RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13271
(110 letters)
>gnl|CDD|181327 PRK08256, PRK08256, lipid-transfer protein; Provisional.
Length = 391
Score = 191 bits (487), Expect = 3e-61
Identities = 68/106 (64%), Positives = 83/106 (78%), Gaps = 1/106 (0%)
Query: 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIP 60
F+KP DYP++A EA AL DAGI + VQQA GYVYGDST GQRALY++GMTGIP
Sbjct: 13 FEKPGASWDYPDMAAEAGRAALADAGIDYDAVQQAYVGYVYGDSTSGQRALYEVGMTGIP 72
Query: 61 VFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKMEKGSLGAK 105
+ NVNNNCSTGS+AL LA+Q + SG +DC LALGFE+M+ G+LG+
Sbjct: 73 IVNVNNNCSTGSTALFLARQAVRSGAADCALALGFEQMQPGALGSV 118
>gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
carrier protein (SCP)-x isoform and related proteins;
SCP-2 has multiple roles in intracellular lipid
circulation and metabolism. The N-terminal presequence
in the SCP-x isoform represents a peroxisomal
3-ketacyl-Coa thiolase specific for branched-chain acyl
CoAs, which is proteolytically cleaved from the sterol
carrier protein.
Length = 375
Score = 110 bits (278), Expect = 1e-30
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGD---STCGQRALYQIGMT 57
F + D ELA EA ALDDAG+ + G G S G +G+
Sbjct: 8 FGRR-SDRSPLELAAEAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGLL 66
Query: 58 GIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKMEKGSLGAK 105
G P V ++GS+A+ A I SG +D L +G EKM G +
Sbjct: 67 GKPATRVEAAGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDVPTGDE 115
>gnl|CDD|238422 cd00826, nondecarbox_cond_enzymes, nondecarboxylating condensing
enzymes; In general, thiolases catalyze the reversible
thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and
acetyl-CoA, a 2-step reaction involving a covalent
intermediate formed with a catalytic cysteine. There are
2 functional different classes: thiolase-I
(3-ketoacyl-CoA thiolase) and thiolase-II
(acetoacetyl-CoA thiolase). Thiolase-I can cleave longer
fatty acid molecules and plays an important role in the
beta-oxidative degradation of fatty acids. Thiolase-II
has a high substrate specificity. Although it can cleave
acetoacyl-CoA, its main function is the synthesis of
acetoacyl-CoA from two molecules of acetyl-CoA, which
gives it importance in several biosynthetic pathways.
Length = 393
Score = 89.9 bits (222), Expect = 1e-22
Identities = 40/99 (40%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 9 DYPELAKEALIKALDDA----GISINQVQQACCGYVYGD---STCGQRALYQ-IGMTGIP 60
D +LA EA KA+ A G++ V++AC G V G C Q+A G+ P
Sbjct: 18 DANDLAHEAGAKAIAAALEPAGVAAGAVEEACLGQVLGAGEGQNCAQQAAMHAGGLQEAP 77
Query: 61 VFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKME 98
+NN C +G AL LA Q I G ++C LA GFEKME
Sbjct: 78 AIGMNNLCGSGLRALALAMQLIAGGDANCILAGGFEKME 116
>gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
catalyze a (decarboxylating or non-decarboxylating)
Claisen-like condensation reaction. Members are share
strong structural similarity, and are involved in the
synthesis and degradation of fatty acids, and the
production of polyketides, a diverse group of natural
products.
Length = 254
Score = 81.7 bits (202), Expect = 3e-20
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGD---STCGQRALYQIGMTGIPVFNVNNN 67
EL EA +A+ DAG+S + G G S + Y +G++G P ++VN
Sbjct: 8 SELGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGISGGPAYSVNQA 67
Query: 68 CSTGSSALMLAKQFIESG-SDCTLALGFEK 96
C+TG +AL LA Q +++G +D LA G E+
Sbjct: 68 CATGLTALALAVQQVQNGKADIVLAGGSEE 97
>gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism].
Length = 392
Score = 65.0 bits (159), Expect = 1e-13
Identities = 39/104 (37%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 7 DTDYPELAKEALIKALDDAGISIN-------QVQQACCGYVYGDSTCGQ----RALYQIG 55
D ELA EAL AL DAG+ V G V GQ +A G
Sbjct: 19 DGSLAELAAEALGAALIDAGLERAPADVDAADVDDVILGCVLQAGEQGQNIARQAALAAG 78
Query: 56 MTG-IPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
+ G +P VN C++G +A+ LA Q I SG +D LA G EKM
Sbjct: 79 LPGSVPAVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVEKM 122
>gnl|CDD|235688 PRK06064, PRK06064, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 58.4 bits (142), Expect = 3e-11
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQI-----GMTGIPV 61
D +LA EA ++AL+DAGI + G + Q + + G+ IP
Sbjct: 19 DVSLRDLAVEAGLEALEDAGIDGKDIDAMYVGNMSAGLFVSQEHIAALIADYAGLAPIPA 78
Query: 62 FNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
V C++G +AL A + SG +D LA G EKM
Sbjct: 79 TRVEAACASGGAALRQAYLAVASGEADVVLAAGVEKM 115
>gnl|CDD|180433 PRK06157, PRK06157, acetyl-CoA acetyltransferase; Validated.
Length = 398
Score = 55.4 bits (134), Expect = 2e-10
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRAL---YQIGMTGIPVFN 63
D +L EA ++AL DAGI + A G Y + G+ + + IPV
Sbjct: 24 DAGAEDLMVEAFLEALADAGIEPKDIDAAWFGTHYDEIGSGKSGTPLSRALRLPNIPVTR 83
Query: 64 VNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
V N C+TGS A A + SG+ D LALG EK+
Sbjct: 84 VENFCATGSEAFRGAVYAVASGAYDIALALGVEKL 118
>gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze
the reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and eukaryotes (cytosol,
microbodies and mitochondria). There are 2 functional
different classes: thiolase-I (3-ketoacyl-CoA thiolase)
and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I
can cleave longer fatty acid molecules and plays an
important role in the beta-oxidative degradation of
fatty acids. Thiolase-II has a high substrate
specificity. Although it can cleave acetoacyl-CoA, its
main function is the synthesis of acetoacyl-CoA from two
molecules of acetyl-CoA, which gives it importance in
several biosynthetic pathways.
Length = 386
Score = 49.4 bits (119), Expect = 4e-08
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGM-TGIPV----FNVN 65
+L + L+ AG+ +V G V + GQ Q + G+P VN
Sbjct: 23 DDLGAAVIKALLERAGLDPEEVDDVIMGNVLQ-AGEGQNPARQAALLAGLPESVPATTVN 81
Query: 66 NNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
C +G A+ LA Q I +G +D +A G E M
Sbjct: 82 RVCGSGLQAVALAAQSIAAGEADVVVAGGVESM 114
>gnl|CDD|183606 PRK12578, PRK12578, acetyl-CoA acetyltransferase; Provisional.
Length = 385
Score = 47.1 bits (112), Expect = 2e-07
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 5 KEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRA--LYQI-------G 55
++D ELA E++ +AL+DAG+S ++ G + R LY G
Sbjct: 16 RDDVSVQELAWESIKEALNDAGVSQTDIELVVVG------STAYRGIELYPAPIVAEYSG 69
Query: 56 MTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
+TG V C+TG +A + A + SG D +A+G +KM
Sbjct: 70 LTGKVPLRVEAMCATGLAASLTAYTAVASGLVDMAIAVGVDKM 112
>gnl|CDD|238423 cd00827, init_cond_enzymes, "initiating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type III and
polyketide synthases, type III, which include chalcone
synthase and related enzymes. They are characterized by
the utlization of CoA substrate primers, as well as the
nature of their active site residues.
Length = 324
Score = 46.7 bits (111), Expect = 3e-07
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQI----GMTGIPV 61
+D D P +A EA +AL+ AGI + + G+ A + G+T
Sbjct: 44 DDEDVPTMAVEAARRALERAGIDPDDIGLLIVATESPIDK-GKSAATYLAELLGLTNAEA 102
Query: 62 FNVNNNCSTGSSALMLAKQFIESGSD 87
F++ C G++AL LA +ESG
Sbjct: 103 FDLKQACYGGTAALQLAANLVESGPW 128
>gnl|CDD|223409 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein].
Length = 323
Score = 46.5 bits (111), Expect = 4e-07
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDSTC---GQRALYQIGMTGIPVFNVNNNC 68
+LA EA KAL+DAGIS + + D ++G+ G P F++ C
Sbjct: 54 DLAVEAARKALEDAGISPDDIDLIIVATSTPDHLFPSTACLVQARLGLGGAPAFDLQAAC 113
Query: 69 STGSSALMLAKQFIESGS 86
S AL +A I SG
Sbjct: 114 SGFLYALSVADGLIRSGG 131
>gnl|CDD|235785 PRK06365, PRK06365, acetyl-CoA acetyltransferase; Provisional.
Length = 430
Score = 46.4 bits (110), Expect = 4e-07
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQ---RALYQ--IG 55
F K D+ E K+A A++DAG+++ + + Y + D Q + Q +G
Sbjct: 28 FDKASPYMDFRERVKKAFDYAMNDAGLTLADIDGSVASY-FSDHFQRQLLAGIMVQDYLG 86
Query: 56 MTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKMEK 99
+ P + +TG A + I SG DC GFE M
Sbjct: 87 LVPKPSKRIEGGGATGGLAFQAGYEEIASGRMDCVAVYGFETMSH 131
>gnl|CDD|180373 PRK06059, PRK06059, lipid-transfer protein; Provisional.
Length = 399
Score = 42.4 bits (100), Expect = 8e-06
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 9 DYPELAKEALIKALDDAGISINQVQ---------QACCGYVYGDSTCGQRALYQIGMTGI 59
D+ E A AL DAG+ VQ G+V G +T Q +G G
Sbjct: 22 DFVEYGVVAARAALADAGLDWRDVQLVVGADTIRNGYPGFVAG-ATFAQA----LGWNGA 76
Query: 60 PVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKMEKG 100
PV + C++GS AL A+ I +G D L +G + KG
Sbjct: 77 PVSSSYAACASGSQALQSARAQILAGLCDVALVVGADTTPKG 118
>gnl|CDD|215722 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 262
Score = 42.3 bits (100), Expect = 1e-05
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIG-MTGIPV---- 61
D +L A+ AL+ AG+ V + G V + GQ Q GIP
Sbjct: 21 DLSAVDLGAIAIKAALERAGVKPEDVDEVIMGNVL-QAGEGQNPARQAALKAGIPDSVPA 79
Query: 62 FNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
+N C +G A+ LA Q I +G +D +A G E M
Sbjct: 80 VTINKVCGSGLKAVALAAQAIRAGDADIVVAGGVESM 116
>gnl|CDD|238426 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III
(KASIII) initiates the elongation in type II fatty acid
synthase systems. It is found in bacteria and plants.
Elongation of fatty acids in the type II systems occurs
by Claisen condensation of malonyl-acyl carrier protein
(ACP) with acyl-ACP. KASIII initiates this process by
specifically using acetyl-CoA over acyl-CoA.
Length = 320
Score = 42.1 bits (100), Expect = 1e-05
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 24/102 (23%)
Query: 12 ELAKEALIKALDDAGISINQVQQACCGYVYGD-----STCGQRAL--------YQIGMTG 58
+LA EA KAL+DAGI + + D ++ ++G
Sbjct: 52 DLAVEAAKKALEDAGIDADDI----------DLIIVATSTPDYLFPATACLVQARLGAKN 101
Query: 59 IPVFNVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKMEK 99
F++N CS L A I SG L +G E + +
Sbjct: 102 AAAFDINAACSGFLYGLSTAAGLIRSGGAKNVLVVGAETLSR 143
>gnl|CDD|233113 TIGR00747, fabH, 3-oxoacyl-(acyl-carrier-protein) synthase III.
FabH in general initiate elongation in type II fatty
acid synthase systems found in bacteria and plants. The
two members of this subfamily from Bacillus subtilis
differ from each other, and from FabH from E. coli, in
acyl group specificity. Active site residues include
Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is
the site of acyl group attachment [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 318
Score = 41.6 bits (98), Expect = 2e-05
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 13 LAKEALIKALDDAGISINQ-----VQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNN 67
+ EA +A+++AGIS + V + + + C +A +G+ GIP F+++
Sbjct: 54 MGFEAAKRAIENAGISKDDIDLIIVATTTPDHAFPSAACMVQA--YLGIKGIPAFDLSAA 111
Query: 68 CSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
C+ AL +AKQ+IESG L +G EK+
Sbjct: 112 CAGFIYALSVAKQYIESGKYKTVLVVGAEKL 142
>gnl|CDD|181013 PRK07516, PRK07516, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 41.5 bits (98), Expect = 2e-05
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 16 EALI-----KALDDAGISINQVQ-----QACCGYVYGDSTCGQRALYQIGMTGIPVFNVN 65
E+LI +AL AGI+ V G+ D + P V
Sbjct: 23 ESLIVRVAREALAHAGIAAGDVDGIFLGHFNAGFSPQDFPASLVLQADPALRFKPATRVE 82
Query: 66 NNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
N C+TGS+A+ A IE+G + L +G EKM
Sbjct: 83 NACATGSAAVYAALDAIEAGRARIVLVVGAEKM 115
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 40.5 bits (96), Expect = 4e-05
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGM-TGIPV----FNVN 65
EL + AL+ AG+ QV + G V + GQ Q + G+PV +N
Sbjct: 27 VELGAIVIKAALERAGVPPEQVDEVIMGQVLQ-AGAGQNPARQAALKAGLPVEVPALTIN 85
Query: 66 NNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
C +G A+ LA Q I +G +D +A G E M
Sbjct: 86 KVCGSGLKAVALAAQAIRAGDADIVVAGGQESM 118
>gnl|CDD|215347 PLN02644, PLN02644, acetyl-CoA C-acetyltransferase.
Length = 394
Score = 40.1 bits (94), Expect = 5e-05
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYV----YGDSTCGQRALYQIGMTGIP----VF 62
EL A+ AL+ AG+ VQ+ G V G + Q AL G+P
Sbjct: 26 TELGSIAIQAALERAGVDPALVQEVFFGNVLSANLGQAPARQAAL----GAGLPPSTICT 81
Query: 63 NVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
VN C++G A+MLA Q I+ G D +A G E M
Sbjct: 82 TVNKVCASGMKAVMLAAQSIQLGINDVVVAGGMESM 117
>gnl|CDD|235771 PRK06289, PRK06289, acetyl-CoA acetyltransferase; Provisional.
Length = 403
Score = 39.7 bits (93), Expect = 8e-05
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 5 KEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQR------ALYQIGMTG 58
KE D+ +L +E + L AG+ + ++ G +G+ GQ A + G
Sbjct: 21 KEGRDFADLTREVVDGTLAAAGVDADDIEVVHVGNFFGELFAGQGHLGAMPATVHPALWG 80
Query: 59 IPVFNVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
+P C++GS A + A + +G D L +G E M
Sbjct: 81 VPASRHEAACASGSVATLAAMADLRAGRYDVALVVGVELM 120
>gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases. This
model represents a large family of enzymes which
catalyze the thiolysis of a linear fatty acid CoA (or
acetoacetyl-CoA) using a second CoA molecule to produce
acetyl-CoA and a CoA-ester product two carbons shorter
(or, alternatively, the condensation of two molecules of
acetyl-CoA to produce acetoacetyl-CoA and CoA). This
enzyme is also known as "thiolase", "3-ketoacyl-CoA
thiolase", "beta-ketothiolase" and "Fatty oxidation
complex beta subunit". When catalyzing the degradative
reaction on fatty acids the corresponding EC number is
2.3.1.16. The condensation reaction corresponds to
2.3.1.9. Note that the enzymes which catalyze the
condensation are generally not involved in fatty acid
biosynthesis, which is carried out by a decarboxylating
condensation of acetyl and malonyl esters of acyl
carrier proteins. Rather, this activity may produce
acetoacetyl-CoA for pathways such as IPP biosynthesis in
the absence of sufficient fatty acid oxidation [Fatty
acid and phospholipid metabolism, Other].
Length = 386
Score = 38.4 bits (90), Expect = 2e-04
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 12 ELAKEALIKALDDAGISINQVQQACCGYVY---GDSTCGQRALYQIGM-TGIPVFNVNNN 67
+L + + L+ + + G V ++A G+ +P + VN
Sbjct: 23 DLGAAVIKELLERNPLDPELIDDVIFGNVLQAGEQQNIARQAALLAGLPESVPAYTVNRQ 82
Query: 68 CSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
C++G A++LA Q I +G +D +A G E M
Sbjct: 83 CASGLQAVILAAQLIRAGEADVVVAGGVESM 113
>gnl|CDD|236475 PRK09352, PRK09352, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 319
Score = 37.7 bits (89), Expect = 3e-04
Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 12/101 (11%)
Query: 4 PKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG------QRALYQIGMT 57
P E T LA EA KAL+ AGI + D Q L G
Sbjct: 48 PDETTSD--LATEAAKKALEAAGIDPEDIDLIIVATTTPDYAFPSTACLVQARL---GAK 102
Query: 58 GIPVFNVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
F+++ CS AL A QFI SG+ L +G EK+
Sbjct: 103 NAAAFDLSAACSGFVYALSTADQFIRSGAYKNVLVIGAEKL 143
>gnl|CDD|164577 CHL00203, fabH, 3-oxoacyl-acyl-carrier-protein synthase 3;
Provisional.
Length = 326
Score = 35.7 bits (82), Expect = 0.002
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Query: 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQ--IGMTGIPVFNV 64
T +LA EA KALD A + ++ D G + Q IG T F++
Sbjct: 48 STSLTKLAAEAANKALDKAHMDPLEIDLIILATSTPDDLFGSASQLQAEIGATRAVAFDI 107
Query: 65 NNNCSTGSSALMLAKQFIESGS-DCTLALGFEKMEKGSLGAKSKPV 109
CS AL+ A QFI++GS L +G + + K + K
Sbjct: 108 TAACSGFILALVTATQFIQNGSYKNILVVGADTLSKWIDWSDRKTC 153
>gnl|CDD|181378 PRK08313, PRK08313, acetyl-CoA acetyltransferase; Provisional.
Length = 386
Score = 35.5 bits (82), Expect = 0.003
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 5 KEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYG------DSTCGQRALY---QIG 55
++D L +EA+ +AL DAG++ + + V G + L+ +G
Sbjct: 19 RQDVSMAGLVREAIDRALADAGLTWDDID----AVVVGKAPDFFEGVM-MPELFLADALG 73
Query: 56 MTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKM-EKGSLGAKSKPV 109
TG P+ V+ S G S ++A ++SG LA+ +EK E ++ A S PV
Sbjct: 74 ATGKPLIRVHTAGSVGGSTAVVAASLVQSGVYRRVLAVAWEKQSESNAMWALSIPV 129
>gnl|CDD|102340 PRK06366, PRK06366, acetyl-CoA acetyltransferase; Provisional.
Length = 388
Score = 35.4 bits (81), Expect = 0.003
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVY----GDSTCGQRALYQIGMTGIPVFNVNN 66
P+L A+ +DDA + VQ+ G V G + GQ A + G+ + VN
Sbjct: 27 PQLGGAAIKAVIDDAKLDPALVQEVIMGNVIQAGVGQNPAGQAAYHAGLPFGVTKYTVNV 86
Query: 67 NCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
C++G A+ A + I G D +A G E M
Sbjct: 87 VCASGMLAVESAAREIMLGERDLVIAGGMENM 118
>gnl|CDD|180775 PRK06954, PRK06954, acetyl-CoA acetyltransferase; Provisional.
Length = 397
Score = 34.5 bits (79), Expect = 0.005
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVY----GDSTCGQRALYQIGMTGIPV----F 62
P+L A+ A++ AG+ Q+ + G V G + Q AL G+P+
Sbjct: 32 PQLGAAAIAAAVERAGLKPEQIDEVVMGCVLPAGQGQAPARQAAL----GAGLPLSVGCT 87
Query: 63 NVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
VN C +G A M A + +GS D +A G E M
Sbjct: 88 TVNKMCGSGMRAAMFAHDMLVAGSVDVIVAGGMESM 123
>gnl|CDD|235964 PRK07204, PRK07204, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 329
Score = 34.0 bits (78), Expect = 0.009
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 17/90 (18%)
Query: 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRAL--------YQIGM- 56
E + Y + EA KA++DA ++++ + C S Q+A+ Q+G+
Sbjct: 50 ETSSY--MGAEAAKKAVEDAKLTLDDIDCIICA-----SGTIQQAIPCTASLIQEQLGLQ 102
Query: 57 -TGIPVFNVNNNCSTGSSALMLAKQFIESG 85
+GIP F++N+ C + +AL IE G
Sbjct: 103 HSGIPCFDINSTCLSFITALDTISYAIECG 132
>gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
acids into a large variety of different products, called
polyketides, by successive decarboxylating Claisen
condensations. PKSs can be divided into 2 groups,
modular type I PKSs consisting of one or more large
multifunctional proteins and iterative type II PKSs,
complexes of several monofunctional subunits.
Length = 421
Score = 33.7 bits (78), Expect = 0.009
Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 32/107 (29%)
Query: 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDSTC------------------------- 46
E+A EAL +DAG S + + G G S+
Sbjct: 93 EVAWEAL----EDAGYSPESLAGSRTGVFVGASSSDYLELLARDPDEIDAYAATGTSRAF 148
Query: 47 -GQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIESGSDCTLAL 92
R Y + G P V+ CS+ AL LA Q + SG +C LAL
Sbjct: 149 LANRISYFFDLRG-PSLTVDTACSSSLVALHLACQSLRSG-ECDLAL 193
>gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP)
synthase (KAS), type I and II. KASs are responsible for
the elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen
condensation of malonyl-acyl carrier protein (ACP) with
acyl-ACP.
Length = 406
Score = 32.9 bits (76), Expect = 0.018
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 35/117 (29%)
Query: 13 LAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQ------------------- 53
A A +AL DAG+ ++ G V G G + +
Sbjct: 74 FALAAAEEALADAGLDPEELDPERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVP 133
Query: 54 --------------IGMTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFE 95
+G+ G P + V+ C++G+ A+ A + I G +D +A G E
Sbjct: 134 MALPNMAAGQVAIRLGLRG-PNYTVSTACASGAHAIGDAARLIRLGRADVVIAGGAE 189
>gnl|CDD|237245 PRK12879, PRK12879, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 325
Score = 32.1 bits (74), Expect = 0.029
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 12 ELAKEALIKALDDAGISINQVQQ---ACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNC 68
+LA +A +AL AG+ + A Y + + ++G+ F++N C
Sbjct: 55 DLAIKAAERALARAGLDAEDIDLIIVATTTPDYLFPSTASQVQARLGIPNAAAFDINAAC 114
Query: 69 STGSSALMLAKQFIESGS 86
+ L A I SG
Sbjct: 115 AGFLYGLETANGLITSGL 132
>gnl|CDD|181625 PRK09051, PRK09051, beta-ketothiolase; Provisional.
Length = 394
Score = 32.2 bits (74), Expect = 0.031
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 12 ELAKEALIKALDDAGISINQVQQACCGYVYG----DSTCGQRALYQIGMT-GIPVFNVNN 66
+L + +AL AG+ +QV G+V D + A G+ P FNVN
Sbjct: 29 DLGATVVREALARAGVDPDQVGHVVFGHVIPTEPRDMYLSRVAAINAGVPQETPAFNVNR 88
Query: 67 NCSTGSSALMLAKQFIESG-SDCTLALGFEKMEKG 100
C +G A++ A Q I G +D + G E M +
Sbjct: 89 LCGSGLQAIVSAAQAILLGDADVAIGGGAESMSRA 123
>gnl|CDD|168156 PRK05656, PRK05656, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 32.2 bits (73), Expect = 0.037
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVY----GDSTCGQRALYQIGM 56
FQ + EL + + L+ G+ QV + G V G + Q A+
Sbjct: 17 FQGSLANIPAVELGAAVIRRLLEQTGLDPAQVDEVILGQVLTAGAGQNPARQAAIKAGLP 76
Query: 57 TGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
+P +N C +G AL LA Q I G ++ +A G E M
Sbjct: 77 HSVPAMTLNKVCGSGLKALHLAAQAIRCGDAEVIIAGGQENM 118
>gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes;
Family of enzymes that catalyze the formation of a new
carbon-carbon bond by a decarboxylating Claisen-like
condensation reaction. Members are involved in the
synthesis of fatty acids and polyketides, a diverse
group of natural products. Both pathways are an
iterative series of additions of small carbon units,
usually acetate, to a nascent acyl group. There are 2
classes of decarboxylating condensing enzymes, which can
be distinguished by sequence similarity, type of active
site residues and type of primer units (acetyl CoA or
acyl carrier protein (ACP) linked units).
Length = 332
Score = 31.8 bits (72), Expect = 0.042
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 30/116 (25%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRAL------------------- 51
L EA +A+ DAG+S + G V G R
Sbjct: 12 SILGFEAAERAIADAGLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKAM 71
Query: 52 -----YQI----GMTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
QI G+ G P ++V+ C+ AL LA +++G D LA G E++
Sbjct: 72 FPGASGQIATPLGIHG-PAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEEL 126
>gnl|CDD|235866 PRK06816, PRK06816, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 378
Score = 31.8 bits (73), Expect = 0.049
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDSTC-GQRALYQIGMTGIP---VFNVNNN 67
++A EA+ LDDAG S+ ++ CG D G ++ G G P V +
Sbjct: 65 QMAAEAIRDLLDDAGFSLGDIELLACGTSQPDQLMPGHASMVH-GELGAPPIEVVSSAGV 123
Query: 68 CSTGSSALMLAKQFIESG-SDCTLALGFEK 96
C+ G AL A +++G S +A E
Sbjct: 124 CAAGMMALKYAYLSVKAGESRNAVATASEL 153
>gnl|CDD|203976 pfam08545, ACP_syn_III, 3-Oxoacyl-[acyl-carrier-protein (ACP)]
synthase III. This domain is found on
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
EC:2.3.1.180, the enzyme responsible for initiating the
chain of reactions of the fatty acid synthase in plants
and bacteria.
Length = 80
Score = 30.2 bits (69), Expect = 0.053
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 62 FNVNNNCSTGSSALMLAKQFIESGS 86
F++N CS AL A I SG
Sbjct: 1 FDINAACSGFVYALSTAAALIRSGR 25
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 31.7 bits (72), Expect = 0.062
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 34/109 (31%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVY---------------------------GD 43
E+A EAL +DAGI + ++ + G V+
Sbjct: 96 LEVAWEAL----EDAGIYPDSLRGSATG-VFAGASVADYLLLLLADDEAEPEYAITGNSS 150
Query: 44 STCGQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIESGSDCTLAL 92
S R Y +G++G P V+ CS+ A+ LA Q + G +C LAL
Sbjct: 151 SVAAGRISYVLGLSG-PSVTVDTACSSSLVAVHLACQSLRLG-ECDLAL 197
>gnl|CDD|181311 PRK08235, PRK08235, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 31.2 bits (71), Expect = 0.069
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQ----RALYQIGMT-GIPVFNVN 65
EL A+ +AL+ A +S V++ G V GQ +A G+ + VN
Sbjct: 27 TELGGIAIKEALERANVSAEDVEEVIMGTVL-QGGQGQIPSRQAARAAGIPWEVQTETVN 85
Query: 66 NNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
C++G A+ LA Q I +G + +A G E M
Sbjct: 86 KVCASGLRAVTLADQIIRAGDASVIVAGGMESM 118
>gnl|CDD|178324 PLN02723, PLN02723, 3-mercaptopyruvate sulfurtransferase.
Length = 320
Score = 30.9 bits (70), Expect = 0.096
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 13 LAKEALIKALDDAGISINQVQQACCGYVYGDSTC-GQRALYQIGMTGIPVFN 63
L E L K + GIS++ A CG G + C L+++G T +PV++
Sbjct: 252 LPAEELKKRFEQEGISLDSPIVASCG--TGVTACILALGLHRLGKTDVPVYD 301
>gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal
domain. The structure of beta-ketoacyl synthase is
similar to that of the thiolase family (pfam00108) and
also chalcone synthase. The active site of beta-ketoacyl
synthase is located between the N and C-terminal
domains. The N-terminal domain contains most of the
structures involved in dimer formation and also the
active site cysteine.
Length = 243
Score = 30.3 bits (69), Expect = 0.13
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 52 YQIGMTGIPVFNVNNNCSTGSSALMLAKQFIESGSDCTLAL 92
Y++G+ G P V+ CS+ AL A + I G +C LAL
Sbjct: 149 YRLGLRG-PSVTVDTACSSSLVALHAAVRSIRRG-ECDLAL 187
>gnl|CDD|180595 PRK06504, PRK06504, acetyl-CoA acetyltransferase; Provisional.
Length = 390
Score = 29.7 bits (67), Expect = 0.24
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGI---------PVF 62
+LA + L +D +G ++ G V S G++A + + P
Sbjct: 28 DLAAQVLDALVDRSGADPALIEDVIMGCV---SQVGEQAT-NVARNAVLASKLPESVPGT 83
Query: 63 NVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKMEKGSLGAKS 106
+++ C + AL A Q + SG+ D +A G E M + +G+ S
Sbjct: 84 SIDRQCGSSQQALHFAAQAVMSGTMDIVIAAGVESMTRVPMGSPS 128
>gnl|CDD|182285 PRK10174, PRK10174, hypothetical protein; Provisional.
Length = 75
Score = 28.3 bits (63), Expect = 0.30
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 77 LAKQFIESGSDCTLALGFEKMEKGSL 102
LA++ E GSD L F K +K SL
Sbjct: 38 LAEKIWEEGSDEVLVKAFAKTDKDSL 63
>gnl|CDD|180434 PRK06158, PRK06158, thiolase; Provisional.
Length = 384
Score = 29.6 bits (67), Expect = 0.31
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNCSTG 71
EL +A +AL DAG+++ V D+ G +G+ P F V+ G
Sbjct: 30 ELLAQAAHRALADAGLTMADVDGLFTASPD-DALWGLSVAEYLGIR--PRF-VDGTMIGG 85
Query: 72 SS---ALMLAKQFIESGSDCTLAL 92
SS L+ A +E+G C +AL
Sbjct: 86 SSFLAHLLPAALALEAGL-CDVAL 108
>gnl|CDD|181147 PRK07855, PRK07855, lipid-transfer protein; Provisional.
Length = 386
Score = 28.8 bits (65), Expect = 0.51
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 13 LAKEALIKALDDAGISINQV 32
LA EA++ ALDDAG++ + V
Sbjct: 27 LACEAVLAALDDAGLAPSDV 46
>gnl|CDD|206163 pfam13993, YccJ, YccJ-like protein. The YccJ-like family of
proteins includes the E. coli YccJ protein, which is
functionally uncharacterized. This family of proteins is
found in bacteria. Proteins in this family are
approximately 80 amino acids in length.
Length = 69
Score = 27.1 bits (60), Expect = 0.65
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 77 LAKQFIESGSDCTLALGFEKMEKGSL 102
LA++ E GSD L L F K +K L
Sbjct: 32 LAEKIWEEGSDEVLPLAFAKTDKDQL 57
>gnl|CDD|183504 PRK12404, PRK12404, stage V sporulation protein AD; Provisional.
Length = 334
Score = 28.4 bits (64), Expect = 0.66
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 17/81 (20%)
Query: 13 LAKEALIKALDDAGISINQVQQACCGYVYGD-------STCGQRALYQIGMTGIPVFNVN 65
L +EA +A++ A + +Q ++ GD ++ R L GIP +
Sbjct: 57 LLEEACSRAIEKAKLRKEDIQF----FLAGDLMNQITPTSFAARTL------GIPYLGLF 106
Query: 66 NNCSTGSSALMLAKQFIESGS 86
CST L LA + SG
Sbjct: 107 GACSTSMEGLALAALIVNSGG 127
>gnl|CDD|216625 pfam01648, ACPS, 4'-phosphopantetheinyl transferase superfamily.
Members of this family transfers the
4'-phosphopantetheine (4'-PP) moiety from coenzyme A
(CoA) to the invariant serine of pfam00550. This
post-translational modification renders holo-ACP
capable of acyl group activation via thioesterification
of the cysteamine thiol of 4'-PP. This superfamily
consists of two subtypes: The ACPS type and the Sfp
type. The structure of the Sfp type is known, which
shows the active site accommodates a magnesium ion. The
most highly conserved regions of the alignment are
involved in binding the magnesium ion.
Length = 108
Score = 27.5 bits (61), Expect = 0.92
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 14 AKEALIKALDDAGISINQVQ 33
AKEA+ KAL G+ +++V+
Sbjct: 49 AKEAVFKALGRGGLPLSRVE 68
>gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid
metabolism / Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 412
Score = 28.0 bits (63), Expect = 0.94
Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 36/118 (30%)
Query: 13 LAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRAL--------------------- 51
LA A ++AL+DAG+ G G G +
Sbjct: 74 LAVVAAVEALEDAGLDNELNVDMRVGVAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLV 133
Query: 52 -------------YQIGMTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFE 95
G+ G P + C+TG+ A+ A + I G +D +A G E
Sbjct: 134 PKMLPNLAAGNVAIVFGLKG-PNYTPVTACATGAHAIGDAVRLIRLGKADVVIAGGAE 190
>gnl|CDD|181265 PRK08170, PRK08170, acetyl-CoA acetyltransferase; Provisional.
Length = 426
Score = 28.1 bits (63), Expect = 0.95
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 59 IPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKMEKGSL 102
+P + V NC++G AL A I G +D LA G E M L
Sbjct: 80 VPAWTVQRNCASGMQALDSAAANIALGRADLVLAGGVEAMSHAPL 124
>gnl|CDD|237814 PRK14777, PRK14777, lipoprotein signal peptidase; Provisional.
Length = 184
Score = 27.5 bits (61), Expect = 1.1
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 54 IGMTGIPVFNVNNNCSTGSSALMLAKQF 81
+G P+FN+ + C G + L+L F
Sbjct: 151 LGQGDFPIFNLADMCVVGGTLLLLFASF 178
>gnl|CDD|181732 PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 338
Score = 27.5 bits (62), Expect = 1.5
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 14/89 (15%)
Query: 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQR-----ALYQIGMTGIP 60
E T + A A KAL +AGI + + G + S C A G+P
Sbjct: 57 EGTQLSDGAIAAGRKALAEAGIDPSDI-----GLLINTSVCRDYLEPATACRVHHNLGLP 111
Query: 61 ----VFNVNNNCSTGSSALMLAKQFIESG 85
F+V+N C + ++ A IE G
Sbjct: 112 KSCANFDVSNACLGFLNGMLDAANMIELG 140
>gnl|CDD|236398 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 392
Score = 27.5 bits (62), Expect = 1.5
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 14 AKEALIKALDDAGISINQVQQACCGYV 40
A A+ +AL DAG++ + GY+
Sbjct: 262 AILAMQQALADAGLAPADI-----GYI 283
>gnl|CDD|226089 COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell
envelope biogenesis, outer membrane].
Length = 536
Score = 27.1 bits (60), Expect = 1.9
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 4 PKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGM-TGIPV 61
+T YP+ + A A I N +A G V + G +++G+ T I V
Sbjct: 40 ASVETVYPDRSARAAAAAA----IMKNPAMRALYGPVPNPGSLGAVGAWKMGLFTLIAV 94
>gnl|CDD|235872 PRK06840, PRK06840, hypothetical protein; Validated.
Length = 339
Score = 26.9 bits (60), Expect = 2.0
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 2 QKP-KEDTDYP-ELAKEALIKALDDAGIS---INQVQQACCGYVYGDSTCGQRALY---Q 53
+KP D+ ++A A AL AG+ I+ V G + D A +
Sbjct: 43 EKPVPGPEDHTSDMAIAAAKPALKQAGVDPAAIDVV--IYIGSEHKDYPVWSSAPKIQHE 100
Query: 54 IGMTGIPVFNVNNNCSTGSSALMLAK 79
IG F++ C++ AL +AK
Sbjct: 101 IGAKNAWAFDIMAVCASFPIALKVAK 126
>gnl|CDD|215161 PLN02287, PLN02287, 3-ketoacyl-CoA thiolase.
Length = 452
Score = 27.0 bits (60), Expect = 2.1
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDST-----CGQRALYQIGMTGIPV 61
DT +L L ++ G++ ++V G V + C A Y +PV
Sbjct: 68 DTYPDDLLAPVLKAVVEKTGLNPSEVGDIVVGTVLAPGSQRANECRMAAFYAGFPETVPV 127
Query: 62 FNVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
VN CS+G A+ I++G D + G E M
Sbjct: 128 RTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGVESM 164
>gnl|CDD|219413 pfam07451, SpoVAD, Stage V sporulation protein AD (SpoVAD). This
family contains the bacterial stage V sporulation
protein AD (SpoVAD), which is approximately 340 residues
long. This is one of six proteins encoded by the spoVA
operon, which is transcribed exclusively in the
forespore at about the time of dipicolinic acid (DPA)
synthesis in the mother cell. The functions of the
proteins encoded by the spoVA operon are unknown, but it
has been suggested they are involved in DPA transport
during sporulation.
Length = 329
Score = 26.7 bits (60), Expect = 2.2
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 19/81 (23%)
Query: 13 LAKEALIKALDDAGISINQVQQACCGYVY-GD-------STCGQRALYQIGMTGIPVFNV 64
+ +EA+ AL AG+ + + Y+ GD S+ R L GIP +
Sbjct: 54 MLEEAVKLALKKAGLKKDDID-----YLLAGDLLNQIISSSFAARTL------GIPFLGL 102
Query: 65 NNNCSTGSSALMLAKQFIESG 85
CST +L LA ++ G
Sbjct: 103 YGACSTMMESLALAAMLVDGG 123
>gnl|CDD|172540 PRK14048, PRK14048, ferrichrome/ferrioxamine B periplasmic
transporter; Provisional.
Length = 374
Score = 26.8 bits (59), Expect = 2.3
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 10 YPELAKEALIKALDDAGISINQV-----QQACCGYVYGDSTCGQRALYQIGMTGIPVFNV 64
+PELA LI G+S + A D+ GQRA+ + G+PV V
Sbjct: 95 FPELADVPLIDDGSGPGLSFETILTLKADLAILANWQADTEAGQRAIEYLESIGVPVIVV 154
Query: 65 NNN 67
+ N
Sbjct: 155 DFN 157
>gnl|CDD|235817 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 425
Score = 26.9 bits (60), Expect = 2.3
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
Query: 16 EALIKALDDAGISINQVQQACCGYV--YGDST 45
A+ AL DAG++ Q+ Y+ +G ST
Sbjct: 293 GAIRAALADAGLTPEQI-----DYINAHGTST 319
>gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional.
Length = 399
Score = 26.9 bits (60), Expect = 2.5
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 57 TGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
+ VN C++G A+ +A I G +D +A G E M
Sbjct: 84 NSVGGVTVNRFCASGLQAVAMAADRIRVGEADVMIAAGVESM 125
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 26.6 bits (59), Expect = 2.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 8 TDYPELAKEALIKALDDAGISINQV 32
T + + EAL+KA + AG+ + Q+
Sbjct: 146 TWFSDEQTEALVKAAEAAGLPVLQL 170
>gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed.
Length = 547
Score = 26.7 bits (60), Expect = 2.8
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 13/55 (23%)
Query: 57 TGIPVFNV---------NNNCSTGSSALMLAKQFIESG---SDCTLALGFEKMEK 99
TGIP F + S G++ L ++ +D + +G + +EK
Sbjct: 223 TGIPFFTTQMGKGVIPETHPLSLGTAGLS-QGDYVHCAIEHADLIINVGHDVIEK 276
>gnl|CDD|238427 cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific
polyketide synthases (PKS) and related enzymes, also
called type III PKSs. PKS generate an array of different
products, dependent on the nature of the starter
molecule. They share a common chemical strategy, after
the starter molecule is loaded onto the active site
cysteine, a carboxylative condensation reation extends
the polyketide chain. Plant-specific PKS are dimeric
iterative PKSs, using coenzyme A esters to deliver
substrate to the active site, but they differ in the
choice of starter molecule and the number of
condensation reactions.
Length = 361
Score = 26.4 bits (59), Expect = 3.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 11 PELAKEALIKALDDAGIS 28
ELA+EA ALD+AG+
Sbjct: 86 RELAEEAARGALDEAGLR 103
>gnl|CDD|199856 cd06230, M14_ASTE_ASPA_like, Peptidase M14 Succinylglutamate
desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily.
The Peptidase M14 Succinylglutamate desuccinylase
(ASTE)/aspartoacylase (ASPA) subfamily belongs to the
M14 family of metallocarboxypeptidases (MCPs), and
includes ASTE, which catalyzes the fifth and last step
in arginine catabolism by the arginine
succinyltransferase pathway, and aspartoacylase (ASPA,
also known as aminoacylase 2, and ACY-2; EC:3.5.1.15)
which cleaves N-acetyl L-aspartic acid (NAA) into
aspartate and acetate. NAA is abundant in the brain,
and hydrolysis of NAA by ASPA may help maintain white
matter. ASPA is an NAA scavenger in other tissues.
Mutations in the gene encoding ASPA cause Canavan
disease (CD), a fatal progressive neurodegenerative
disorder involving dysmyelination and spongiform
degeneration of white matter in children. This enzyme
binds zinc which is necessary for activity. Measurement
of elevated NAA levels in urine is used in the
diagnosis of CD.
Length = 254
Score = 26.2 bits (58), Expect = 3.7
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 35 ACCGYVYGDSTCGQRALYQI 54
G V+G+ CG +A+ ++
Sbjct: 2 LITGGVHGNEPCGVQAIERL 21
>gnl|CDD|227200 COG4863, COG4863, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 439
Score = 26.4 bits (58), Expect = 3.9
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 14/69 (20%)
Query: 1 FQKPKEDTDYPELAKEALIKA----LDDAGISINQVQQACCGYVYGDSTCGQRAL--YQI 54
+Q P E LI+ ++D G + Y + ST + +
Sbjct: 273 YQNPSLVETTSYRTGE-LIQKSFDFINDHGGWTDH-------YQFFFSTINDSQQLSFYL 324
Query: 55 GMTGIPVFN 63
M GIPV N
Sbjct: 325 FMDGIPVIN 333
>gnl|CDD|148019 pfam06162, DUF976, Caenorhabditis elegans protein of unknown
function (DUF976). This family consists of several
hypothetical Caenorhabditis elegans proteins of unknown
function.
Length = 166
Score = 26.0 bits (57), Expect = 4.1
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 59 IPVFNVNNNCSTGSSALMLAKQFIESGSDCTLALGFEKMEK 99
+ VF+ S A+++ ++ ++S S L F KME+
Sbjct: 28 VTVFDEPVEGKQPSPAVIVYEELVKSDSSKYL---FFKMEE 65
>gnl|CDD|184878 PRK14878, PRK14878, UGMP family protein; Provisional.
Length = 323
Score = 26.0 bits (58), Expect = 4.4
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 3 KPKEDTDY-PELAKEALIKALDDAGISINQV 32
P+E + E+A E L KAL+ AGISI +
Sbjct: 36 HPREAAQHHAEVAPELLRKALEKAGISIEDI 66
>gnl|CDD|181145 PRK07850, PRK07850, acetyl-CoA acetyltransferase; Provisional.
Length = 387
Score = 25.8 bits (57), Expect = 5.2
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 52 YQIGMTGIPVFNVNNNCSTGSS--ALMLAKQFIESGS-DCTLALGFEKMEKGSLGAKSKP 108
Y +G T I +C GS+ A L I +G+ D +A G E M + LGA + P
Sbjct: 78 YHVGATTI-------DCQCGSAQQANHLVAGLIAAGAIDVGIACGVEAMSRVPLGANAGP 130
>gnl|CDD|180843 PRK07108, PRK07108, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 25.9 bits (57), Expect = 5.5
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGM-TGIPV---- 61
T L + A++ A + +V+ G + G QI + G+PV
Sbjct: 24 MTHGATLGGHVVQHAVERAKLDPAEVEDVIMGCANPEGATGANIARQIALRAGLPVTVPG 83
Query: 62 FNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFE 95
VN CS+G + LA Q + +G D +A G E
Sbjct: 84 MTVNRFCSSGLQTIALAAQRVIAGEGDVFVAGGVE 118
>gnl|CDD|117687 pfam09131, Endotoxin_mid, Bacillus thuringiensis delta-Endotoxin,
middle domain. Members of this family adopt a structure
consisting of three four-stranded beta-sheets, each with
a Greek key fold, with internal pseudo threefold
symmetry. Thus they act as a receptor binding
beta-prism, binding to insect-specific receptors of gut
epithelial cells.
Length = 206
Score = 25.8 bits (56), Expect = 5.6
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 55 GMTGIPVFNVNNNCSTGSSALM--LAKQFIESGSD 87
G+ G N N NCST L + +++SG+D
Sbjct: 83 GLIGATNLNQNFNCSTVLPPLSTPFVRSWLDSGTD 117
>gnl|CDD|203647 pfam07488, Glyco_hydro_67M, Glycosyl hydrolase family 67 middle
domain. Alpha-glucuronidases, components of an
ensemble of enzymes central to the recycling of
photosynthetic biomass, remove the alpha-1,2 linked
4-O-methyl glucuronic acid from xylans. This family
represents the central catalytic domain of
alpha-glucuronidase.
Length = 328
Score = 25.6 bits (57), Expect = 6.3
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 49 RALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIE 83
R L IG+ G+ V NVN N AL+L ++++
Sbjct: 64 RLLASIGINGVVVNNVNAN------ALLLTPEYLD 92
>gnl|CDD|222411 pfam13840, ACT_7, Family description. The ACT domain is a
structural motif of 70-90 amino acids that functions in
the control of metabolism, solute transport and signal
transduction. They are thus found in a variety of
different proteins in a variety of different
arrangements. In mammalian phenylalanine hydroxylase
the domain forms no contacts but promotes an allosteric
effect despite the apparent lack of ligand binding.
Length = 65
Score = 24.4 bits (54), Expect = 6.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 17 ALIKALDDAGISINQV 32
+ L +AGISI Q+
Sbjct: 26 KITSPLAEAGISIFQI 41
>gnl|CDD|180379 PRK06065, PRK06065, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 25.6 bits (56), Expect = 7.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 12 ELAKEALIKALDDAGISINQV 32
ELA EA KALD+AG+ + +
Sbjct: 31 ELAWEAASKALDEAGLELKDI 51
>gnl|CDD|132329 TIGR03286, methan_mark_15, putative methanogenesis marker protein
15. Members of this protein family, to date, are found
in a completed prokaryotic genome if and only if the
species is one of the archaeal methanogens. The exact
function is unknown, but likely is linked to
methanogenesis or a process closely connected to it.
Related proteins include the BadF/BadG/BcrA/BcrD ATPase
family (pfam01869), which includes an activator for
(R)-2-hydroxyglutaryl-CoA dehydratase [Energy
metabolism, Methanogenesis].
Length = 404
Score = 25.6 bits (56), Expect = 7.8
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 8 TDYPELAKEALIKALDDAGISINQVQ 33
T E A+EA+ +AL++AG+S+ V+
Sbjct: 175 TKVIESAEEAVERALEEAGVSLEDVE 200
>gnl|CDD|133384 cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the
MerR-like transcription regulators YyaN and YraB.
Putative helix-turn-helix (HTH) MerR-like transcription
regulators of Bacillus subtilis, YyaN and YraB, and
related proteins; N-terminal domain. Based on sequence
similarity, these proteins are predicted to function as
transcription regulators that mediate responses to
stress in eubacteria. They belong to the MerR
superfamily of transcription regulators that promote
transcription of various stress regulons by
reconfiguring the operator sequence located between the
-35 and -10 promoter elements. A typical MerR regulator
is comprised of distinct domains that harbor the
regulatory (effector-binding) site and the active
(DNA-binding) site. Their N-terminal domains are
homologous and contain a DNA-binding winged HTH motif,
while the C-terminal domains are often dissimilar and
bind specific coactivator molecules such as metal ions,
drugs, and organic substrates.
Length = 113
Score = 24.7 bits (55), Expect = 8.3
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 8/36 (22%)
Query: 18 LIKALDDAGISINQVQQACCGYVY----GDSTCGQR 49
IK L + G+SI +++ Y GDST +R
Sbjct: 49 FIKCLRNTGMSIKDIKE----YAELRREGDSTIPER 80
>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase,
PIG3 family. Members of this family are putative
quinone oxidoreductases that belong to the broader
superfamily (modeled by Pfam pfam00107) of
zinc-dependent alcohol (of medium chain length)
dehydrogenases and quinone oxiooreductases. The
alignment shows no motif of conserved Cys residues as
are found in zinc-binding members of the superfamily,
and members are likely to be quinone oxidoreductases
instead. A member of this family in Homo sapiens, PIG3,
is induced by p53 but is otherwise uncharacterized
[Unknown function, Enzymes of unknown specificity].
Length = 325
Score = 25.3 bits (56), Expect = 8.6
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 20/56 (35%)
Query: 47 GQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQF-----IESGSD----CTLALG 93
G+ L G +GI G++A+ LAK F +GSD ALG
Sbjct: 140 GETVLIHGGASGI-----------GTTAIQLAKAFGARVFTTAGSDEKCAACEALG 184
>gnl|CDD|181691 PRK09196, PRK09196, fructose-1,6-bisphosphate aldolase; Reviewed.
Length = 347
Score = 25.3 bits (56), Expect = 9.0
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 58 GIPVFNVNN 66
G+P FNVNN
Sbjct: 19 GVPAFNVNN 27
>gnl|CDD|180563 PRK06445, PRK06445, acetyl-CoA acetyltransferase; Provisional.
Length = 394
Score = 25.1 bits (55), Expect = 9.1
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 59 IPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKMEKGSLG 103
IP V+ C++ + + + I +G +D +A G E M + +G
Sbjct: 86 IPAMAVDRQCASSLTTVSIGAMEIATGMADIVIAGGVEHMTRTPMG 131
>gnl|CDD|236396 PRK09181, PRK09181, aspartate kinase; Validated.
Length = 475
Score = 25.3 bits (56), Expect = 9.4
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 13 LAKEALIKALDDAGISINQVQQ 34
LAK +AL +AGI++ + Q
Sbjct: 418 LAKAV--QALAEAGINVLALHQ 437
>gnl|CDD|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb
receptors, which are metabotropic transmembrane
receptors for gamma-aminobutyric acid (GABA).
Ligand-binding domain of GABAb receptors, which are
metabotropic transmembrane receptors for
gamma-aminobutyric acid (GABA). GABA is the major
inhibitory neurotransmitter in the mammalian CNS and,
like glutamate and other transmitters, acts via both
ligand gated ion channels (GABAa receptors) and
G-protein coupled receptors (GABAb). GABAa receptors are
members of the ionotropic receptor superfamily which
includes alpha-adrenergic and glycine receptors. The
GABAb receptor is a member of a receptor superfamily
which includes the mGlu receptors. The GABAb receptor is
coupled to G alpha_i proteins, and activation causes a
decrease in calcium, an increase in potassium membrane
conductance, and inhibition of cAMP formation. The
response is thus inhibitory and leads to
hyperpolarization and decreased neurotransmitter
release, for example.
Length = 350
Score = 24.9 bits (55), Expect = 9.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 6 EDTDYPELAKEALIKALDDAGISI 29
ED DY L+ AL +AGI I
Sbjct: 143 EDDDYGSGGLPDLVDALQEAGIEI 166
>gnl|CDD|236164 PRK08142, PRK08142, acetyl-CoA acetyltransferase; Provisional.
Length = 388
Score = 25.0 bits (55), Expect = 9.9
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNN 66
D +L E AL DAG+S+ V GY G + G+ + +V++
Sbjct: 22 DKSVAQLHAEVAKGALADAGLSLADVD----GYFCAGDAPGLGPASMVDYLGLKLRHVDS 77
Query: 67 NCSTGSSALML---AKQFIESGSDCTLAL 92
+ GSS L A Q I +G C++AL
Sbjct: 78 TETGGSSYLAHVGHAAQAIAAGK-CSVAL 105
>gnl|CDD|236230 PRK08304, PRK08304, stage V sporulation protein AD; Validated.
Length = 337
Score = 25.2 bits (56), Expect = 10.0
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 20/89 (22%)
Query: 12 ELAKEALIKALDDAGISINQVQQACCGYVY-GD-------STCGQRALYQIGMTGIPVFN 63
++ ++A+ +AL A + + + Y+ GD + R L GIP
Sbjct: 58 KMMEDAIQQALQKANLKKSDI-----DYLLAGDLLNQIISANFAAREL------GIPFLG 106
Query: 64 VNNNCSTGSSALMLAKQFIESG-SDCTLA 91
+ CST +L L I+ G +D LA
Sbjct: 107 LYGACSTMMESLALGSMLIDGGFADRVLA 135
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.385
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,361,761
Number of extensions: 428742
Number of successful extensions: 706
Number of sequences better than 10.0: 1
Number of HSP's gapped: 669
Number of HSP's successfully gapped: 89
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)