~~~e~lg~~~~~~~~-vN~~GG~la~Ghp~gatG~~~v~e~~~ 374 (404)
T PRK06205 300 PVPATEKALARAGLTLDDIDLIELNE----AFAAQVLAVLKEWGFGADDEER-LNVNGSGISLGHPVGATGGRILATLLR 374 (404)
T ss_pred HHHHHHHHHHHcCCCHHHCCEeeecc----HHHHHHHHHHHHhCcCcccCCC-cCCCCCHHhhCCChhhhHHHHHHHHHH
Confidence 46789999999999999999886532 2222222 24466522 11 111 1234556666666666
Q ss_pred HHHcC-CCeEEEE
Q psy13271 81 FIESG-SDCTLAL 92 (110)
Q Consensus 81 ~i~sG-~~~vlv~ 92 (110)
.++.. .++.|+.
T Consensus 375 qL~~~~~~~gl~~ 387 (404)
T PRK06205 375 ELQRRQARYGLET 387 (404)
T ss_pred HHHhcCCCeEEEE
Confidence 66655 6666654
No 195
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=87.24 E-value=4.1 Score=30.24 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHH--HHcCCCCCCee------eE-eccchHHHHHHHHHHHHHH
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRAL--YQIGMTGIPVF------NV-NNNCSTGSSALMLAKQFIE 83 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a--~~lg~~~~~~~------~i-~~~C~sg~~al~~A~~~i~ 83 (110)
-...+++++|+++|++++|||.+-+. +.+..+.+. +.||+...|.. .. +...++|..-+..+...++
T Consensus 290 ~~~~a~~~al~~agl~~~did~~ei~----d~f~~~~l~~~e~lg~~~~~vN~~GG~~a~Ghp~gasG~~~~~el~~qL~ 365 (391)
T PRK07661 290 GPIAAIPKALKLAGLELSDIGLFELN----EAFASQSIQVIRELGLDEEKVNVNGGAIALGHPLGCTGAKLTLSLIHEMK 365 (391)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEeC----CHHHHHHHHHHHHcCCCCCCCCCCCChHHhCCcHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999998753 333333333 45776321111 11 2234455555555555554
Q ss_pred -cCCCeEE
Q psy13271 84 -SGSDCTL 90 (110)
Q Consensus 84 -sG~~~vl 90 (110)
.|.++.|
T Consensus 366 ~~~~~~g~ 373 (391)
T PRK07661 366 RRNEQFGI 373 (391)
T ss_pred hcCCCeEE
Confidence 4444444
No 196
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=87.17 E-value=6.6 Score=29.09 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhH--HHHHcCCCCCCee------eE-eccchHHHHHHHHHHHHHH-
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQR--ALYQIGMTGIPVF------NV-NNNCSTGSSALMLAKQFIE- 83 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~--~a~~lg~~~~~~~------~i-~~~C~sg~~al~~A~~~i~- 83 (110)
...+++++|+++|++++|||.+-+. +.+.... ..+.||+...|.. .+ +...++|..-+..+...++
T Consensus 293 ~~~a~~~al~~agl~~~dId~~e~~----d~f~~~~~~~~e~lg~~~~~vn~~Gg~~a~GHp~gAsG~~~~~~l~~~l~~ 368 (393)
T PRK05656 293 PVSATRRCLDKAGWSLAELDLIEAN----EAFAAQSLAVGKELGWDAAKVNVNGGAIALGHPIGASGCRVLVTLLHEMIR 368 (393)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEec----CccHHHHHHHHHHhCCCCccCCcCCCHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999998753 2222222 2355776321111 11 1233445544544444444
Q ss_pred cCCCeEEEE
Q psy13271 84 SGSDCTLAL 92 (110)
Q Consensus 84 sG~~~vlv~ 92 (110)
.|.++.|+.
T Consensus 369 ~~~~~gl~~ 377 (393)
T PRK05656 369 RDAKKGLAT 377 (393)
T ss_pred cCCCEEEEE
Confidence 346666543
No 197
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=87.03 E-value=7.3 Score=26.31 Aligned_cols=82 Identities=18% Similarity=0.114 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHc-----CCCCCC----eee-EeccchHHHHHHHHHHH
Q psy13271 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQI-----GMTGIP----VFN-VNNNCSTGSSALMLAKQ 80 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~l-----g~~~~~----~~~-i~~~C~sg~~al~~A~~ 80 (110)
.+...++++++|+++|++++|||.++.......... .+...+ +....+ .-. =+..++++...+..+..
T Consensus 144 ~~~~~~~i~~~l~~ag~~~~did~~~~h~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~as~~~~l~~~~~ 221 (254)
T cd00327 144 GEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGD--AVELALGLDPDGVRSPAVSATLIMTGHPLGAAGLAILDELLL 221 (254)
T ss_pred hHHHHHHHHHHHHHcCCCHHHCCEEEccCCcCcccc--HHHHHHHHHHhCCCCCceeccccccccchHHHHHHHHHHHHH
Confidence 456678899999999999999999877543222111 122222 221001 112 24577778888877777
Q ss_pred HHHcC--------CCeEEEEee
Q psy13271 81 FIESG--------SDCTLALGF 94 (110)
Q Consensus 81 ~i~sG--------~~~vlv~g~ 94 (110)
..+.+ .+++++.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~ 243 (254)
T cd00327 222 MLEHEFIPPTPREPRTVLLLGF 243 (254)
T ss_pred HHhCCCcCCCCCCcCEEEEeeE
Confidence 66642 355655544
No 198
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=86.99 E-value=1.4 Score=29.47 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHHHcCCCccccCeEEEEeec
Q psy13271 8 TDYPELAKEALIKALDDAGISINQVQQACCGYVY 41 (110)
Q Consensus 8 ~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~ 41 (110)
..-.+.....++++|++++++++|||.+.++..-
T Consensus 31 ~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~~GP 64 (202)
T TIGR03725 31 RNHSEILLPMIEELLAEAGLSLQDLDAIAVGVGP 64 (202)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 3455677778899999999999999999987653
No 199
>PRK08242 acetyl-CoA acetyltransferase; Validated
Probab=86.80 E-value=4.1 Score=30.41 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCccccCeEEEEeecCCCcchhH--HHHHcCCC
Q psy13271 15 KEALIKALDDAGISINQVQQACCGYVYGDSTCGQR--ALYQIGMT 57 (110)
Q Consensus 15 ~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~--~a~~lg~~ 57 (110)
..|++++|+++|++++|||.+=+. +.+..+. ..+.||+.
T Consensus 303 ~~a~~~al~~AGl~~~DID~~ei~----daFa~~~l~~~e~lG~~ 343 (402)
T PRK08242 303 VPATRKALAKAGLTVDDIDLFELN----EAFASVVLRFMQALDIP 343 (402)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEec----chhhHHHHHHHHHhCCC
Confidence 468999999999999999988653 3333332 23567764
No 200
>KOG1394|consensus
Probab=86.67 E-value=0.62 Score=34.44 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEE
Q psy13271 13 LAKEALIKALDDAGISINQVQQACC 37 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~ 37 (110)
=+..++.++|+++|+.|+|||.|-.
T Consensus 302 Ga~~am~raL~~Agl~pe~i~YvNA 326 (440)
T KOG1394|consen 302 GAVLAMERALKDAGLSPEDIDYVNA 326 (440)
T ss_pred hHHHHHHHHHHHcCCChhhcCeeec
Confidence 4567889999999999999999853
No 201
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=86.56 E-value=5.1 Score=29.68 Aligned_cols=75 Identities=17% Similarity=0.058 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHH--HHHcCCCCCCee------eE-eccchHHHHHHHHHHHHHH
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRA--LYQIGMTGIPVF------NV-NNNCSTGSSALMLAKQFIE 83 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~--a~~lg~~~~~~~------~i-~~~C~sg~~al~~A~~~i~ 83 (110)
-...+++++|+++|++++|||.+=+... +....+ .+.+|+...|.. .. ....++|+..+..+...++
T Consensus 286 ~~~~a~~~al~~agl~~~did~~ei~d~----F~~~~l~~~e~lg~~~~pvN~~GG~la~Ghp~gatG~~~v~e~~~qL~ 361 (387)
T PRK07850 286 GPVQATAKVLEKAGMKIGDIDLVEINEA----FASVVLSWAQVHEPDMDKVNVNGGAIALGHPVGSTGARLITTALHELE 361 (387)
T ss_pred hHHHHHHHHHHHcCCCHHHcCeeeeccc----chHHHHHHHHHcCCCCCCcCCCCchhhcCCCcchhHHHHHHHHHHHHH
Confidence 3468999999999999999998866332 222222 245665321211 11 2344567777776777776
Q ss_pred cC-CCeEEE
Q psy13271 84 SG-SDCTLA 91 (110)
Q Consensus 84 sG-~~~vlv 91 (110)
.. .++.|+
T Consensus 362 ~~~~~~g~~ 370 (387)
T PRK07850 362 RTDKSTALI 370 (387)
T ss_pred hcCCCeEEE
Confidence 54 555554
No 202
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=86.16 E-value=5.5 Score=29.51 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhH--HHHHcCCCCCCe------eeE-eccchHHHHHHHHHHHHHHc
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQR--ALYQIGMTGIPV------FNV-NNNCSTGSSALMLAKQFIES 84 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~--~a~~lg~~~~~~------~~i-~~~C~sg~~al~~A~~~i~s 84 (110)
...+++++|+++|++++|||.+=+-.. +.... ..+.||+...|. ... +...++|..-+..+...++.
T Consensus 294 ~~~a~~~al~~Agl~~~dId~~e~~d~----f~~~~l~~~e~lg~~~~~vN~~GG~la~Ghp~gatG~~~v~e~~~qL~~ 369 (394)
T PRK06445 294 PVPASKKALEKAGLSVKDIDLWEINEA----FAVVVLYAIKELGLDPETVNIKGGAIAIGHPLGATGARIVGTLARQLQI 369 (394)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEeccc----chHHHHHHHHHhCCCccccCCCCCHHHcCCCccchHHHHHHHHHHHHHh
Confidence 467899999999999999998865332 22222 235567642121 111 22344555556555666654
Q ss_pred C-CCeEEEE
Q psy13271 85 G-SDCTLAL 92 (110)
Q Consensus 85 G-~~~vlv~ 92 (110)
. .++.|+.
T Consensus 370 ~~~~~gl~~ 378 (394)
T PRK06445 370 KGKDYGVAT 378 (394)
T ss_pred cCCCEEEEE
Confidence 4 6666644
No 203
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=85.91 E-value=5.6 Score=29.42 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEE
Q psy13271 14 AKEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~ 38 (110)
...|++++|+++|++++|||.+=+.
T Consensus 287 ~~~A~~~al~~Agl~~~DiDv~Ei~ 311 (388)
T PRK06366 287 PIPATRKLLEKQNKSIDYYDLVEHN 311 (388)
T ss_pred HHHHHHHHHHHcCCCHHHcceeecc
Confidence 3689999999999999999987553
No 204
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=85.72 E-value=4.8 Score=29.88 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEE
Q psy13271 13 LAKEALIKALDDAGISINQVQQACC 37 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~ 37 (110)
-...+++++|+++|++++|||.+=+
T Consensus 296 ~~~~a~~~al~~agl~~~Did~~ei 320 (397)
T PRK06954 296 APVGAIRKLFEKNGWRAAEVDLFEI 320 (397)
T ss_pred hHHHHHHHHHHHcCCCHHHCCEEeh
Confidence 3467899999999999999999843
No 205
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=85.29 E-value=5.8 Score=28.94 Aligned_cols=76 Identities=7% Similarity=0.059 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCC--CCeeeEeccchHHHHHHHHH-HHHHHcC-CCeEE
Q psy13271 15 KEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTG--IPVFNVNNNCSTGSSALMLA-KQFIESG-SDCTL 90 (110)
Q Consensus 15 ~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~--~~~~~i~~~C~sg~~al~~A-~~~i~sG-~~~vl 90 (110)
..+++++|+++|++++|||.+++-.. ....-..+.+.||+.. .+...+..-..++...+-.+ .+.+..| .+.+|
T Consensus 245 ~~~i~~~L~~~gl~~~did~~v~HQ~--~~~i~~~i~~~Lgl~~ek~~~~~l~~~GNtssasip~~L~~~~~~~~~~~ll 322 (353)
T PRK12880 245 PKSFKEILEFSKVDEKDIAFHLFHQS--NAYLVDCIKEELKLNDDKVPNFIMEKYANLSACSLPALLCELDTPKEFKASL 322 (353)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEECCC--CHHHHHHHHHHhCCCHHHhhhhhHHhhCCHHHHHHHHHHHHHHHcCCcEEEE
Confidence 45788999999999999999987432 1122345677888853 22122232222333333222 3445677 77444
Q ss_pred EE
Q psy13271 91 AL 92 (110)
Q Consensus 91 v~ 92 (110)
+.
T Consensus 323 ~~ 324 (353)
T PRK12880 323 SA 324 (353)
T ss_pred EE
Confidence 43
No 206
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=85.27 E-value=5.8 Score=24.59 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=31.0
Q ss_pred HHHHHHHcCCCccccCeEEEEeecCCC--cchhHHHHHcC-CCCCCeee
Q psy13271 18 LIKALDDAGISINQVQQACCGYVYGDS--TCGQRALYQIG-MTGIPVFN 63 (110)
Q Consensus 18 ~~~al~~agl~~~~id~vi~~~~~~~~--~~~~~~a~~lg-~~~~~~~~ 63 (110)
..+.+++.+++++||-.+++. .++|. .+|+.+++.+| +..+|.+.
T Consensus 26 l~~i~~~N~l~~edivSv~FT-~T~DL~a~FPA~aaR~~~~~~~Vplmc 73 (117)
T cd02185 26 LEEIIERNNIKPEDIISVIFT-VTPDLDAAFPAKAARELGGWKYVPLMC 73 (117)
T ss_pred HHHHHHHcCCCHHHEEEEEEE-eCCcccccChHHHHHhcCCCCCcceee
Confidence 345567789999999888874 44543 35778888885 44666554
No 207
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=85.18 E-value=4.7 Score=29.91 Aligned_cols=75 Identities=9% Similarity=0.082 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHH--HHHcCCCCCCee------eE-eccchHHHHHHHHHHHHHH
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRA--LYQIGMTGIPVF------NV-NNNCSTGSSALMLAKQFIE 83 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~--a~~lg~~~~~~~------~i-~~~C~sg~~al~~A~~~i~ 83 (110)
....|++++|+++|++++|||.+=+. +.+....+ .+.||+...|.. .. +...++|..-+..+...++
T Consensus 292 ~~~~a~~~al~~agl~~~did~~e~~----d~f~~~~l~~~e~lg~~~~pvN~~GG~la~Ghp~gasG~~~~~~l~~qL~ 367 (393)
T PRK08235 292 TPGYAINALLEKTGKTVEDIDLFEIN----EAFAAVALASTEIAGIDPEKVNVNGGAVALGHPIGASGARIIVTLIHELK 367 (393)
T ss_pred hHHHHHHHHHHHhCCCHHHCCeehhc----chhHHHHHHHHHHhCCCcccCCcCCchHHhCCcHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999988542 33333332 355776421211 11 2234555555555566665
Q ss_pred cC-CCeEEE
Q psy13271 84 SG-SDCTLA 91 (110)
Q Consensus 84 sG-~~~vlv 91 (110)
.. .++.++
T Consensus 368 ~~~~~~g~~ 376 (393)
T PRK08235 368 RRGGGIGIA 376 (393)
T ss_pred hcCCCeEEE
Confidence 33 445443
No 208
>PRK07851 acetyl-CoA acetyltransferase; Provisional
Probab=84.74 E-value=5.3 Score=29.78 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCCccccCeEE
Q psy13271 14 AKEALIKALDDAGISINQVQQAC 36 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi 36 (110)
...+++++|+++|++++|||.+=
T Consensus 305 ~~~a~~~al~~Agi~~~did~~e 327 (406)
T PRK07851 305 PVEASKQALARAGMSIDDIDLVE 327 (406)
T ss_pred HHHHHHHHHHHhCCCHHHCCeeh
Confidence 45789999999999999999883
No 209
>PF09887 DUF2114: Uncharacterized protein conserved in archaea (DUF2114); InterPro: IPR008303 There are currently no experimental data for members of this group or their homologues. The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=84.37 E-value=1.5 Score=32.54 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcc-ccCeEEEEee
Q psy13271 6 EDTDYPELAKEALIKALDDAGISIN-QVQQACCGYV 40 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~-~id~vi~~~~ 40 (110)
..++..+|..+...+++++++++.+ |+|.|+-++.
T Consensus 63 TrEsV~elVrdtl~e~~k~A~l~i~~DL~FVVRSTG 98 (448)
T PF09887_consen 63 TRESVAELVRDTLLESHKKAHLDIKKDLDFVVRSTG 98 (448)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecc
Confidence 4577889999999999999999987 9999887653
No 210
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=84.23 E-value=8 Score=28.46 Aligned_cols=74 Identities=18% Similarity=0.138 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCCccccCeEEEEeecCCCcchhH--HHHHcCCCCCCeee----E---eccchHHHHHHHHHHHHHHcC
Q psy13271 15 KEALIKALDDAGISINQVQQACCGYVYGDSTCGQR--ALYQIGMTGIPVFN----V---NNNCSTGSSALMLAKQFIESG 85 (110)
Q Consensus 15 ~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~--~a~~lg~~~~~~~~----i---~~~C~sg~~al~~A~~~i~sG 85 (110)
..+++++++++|+.++|||.+=+- +.+.... ..+.+|+.+.|... + ....++|..-+......++..
T Consensus 283 ~~a~~~a~~~agi~~~did~~e~~----d~Fa~~~~~~~e~lG~~~~pvN~~GG~l~~Ghp~gasG~~~~~e~~~qL~~~ 358 (382)
T PRK07801 283 IPATRYALEKTGLSIDDIDVVEIN----EAFAPVVLAWLKETGADPAKVNPNGGAIALGHPLGATGAKLMTTLLHELERT 358 (382)
T ss_pred HHHHHHHHHHcCCCHHHcCEeeec----ccchHHHHHHHHHhCCCchhcCCCcchhhhcCcHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999988442 2222222 23457764322211 1 123456666666666666543
Q ss_pred -CCeEEEE
Q psy13271 86 -SDCTLAL 92 (110)
Q Consensus 86 -~~~vlv~ 92 (110)
.++.|+.
T Consensus 359 ~~~~gl~~ 366 (382)
T PRK07801 359 GGRYGLQT 366 (382)
T ss_pred CCCEEEEE
Confidence 5565543
No 211
>PRK06158 thiolase; Provisional
Probab=83.32 E-value=4.4 Score=29.88 Aligned_cols=26 Identities=19% Similarity=0.101 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEE
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~ 38 (110)
-...+++++++++|++++|||.+=+-
T Consensus 255 ~~~~aa~~A~~~AGi~p~DId~~Ely 280 (384)
T PRK06158 255 AAAESGPRAFAMAGLTPADIDVVELY 280 (384)
T ss_pred HHHHHHHHHHHHcCCCHHHCcEEEec
Confidence 34678999999999999999987554
No 212
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=83.28 E-value=5.5 Score=29.96 Aligned_cols=65 Identities=26% Similarity=0.339 Sum_probs=35.1
Q ss_pred CCHHHHHHHHH----HHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCC-CCCC---eeeEeccchHHHH
Q psy13271 8 TDYPELAKEAL----IKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGM-TGIP---VFNVNNNCSTGSS 73 (110)
Q Consensus 8 ~~~~~l~~~a~----~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~-~~~~---~~~i~~~C~sg~~ 73 (110)
.+..+++.-|+ +-+|+++|++++|||.|+++..++.+..+ .-+..+|+ +..+ ...+.|+.-.|..
T Consensus 300 Ir~~qlAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~-~~a~~iGLlP~~~~~kv~~~GN~al~GA~ 372 (412)
T PF14574_consen 300 IREFQLAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDP-ESAIRIGLLPDVPAEKVRFVGNAALAGAR 372 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEH-HHHHHTTSS--S-GGGEEEEC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCH-HHHhhcCCCCCccccCEEEECcHHHHHHH
Confidence 34455665554 45678999999999999999888777544 33456777 3322 3334454444433
No 213
>PLN02644 acetyl-CoA C-acetyltransferase
Probab=82.89 E-value=6.6 Score=29.11 Aligned_cols=73 Identities=19% Similarity=0.158 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCCccccCeEEEEeecCCCcchhH--HHHHcCCCCCCee------eE-eccchHHHHHHHHHHHHHHcC
Q psy13271 15 KEALIKALDDAGISINQVQQACCGYVYGDSTCGQR--ALYQIGMTGIPVF------NV-NNNCSTGSSALMLAKQFIESG 85 (110)
Q Consensus 15 ~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~--~a~~lg~~~~~~~------~i-~~~C~sg~~al~~A~~~i~sG 85 (110)
..+++++|+++|++++|||.+=+. +.+.... ..+.+|+...|.. .. ....++|...+......++..
T Consensus 294 ~~a~~~al~~Agi~~~Did~~Ei~----d~f~~~~l~~~e~lg~~~~~vN~~GG~l~~Ghp~gasG~~~~~~~~~~l~~~ 369 (394)
T PLN02644 294 ALAIPKALKHAGLEASQVDYYEIN----EAFSVVALANQKLLGLDPEKVNVHGGAVSLGHPIGCSGARILVTLLGVLRSK 369 (394)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEeC----cHHHHHHHHHHHHhCCCccccCCCCChHhhCCCHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999988653 2222222 2345676321211 11 233556666665556666543
Q ss_pred -CCeEEE
Q psy13271 86 -SDCTLA 91 (110)
Q Consensus 86 -~~~vlv 91 (110)
.++.|+
T Consensus 370 ~~~~g~~ 376 (394)
T PLN02644 370 NGKYGVA 376 (394)
T ss_pred CCCeEEE
Confidence 555554
No 214
>PRK09604 UGMP family protein; Validated
Probab=82.39 E-value=8.4 Score=27.93 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHcCCCccccCeEEEEee
Q psy13271 11 PELAKEALIKALDDAGISINQVQQACCGYV 40 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~~id~vi~~~~ 40 (110)
.+.....++++|++++++++|||.|.++..
T Consensus 52 ~~~l~~~i~~~L~~~~~~~~did~iavt~G 81 (332)
T PRK09604 52 VENIVPLIEEALKEAGLTLEDIDAIAVTAG 81 (332)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 456677789999999999999999998654
No 215
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=82.26 E-value=2.2 Score=30.45 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHcCCCccccCeEEEEee
Q psy13271 11 PELAKEALIKALDDAGISINQVQQACCGYV 40 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~~id~vi~~~~ 40 (110)
.+.....++++|++++++++|||.|.++..
T Consensus 49 ~~~l~~~i~~~l~~~~~~~~did~iav~~G 78 (305)
T TIGR00329 49 AENIPPLLERALIESNVDKSEIDLIAYTQG 78 (305)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 456677789999999999999999998654
No 216
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=81.98 E-value=8.1 Score=28.71 Aligned_cols=43 Identities=21% Similarity=0.168 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhH--HHHHcCCCC
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQR--ALYQIGMTG 58 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~--~a~~lg~~~ 58 (110)
.....|++++|+++|++++|||.+=+.. .+.... ..+.||+..
T Consensus 288 ~~~~~a~~~a~~~agl~~~Did~~Ei~d----~Fa~~~l~~~e~lG~~~ 332 (390)
T PRK06504 288 EAPLPATERALKKAGMKIDDIDLYEVNE----AFASVPLAWLKATGADP 332 (390)
T ss_pred ccHHHHHHHHHHHcCCCHHHCCEEEecc----cchHHHHHHHHHhCCCC
Confidence 3445689999999999999999885532 222222 235678753
No 217
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=81.50 E-value=7.1 Score=29.06 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEE
Q psy13271 13 LAKEALIKALDDAGISINQVQQACC 37 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~ 37 (110)
....+++++|+++|++++|||.+-+
T Consensus 291 ~~~~a~~~Al~~AGl~p~DID~~ei 315 (392)
T PRK06633 291 APVPASQKALSKAGWSVNDLEVIEV 315 (392)
T ss_pred HHHHHHHHHHHHcCCCHHHcCeeeh
Confidence 3467899999999999999998864
No 218
>PRK08256 lipid-transfer protein; Provisional
Probab=81.26 E-value=7.7 Score=28.63 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEE
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~ 38 (110)
....+++++|+++|++++|||.+-+-
T Consensus 265 ~~~~a~~~a~~~ag~~~~DiD~~ei~ 290 (391)
T PRK08256 265 MTRAAAQQVYEQAGIGPEDIDVVELH 290 (391)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEeec
Confidence 34579999999999999999987654
No 219
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=81.20 E-value=5.7 Score=28.79 Aligned_cols=80 Identities=15% Similarity=0.061 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHc--CCCccccCeEEEEeecCCCcchhHHHHHcCCCCCCe----eeE----eccchHHHHHHHHHHHHH
Q psy13271 13 LAKEALIKALDDA--GISINQVQQACCGYVYGDSTCGQRALYQIGMTGIPV----FNV----NNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 13 l~~~a~~~al~~a--gl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~~~~----~~i----~~~C~sg~~al~~A~~~i 82 (110)
...++++++|+++ |++++|||.+++-... ...-..+.+.+|+..... ..+ ++++++-..+|..+.+.-
T Consensus 260 ~~~~~i~~~L~~~~~g~~~~did~~~~H~~~--~~i~~~v~~~lgl~~~~~~~s~~~l~~~GN~~sasi~~~L~~~~~~g 337 (361)
T cd00831 260 NLERVLRKLLARLGIGLFKLAFDHWCVHPGG--RAVLDAVEKALGLSPEDLEASRMVLRRYGNMSSSSVLYVLAYMEAKG 337 (361)
T ss_pred HHHHHHHHHhccccCCCccccceEEEECCCC--hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCchhccHHHHHHHHHHhC
Confidence 4556788899999 9999999988874331 122345677788853111 112 345555555666555432
Q ss_pred HcC-CCeEEEEee
Q psy13271 83 ESG-SDCTLALGF 94 (110)
Q Consensus 83 ~sG-~~~vlv~g~ 94 (110)
+-. -+.+++++.
T Consensus 338 ~~~~Gd~vll~~~ 350 (361)
T cd00831 338 RVKRGDRGLLIAF 350 (361)
T ss_pred CCCCCCEEEEEEE
Confidence 222 367776665
No 220
>PRK08304 stage V sporulation protein AD; Validated
Probab=80.59 E-value=17 Score=26.65 Aligned_cols=88 Identities=15% Similarity=0.237 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHH----HHcCC--C------CCCeee--------Eeccch-HHH
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRAL----YQIGM--T------GIPVFN--------VNNNCS-TGS 72 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a----~~lg~--~------~~~~~~--------i~~~C~-sg~ 72 (110)
+.+.+..-|+|.|.+|++-|.|+.|-... .+..+. ..-|+ . +...|+ =..||+ |..
T Consensus 210 a~dti~~h~~d~~~~~~~yDli~tGDlg~---vG~~i~~~ll~~~g~~~~~~~~DcG~~iy~~~~q~~~aGgSGc~csa~ 286 (337)
T PRK08304 210 AADTIQQHFKDTGRSPEDYDLIVTGDLGR---VGREILKELLKEEGYDIGDNYNDCGLMIYDSEQQDVFAGGSGCACSAV 286 (337)
T ss_pred HHHHHHHHHHHcCCChhhccEEEEcchHH---HHHHHHHHHHHHhCCChhhcccccCeEEeccCCCcccCCCcccchhHH
Confidence 45667788999999999999999874311 122221 11111 1 111221 123332 223
Q ss_pred HHHHHHHHHHHcC-CCeEEEEeecc-CCCCCCCC
Q psy13271 73 SALMLAKQFIESG-SDCTLALGFEK-MEKGSLGA 104 (110)
Q Consensus 73 ~al~~A~~~i~sG-~~~vlv~g~e~-~s~~~~~~ 104 (110)
..-.+-...++.| .+++|+++.-. +|+..+..
T Consensus 287 v~~~~~~~~~~~g~~~rvl~v~tGaLls~~s~~q 320 (337)
T PRK08304 287 VTYGYLLKELQKGKLKRVLVVATGALLSPTSSQQ 320 (337)
T ss_pred HHHHHHHHHHhcCCceEEEEEEchhhcCcchhcc
Confidence 3446668899999 99999998777 56655443
No 221
>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]
Probab=80.51 E-value=10 Score=28.24 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCC-----C-CCee-eE-eccchHHHHHHHHHHH
Q psy13271 9 DYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT-----G-IPVF-NV-NNNCSTGSSALMLAKQ 80 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~-----~-~~~~-~i-~~~C~sg~~al~~A~~ 80 (110)
........|.++.+++.|+.++|.|.+++-..++ -.+..+++.++.+ + .... .+ +..|+|...+|.....
T Consensus 206 ~Y~~~~~~a~~~~~~k~gls~~dfdy~vfH~P~~--k~~~ka~k~l~~~~e~v~~~l~~~~~vGN~YtgS~~L~Las~L~ 283 (377)
T COG3425 206 AYFKHVENAAKGYMEKTGLSPDDFDYIVFHQPNG--KFPKKAAKSLGFKEEQVKPGLVYPQRIGNTYTGSLLLGLASLLD 283 (377)
T ss_pred HHHHHHHHHHHHHHHHhCCChhhhCeEEecCCCC--chHHHHHHHhCccHhhcCccchhhhhcCcccchhHHHHHHHHHh
Confidence 3445667888999999999999999999865433 2345666666553 1 1111 23 4677777777766555
Q ss_pred HHH-cCCCeEEEEee
Q psy13271 81 FIE-SGSDCTLALGF 94 (110)
Q Consensus 81 ~i~-sG~~~vlv~g~ 94 (110)
... . -|+++++.-
T Consensus 284 ~a~~~-G~rIl~~SY 297 (377)
T COG3425 284 NAKLP-GDRILLFSY 297 (377)
T ss_pred hcCCC-CCEEEEEee
Confidence 555 3 478887763
No 222
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=80.45 E-value=20 Score=26.28 Aligned_cols=88 Identities=15% Similarity=0.215 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHH----HH-----------cCC----CCCCeeeEeccchHH-HH
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRAL----YQ-----------IGM----TGIPVFNVNNNCSTG-SS 73 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a----~~-----------lg~----~~~~~~~i~~~C~sg-~~ 73 (110)
+.+.+.+-|+|.|.+|++-|.|+.|-... .+..+. +. .|+ ...+++.=..||+-. ..
T Consensus 204 a~dti~~h~~d~~~~~~~yd~i~tgdlg~---vg~~i~~~ll~~~g~~~~~~~~dcg~~iy~~~~~~~aggsgc~csa~v 280 (327)
T TIGR02845 204 AADTIEAHFKDTGRSVDDYDLIVTGDLAR---VGSEILRKLLKERGYDVTERYDDCGVMIYRPDQQVFAGGSGCACSAVV 280 (327)
T ss_pred HHHHHHHHHHHcCCChhhccEEEecchHH---HHHHHHHHHHHHcCCChhhccccCCeEEEcCCCcccCCCcccchhHHH
Confidence 45667788999999999999999874311 122221 11 121 011222223344322 33
Q ss_pred HHHHHHHHHHcC-CCeEEEEeecc-CCCCCCCC
Q psy13271 74 ALMLAKQFIESG-SDCTLALGFEK-MEKGSLGA 104 (110)
Q Consensus 74 al~~A~~~i~sG-~~~vlv~g~e~-~s~~~~~~ 104 (110)
--.+-...++.| .+++|++..-. +|+..+.+
T Consensus 281 ~~~~~~~~~~~g~~~r~l~v~tgalls~~s~~q 313 (327)
T TIGR02845 281 TYGHILKEMLRGKLKKVLVVATGALLSPTTFQQ 313 (327)
T ss_pred HHHHHHHHHhcCcceEEEEEEchhhcCcchhcc
Confidence 345668899999 99999998777 66665544
No 223
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=78.71 E-value=7.6 Score=29.15 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEe
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGY 39 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~ 39 (110)
-...+++++|+++|++++|||.+=+-.
T Consensus 310 ~~~~a~~~al~~AGl~~~DiD~~Ei~d 336 (428)
T PRK08963 310 GPAYATPLALERAGLTLADLTLIDMHE 336 (428)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEcc
Confidence 345788999999999999999876543
No 224
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=76.74 E-value=2.4 Score=30.84 Aligned_cols=28 Identities=25% Similarity=0.166 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEEe
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCGY 39 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~~ 39 (110)
.-...+++++|+++|++++|||.+=+-.
T Consensus 251 ~~~~~a~~~al~~Agl~~~did~~ei~d 278 (375)
T cd00829 251 DAARLAARRAYKMAGITPDDIDVAELYD 278 (375)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEecC
Confidence 3456799999999999999999886543
No 225
>PRK12578 acetyl-CoA acetyltransferase; Provisional
Probab=76.65 E-value=2.5 Score=31.11 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEE
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~ 38 (110)
-...|++++|+++|++++|||.+-+-
T Consensus 258 ~~~~a~~~al~~Agi~~~DiD~~ei~ 283 (385)
T PRK12578 258 ATQLAARQAYNMAKVTPNDIEVATVH 283 (385)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEec
Confidence 34579999999999999999987554
No 226
>PTZ00455 3-ketoacyl-CoA thiolase; Provisional
Probab=76.15 E-value=2.5 Score=31.89 Aligned_cols=27 Identities=30% Similarity=0.217 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEE
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~ 38 (110)
.....|++++++++|++++|||.+=+-
T Consensus 309 ~~~~~A~~~a~~~AGl~~~DiD~~Ei~ 335 (438)
T PTZ00455 309 FTSRAAAQKALSMAGVKPSDLQVAEVH 335 (438)
T ss_pred hHHHHHHHHHHHHcCCCHHHCcEeeec
Confidence 345789999999999999999987554
No 227
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=75.78 E-value=6 Score=28.47 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCeEEEEee
Q psy13271 10 YPELAKEALIKALDDAGISINQVQQACCGYV 40 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id~vi~~~~ 40 (110)
-.+.....+.++|++++++.+|||.|.++..
T Consensus 49 H~~~l~~~i~~~l~~~~~~~~~id~iav~~G 79 (314)
T TIGR03723 49 HLEAIPPLIEEALAEAGLTLSDIDAIAVTAG 79 (314)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 3456677888999999999999999998654
No 228
>PRK07516 acetyl-CoA acetyltransferase; Provisional
Probab=75.71 E-value=2.5 Score=31.16 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEE
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~ 38 (110)
.-...+++++|+++|++++|||.+-+-
T Consensus 260 ~~~~~a~~~a~~~agl~~~did~~e~~ 286 (389)
T PRK07516 260 EGPRRAWQRALAQAGVTLDDLSFVETH 286 (389)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEe
Confidence 444579999999999999999988654
No 229
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Probab=75.67 E-value=2.7 Score=30.92 Aligned_cols=26 Identities=31% Similarity=0.156 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEE
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~ 38 (110)
-...+++++|+++|++++|||.+-+-
T Consensus 259 ~~~~a~~~al~~aGi~~~did~~e~~ 284 (389)
T PRK06064 259 AAVVAAEKAYKMAGIEPKDIDVAEVH 284 (389)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEec
Confidence 34578999999999999999988654
No 230
>PLN03169 chalcone synthase family protein; Provisional
Probab=75.20 E-value=14 Score=27.45 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCC
Q psy13271 15 KEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT 57 (110)
Q Consensus 15 ~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~ 57 (110)
...++++|+++|++++|+|.+.+.-..+....-..+.+.||+.
T Consensus 284 ~~~i~~~L~~~gl~~~did~~~~v~Hq~n~~il~~v~~~Lgl~ 326 (391)
T PLN03169 284 EGFCKKLMKKAGLVEKDYNDLFWAVHPGGPAILNRLEKKLKLA 326 (391)
T ss_pred HHHHHHHHHHcCCCCCCCCcceEEecCCCHHHHHHHHHHcCCC
Confidence 4456789999999999998443222212222234566788885
No 231
>PRK07855 lipid-transfer protein; Provisional
Probab=75.19 E-value=2.7 Score=31.05 Aligned_cols=26 Identities=8% Similarity=-0.023 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEE
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~ 38 (110)
....+++++++++|++++|||.+=+-
T Consensus 267 ~~~~aa~~a~~~AGi~~~DiDv~El~ 292 (386)
T PRK07855 267 EMGLVARQLWAQSGLGPADIDTAILY 292 (386)
T ss_pred hHHHHHHHHHHHcCCCHHHCcEEEec
Confidence 34579999999999999999987554
No 232
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=74.95 E-value=1.9 Score=31.93 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCCccccCeEE
Q psy13271 13 LAKEALIKALDDAGISINQVQQAC 36 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi 36 (110)
-...|++++|+++|++++|||.+-
T Consensus 291 ~~~~a~~~al~~agl~~~Did~~e 314 (392)
T PRK07108 291 GPVFAVPKLLKQAGLKVDDIDLWE 314 (392)
T ss_pred hHHHHHHHHHHHcCCCHHHcCchH
Confidence 346899999999999999999875
No 233
>KOG1406|consensus
Probab=74.95 E-value=3.9 Score=29.32 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHcCCCccccCeEEEEee
Q psy13271 11 PELAKEALIKALDDAGISINQVQQACCGYV 40 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~~id~vi~~~~ 40 (110)
.+|..++++++++++|+.|.||+.|=.-.+
T Consensus 271 fdm~~~aa~~l~aksgltpndvqvielhdc 300 (408)
T KOG1406|consen 271 FDMTRLAAKRLFAKSGLTPNDVQVIELHDC 300 (408)
T ss_pred chHHHHHHHHHHHHcCCCcccceEEEeecc
Confidence 468899999999999999999998765433
No 234
>PRK14878 UGMP family protein; Provisional
Probab=74.84 E-value=4.7 Score=29.12 Aligned_cols=28 Identities=39% Similarity=0.491 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEee
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGYV 40 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~~ 40 (110)
.....++++|+++|++++|||.|.++..
T Consensus 47 ~l~~~i~~~l~~a~~~~~did~Iavt~g 74 (323)
T PRK14878 47 VAPELLRKALEKAGISIEDIDAVAVSQG 74 (323)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 4557889999999999999999998654
No 235
>PRK12404 stage V sporulation protein AD; Provisional
Probab=74.80 E-value=21 Score=26.25 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHH----HH--cCC-C-------------CCCeeeEeccchH-HH
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRAL----YQ--IGM-T-------------GIPVFNVNNNCST-GS 72 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a----~~--lg~-~-------------~~~~~~i~~~C~s-g~ 72 (110)
+.+.+.+-|+|.|.+|++-|.|+.|-... .+..+. .. +.+ . ..+++.=..||+- ..
T Consensus 208 A~dti~~h~~d~~~~~~~yDlI~TGDLg~---vG~~i~~~ll~~~g~~~~~~~~~DCG~~iyd~~~~~~aGgSGcgcsA~ 284 (334)
T PRK12404 208 AVDTIEAHLRDRQIDASYYDLIVTGDLGH---VGREIAKDLLHKHGVKVPEEQFQDCGLLIYREGQPVIAGASGPGCSAT 284 (334)
T ss_pred HHHHHHHHHHHhCCChhhccEEEEcchHH---HHHHHHHHHHHHcCCCCCcccccccCeEEecCCCcccCCCcccchHHH
Confidence 45667788899999999999999874311 122222 11 111 0 1122222233432 23
Q ss_pred HHHHHHHHHHHcC-CCeEEEEeecc-CCCCCCCC
Q psy13271 73 SALMLAKQFIESG-SDCTLALGFEK-MEKGSLGA 104 (110)
Q Consensus 73 ~al~~A~~~i~sG-~~~vlv~g~e~-~s~~~~~~ 104 (110)
..-.+-...++.| .+++|++..-. +|+..+..
T Consensus 285 v~~g~~~~~~~~g~~~rvL~v~TGALlS~~s~~q 318 (334)
T PRK12404 285 VTYGHLLNRMKRGELKRILVVATGALLSPLSFQQ 318 (334)
T ss_pred HHHHHHHHHHhcCCceEEEEEEchhhcCcchhcc
Confidence 3446678899999 99999998777 56665544
No 236
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=74.71 E-value=16 Score=25.76 Aligned_cols=83 Identities=18% Similarity=0.132 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCC--CCCe-----ee-E-eccchHHHHHHHHHHHHH
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT--GIPV-----FN-V-NNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~--~~~~-----~~-i-~~~C~sg~~al~~A~~~i 82 (110)
+...++++++|++.+++ ++||.++...... +.....+.+.+++. .... +. + +.+|++-..++..+...-
T Consensus 223 ~~~~~~~~~~l~~~~~~-~~i~~~~~h~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Gn~~sa~~~~~L~~~~~~~ 300 (324)
T cd00827 223 KLIAKVVRKALDRAGLS-EDIDYFVPHQPNG-KKILEAVAKKLGGPPEKASQTRWILLRRVGNMYAASILLGLASLLESG 300 (324)
T ss_pred HHHHHHHHHHHHHcccc-cccceeeccCchH-HHHHHHHHHHccchHhhhccchhhHHHHhCchHHHHHHHHHHHHHhcC
Confidence 45677888999999999 9999877644321 02234566677763 1111 11 2 345555555555544322
Q ss_pred HcC-CCeEEEEeecc
Q psy13271 83 ESG-SDCTLALGFEK 96 (110)
Q Consensus 83 ~sG-~~~vlv~g~e~ 96 (110)
+-. -+.+++++...
T Consensus 301 ~~~~Gd~vl~~~~G~ 315 (324)
T cd00827 301 KLKAGDRVLLFSYGS 315 (324)
T ss_pred CCCCCCEEEEEEecc
Confidence 222 36777776543
No 237
>PRK06289 acetyl-CoA acetyltransferase; Provisional
Probab=74.64 E-value=2.9 Score=31.02 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEE
Q psy13271 14 AKEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~ 38 (110)
...|++++++++|++++|||.+-+-
T Consensus 278 ~~~aa~~a~~~Agi~~~Didv~el~ 302 (403)
T PRK06289 278 VRQAVLDAYRRAGVGLDDLDGFEVH 302 (403)
T ss_pred HHHHHHHHHHHcCCCHHHCeEEeee
Confidence 5679999999999999999987654
No 238
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=74.19 E-value=2.6 Score=31.26 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEE
Q psy13271 14 AKEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~ 38 (110)
...|++++|+++|++++|||.+=+-
T Consensus 271 ~~~A~~~al~~Agi~~~DID~~Ei~ 295 (393)
T cd00826 271 PIEAARKALEKAGLGIGDLDLIEAH 295 (393)
T ss_pred HHHHHHHHHHHcCCCHHHcCeeehh
Confidence 4789999999999999999987553
No 239
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=73.39 E-value=3.2 Score=31.12 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEE
Q psy13271 14 AKEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~ 38 (110)
...|++++|+++|++++|||.+=+.
T Consensus 309 ~~~a~~~al~~aGl~~~did~~ei~ 333 (426)
T PRK08170 309 PVHAATPLLQRHGLTLEDLDLWEIN 333 (426)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEec
Confidence 4579999999999999999987654
No 240
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=73.23 E-value=5.4 Score=28.71 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEee
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGYV 40 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~~ 40 (110)
.....++++|+++|++++|||.|.+...
T Consensus 48 ~l~~~i~~~l~~~~~~~~did~Iavt~g 75 (322)
T TIGR03722 48 VAPKLIKEALEEAGVSLEDIDAVAFSQG 75 (322)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 3455689999999999999999998653
No 241
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=73.18 E-value=35 Score=25.24 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHcCCC--ccccCeEEEE
Q psy13271 12 ELAKEALIKALDDAGIS--INQVQQACCG 38 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~--~~~id~vi~~ 38 (110)
.....+++++++++|++ ++|||.+=+-
T Consensus 255 ~~~~~a~~~a~~~Agi~~p~~Did~~el~ 283 (386)
T PRK08313 255 QAGRDAAAALWKAAGITDPRDEIDVAEIY 283 (386)
T ss_pred HHHHHHHHHHHHHcCCCCChhhCCEEEec
Confidence 45568999999999997 6999976543
No 242
>PRK06059 lipid-transfer protein; Provisional
Probab=72.73 E-value=3.8 Score=30.32 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEE
Q psy13271 14 AKEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~ 38 (110)
..++++++++++|++++|||.+=+-
T Consensus 275 ~~~a~~~a~~~agl~~~Did~~El~ 299 (399)
T PRK06059 275 KDQILDAAYAEAGIGPEDLSLAEVY 299 (399)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEeec
Confidence 3578999999999999999987553
No 243
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=71.49 E-value=3.2 Score=30.93 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEE
Q psy13271 13 LAKEALIKALDDAGISINQVQQACC 37 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~ 37 (110)
-...+++++|+++|++++|||.+=+
T Consensus 297 ~~~~a~~~a~~~agl~~~did~~ei 321 (401)
T PRK08131 297 GPVEAIKKALARAGLTLDDMDIIEI 321 (401)
T ss_pred hHHHHHHHHHHHcCCCHHHCCeehh
Confidence 3467899999999999999998864
No 244
>TIGR02445 fadA fatty oxidation complex, beta subunit FadA. This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli.
Probab=70.49 E-value=3.8 Score=30.30 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHH--HHcCCCC---CCee------eE-eccchHHHHHHHHHHHH
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRAL--YQIGMTG---IPVF------NV-NNNCSTGSSALMLAKQF 81 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a--~~lg~~~---~~~~------~i-~~~C~sg~~al~~A~~~ 81 (110)
...+++++|+++|++++|||.+=+. +.+....+. +.||+.+ .|.. .. +...+||...+....++
T Consensus 282 ~~~a~~~al~~AGi~p~DId~~Ei~----daFa~~~l~~~e~lg~~~~g~~~vN~~GG~la~GhP~GATG~r~v~~l~~~ 357 (385)
T TIGR02445 282 PVPATQKALKRAGLSISDIDVFELN----EAFAAQALPCLKDLGLLDKMDEKVNLNGGAIALGHPLGCSGARISTTLLNL 357 (385)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEEc----cccHHHHHHHHHHcCCCCCCCCCcCCCCchhhcCCCccccHHHHHHHHHHH
Confidence 4678899999999999999987553 333333332 4567621 1211 11 23355666666666677
Q ss_pred HHcC-CCeEEE
Q psy13271 82 IESG-SDCTLA 91 (110)
Q Consensus 82 i~sG-~~~vlv 91 (110)
++.. .++.|+
T Consensus 358 l~~~~~~~Gl~ 368 (385)
T TIGR02445 358 MEQKDATFGLA 368 (385)
T ss_pred HHhcCCCeEEE
Confidence 7554 556554
No 245
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=70.44 E-value=9.2 Score=28.11 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEEee
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCGYV 40 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~~~ 40 (110)
+.....++++|++++++++|||.|.+...
T Consensus 51 ~~l~~~i~~~l~~a~~~~~did~Iavt~G 79 (345)
T PTZ00340 51 EHILSLVKEALEEAKITPSDISLICYTKG 79 (345)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 45566788999999999999999988543
No 246
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=70.05 E-value=22 Score=25.91 Aligned_cols=86 Identities=14% Similarity=0.152 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHH----HH----------------cCCCCCCeeeEeccch-HHH
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRAL----YQ----------------IGMTGIPVFNVNNNCS-TGS 72 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a----~~----------------lg~~~~~~~~i~~~C~-sg~ 72 (110)
+.+.+..-|+|.|.+|+|-|.|+.|-.. ..+..+. .. +......++.=..||+ |..
T Consensus 205 A~dTI~~h~~D~g~~p~dYDlIvTGDLg---~vG~~il~~Ll~~~G~~i~~~~~DCG~~iyd~~~Qdv~aGGSGcgCSA~ 281 (329)
T PF07451_consen 205 AADTIEQHFKDTGRSPDDYDLIVTGDLG---KVGRKILRDLLKEKGYDISENYNDCGLMIYDPEKQDVHAGGSGCGCSAV 281 (329)
T ss_dssp HHHHHHHHHHHCT--GGG-SEEEESS-H---HHHHHHHHHHHHHTT---GGGEEEHHHCSS-TT-S--TT-EESHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhcCeEEecchH---HHHHHHHHHHHHHcCCCCccccccCCeEeecCCccccccCCCCcchHHH
Confidence 3556678889999999999999986321 1122221 11 1111012222223333 223
Q ss_pred HHHHHHHHHHHcC-CCeEEEEeecc-CCCCCC
Q psy13271 73 SALMLAKQFIESG-SDCTLALGFEK-MEKGSL 102 (110)
Q Consensus 73 ~al~~A~~~i~sG-~~~vlv~g~e~-~s~~~~ 102 (110)
.--.+-...++.| .+++|+++.-. +|+..+
T Consensus 282 V~~g~ll~~l~~g~~krvL~vaTGALlSp~s~ 313 (329)
T PF07451_consen 282 VLCGYLLPKLRKGELKRVLFVATGALLSPTSF 313 (329)
T ss_dssp HHHHCHHHHHHTTS-SEEEEEEEEE---HHHH
T ss_pred HHHHHHHHHHHcCCceEEEEEEchhhcCchhh
Confidence 3345668899999 99999998766 454443
No 247
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=69.30 E-value=14 Score=34.13 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCCccccCeEEE-Eeec--CCCcchhHHHHHcCCC-----CCCeee----E-eccchHHHHHHHHHHHH
Q psy13271 15 KEALIKALDDAGISINQVQQACC-GYVY--GDSTCGQRALYQIGMT-----GIPVFN----V-NNNCSTGSSALMLAKQF 81 (110)
Q Consensus 15 ~~a~~~al~~agl~~~~id~vi~-~~~~--~~~~~~~~~a~~lg~~-----~~~~~~----i-~~~C~sg~~al~~A~~~ 81 (110)
.++++++|+++|+++++||.|-. |+.+ +|...-..+.+.|+-. .++..+ | ..-+++|+..+.-+...
T Consensus 318 ~~~i~~Al~~Agi~p~~I~yIeaHGTGT~~gD~~E~~Al~~vf~~~~~~~~~~~vgSvKs~iGH~~~AAG~a~lik~~la 397 (2582)
T TIGR02813 318 AKALKRAYDDAGFAPHTCGLIEAHGTGTAAGDVAEFGGLVSVFSQDNDQKQHIALGSVKSQIGHTKSTAGTAGMIKAVLA 397 (2582)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEecCCCCCCCCHHHHHHHHHHhcccccCCCCceeeccccccccchHhHHHHHHHHHHHH
Confidence 67899999999999999998854 3332 2222122344445421 112111 2 35678899999888888
Q ss_pred HHcC
Q psy13271 82 IESG 85 (110)
Q Consensus 82 i~sG 85 (110)
++.|
T Consensus 398 l~~~ 401 (2582)
T TIGR02813 398 LHHK 401 (2582)
T ss_pred HhcC
Confidence 8888
No 248
>PRK08142 acetyl-CoA acetyltransferase; Provisional
Probab=68.16 E-value=5.4 Score=29.59 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEE
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~ 38 (110)
.....+++++++++|++++|||.+=+-
T Consensus 255 ~~~~~aa~~a~~~AGi~~~did~~ely 281 (388)
T PRK08142 255 SGAAWSGPAAFAEAGVTPADIKYASIY 281 (388)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEe
Confidence 345679999999999999999976553
No 249
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=68.09 E-value=14 Score=22.75 Aligned_cols=31 Identities=26% Similarity=0.234 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHHcCCCccccCeEEEEe
Q psy13271 9 DYPELAKEALIKALDDAGISINQVQQACCGY 39 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~~~~id~vi~~~ 39 (110)
...+...++++++|++.++++.+|+.+....
T Consensus 12 ~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~ 42 (121)
T PF01890_consen 12 APAEEIEEAIEQALAEAGLSPRSIAAIASID 42 (121)
T ss_dssp --HHHHHHHHHHHHHHCT--GGGEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHcCCChhhccEEEecc
Confidence 4566778899999999999999999887543
No 250
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=67.70 E-value=16 Score=22.69 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCeEEEE
Q psy13271 10 YPELAKEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id~vi~~ 38 (110)
..+...++++++|++.++++..|+.+..-
T Consensus 15 ~~e~i~~ai~~~L~~~~l~~~si~~lasi 43 (126)
T PRK07027 15 PAEQIEAAIRAALAQRPLASADVRVVATL 43 (126)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHhheeEeh
Confidence 34456888999999999999999988654
No 251
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed
Probab=67.55 E-value=4.6 Score=29.87 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHH--HHHcCCCC---CCee------eE-eccchHHHHHHHHHHHH
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRA--LYQIGMTG---IPVF------NV-NNNCSTGSSALMLAKQF 81 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~--a~~lg~~~---~~~~------~i-~~~C~sg~~al~~A~~~ 81 (110)
...+++++|+++|++++|||.+=+- +.+....+ .+.||+.+ .|.. .. +...++|..-+......
T Consensus 284 ~~~a~~~al~~Agl~~~DId~~El~----d~F~~~~l~~~e~lg~~~~~~~~vN~~GG~la~GhP~GAtG~~~v~~l~~~ 359 (387)
T PRK08947 284 PVPATQKALKRAGLSISDIDVFELN----EAFAAQSLPCLKDLGLLDKMDEKVNLNGGAIALGHPLGCSGARISTTLLNL 359 (387)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEec----ccchHHHHHHHHHcCCCCCCCCCcCCCCchhhcCCCccccHHHHHHHHHHH
Confidence 3678899999999999999988653 22222322 34567621 1211 11 12234555555555555
Q ss_pred HHcC-CCeEEEE
Q psy13271 82 IESG-SDCTLAL 92 (110)
Q Consensus 82 i~sG-~~~vlv~ 92 (110)
++.. .++.|+-
T Consensus 360 L~~~~~~~gl~~ 371 (387)
T PRK08947 360 MERKDAQFGLAT 371 (387)
T ss_pred HHhcCCCEEEEE
Confidence 5544 6666644
No 252
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=66.22 E-value=12 Score=27.45 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEEe
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCGY 39 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~~ 39 (110)
+-....++++|+++|++.+|||.|.+..
T Consensus 52 e~i~~li~~al~eA~~~~~dID~IA~T~ 79 (342)
T COG0533 52 ENIPPLIEEALAEAGVSLEDIDAIAVTA 79 (342)
T ss_pred HHHHHHHHHHHHHcCCCcccCCEEEEec
Confidence 3456678899999999999999998743
No 253
>COG4065 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.66 E-value=8.8 Score=28.23 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcc-ccCeEEEEee
Q psy13271 6 EDTDYPELAKEALIKALDDAGISIN-QVQQACCGYV 40 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~-~id~vi~~~~ 40 (110)
..++..+|..+...+.|++++++.+ |++.|+-.+.
T Consensus 93 TresVaelVk~tl~eslkkA~l~i~~Dl~FVVRSTG 128 (480)
T COG4065 93 TRESVAELVKDTLLESLKKASLDIDTDLHFVVRSTG 128 (480)
T ss_pred eHHHHHHHHHHHHHHHHHhcCCcccccceEEEeecc
Confidence 3456778999999999999999987 9998887654
No 254
>TIGR02446 FadI fatty oxidation complex, beta subunit FadI. This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli.
Probab=64.04 E-value=6.1 Score=29.75 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCCccccCeEEEE
Q psy13271 15 KEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 15 ~~a~~~al~~agl~~~~id~vi~~ 38 (110)
..+++++|+++|++++|||.+=+-
T Consensus 314 ~~a~~~al~~Agl~~~Did~~Ei~ 337 (430)
T TIGR02446 314 SYATPLALQRAGLALSDLTLIDMH 337 (430)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEec
Confidence 468899999999999999987553
No 255
>PRK09268 acetyl-CoA acetyltransferase; Provisional
Probab=63.91 E-value=6.6 Score=29.52 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEe
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGY 39 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~ 39 (110)
....|++++++++|++++|||.+=+..
T Consensus 310 ~~~~a~~~a~~~AGl~~~Did~~Ei~d 336 (427)
T PRK09268 310 APAYAVPRLLARNGLTLQDFDFYEIHE 336 (427)
T ss_pred cHHHHHHHHHHHcCCCHHHCCEEEecc
Confidence 445689999999999999999876543
No 256
>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This entry contains the N termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the C terminus IPR007525 from INTERPRO.
Probab=62.64 E-value=15 Score=20.96 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=23.3
Q ss_pred ccchHHHHHHHHHHHHHHcC-CCeEEEEee
Q psy13271 66 NNCSTGSSALMLAKQFIESG-SDCTLALGF 94 (110)
Q Consensus 66 ~~C~sg~~al~~A~~~i~sG-~~~vlv~g~ 94 (110)
..+++|...-.++..+++.| .|.|+++..
T Consensus 15 ~~~~sGG~vTaLl~~lLe~g~Vd~vv~~~~ 44 (82)
T PF04422_consen 15 EKSQSGGVVTALLAYLLESGLVDGVVVVGR 44 (82)
T ss_pred ccCCcHHHHHHHHHHHHHcCCceEEEEEee
Confidence 35566666667789999999 999999994
No 257
>PRK06365 acetyl-CoA acetyltransferase; Provisional
Probab=62.38 E-value=8 Score=29.09 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCC--ccccCeEEEEe
Q psy13271 13 LAKEALIKALDDAGIS--INQVQQACCGY 39 (110)
Q Consensus 13 l~~~a~~~al~~agl~--~~~id~vi~~~ 39 (110)
....+++++++++|++ ++|||.+-+-.
T Consensus 294 ~~~~a~~~a~~~AGl~~~~~DiD~~Ei~D 322 (430)
T PRK06365 294 AGRMAAKEAYEMAGITDPLNDLDLIELHD 322 (430)
T ss_pred HHHHHHHHHHHHcCCCCCHHHCCEEEeec
Confidence 3457999999999997 79999886543
No 258
>KOG2707|consensus
Probab=61.34 E-value=10 Score=28.20 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEE
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~ 38 (110)
-.-..++++|+++++.++|+|+|.+.
T Consensus 85 ni~~~iqral~aa~~~p~dldaIAVT 110 (405)
T KOG2707|consen 85 NIPRLIQRALDAAGLSPKDLDAIAVT 110 (405)
T ss_pred HHHHHHHHHHHHcCCCcccceeEEEe
Confidence 34567889999999999999998773
No 259
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=60.25 E-value=44 Score=26.79 Aligned_cols=44 Identities=7% Similarity=0.012 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEee-cCCCcchhHHHHHcCCC
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYV-YGDSTCGQRALYQIGMT 57 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~-~~~~~~~~~~a~~lg~~ 57 (110)
....+.++|+++++++++||.|++... +--......+...+|..
T Consensus 336 ~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~ 380 (657)
T PTZ00186 336 SIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKD 380 (657)
T ss_pred HHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCC
Confidence 355678899999999999998775332 21111223556677753
No 260
>PRK06157 acetyl-CoA acetyltransferase; Validated
Probab=60.03 E-value=9.8 Score=28.25 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCC--ccccCeEEEE
Q psy13271 14 AKEALIKALDDAGIS--INQVQQACCG 38 (110)
Q Consensus 14 ~~~a~~~al~~agl~--~~~id~vi~~ 38 (110)
...+++++++++|++ ++|||.+=+-
T Consensus 268 ~~~aa~~a~~~AGl~~~~~Did~~Ei~ 294 (398)
T PRK06157 268 TRIAARKAYREAGITDPREELSMAEVH 294 (398)
T ss_pred HHHHHHHHHHHcCCCCchhcCCEEEEe
Confidence 567899999999997 7999987553
No 261
>PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=59.82 E-value=40 Score=25.03 Aligned_cols=72 Identities=17% Similarity=0.064 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEE-EeecCCC--cchhHHHHHcCCC--CCCee-----eEeccchHHHHHHHHHHHH
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACC-GYVYGDS--TCGQRALYQIGMT--GIPVF-----NVNNNCSTGSSALMLAKQF 81 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~-~~~~~~~--~~~~~~a~~lg~~--~~~~~-----~i~~~C~sg~~al~~A~~~ 81 (110)
+-..++++++|+++++ ++||.|-. ++.++.. .....+.+.+|-. ..+.. .=....++|...+..+...
T Consensus 274 ~~~~~a~~~al~~ag~--~~i~~v~~hgtgt~~~D~~E~~al~~~f~~~~~~~~v~s~K~~~Gh~~~AsG~~~~~~~~~~ 351 (406)
T PRK08439 274 EGPLRAMKAALEMAGN--PKIDYINAHGTSTPYNDKNETAALKELFGSKEKVPPVSSTKGQIGHCLGAAGAIEAVISIMA 351 (406)
T ss_pred HHHHHHHHHHHHHcCC--CccCEEEccCCcCCCCCHHHHHHHHHHhcccCCCCeEECcccccccCchhhhHHHHHHHHHH
Confidence 4456789999999998 78988754 3333221 1112233444431 11221 1235667777777777888
Q ss_pred HHcC
Q psy13271 82 IESG 85 (110)
Q Consensus 82 i~sG 85 (110)
++.|
T Consensus 352 l~~~ 355 (406)
T PRK08439 352 MRDG 355 (406)
T ss_pred HhCC
Confidence 8888
No 262
>PRK13410 molecular chaperone DnaK; Provisional
Probab=59.75 E-value=37 Score=27.24 Aligned_cols=45 Identities=18% Similarity=0.055 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEeecCC-CcchhHHHHHcCCC
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGYVYGD-STCGQRALYQIGMT 57 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~~~~~-~~~~~~~a~~lg~~ 57 (110)
-..+.++++|+++|+++++||.|++.....- ......+...+|..
T Consensus 310 r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~ 355 (668)
T PRK13410 310 RLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPRE 355 (668)
T ss_pred HHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCC
Confidence 3455678899999999999998776432211 11223455667643
No 263
>PLN03184 chloroplast Hsp70; Provisional
Probab=57.61 E-value=43 Score=26.86 Aligned_cols=44 Identities=16% Similarity=0.088 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCC-CcchhHHHHHcCCC
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGD-STCGQRALYQIGMT 57 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~-~~~~~~~a~~lg~~ 57 (110)
..+.+.++|+++++++++||.|++.....- ......+...+|..
T Consensus 348 ~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~ 392 (673)
T PLN03184 348 CKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKD 392 (673)
T ss_pred HHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCC
Confidence 345577899999999999998776432111 11223456667653
No 264
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=57.51 E-value=14 Score=27.37 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHcCCCccccCeEEE
Q psy13271 11 PELAKEALIKALDDAGISINQVQQACC 37 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~~id~vi~ 37 (110)
.++..+++++.++++++++++||.|-.
T Consensus 70 g~~~a~av~~~~~~~~l~~~~id~Igs 96 (365)
T PRK09585 70 GRLFAEAVNALLAEAGLSPEDIDAIGS 96 (365)
T ss_pred HHHHHHHHHHHHHHcCCCccCccEEEe
Confidence 356788999999999999999998754
No 265
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=56.93 E-value=61 Score=25.67 Aligned_cols=44 Identities=20% Similarity=0.101 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCC-CcchhHHHHHcCCC
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGD-STCGQRALYQIGMT 57 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~-~~~~~~~a~~lg~~ 57 (110)
..+.++++|+++++.+++||.|++.....- ......+...+|..
T Consensus 311 ~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~ 355 (616)
T PRK05183 311 TLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRT 355 (616)
T ss_pred HHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccC
Confidence 345678899999999999998876432211 11223556667754
No 266
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=56.08 E-value=16 Score=24.02 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHHHcCCCccccCeEEEEeec
Q psy13271 8 TDYPELAKEALIKALDDAGISINQVQQACCGYVY 41 (110)
Q Consensus 8 ~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~ 41 (110)
.++..=..++.++++++.++++++|+.+.+|++.
T Consensus 33 ~d~~~gi~~al~~l~~~~~~~~~~i~~v~~gTT~ 66 (176)
T PF05378_consen 33 DDPAEGILEALDALLEESGIDPSDIDRVRHGTTV 66 (176)
T ss_pred cCHHHHHHHHHHhhhcccCCChhhCcEEEeccHH
Confidence 4566667888889999999999999999998753
No 267
>PRK06066 acetyl-CoA acetyltransferase; Provisional
Probab=56.07 E-value=12 Score=27.87 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCC--ccccCeEEEE
Q psy13271 15 KEALIKALDDAGIS--INQVQQACCG 38 (110)
Q Consensus 15 ~~a~~~al~~agl~--~~~id~vi~~ 38 (110)
..|++++++++|++ ++|||.+-+-
T Consensus 259 ~~Aa~~a~~~AGi~~p~~DiD~~ei~ 284 (385)
T PRK06066 259 RIAADMAYKMAGIESPRKEVDAAEVD 284 (385)
T ss_pred HHHHHHHHHHcCCCCCHHHCcEEEEe
Confidence 47999999999997 6999987654
No 268
>PLN03170 chalcone synthase; Provisional
Probab=55.11 E-value=75 Score=23.74 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCC
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT 57 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~ 57 (110)
.....++++|+++|+..+|||..++-.. ....-..+.+.||+.
T Consensus 282 ~i~~~v~~~L~~~gl~~~di~~~v~Hqg--g~~il~~v~~~Lgl~ 324 (401)
T PLN03170 282 NIERSLEEAFKPLGITDYNSIFWVAHPG--GPAILDQVEAKVGLE 324 (401)
T ss_pred HHHHHHHHHHHhcCCCccccCeEEecCC--cHHHHHHHHHHcCCC
Confidence 3445677888889999999988665221 111223456778885
No 269
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=54.26 E-value=85 Score=24.76 Aligned_cols=44 Identities=16% Similarity=0.100 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecC-CCcchhHHHHHcCCC
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYG-DSTCGQRALYQIGMT 57 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~-~~~~~~~~a~~lg~~ 57 (110)
..+.+.++|+++++++.+||.|++..... -......+...+|..
T Consensus 295 i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~ 339 (599)
T TIGR01991 295 TLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQE 339 (599)
T ss_pred HHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCC
Confidence 45667889999999999999887543221 111223556667654
No 270
>PF09663 Amido_AtzD_TrzD: Amidohydrolase ring-opening protein (Amido_AtzD_TrzD); InterPro: IPR014086 Members of this family are ring-opening amidohydrolases, including cyanuric acid amidohydrolase (3.5.2.15 from EC) (AtzD and TrzD) and barbiturase. Note that barbiturase does not act as defined for 3.5.2.1 from EC (barbiturate + water = malonate + urea) but rather catalyses the ring opening of barbiturase acid to ureidomalonic acid [].; GO: 0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
Probab=53.38 E-value=19 Score=26.62 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHcCC-CccccCeEEE
Q psy13271 11 PELAKEALIKALDDAGI-SINQVQQACC 37 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl-~~~~id~vi~ 37 (110)
.+...++++++++++|| +|.|+-.|-+
T Consensus 131 V~~vA~aV~~aM~~AGI~dpaDVH~VQv 158 (365)
T PF09663_consen 131 VEEVAAAVRAAMADAGITDPADVHFVQV 158 (365)
T ss_pred HHHHHHHHHHHHHHcCCCChhheeeEEe
Confidence 34667889999999999 7888887755
No 271
>TIGR02714 amido_AtzD_TrzD ring-opening amidohydrolases. Members of this family are are ring-opening amidohydrolases, including cyanuric acid amidohydrolase (EC 3.5.2.15) (AtzD and TrzD) and barbiturase. Note that barbiturase does not act as defined for EC 3.5.2.1 (barbiturate + water = malonate + urea) but rather catalyzes the ring-opening of barbituric acid to ureidomalonic acid (see Soong, et al., PubMed:11485332).
Probab=53.22 E-value=18 Score=26.63 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHcCC-CccccCeEEE
Q psy13271 11 PELAKEALIKALDDAGI-SINQVQQACC 37 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl-~~~~id~vi~ 37 (110)
.++...++++++.++|| +|.|+-.|=+
T Consensus 132 V~~vA~aV~~AM~~AGI~dpaDVH~VQv 159 (366)
T TIGR02714 132 ITETAAAVKRAMRDAGIADPADVHFVQV 159 (366)
T ss_pred HHHHHHHHHHHHHHcCCCChhHeeEEEe
Confidence 34678889999999999 7888877644
No 272
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=52.70 E-value=20 Score=27.60 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEee
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGYV 40 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~~ 40 (110)
.....++++|++++++++|||.|.++..
T Consensus 51 ~l~~~i~~~l~~~~~~~~~id~iav~~g 78 (535)
T PRK09605 51 AIPKVIKEALEEAGLKPEDIDLVAFSQG 78 (535)
T ss_pred HHHHHHHHHHHHcCCCHhhCCEEEECCC
Confidence 4457789999999999999999988643
No 273
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=52.63 E-value=15 Score=28.69 Aligned_cols=35 Identities=17% Similarity=0.400 Sum_probs=26.6
Q ss_pred HHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCC
Q psy13271 21 ALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGM 56 (110)
Q Consensus 21 al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~ 56 (110)
+++++|++.+|+|.+.++..++.+.. ..-+..+|+
T Consensus 483 L~~kaGie~eDie~~ymAGAfGtyid-~~~A~~iGl 517 (614)
T COG3894 483 LIEKAGIELEDIERIYMAGAFGTYID-AKKAMVIGL 517 (614)
T ss_pred HHHHcCCChhhhhheeeccccccccc-hhHhheeec
Confidence 45889999999999998877766643 344566777
No 274
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=51.61 E-value=47 Score=24.11 Aligned_cols=30 Identities=23% Similarity=0.156 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCeEEEEe
Q psy13271 10 YPELAKEALIKALDDAGISINQVQQACCGY 39 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id~vi~~~ 39 (110)
..+...++++++|++.|++++.|+.+....
T Consensus 206 ~~e~i~~ai~~~L~~~~i~~~~i~~iatid 235 (315)
T PRK05788 206 SAEEIAEAVERALEALNIDPRAVKAIASIT 235 (315)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHccEEeeee
Confidence 445567889999999999999999886543
No 275
>KOG2708|consensus
Probab=50.71 E-value=27 Score=24.67 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEe
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGY 39 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~ 39 (110)
-...-++.+|++++++.+|||.+.+.-
T Consensus 52 ~il~Lv~~al~ea~v~~~diD~icyTK 78 (336)
T KOG2708|consen 52 WILGLVKQALEEAGVTSDDIDCICYTK 78 (336)
T ss_pred HHHHHHHHHHHHcCCChhhCCEEEEcC
Confidence 345567889999999999999988743
No 276
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=48.23 E-value=22 Score=25.69 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCCccccCeEEEEee
Q psy13271 8 TDYPELAKEALIKALDDAGISINQVQQACCGYV 40 (110)
Q Consensus 8 ~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~ 40 (110)
+....-..+++++++.++|++|++|+....+-.
T Consensus 45 e~A~~ni~~ai~~A~~~aG~~~~~i~~~~agla 77 (301)
T COG2971 45 EEAVRNIKDAIREALDEAGLKPDEIAAIVAGLA 77 (301)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHhCceeeeee
Confidence 344556788999999999999999998777654
No 277
>PRK13411 molecular chaperone DnaK; Provisional
Probab=47.87 E-value=69 Score=25.57 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCC-CcchhHHHHHcCC
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGD-STCGQRALYQIGM 56 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~-~~~~~~~a~~lg~ 56 (110)
..+.+.++|+++++.+++||.|++.....- ......+...+|-
T Consensus 310 ~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~ 353 (653)
T PRK13411 310 TIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGG 353 (653)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCC
Confidence 456678899999999999998776432211 1122345566764
No 278
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=47.67 E-value=7 Score=25.27 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=20.4
Q ss_pred HHHHcCCCCCCeeeEeccchHHHHHHHHHH
Q psy13271 50 ALYQIGMTGIPVFNVNNNCSTGSSALMLAK 79 (110)
Q Consensus 50 ~a~~lg~~~~~~~~i~~~C~sg~~al~~A~ 79 (110)
.+..+|+.++|.+-+++-.-.|...+..-.
T Consensus 159 ~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~ 188 (192)
T cd03022 159 EAIARGVFGVPTFVVDGEMFWGQDRLDMLE 188 (192)
T ss_pred HHHHcCCCcCCeEEECCeeecccccHHHHH
Confidence 345688988999988766655555555433
No 279
>KOG1391|consensus
Probab=45.50 E-value=40 Score=24.27 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCCccccCeEEEEe
Q psy13271 15 KEALIKALDDAGISINQVQQACCGY 39 (110)
Q Consensus 15 ~~a~~~al~~agl~~~~id~vi~~~ 39 (110)
+-|++.+|+.+|+..+|||.+=+..
T Consensus 296 vPAI~~vLKksGlkl~DiDl~EvNE 320 (396)
T KOG1391|consen 296 VPAISGVLKKSGLKLKDIDLVEVNE 320 (396)
T ss_pred cHHHHHHHHHcCCcccccceEEech
Confidence 4578999999999999999887653
No 280
>CHL00094 dnaK heat shock protein 70
Probab=44.90 E-value=99 Score=24.49 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCC-CcchhHHHHHcCCC
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGD-STCGQRALYQIGMT 57 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~-~~~~~~~a~~lg~~ 57 (110)
....++++|+++++++++||.|++.....- ......+...+|..
T Consensus 311 ~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~ 355 (621)
T CHL00094 311 CRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKK 355 (621)
T ss_pred HHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCC
Confidence 344567899999999999998876432211 11224566677753
No 281
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=44.50 E-value=1.4 Score=28.64 Aligned_cols=59 Identities=22% Similarity=0.288 Sum_probs=29.3
Q ss_pred HHHHHHHcCCCccccCeEEEEeecCCC-cchhHHHHHcCCCCCCeeeEecc-chHHHHHHH
Q psy13271 18 LIKALDDAGISINQVQQACCGYVYGDS-TCGQRALYQIGMTGIPVFNVNNN-CSTGSSALM 76 (110)
Q Consensus 18 ~~~al~~agl~~~~id~vi~~~~~~~~-~~~~~~a~~lg~~~~~~~~i~~~-C~sg~~al~ 76 (110)
..++++++|+++++++..+-....... ......+..+|+.++|.+-++.- .-.|...+.
T Consensus 126 l~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~ 186 (193)
T PF01323_consen 126 LAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLD 186 (193)
T ss_dssp HHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHH
T ss_pred HHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHH
Confidence 345567778877666544311000000 00113456789999999998644 344443333
No 282
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=44.32 E-value=83 Score=25.11 Aligned_cols=42 Identities=14% Similarity=-0.025 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCCccccCeEEEEeecC-CCcchhHHHHHcCC
Q psy13271 15 KEALIKALDDAGISINQVQQACCGYVYG-DSTCGQRALYQIGM 56 (110)
Q Consensus 15 ~~a~~~al~~agl~~~~id~vi~~~~~~-~~~~~~~~a~~lg~ 56 (110)
.+.+.++|+++++++++||.|++..... -......+...++-
T Consensus 316 ~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~ 358 (653)
T PTZ00009 316 LQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNG 358 (653)
T ss_pred HHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCC
Confidence 4457889999999999999877643211 11122345566654
No 283
>PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=43.88 E-value=84 Score=23.49 Aligned_cols=71 Identities=14% Similarity=0.063 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEE-EeecC--CCcchhHHHHHcCCCCCCeeeE-----eccchHHHHHHHHHHHHHH
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACC-GYVYG--DSTCGQRALYQIGMTGIPVFNV-----NNNCSTGSSALMLAKQFIE 83 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~-~~~~~--~~~~~~~~a~~lg~~~~~~~~i-----~~~C~sg~~al~~A~~~i~ 83 (110)
+-..++++++|++++ + +||.|.. ++.++ |......+...+|-+..|...+ ....++|...+......++
T Consensus 274 ~~~~~a~~~Al~~~~--~-~Idyi~aHgtGT~~~D~~E~~Ai~~~fg~~~~~v~s~K~~~GH~~~AaG~~e~i~~~lal~ 350 (406)
T PRK07967 274 EGAVRCMQMALATVD--T-PIDYINTHGTSTPVGDVKELGAIREVFGDKSPAISATKSLTGHSLGAAGVQEAIYSLLMME 350 (406)
T ss_pred HHHHHHHHHHHhCCC--C-CccEEEcCCCCCCCCCHHHHHHHHHHhCCCCCeeECcccccccCccccchHHHHHHHHHHh
Confidence 345678899998654 4 8998754 33332 2222233445566432222221 3456677777777777888
Q ss_pred cC
Q psy13271 84 SG 85 (110)
Q Consensus 84 sG 85 (110)
.|
T Consensus 351 ~~ 352 (406)
T PRK07967 351 HG 352 (406)
T ss_pred cC
Confidence 88
No 284
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=43.62 E-value=89 Score=24.69 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEee-cCCCcchhHHHHHcCCCCCCeeeEeccchHHHHHHH
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYV-YGDSTCGQRALYQIGMTGIPVFNVNNNCSTGSSALM 76 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~-~~~~~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~ 76 (110)
..+-...+|.++++++.+|+.|+.... +.-......+...+| + .+.-.++.-++-..-|..
T Consensus 292 ~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~-~~~~~inpdeava~GAa~ 353 (579)
T COG0443 292 TIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-K-EPEKSINPDEAVALGAAI 353 (579)
T ss_pred HHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-c-cccccCCccHHHHHHHHH
Confidence 345567899999999999998876432 111112234566777 3 255556655544444443
No 285
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=42.91 E-value=39 Score=17.65 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCCccccCeEEEEe
Q psy13271 15 KEALIKALDDAGISINQVQQACCGY 39 (110)
Q Consensus 15 ~~a~~~al~~agl~~~~id~vi~~~ 39 (110)
-+|...++.+-+++.++++.-|+-.
T Consensus 8 eeAi~~A~~~l~~~~~~~~~eVi~~ 32 (52)
T PF14804_consen 8 EEAIEKALKELGVPREELEYEVIEE 32 (52)
T ss_dssp HHHHHHHHHHTT--GGGEEEEEEE-
T ss_pred HHHHHHHHHHhCCChHHEEEEEEEc
Confidence 3678889999999999999877643
No 286
>PLN03173 chalcone synthase; Provisional
Probab=42.82 E-value=1.4e+02 Score=22.26 Aligned_cols=43 Identities=12% Similarity=-0.014 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCC
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT 57 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~ 57 (110)
.....+++.|++.|+.++|||.+++-.. ....-..+.+.||+.
T Consensus 278 ~~~~~i~~~L~~~gl~~~di~~~v~Hqg--g~~Il~~v~~~LgL~ 320 (391)
T PLN03173 278 NVEKSLTEAFKPLGISDWNSLFWIAHPG--GPAILDQVEAKLALK 320 (391)
T ss_pred HHHHHHHHHHHhcCCCccccCeEEECCC--cHHHHHHHHHHcCCC
Confidence 3445667888899999999998765221 111223556778885
No 287
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=40.76 E-value=32 Score=25.63 Aligned_cols=26 Identities=23% Similarity=0.002 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCCc--cccCeEEEEe
Q psy13271 14 AKEALIKALDDAGISI--NQVQQACCGY 39 (110)
Q Consensus 14 ~~~a~~~al~~agl~~--~~id~vi~~~ 39 (110)
...+++++++++|+++ +|||.+=+-.
T Consensus 264 ~~~a~~~a~~~aGi~~p~~diD~~ei~D 291 (392)
T PRK06065 264 VEFAARMAYKMAGIERPRKEIDVAEPYD 291 (392)
T ss_pred HHHHHHHHHHHcCCCCchhhCcEEEecC
Confidence 3579999999999984 8999876543
No 288
>TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade. This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.
Probab=40.53 E-value=42 Score=24.74 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEe
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGY 39 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~ 39 (110)
...++.++.|++.|++++|||.+++-.
T Consensus 206 ~~~~~~~~~l~~~g~~~~did~~i~H~ 232 (379)
T TIGR01835 206 AFENAWNDYAKRTGLSLADFAAFCFHV 232 (379)
T ss_pred HHHHHHHHHHHHhCCCHHHcCEEEECC
Confidence 456778888999999999999988754
No 289
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=40.13 E-value=31 Score=16.91 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=11.8
Q ss_pred HHHHHHHHcCCCccccC
Q psy13271 17 ALIKALDDAGISINQVQ 33 (110)
Q Consensus 17 a~~~al~~agl~~~~id 33 (110)
++++.+++.|++.++|.
T Consensus 8 ~ar~la~e~gidl~~v~ 24 (39)
T PF02817_consen 8 AARKLAAELGIDLSQVK 24 (39)
T ss_dssp HHHHHHHHTT--GGGSS
T ss_pred HHHHHHHHcCCCccccc
Confidence 56778888999988775
No 290
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=39.75 E-value=35 Score=25.32 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEE
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACC 37 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~ 37 (110)
++..+++.+.|++.++++++||.|-.
T Consensus 68 ~~~a~av~~~l~~~~i~~~~I~~Igs 93 (364)
T PF03702_consen 68 ELFADAVNQFLKKNGISPSDIDLIGS 93 (364)
T ss_dssp HHHHHHHHHHHHHCT--GGGEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcccccEEEe
Confidence 46788999999999999999998743
No 291
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=39.45 E-value=44 Score=20.15 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHHcCCCccccCeEEEE
Q psy13271 9 DYPELAKEALIKALDDAGISINQVQQACCG 38 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~~~~id~vi~~ 38 (110)
+..+-+.+.+++||++-|++.++.+.....
T Consensus 23 t~~~~a~~vV~eALeKygL~~e~p~~Y~Lv 52 (100)
T cd01781 23 SINDNADRIVGEALEKYGLEKSDPDDYCLV 52 (100)
T ss_pred cCCccHHHHHHHHHHHhCCCccCccceEEE
Confidence 334556778899999999999887744443
No 292
>KOG0103|consensus
Probab=38.47 E-value=78 Score=25.75 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=34.4
Q ss_pred HHHHHHHcCCCccccCeE-EEEeecCCCcchhHHHHHcCCCCCCeeeEe-ccchHHHHHHHHHH
Q psy13271 18 LIKALDDAGISINQVQQA-CCGYVYGDSTCGQRALYQIGMTGIPVFNVN-NNCSTGSSALMLAK 79 (110)
Q Consensus 18 ~~~al~~agl~~~~id~v-i~~~~~~~~~~~~~~a~~lg~~~~~~~~i~-~~C~sg~~al~~A~ 79 (110)
...+|+++++..+||+.| |+|..+--......+...+|=. +..+++ .-|-+-..||+-|.
T Consensus 320 ~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke--~s~TlN~dEavarG~ALqcAI 381 (727)
T KOG0103|consen 320 LLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKE--LSRTLNQDEAVARGAALQCAI 381 (727)
T ss_pred HHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCc--ccccccHHHHHHHhHHHHHHh
Confidence 567899999999999987 4444322222234566777653 334444 23333344554444
No 293
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=38.39 E-value=1.3e+02 Score=23.80 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCC-cchhHHHHHcCC
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDS-TCGQRALYQIGM 56 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~-~~~~~~a~~lg~ 56 (110)
..+.++++|+++++.+.+||.|++....... .....+...+|.
T Consensus 309 ~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~ 352 (627)
T PRK00290 309 TIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGK 352 (627)
T ss_pred HHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCC
Confidence 4556788999999999999987764322111 122345566664
No 294
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=36.62 E-value=1.3e+02 Score=23.51 Aligned_cols=43 Identities=21% Similarity=0.162 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCCC-cchhHHHHHcCC
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGDS-TCGQRALYQIGM 56 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~~-~~~~~~a~~lg~ 56 (110)
..+.+.++|+++++.+.+||.|++.....-. .....+...+|.
T Consensus 307 ~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~ 350 (595)
T TIGR02350 307 TKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGK 350 (595)
T ss_pred HHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCC
Confidence 4556788999999999999988764322111 122345566773
No 295
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=36.22 E-value=93 Score=20.40 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=26.3
Q ss_pred eeeEeccchHHHHHHHHHHHHHHcC--CCeEEEEe
Q psy13271 61 VFNVNNNCSTGSSALMLAKQFIESG--SDCTLALG 93 (110)
Q Consensus 61 ~~~i~~~C~sg~~al~~A~~~i~sG--~~~vlv~g 93 (110)
.+.+-.=|.+|..|+..|..+.+.| ...++++-
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD 101 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQLEEAGEEVSRLILID 101 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEES
T ss_pred CeeehccCccHHHHHHHHHHHHHhhhccCceEEec
Confidence 4667789999999999999999999 44444443
No 296
>PF06089 Asparaginase_II: L-asparaginase II; InterPro: IPR010349 This family consists of several bacterial L-asparaginase II proteins. L-asparaginase (3.5.1.1 from EC) catalyses the hydrolysis of L-asparagine to L-aspartate and ammonium. Rhizobium etli possesses two asparaginases: asparaginase I, which is thermostable and constitutive, and asparaginase II, which is thermolabile, induced by asparagine and repressed by the carbon source [].
Probab=35.18 E-value=1.6e+02 Score=21.68 Aligned_cols=64 Identities=23% Similarity=0.284 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHH
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFI 82 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i 82 (110)
.-.++++..|+++|++++++. ++...| ........+=-.+.....+.+-||+=..+|...+...
T Consensus 80 ~H~~~v~~~L~k~gL~e~~L~---Cg~~~P---~~~~~~~~li~~g~~p~~l~~NCSGKHagmLa~c~~~ 143 (324)
T PF06089_consen 80 EHVEAVRSMLAKAGLSEEDLQ---CGPHWP---LDEEAREALIRAGGKPSRLHNNCSGKHAGMLALCVHL 143 (324)
T ss_pred HHHHHHHHHHHHcCCCHHHcC---CCCCCC---CCHHHHHHHHhCCCCCCcccccChhHHHHHHHHHHHc
Confidence 346778899999999887763 222222 1112222211112233457788988888887766543
No 297
>COG4401 AroH Chorismate mutase [Amino acid transport and metabolism]
Probab=34.32 E-value=1.2e+02 Score=18.85 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHH----HcCCCccccCeEEEEeecCCC--cchhHHHHH-cCCCCCCeeeEeccch
Q psy13271 11 PELAKEALIKALD----DAGISINQVQQACCGYVYGDS--TCGQRALYQ-IGMTGIPVFNVNNNCS 69 (110)
Q Consensus 11 ~~l~~~a~~~al~----~agl~~~~id~vi~~~~~~~~--~~~~~~a~~-lg~~~~~~~~i~~~C~ 69 (110)
.+-..+|..++|+ +.-.+|+|+-.+++. .++|. .+|+.+++. -|+..+|.+.+..-|-
T Consensus 17 ~eeI~~at~eLl~~i~~~N~~~pedv~sv~~s-vT~Dl~A~FPAka~R~~~gw~~Vpv~~~Qem~V 81 (125)
T COG4401 17 EEEILDATKELLEEIEEENITDPEDVVSVILS-VTEDLDAIFPAKAVRELPGWEYVPVMCMQEMPV 81 (125)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhheeeEEEE-eccchhhhCcHHHhccCCCCcccceeeeeeccC
Confidence 3445556555554 456788888877764 44443 245555544 4677677766655543
No 298
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=33.33 E-value=47 Score=23.86 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHcCCCccccCeEEE
Q psy13271 11 PELAKEALIKALDDAGISINQVQQACC 37 (110)
Q Consensus 11 ~~l~~~a~~~al~~agl~~~~id~vi~ 37 (110)
.++-.-++.+||.++|+++.+|+.++.
T Consensus 75 s~~n~~av~haL~~~G~~~~~V~lvvG 101 (318)
T PF06406_consen 75 SDLNLVAVHHALLKAGLEPQDVDLVVG 101 (318)
T ss_dssp SHHHHHHHHHHHHHHS--SSEEEEEEE
T ss_pred chhhHHHHHHHHHHcCCCCCCeEEEec
Confidence 356677889999999999988886554
No 299
>COG2073 CbiG Cobalamin biosynthesis protein CbiG [Coenzyme metabolism]
Probab=33.01 E-value=1.3e+02 Score=21.61 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHHHcCC
Q psy13271 9 DYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGM 56 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~~lg~ 56 (110)
...+....+.+++|+..++.+.+|+.+.....-.+...-...++.++.
T Consensus 206 ~~~~~~~~~i~~~l~~~~l~~~~i~~i~s~~~~~~~~~l~~~~~~~~~ 253 (298)
T COG2073 206 VDAELLECAIEKALEGLGLAPKRIDGIASIALKADEPGLIQLAKKLGV 253 (298)
T ss_pred CCHHHHHHHHHHHHHHcCCChhhhcceeeeeecccCHHHHHHHHHcCC
Confidence 344566778999999999999999998876543222111234455544
No 300
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=32.88 E-value=69 Score=25.63 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCCccccCeEEEEeecC-CCcchhHHHHHcCC
Q psy13271 15 KEALIKALDDAGISINQVQQACCGYVYG-DSTCGQRALYQIGM 56 (110)
Q Consensus 15 ~~a~~~al~~agl~~~~id~vi~~~~~~-~~~~~~~~a~~lg~ 56 (110)
.+.+.++|+++++.+++||.|+...... -......+...+|.
T Consensus 351 ~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~ 393 (663)
T PTZ00400 351 IEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGK 393 (663)
T ss_pred HHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCC
Confidence 4556789999999999999887643211 11122345566664
No 301
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=30.12 E-value=48 Score=24.72 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=30.9
Q ss_pred hHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEe
Q psy13271 48 QRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALG 93 (110)
Q Consensus 48 ~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g 93 (110)
+.++.++|-+. +. +|+||+.||+.|...+.-| -|-||+-.
T Consensus 41 ~~~ae~~G~k~--av----a~~sgT~AL~laL~al~ig~GDeVI~ps 81 (374)
T COG0399 41 QAFAEYLGVKY--AV----AVSSGTAALHLALLALAIGPGDEVIVPS 81 (374)
T ss_pred HHHHHHhCCCe--EE----EecChHHHHHHHHHhcCCCCCCEEEecC
Confidence 45777888763 33 7789999999999988888 88777644
No 302
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=30.12 E-value=43 Score=19.20 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEEee
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCGYV 40 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~~~ 40 (110)
.|....+.++-++.|++|+||--++.-+.
T Consensus 47 ~ly~~l~~~L~~~~gi~p~Dv~I~l~e~~ 75 (82)
T PF14552_consen 47 ALYRALAERLAEKLGIRPEDVMIVLVENP 75 (82)
T ss_dssp HHHHHHHHHHHHHH---GGGEEEEEEEE-
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEEEEECC
Confidence 35555555555568999998877766544
No 303
>PRK03011 butyrate kinase; Provisional
Probab=29.41 E-value=97 Score=22.90 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCCccccCeEEE
Q psy13271 8 TDYPELAKEALIKALDDAGISINQVQQACC 37 (110)
Q Consensus 8 ~~~~~l~~~a~~~al~~agl~~~~id~vi~ 37 (110)
.+..++-.+.+.+.|++.|++.++|++|+.
T Consensus 44 ~~q~~~r~~~i~~~l~~~g~~~~~l~av~~ 73 (358)
T PRK03011 44 IDQYEFRKQAILDFLKEHGIDLSELDAVVG 73 (358)
T ss_pred cchHHHHHHHHHHHHHHcCCChhcceEEEE
Confidence 466788899999999999999999998844
No 304
>PLN02854 3-ketoacyl-CoA synthase
Probab=29.29 E-value=2.8e+02 Score=21.79 Aligned_cols=42 Identities=7% Similarity=-0.005 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCCc------cccCeEEEEeecCCCcchhHHHHHcCCC
Q psy13271 14 AKEALIKALDDAGISI------NQVQQACCGYVYGDSTCGQRALYQIGMT 57 (110)
Q Consensus 14 ~~~a~~~al~~agl~~------~~id~vi~~~~~~~~~~~~~~a~~lg~~ 57 (110)
+...+++.|.++|+.+ ++||.+++-.. ....-..+.+.||+.
T Consensus 387 ~~~~i~~~L~~~gl~~~~pd~~~didhf~iHqg--gr~IId~v~k~LgL~ 434 (521)
T PLN02854 387 FVTLVRRKLLKAKVKPYIPDFKLAFEHFCIHAG--GRAVLDELQKNLQLS 434 (521)
T ss_pred HHHHHHHHHHHcCCCccCCcccccCcEEEECCC--CHHHHHHHHHHcCCC
Confidence 4566788888999986 57887665221 111223566778885
No 305
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.24 E-value=53 Score=27.93 Aligned_cols=74 Identities=24% Similarity=0.268 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEE-EEeec--CCCcchhHHHHHcCCC--CCCee------eE-eccchHHHHHHHHHH
Q psy13271 12 ELAKEALIKALDDAGISINQVQQAC-CGYVY--GDSTCGQRALYQIGMT--GIPVF------NV-NNNCSTGSSALMLAK 79 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi-~~~~~--~~~~~~~~~a~~lg~~--~~~~~------~i-~~~C~sg~~al~~A~ 79 (110)
+.-.++.+++|+++|++|++|+.|= .|+.+ +|...-..+...++-. ..+|. .| ....+.|+.++.-..
T Consensus 283 ~aQ~~v~~~al~~a~i~p~tv~yvEaHgTGT~lGDpiE~~aL~~v~~~~~~~~~c~iGSvKsNiGH~~~AaGiagliK~~ 362 (1061)
T COG3321 283 EAQADVIREALADAGIDPATVQYVEAHGTGTPLGDPIEANALGAVYGEGAPAQPCAIGSVKSNIGHLEAAAGIAGLIKTA 362 (1061)
T ss_pred HHHHHHHHHHHHhcCCCcccCcEEEecCCCCCCcCHHHHHHHHHHhccCCCCCcccccccccccccHHHHHHHHHHHHHH
Confidence 4556788999999999999999874 33322 2222112222222211 11111 12 246677777777777
Q ss_pred HHHHcC
Q psy13271 80 QFIESG 85 (110)
Q Consensus 80 ~~i~sG 85 (110)
..++.+
T Consensus 363 Lal~~~ 368 (1061)
T COG3321 363 LALKHG 368 (1061)
T ss_pred HhhhcC
Confidence 777777
No 306
>PF05589 DUF768: Protein of unknown function (DUF768); InterPro: IPR008486 This family consists of several uncharacterised hypothetical proteins from Rhizobium loti (Mesorhizobium loti).
Probab=28.87 E-value=49 Score=18.22 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHHHcCCCccccCe
Q psy13271 9 DYPELAKEALIKALDDAGISINQVQQ 34 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~~~~id~ 34 (110)
+..+|+.+....| +..|++..+|+-
T Consensus 27 s~~~La~kl~adA-~a~Gi~~~ei~e 51 (64)
T PF05589_consen 27 SAAELAEKLFADA-EAAGIPREEIEE 51 (64)
T ss_pred hHHHHHHHHHHHH-HHcCCCHHHHHH
Confidence 4455666655554 567898888763
No 307
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=28.69 E-value=1.5e+02 Score=20.36 Aligned_cols=27 Identities=37% Similarity=0.565 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCCccccCeEEEEe
Q psy13271 13 LAKEALIKALDDAGISINQVQQACCGY 39 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~id~vi~~~ 39 (110)
-..+++.+++++.++++.+|+.+.++.
T Consensus 43 ~i~~~i~~~~~~~~~~~~~i~~~~~g~ 69 (271)
T PF01869_consen 43 NIKEAIEEALSQAGLSPDDIAAICIGA 69 (271)
T ss_dssp HHHHHHHHHHHHHTTSTTCCCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCccccceeeeeE
Confidence 456788899999999999999885554
No 308
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=27.67 E-value=1.4e+02 Score=23.18 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCCCccccCeEEEEeecCC-CcchhHHHHHcC
Q psy13271 14 AKEALIKALDDAGISINQVQQACCGYVYGD-STCGQRALYQIG 55 (110)
Q Consensus 14 ~~~a~~~al~~agl~~~~id~vi~~~~~~~-~~~~~~~a~~lg 55 (110)
..+.+.++|+++++.+.+||.|++...... ......+...+|
T Consensus 311 ~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~ 353 (602)
T PF00012_consen 311 IIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG 353 (602)
T ss_dssp THHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT
T ss_pred cccccccccccccccccccceeEEecCcccchhhhhhhhhccc
Confidence 356678899999999999998776433211 112245566777
No 309
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=27.57 E-value=95 Score=19.54 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCCccccCeEEEEeecC
Q psy13271 15 KEALIKALDDAGISINQVQQACCGYVYG 42 (110)
Q Consensus 15 ~~a~~~al~~agl~~~~id~vi~~~~~~ 42 (110)
++.+.++|++-||+++.++.+.++..-+
T Consensus 80 ~~~lke~l~elgie~eRv~~~wiSa~E~ 107 (132)
T COG1908 80 MELLKELLKELGIEPERVRVLWISAAEG 107 (132)
T ss_pred HHHHHHHHHHhCCCcceEEEEEEehhhH
Confidence 4567889999999999999998865533
No 310
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=27.55 E-value=55 Score=23.73 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=30.5
Q ss_pred hHHHHHcCCCCCCeeeEeccchHHHHHHHHHHHHHHcC-CCeEEEEe
Q psy13271 48 QRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALG 93 (110)
Q Consensus 48 ~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g 93 (110)
..++.++|.+ .++ +|+||..||+.|...+.-+ -+.|++-.
T Consensus 32 ~~~a~~~g~~--~~~----~~~sgt~Al~~al~~l~~~~gdeVi~p~ 72 (363)
T PF01041_consen 32 KEFAEYFGVK--YAV----AVSSGTSALHLALRALGLGPGDEVIVPA 72 (363)
T ss_dssp HHHHHHHTSS--EEE----EESSHHHHHHHHHHHTTGGTTSEEEEES
T ss_pred HHHHHHhCCC--eEE----EeCChhHHHHHHHHhcCCCcCceEecCC
Confidence 4567788865 333 6789999999999998877 78887654
No 311
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=26.91 E-value=1.5e+02 Score=20.03 Aligned_cols=30 Identities=30% Similarity=0.202 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCCccccCeEEEEeec
Q psy13271 12 ELAKEALIKALDDAGISINQVQQACCGYVY 41 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~~~id~vi~~~~~ 41 (110)
+...+++++++++++.++.+|.+|-+.+..
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~I~aI~is~~~ 79 (245)
T PF00370_consen 50 EAICEALKELLSQAGIDPEQIKAIGISGQG 79 (245)
T ss_dssp HHHHHHHHHHHHHCTSCGGGEEEEEEEE-S
T ss_pred HHHHHHHHHHHhhcCcccceeEEEEecccc
Confidence 355677888888899999999999886654
No 312
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=26.80 E-value=65 Score=19.36 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCeEEEEeecCCCcchhHHHH---HcCCCCCCeeeEeccchHHHHHH
Q psy13271 10 YPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALY---QIGMTGIPVFNVNNNCSTGSSAL 75 (110)
Q Consensus 10 ~~~l~~~a~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~a~---~lg~~~~~~~~i~~~C~sg~~al 75 (110)
..++..+.....++. + .+|.+++|+.......+..+.. ..|+. ..+++..+||.+...-+
T Consensus 36 ~~~l~~~~l~~~~~~---~--~peiliiGTG~~~~~~~~~~~~~l~~~gI~-vE~m~T~aAcrTyNiL~ 98 (109)
T cd00248 36 LSDLDPEALLPLLAE---D--RPDILLIGTGAEIAFLPRALRAALRAAGIG-VEVMSTGAACRTYNVLL 98 (109)
T ss_pred cccCCHHHHHHHHhh---C--CCCEEEEcCCCCCCcCCHHHHHHHHHcCCe-EEEeCcHHHHHHHHHHH
Confidence 334444444444442 1 3789999987655444444433 34553 56777788998876544
No 313
>PLN02160 thiosulfate sulfurtransferase
Probab=26.64 E-value=62 Score=20.12 Aligned_cols=30 Identities=17% Similarity=0.400 Sum_probs=22.7
Q ss_pred EeccchHHHHHHHHHHHHHHcC-CCeEEEEe
Q psy13271 64 VNNNCSTGSSALMLAKQFIESG-SDCTLALG 93 (110)
Q Consensus 64 i~~~C~sg~~al~~A~~~i~sG-~~~vlv~g 93 (110)
+-.-|.+|..+...+..+.+.| -++..+.|
T Consensus 84 IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~G 114 (136)
T PLN02160 84 ILVGCQSGARSLKATTELVAAGYKKVRNKGG 114 (136)
T ss_pred EEEECCCcHHHHHHHHHHHHcCCCCeeecCC
Confidence 4457999999999888888889 66554433
No 314
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=26.55 E-value=78 Score=18.93 Aligned_cols=45 Identities=11% Similarity=0.006 Sum_probs=26.8
Q ss_pred cccCeEEEEeecCCCcchhHHHHH---cCCCCCCeeeEeccchHHHHHH
Q psy13271 30 NQVQQACCGYVYGDSTCGQRALYQ---IGMTGIPVFNVNNNCSTGSSAL 75 (110)
Q Consensus 30 ~~id~vi~~~~~~~~~~~~~~a~~---lg~~~~~~~~i~~~C~sg~~al 75 (110)
..+|.+++|+.......+..+..+ .|+. ...++..+||.+...-+
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~-ve~m~T~~Ac~tyN~L~ 99 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIG-VEVMDTPAACRTYNILA 99 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-E-EEEE-HHHHHHHHHHHH
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCe-EEEECHHHHHHHHHHHH
Confidence 467999999976555555555544 3442 45667778888776443
No 315
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=26.53 E-value=90 Score=22.62 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=16.6
Q ss_pred eeEeccchHHHHHHHHHHHHHHcCCCeEEEE
Q psy13271 62 FNVNNNCSTGSSALMLAKQFIESGSDCTLAL 92 (110)
Q Consensus 62 ~~i~~~C~sg~~al~~A~~~i~sG~~~vlv~ 92 (110)
..++-||.||.-+|..+ +.|+..++.+
T Consensus 165 ~vlDvGcGSGILaIAa~----kLGA~~v~g~ 191 (300)
T COG2264 165 TVLDVGCGSGILAIAAA----KLGAKKVVGV 191 (300)
T ss_pred EEEEecCChhHHHHHHH----HcCCceEEEe
Confidence 34566999999777543 4464444443
No 316
>KOG1205|consensus
Probab=26.49 E-value=1.2e+02 Score=21.76 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=19.8
Q ss_pred EeccchHHHHHHHHHHHHHHcCCCeEEEEe
Q psy13271 64 VNNNCSTGSSALMLAKQFIESGSDCTLALG 93 (110)
Q Consensus 64 i~~~C~sg~~al~~A~~~i~sG~~~vlv~g 93 (110)
+-+||+||+ +-+.|+.+.+.|+..+++++
T Consensus 16 vITGASsGI-G~~lA~~la~~G~~l~lvar 44 (282)
T KOG1205|consen 16 LITGASSGI-GEALAYELAKRGAKLVLVAR 44 (282)
T ss_pred EEeCCCcHH-HHHHHHHHHhCCCceEEeeh
Confidence 345776765 66778899999955555544
No 317
>PRK09425 prpD 2-methylcitrate dehydratase; Provisional
Probab=26.16 E-value=93 Score=23.88 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEe
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGY 39 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~ 39 (110)
+-....+=+++++.++.++.+++++||+.|.+.+
T Consensus 288 p~C~~~H~aida~~~L~~~~~i~~~dI~~I~v~~ 321 (480)
T PRK09425 288 PAEFHAQTAVEAAVTLHPQVKARLDDIERITIRT 321 (480)
T ss_pred ccccccchHHHHHHHHHHHhCCCHHHccEEEEEe
Confidence 4445556678888888888899999999987765
No 318
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=25.16 E-value=1e+02 Score=17.50 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEe
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGY 39 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~ 39 (110)
++++..+ +..+++++-|+.++.+|....|+
T Consensus 18 pG~ti~d----~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 18 PGESIRD----LLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred CCCCHHH----HHHHHHHHcCCChhHEEEEEecC
Confidence 4455544 45678899999999999888765
No 319
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=25.10 E-value=64 Score=20.91 Aligned_cols=16 Identities=38% Similarity=0.804 Sum_probs=11.9
Q ss_pred HHHHcCCCCCCeeeEe
Q psy13271 50 ALYQIGMTGIPVFNVN 65 (110)
Q Consensus 50 ~a~~lg~~~~~~~~i~ 65 (110)
.+..+|+.++|.+.++
T Consensus 167 ~a~~~gv~G~Pt~vv~ 182 (201)
T cd03024 167 RARQLGISGVPFFVFN 182 (201)
T ss_pred HHHHCCCCcCCEEEEC
Confidence 3456788888888886
No 320
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=25.03 E-value=24 Score=23.60 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=12.1
Q ss_pred HHHHcCCCCCCeeeEe
Q psy13271 50 ALYQIGMTGIPVFNVN 65 (110)
Q Consensus 50 ~a~~lg~~~~~~~~i~ 65 (110)
.+..+|++++|.+-|+
T Consensus 159 ~a~~~gI~gtPtfiIn 174 (207)
T PRK10954 159 AAADLQLRGVPAMFVN 174 (207)
T ss_pred HHHHcCCCCCCEEEEC
Confidence 3456888888888875
No 321
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=24.52 E-value=1e+02 Score=15.07 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCCccccCeEE
Q psy13271 17 ALIKALDDAGISINQVQQAC 36 (110)
Q Consensus 17 a~~~al~~agl~~~~id~vi 36 (110)
.+.++|++.|+...+-|-|.
T Consensus 19 tV~~~L~~~gI~l~~~D~v~ 38 (43)
T PF03990_consen 19 TVGDALKELGITLGEEDKVS 38 (43)
T ss_pred CHHHHHHhCCCCCCCCCEEe
Confidence 35688999999887777654
No 322
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=24.11 E-value=30 Score=23.04 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=11.8
Q ss_pred HHHcCCCCCCeeeEec
Q psy13271 51 LYQIGMTGIPVFNVNN 66 (110)
Q Consensus 51 a~~lg~~~~~~~~i~~ 66 (110)
+..+|+.++|.|.+++
T Consensus 172 A~~~Gv~GVP~fvv~~ 187 (209)
T cd03021 172 ALKYGAFGLPWIVVTN 187 (209)
T ss_pred HHHcCCCCCCEEEEEc
Confidence 3457888888888864
No 323
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=24.02 E-value=1.3e+02 Score=21.69 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEE
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACC 37 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~ 37 (110)
.+.++.+-+.++..+++++.|+..++++.++.
T Consensus 62 tg~~~~~~a~~~l~~~l~~~g~~~~~v~~~~~ 93 (293)
T TIGR03192 62 TGNNSPDSAKNALQGIMDKIGMKLEDINYVVG 93 (293)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcccceEEEEE
Confidence 45567788889999999999998888887653
No 324
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=23.59 E-value=93 Score=20.67 Aligned_cols=27 Identities=30% Similarity=0.387 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEEEeec
Q psy13271 69 STGSSALMLAKQFIESGSDCTLALGFE 95 (110)
Q Consensus 69 ~sg~~al~~A~~~i~sG~~~vlv~g~e 95 (110)
+||-.+...|..+.+.|+++.++.|--
T Consensus 27 SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 27 SSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp --SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 688889999999999998888888763
No 325
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=23.54 E-value=18 Score=19.86 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHcCCCcccc
Q psy13271 13 LAKEALIKALDDAGISINQV 32 (110)
Q Consensus 13 l~~~a~~~al~~agl~~~~i 32 (110)
|.-..+.+||+ +|++|++|
T Consensus 31 LGgrT~~eAL~-~G~dpr~V 49 (63)
T PF11248_consen 31 LGGRTAAEALE-AGVDPRDV 49 (63)
T ss_pred cCCcCHHHHHH-cCCCHHHH
Confidence 33344455554 46665543
No 326
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=23.41 E-value=72 Score=18.27 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=19.8
Q ss_pred HHHHHHHHcCCCccccCeEEEEee
Q psy13271 17 ALIKALDDAGISINQVQQACCGYV 40 (110)
Q Consensus 17 a~~~al~~agl~~~~id~vi~~~~ 40 (110)
.+...++.-|++..+|+.|++...
T Consensus 34 tvkd~IEsLGVP~tEV~~i~vNG~ 57 (81)
T PF14451_consen 34 TVKDVIESLGVPHTEVGLILVNGR 57 (81)
T ss_pred cHHHHHHHcCCChHHeEEEEECCE
Confidence 467788999999999999987543
No 327
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=23.04 E-value=1.6e+02 Score=18.84 Aligned_cols=30 Identities=3% Similarity=0.025 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHHHcCCCccccCeEEE
Q psy13271 8 TDYPELAKEALIKALDDAGISINQVQQACC 37 (110)
Q Consensus 8 ~~~~~l~~~a~~~al~~agl~~~~id~vi~ 37 (110)
....+...+.+.+.|++.|++.++++.+.+
T Consensus 19 ~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~V 48 (141)
T PLN02404 19 EIITKNLLEGALETFKRYSVKEENIDVVWV 48 (141)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceEEEEc
Confidence 455677788888999999988777776654
No 328
>PRK15173 peptidase; Provisional
Probab=22.82 E-value=1.2e+02 Score=21.88 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=24.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCcccc
Q psy13271 3 KPKEDTDYPELAKEALIKALDDAGISINQV 32 (110)
Q Consensus 3 ~~~~~~~~~~l~~~a~~~al~~agl~~~~i 32 (110)
+.+++.++.+.....+.++|++.|+....|
T Consensus 29 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~ri 58 (323)
T PRK15173 29 KERPIGPPIESVCNILKDALNDARVLNKKI 58 (323)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHcCccCCEE
Confidence 445778889999999999999999866544
No 329
>KOG0100|consensus
Probab=22.81 E-value=82 Score=24.32 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=18.4
Q ss_pred HHHHHHHHHcCCCccccCeEEE
Q psy13271 16 EALIKALDDAGISINQVQQACC 37 (110)
Q Consensus 16 ~a~~~al~~agl~~~~id~vi~ 37 (110)
.-++++|+++++..+|||-++.
T Consensus 347 kPv~kvl~Ds~lkKsdideiVL 368 (663)
T KOG0100|consen 347 KPVQKVLEDSDLKKSDIDEIVL 368 (663)
T ss_pred HHHHHHHhhcCcccccCceEEE
Confidence 3378899999999999997664
No 330
>PF03972 MmgE_PrpD: MmgE/PrpD family; InterPro: IPR005656 This entry represents proteins from the MmgE/PrpD family, which includes 2-methylcitrate dehydratase (PrpD; 4.2.1.79 from EC). PrpD is required for propionate catabolism, catalysing the third step of the 2-methylcitric acid cycle []. This enzyme consists of two domains: a large domain with an all-helical fold and a smaller domain that folds into an alpha+beta domain [].; GO: 0047547 2-methylcitrate dehydratase activity, 0019543 propionate catabolic process; PDB: 1SZQ_B 2HP3_B 2HP0_A.
Probab=22.58 E-value=85 Score=23.70 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCccccCeEEEEe
Q psy13271 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGY 39 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~ 39 (110)
+-....+-++++++++.++.+++++||+.|.+-+
T Consensus 265 p~c~~~h~~ida~~~L~~~~~~~~~dI~~I~v~~ 298 (445)
T PF03972_consen 265 PACRHTHSAIDAALALRKEHGIDPDDIESIEVET 298 (445)
T ss_dssp SS-CCCHHHHHHHHHHHHHHCCTGGGEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHHHHhcCCHhheeEEEEEE
Confidence 4555567788999999999999999999887754
No 331
>PF06568 DUF1127: Domain of unknown function (DUF1127); InterPro: IPR009506 This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.
Probab=22.41 E-value=57 Score=15.83 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=11.2
Q ss_pred HHHHHHcCCCccccC
Q psy13271 19 IKALDDAGISINQVQ 33 (110)
Q Consensus 19 ~~al~~agl~~~~id 33 (110)
...|+|-|++.+||+
T Consensus 25 d~~L~DIGl~R~di~ 39 (40)
T PF06568_consen 25 DRQLADIGLTRSDIR 39 (40)
T ss_pred HHHHHHcCCCHHHhc
Confidence 356788888888775
No 332
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=22.30 E-value=88 Score=18.83 Aligned_cols=43 Identities=14% Similarity=0.093 Sum_probs=26.9
Q ss_pred cCeEEEEeecCCCcchhHHHH---HcCCCCCCeeeEeccchHHHHHH
Q psy13271 32 VQQACCGYVYGDSTCGQRALY---QIGMTGIPVFNVNNNCSTGSSAL 75 (110)
Q Consensus 32 id~vi~~~~~~~~~~~~~~a~---~lg~~~~~~~~i~~~C~sg~~al 75 (110)
+|.+++|+.......+..+.. ..|+. ..+++..++|.+...-+
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gi~-vE~m~T~~AcrTyN~L~ 98 (109)
T cd05560 53 PEVILLGTGERQRFPPPALLAPLLARGIG-VEVMDTQAACRTYNILM 98 (109)
T ss_pred CCEEEEecCCCCCcCCHHHHHHHHHcCCe-EEEECHHHHHHHHHHHH
Confidence 578999987555444444433 34553 46777778888776443
No 333
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=21.93 E-value=2e+02 Score=20.39 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCccccCeEEE
Q psy13271 7 DTDYPELAKEALIKALDDAGISINQVQQACC 37 (110)
Q Consensus 7 ~~~~~~l~~~a~~~al~~agl~~~~id~vi~ 37 (110)
..++.+-+.++..++++++|+...+++.++.
T Consensus 37 ~~~~~~~~~~~l~~~~~~~g~~~~~i~~i~~ 67 (262)
T TIGR02261 37 QRDPFKLAEDAYDDLLEEAGLAAADVAYCAT 67 (262)
T ss_pred CCCHHHHHHHHHHHHHHHcCCChhheEEEEE
Confidence 4567777888999999999998888887654
No 334
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=21.71 E-value=1.8e+02 Score=17.51 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCccccCeEEEEee
Q psy13271 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYV 40 (110)
Q Consensus 7 ~~~~~~l~~~a~~~al~~agl~~~~id~vi~~~~ 40 (110)
+..+.+-+++...+.|.+.|.+++++.+-++|..
T Consensus 15 ~~rY~d~ai~~ll~~m~~~Ga~~~~l~aklfGGa 48 (114)
T PF03975_consen 15 PGRYGDTAIELLLDEMEKRGARPSRLEAKLFGGA 48 (114)
T ss_dssp CCCBHHHHHHHHHHHHHTTT--GGG-EEEEEE--
T ss_pred CccCHHHHHHHHHHHHHHcCCCHHHeEEEEeeCc
Confidence 3456778888889999999999999998888753
No 335
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=21.70 E-value=1.4e+02 Score=18.32 Aligned_cols=33 Identities=12% Similarity=0.011 Sum_probs=21.2
Q ss_pred eccchHHHHHHHHHHHHHHcCCCeEEEEeeccC
Q psy13271 65 NNNCSTGSSALMLAKQFIESGSDCTLALGFEKM 97 (110)
Q Consensus 65 ~~~C~sg~~al~~A~~~i~sG~~~vlv~g~e~~ 97 (110)
.....+...-|..|...+..|++.|+++|.|..
T Consensus 39 ~Q~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P 71 (122)
T PF09837_consen 39 PQQGGDLGERMANAFQQAARGYEPVVLIGSDCP 71 (122)
T ss_dssp E--SSSHHHHHHHHHHHHHTT-SEEEEE-SS-T
T ss_pred ecCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCC
Confidence 345566777788888877666779999998863
No 336
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=21.66 E-value=35 Score=22.01 Aligned_cols=19 Identities=16% Similarity=0.531 Sum_probs=13.1
Q ss_pred HHHHcCCCCCCeeeEeccc
Q psy13271 50 ALYQIGMTGIPVFNVNNNC 68 (110)
Q Consensus 50 ~a~~lg~~~~~~~~i~~~C 68 (110)
.+..+|+.+.|.+-+....
T Consensus 161 ~a~~~gv~g~Ptfvv~~~~ 179 (193)
T cd03025 161 LARELGINGFPTLVLEDDN 179 (193)
T ss_pred HHHHcCCCccCEEEEEeCC
Confidence 3456788888888776543
No 337
>KOG0102|consensus
Probab=21.26 E-value=69 Score=25.44 Aligned_cols=74 Identities=23% Similarity=0.096 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCCccccCeEEEEeecCCC-cchhHHHHHcCCCCCCeeeEeccchHHHHHHHHH-HHHHHcC-CCeEEE
Q psy13271 15 KEALIKALDDAGISINQVQQACCGYVYGDS-TCGQRALYQIGMTGIPVFNVNNNCSTGSSALMLA-KQFIESG-SDCTLA 91 (110)
Q Consensus 15 ~~a~~~al~~agl~~~~id~vi~~~~~~~~-~~~~~~a~~lg~~~~~~~~i~~~C~sg~~al~~A-~~~i~sG-~~~vlv 91 (110)
.+=++++|++|++..+||+-|+.-..+.-. -.-..+...+|-. |.-.++..-+. |+..| ..-+.+| .+-++.
T Consensus 337 i~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~--p~~~vnPdeav---a~GAaiqggvl~geVkdvlL 411 (640)
T KOG0102|consen 337 IEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKG--PSKGVNPDEAV---AGGAAIQGGVLSGEVKDVLL 411 (640)
T ss_pred hhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCC--CCCCcCCcchh---ccchhhccchhhccccceee
Confidence 344789999999999999977653222111 0112345566654 33334322211 22112 2245677 666665
Q ss_pred Ee
Q psy13271 92 LG 93 (110)
Q Consensus 92 ~g 93 (110)
.-
T Consensus 412 Ld 413 (640)
T KOG0102|consen 412 LD 413 (640)
T ss_pred ee
Confidence 43
No 338
>COG1665 Predicted nucleotidyltransferase [General function prediction only]
Probab=21.08 E-value=1.6e+02 Score=21.31 Aligned_cols=27 Identities=26% Similarity=0.553 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHcCCCc-----------------cccCeEEEE
Q psy13271 12 ELAKEALIKALDDAGISI-----------------NQVQQACCG 38 (110)
Q Consensus 12 ~l~~~a~~~al~~agl~~-----------------~~id~vi~~ 38 (110)
++.+.++.+.|+++|++. +|||.||+|
T Consensus 104 ~~~~rai~~~led~gVp~~~mGVTGSiL~gl~~~nSDIDfVVYG 147 (315)
T COG1665 104 ESKARAIVEFLEDAGVPVNSMGVTGSILLGLYDENSDIDFVVYG 147 (315)
T ss_pred HHHHHHHHHHHHHcCCchhhccccccccccccCCCCCceEEEEc
Confidence 677888889999988763 567777776
No 339
>PF09861 DUF2088: Domain of unknown function (DUF2088); InterPro: IPR018657 This domain, found in various hypothetical proteins, has no known function. ; PDB: 2YJG_B.
Probab=21.05 E-value=1.3e+02 Score=20.40 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHHHcCCCccccCeEEE
Q psy13271 9 DYPELAKEALIKALDDAGISINQVQQACC 37 (110)
Q Consensus 9 ~~~~l~~~a~~~al~~agl~~~~id~vi~ 37 (110)
.+.+....++.+.|+++|++.++|..|+-
T Consensus 68 ~p~~~il~~ll~~L~~~Gv~~~~i~ii~A 96 (204)
T PF09861_consen 68 TPSDLILPALLEELEEAGVKDEDITIIIA 96 (204)
T ss_dssp --HHHHHHHHHHHHHT-T-TT-EEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCccCEEEEEe
Confidence 55578888999999999999999887764
No 340
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=20.83 E-value=1.8e+02 Score=18.47 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHHcCCCccccCeEEE
Q psy13271 8 TDYPELAKEALIKALDDAGISINQVQQACC 37 (110)
Q Consensus 8 ~~~~~l~~~a~~~al~~agl~~~~id~vi~ 37 (110)
....+...+.+.+.|++.|+..++|+-+.+
T Consensus 12 ~~i~~~L~~ga~~~l~~~g~~~~~i~v~~V 41 (138)
T TIGR00114 12 RDITDMLLKGAIDALKRLGAEVDNIDVIWV 41 (138)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 455677788889999999988887776654
No 341
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=20.61 E-value=64 Score=19.05 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=20.1
Q ss_pred cchHHHHHHHHHHHHHHcC-CCeEEEEeec
Q psy13271 67 NCSTGSSALMLAKQFIESG-SDCTLALGFE 95 (110)
Q Consensus 67 ~C~sg~~al~~A~~~i~sG-~~~vlv~g~e 95 (110)
-|.+|..+-..+..+.+.| -++.+.+|.+
T Consensus 64 yC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 93 (101)
T TIGR02981 64 YCNAGRQSGMAKDILLDMGYTHAENAGGIK 93 (101)
T ss_pred EeCCCHHHHHHHHHHHHcCCCeEEecCCHH
Confidence 5888888877777788888 5555544433
No 342
>KOG2839|consensus
Probab=20.30 E-value=1.7e+02 Score=18.89 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=16.8
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcc
Q psy13271 6 EDTDYPELAKEALIKALDDAGISIN 30 (110)
Q Consensus 6 ~~~~~~~l~~~a~~~al~~agl~~~ 30 (110)
+|++..+ .|.+++++.||+...
T Consensus 47 ~dE~~~e---AA~REt~EEAGv~G~ 68 (145)
T KOG2839|consen 47 PDESVEE---AALRETWEEAGVKGK 68 (145)
T ss_pred CCCCHHH---HHHHHHHHHhCceee
Confidence 5666665 678999999998654
Done!