RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13271
(110 letters)
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl
transfer, transferase; 2.00A {Streptomyces tendae} PDB:
3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Length = 357
Score = 48.8 bits (117), Expect = 3e-08
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 10/89 (11%)
Query: 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG-------QRALYQIGMTG 58
E+ P +A A AL + V ++
Sbjct: 50 EEDAPPRMAARAARAALGRGDVDPADVSLVLHSSLWFQGIDLWPAASYVAHEA---VGRH 106
Query: 59 IPVFNVNNNCSTGSSALMLAKQFIESGSD 87
+P F + C+ G A+ LA ++ SG
Sbjct: 107 VPAFGLAQRCNGGMGAIELAGAYLGSGIG 135
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics,
PSI-2, protein structure initiative; 1.99A {Bacillus
licheniformis} PDB: 3lm6_A
Length = 347
Score = 47.4 bits (113), Expect = 1e-07
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQ--RALYQIGMTGIPVFNVNNNCS 69
+L ++A+ AL + + Q A Y IP + CS
Sbjct: 57 KLMEDAVQSALSKQNLKKEDID-----IFLAGDLLNQNVTANYVARHLKIPFLCLFGACS 111
Query: 70 TGSSALMLAKQFIESG 85
T ++ ++ I+ G
Sbjct: 112 TSMESIAISSALIDGG 127
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide,
biosynthetic engineering, catalytic triad, transferase;
HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2
c.95.1.2
Length = 339
Score = 43.3 bits (103), Expect = 2e-06
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 4 PKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG------QRALYQIGMT 57
P E + A +AL+ AG+ ++ + L G
Sbjct: 56 PDETIQ--VMGVAASRRALEHAGVDPAEIDLVVVSTMTNFVHTPPLSVAIAHEL---GAD 110
Query: 58 GIPVFNVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
F+++ C+ AL +A +ESG L + E+M
Sbjct: 111 NAGGFDLSAACAGFCHALSIAADAVESGGSRHVLVVATERM 151
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 43.3 bits (103), Expect = 3e-06
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 13 LAKEALIKALDDAGISINQVQQACCGYVYGDSTCG------QRALYQIGMTGIPVFNVNN 66
L A +A++ AG+ + + D Q L G+ IPV ++
Sbjct: 77 LMVPAARQAIEAAGLLPEDIDLLLVNTLSPDHHDPSQACLIQPLL---GLRHIPVLDIRA 133
Query: 67 NCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
S L +A+ I +G L + E +
Sbjct: 134 QASGLLYGLQMARGQILAGLARHVLVVCGEVL 165
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 43.2 bits (103), Expect = 3e-06
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGM-TGIPV----FNVN 65
ELA L +A+ G+ ++V + G+ T + G P + +
Sbjct: 30 VELAVPVLQEAVKRGGVEPHEVDEVILGHCIQ-RTDEANTARTAALAAGFPDTVTGYTIQ 88
Query: 66 NNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
CS+G A+M A I+ G S+ +A G E M
Sbjct: 89 RQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAM 121
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 42.8 bits (102), Expect = 4e-06
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG------QRALYQIGMTGIPVFNVN 65
+ EA +A++ AGI +Q+ Q L G+ G P F+V
Sbjct: 53 TMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSML---GIKGCPAFDVA 109
Query: 66 NNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
C+ + AL +A Q+++SG+ L +G + +
Sbjct: 110 AACAGFTYALSVADQYVKSGAVKYALVVGSDVL 142
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 42.1 bits (100), Expect = 6e-06
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT-GIPV----FNVN 65
EL A +A+ A I+ + + ++ G V + GQ QI + GIPV +N
Sbjct: 32 VELGVTAAKEAIKRANITPDMIDESLLGGVLT-AGLGQNIARQIALGAGIPVEKPAMTIN 90
Query: 66 NNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
C +G ++ +A Q I G +D L G E M
Sbjct: 91 IVCGSGLRSVSMASQLIALGDADIMLVGGAENM 123
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
{Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Length = 335
Score = 42.1 bits (100), Expect = 7e-06
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 4 PKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG------QRALYQIGMT 57
E +A EA +AL +AG+S + +L G
Sbjct: 57 DDESAA--SMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASL---GAK 111
Query: 58 GIPVFNVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
GI F+++ + AL A I G L +G EK+
Sbjct: 112 GILGFDLSAGAAGFGYALGAAADMIRGGGAATMLVVGTEKL 152
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 42.1 bits (100), Expect = 8e-06
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT-GIPV----FNVN 65
+L A+ +A+ G++++++ + G V + GQ QI + GIP + VN
Sbjct: 30 VQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQ-TGLGQNVARQIAINAGIPNSVPSYTVN 88
Query: 66 NNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
C +G ++ LA Q I SG +D +A G E M
Sbjct: 89 KLCGSGLKSVQLAAQSITSGENDVVIAGGTENM 121
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 41.3 bits (98), Expect = 1e-05
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 4 PKEDTDYPELAKEALIKALDDAGISINQVQQACCG-----YVYGDSTCG-QRALYQIGMT 57
E + EA A++ A I+ ++ + Y + C Q L +
Sbjct: 54 EDETVAT--MGFEAAKNAIEAAQINPQDIELIIVATTSHSHAYPSAACQVQGLL---NID 108
Query: 58 GIPVFNVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
F++ C+ AL +A QFI +G L +G +
Sbjct: 109 DAISFDLAAACTGFVYALSVADQFIRAGKVKKALVIGSDLN 149
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 41.3 bits (98), Expect = 2e-05
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT-GIPV----FNVN 65
EL + L+ AG++ +V + G V + GQ Q M G+P + +N
Sbjct: 28 HELGATVISAVLERAGVAAGEVNEVILGQVLP-AGEGQNPARQAAMKAGVPQEATAWGMN 86
Query: 66 NNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
C +G A+ L Q I +G + +A G E M
Sbjct: 87 QLCGSGLRAVALGMQQIATGDASIIVAGGMESM 119
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 40.9 bits (97), Expect = 2e-05
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 15 KEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT-GIPV----FNVNNNCS 69
E + + + +N +++ CG V G + GIP +N CS
Sbjct: 44 NEFIGRFPEPLRADLNLIEEVACGNVLNVG-AGATEHRAACLASGIPYSTPFVALNRQCS 102
Query: 70 TGSSALMLAKQFIESG-SDCTLALGFEKM 97
+G +A+ I+ G D LALG E M
Sbjct: 103 SGLTAVNDIANKIKVGQIDIGLALGVESM 131
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 40.9 bits (97), Expect = 2e-05
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 12 ELAKEALIKALDDAGISINQVQQACCGYVYGD----ST-CG-QRALYQIGMTGIPVFNVN 65
+A +A +AL +A +S ++ + ST C Q L G+ F+++
Sbjct: 52 YMATQAAKEALREANLSPEELDLIILATLTPQKRFPSTACLVQAQL---KAKGVYAFDIS 108
Query: 66 NNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
CS AL +A FI+SG L +G EK+
Sbjct: 109 AACSGFIYALDIADSFIKSGKAKNVLVIGAEKL 141
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 41.0 bits (97), Expect = 2e-05
Identities = 27/97 (27%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT-GIPV---- 61
DT EL + L D + Q+ C G V G IP
Sbjct: 52 DTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPG-AGAIMARIAQFLSDIPETVPL 110
Query: 62 FNVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
VN CS+G A+ I +GS D +A G E M
Sbjct: 111 STVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESM 147
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 40.1 bits (95), Expect = 3e-05
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 4 PKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALY---QIGMTGIP 60
+DT LA EA +KA+ DAGI + GD A ++G +
Sbjct: 47 DDQDTSD--LAYEASVKAIADAGIQPEDIDMIIVATATGDMPFPTVANMLQERLGTGKVA 104
Query: 61 VFNVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
+ CS +++ AKQ+++SG L +G +K+
Sbjct: 105 SMDQLAACSGFMYSMITAKQYVQSGDYHNILVVGADKL 142
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 39.5 bits (93), Expect = 5e-05
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT-GIPV---- 61
DT +L L ++ ++ ++V G V + G P
Sbjct: 52 DTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAV 111
Query: 62 FNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
VN CS+G A+ I++G D + G E M
Sbjct: 112 RTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM 148
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 38.6 bits (91), Expect = 1e-04
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT-GIPV----FNVN 65
+L + + L A ++ V + G+V + CGQ + Q + GIP ++
Sbjct: 31 QDLGSTVIKEVLKRATVAPEDVSEVIFGHVLA-AGCGQNPVRQASVGAGIPYSVPAWSCQ 89
Query: 66 NNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
C +G A+ LA Q I G S +A G E M
Sbjct: 90 MICGSGLKAVCLAVQSIGIGDSSIVVAGGMENM 122
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A
{Curcuma longa} PDB: 3ov3_A
Length = 393
Score = 38.3 bits (89), Expect = 2e-04
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQ--IGM--TGIPVFNVNN 66
P LAKEA KA+ + G +++ + G G +G+ T + +
Sbjct: 103 PRLAKEAAEKAIKEWGRPKSEITHLVFCSISGIDMPGADYRLATLLGLPLTVNRLMIYSQ 162
Query: 67 NCSTGSSALMLAKQFIESGSD 87
C G++ L +AK E+
Sbjct: 163 ACHMGAAMLRIAKDLAENNRG 183
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 38.0 bits (89), Expect = 2e-04
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 11/100 (11%)
Query: 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG------QRALYQIGMTG- 58
+D + A +A KAL DA I I ++ V D L G++
Sbjct: 64 QDVQASDAATQAARKALIDANIGIEKIGLLINTSVSRDYLEPSTASIVSGNL---GVSDH 120
Query: 59 IPVFNVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
F+V N C + + +A + +E G D L + E
Sbjct: 121 CMTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETA 160
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis}
PDB: 3il5_A* 3il4_A*
Length = 321
Score = 37.1 bits (87), Expect = 3e-04
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 13 LAKEALIKALDDAGISINQVQQACCGYVYGD----ST-CG-QRALYQIGMTGIPVFNVNN 66
L + + L+ +G +++ V D S C Q A+ G T F+++
Sbjct: 55 LCHQVAKQLLEKSGKQASEIDFILVATVTPDFNMPSVACQVQGAI---GATEAFAFDISA 111
Query: 67 NCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
CS AL +A++ + SG L +G E
Sbjct: 112 ACSGFVYALSMAEKLVLSGRYQTGLVIGGETF 143
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS,
bacterial, thiolase fold, beta-alpha-beta-alpha fold,
catalytic triad; HET: 15P; 2.22A {Streptomyces
coelicolor} SCOP: c.95.1.2 c.95.1.2
Length = 382
Score = 36.2 bits (84), Expect = 7e-04
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 14/86 (16%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG-----QRALYQIGMTG----IPV 61
+ +ALDDA + + G + G IP+
Sbjct: 85 KSRVPAVIQRALDDAELLATDIDVIIYVSCTGFMMPSLTAWLINEM---GFDSTTRQIPI 141
Query: 62 FNVNNNCSTGSSALMLAKQFIESGSD 87
+ C+ G +A+ A F + +
Sbjct: 142 AQL--GCAAGGAAINRAHDFCTAYPE 165
>3v7i_A Putative polyketide synthase; type III polyketide synthase,
acyltransferase, transferase,; 2.90A {Streptomyces
coelicolor}
Length = 413
Score = 36.5 bits (84), Expect = 8e-04
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG--QRALYQIGMTG----IPVFNV 64
+ A AL AG+ + V + G ++ + G +P
Sbjct: 138 QAYGERAARGALQIAGLDVADVDCLITSNSTTPALPGLDVALANRLPLRGDTMLLPATQW 197
Query: 65 NNNCSTGSSALMLAKQFIESGSD 87
C G+ +L LA + + D
Sbjct: 198 --ACVAGTRSLALAADLVAADPD 218
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 36.3 bits (85), Expect = 8e-04
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT-GIPV----FNVN 65
+L A+ A++ AGI +V++A G V GQ Q + G+P+ +N
Sbjct: 33 TKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQ-GGEGQAPTRQAVLGAGLPISTPCTTIN 91
Query: 66 NNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
C++G A+M+A Q + G D +A G E M
Sbjct: 92 KVCASGMKAIMMASQSLMCGHQDVMVAGGMESM 124
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 35.9 bits (84), Expect = 0.001
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMT-GIPV----FNVN 65
+L AL +D +G+ +V+ G + + G PV VN
Sbjct: 27 DDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGFPVEVAGCTVN 86
Query: 66 NNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
C +G A+ A + I +G + G E M
Sbjct: 87 RLCGSGLEAVAQAARAIWAGEGKVYIGSGVESM 119
>1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase;
HET: CAA; 2.05A {Gerbera hybrid cultivar} SCOP: c.95.1.2
c.95.1.2 PDB: 1qlv_A
Length = 402
Score = 35.6 bits (82), Expect = 0.001
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG--QRALYQIGMTG----IPVFNV 64
P L KEA +KA+D+ G+ +++ G G + + +G++ ++
Sbjct: 108 PMLGKEAAVKAIDEWGLPKSKITHLIFCTTAGVDMPGADYQLVKLLGLSPSVKRYMLYQQ 167
Query: 65 NNNCSTGSSALMLAKQFIESG 85
+ G + L LAK E+
Sbjct: 168 --GAAAGGTVLRLAKDLAENN 186
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 35.6 bits (83), Expect = 0.001
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 11/94 (11%)
Query: 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG------QRALYQIGMTGI-PVFNV 64
+LA A +A++ A I + D Q L G+ F+V
Sbjct: 67 DLAFIASQRAIEAADIDPQSIDLIIVATSTPDFVFPSTACLLQNKL---GIRNHGAAFDV 123
Query: 65 NNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
CS + A+ A FI SG L +G E
Sbjct: 124 QAVCSGFAYAVATADSFIRSGQHRTALVIGAETF 157
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET:
MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2
PDB: 1tee_A
Length = 393
Score = 35.4 bits (82), Expect = 0.002
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQ--IGMTGIPVFNVNNN- 67
LA + +AL ++ G G +G++ V N
Sbjct: 114 VPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFM 173
Query: 68 -CSTGSSALMLAKQFIESGSDCT-LALGFE 95
C+ +AL A ++ + L + E
Sbjct: 174 GCAAAMNALGTATNYVRAHPAMKALVVCIE 203
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Length = 413
Score = 35.0 bits (80), Expect = 0.002
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIP-----VFNVN 65
P LAKEA KA+ + G S + + G + G+ V
Sbjct: 126 PRLAKEAAEKAIQEWGQSKSGITHLIFCSTTTPDLPGA-DFEVAKLLGLHPSVKRVGVFQ 184
Query: 66 NNCSTGSSALMLAKQFIESGSD 87
+ C G + L +AK E+
Sbjct: 185 HGCFAGGTVLRMAKDLAENNRG 206
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 34.4 bits (80), Expect = 0.003
Identities = 17/106 (16%), Positives = 30/106 (28%), Gaps = 38/106 (35%)
Query: 12 ELAKEALIKALDDAGIS----I---------------NQVQQACCGYVYGDSTCGQRALY 52
+LA A AL AG+ + +V
Sbjct: 55 DLALRAASAALASAGLERVDAVVLATSTGDFCCPATAPRVAAR----------------- 97
Query: 53 QIGMTGIPVFNVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
+G+ G F+++ + L I +G D L +G +
Sbjct: 98 -LGLVGALAFDLSAAATGFVYGLASVGSLISAGLADSALLVGVDTF 142
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics,
PSI-2, protein structure initiative; HET: MSE; 1.45A
{Rhodopseudomonas palustris}
Length = 392
Score = 34.2 bits (79), Expect = 0.004
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 12 ELAKEALIKALDDAGISINQVQQACCGYVYGD----ST-CG-QRALYQIGMTGIPVFNVN 65
E+A A +A++ G ++ C + Q AL G+ G F++N
Sbjct: 119 EMAVTAAEQAIERWGKPRERIGAVLCACSNMQRAYPAMAIEVQNAL---GLGGF-AFDMN 174
Query: 66 NNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
CS+ + L A F+ GS D L + E
Sbjct: 175 VACSSATFGLKTAADFVGGGSVDAVLMVNPEIC 207
>2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type
transferase; 1.90A {Marchantia polymorpha}
Length = 413
Score = 34.2 bits (78), Expect = 0.004
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQ--IGMTG----IPVFNV 64
P+LAKEA + A+ + G +++ G + G +G+ + ++
Sbjct: 121 PKLAKEASMNAIKEWGRPKSEITHIVMATTSGVNMPGAELATAKLLGLRPNVRRVMMYQQ 180
Query: 65 NNNCSTGSSALMLAKQFIESGSD 87
G++ L +AK E+ +
Sbjct: 181 --GAFAGATVLRVAKDLAENNAG 201
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 34.1 bits (79), Expect = 0.005
Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG------QRALYQIGM-TGIPVFNV 64
+LA EA K + +QV D Q L G+ T +V
Sbjct: 82 DLAYEAARKLFAQGAVGADQVDFVILCTQAPDYVLPTSACMLQHRL---GIPTHAGALDV 138
Query: 65 NNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
N CS L LAK +E+G+ C L L +
Sbjct: 139 NLGCSGYVYGLSLAKGLVETGAARCVLLLTADTY 172
>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase,
transferase; 1.75A {Neurospora crassa} PDB: 3eut_A*
3euq_A*
Length = 379
Score = 33.4 bits (76), Expect = 0.008
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG--QRALYQIGMTG----IPVFNV 64
LA EA KA+ +A + Q+ + G ++G++ + + +
Sbjct: 82 VPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKELGLSDRLEKVLLHGI 141
Query: 65 NNNCSTGSSALMLAKQFIESGSDC 88
S G +AL A +
Sbjct: 142 --GASGGLAALRTAANLCLGHTAR 163
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 32.9 bits (76), Expect = 0.011
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 11/94 (11%)
Query: 12 ELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG------QRALYQIGM-TGIPVFNV 64
+L ++A K L G + + + Q L + ++
Sbjct: 68 DLCRKAGEKLLAGLGWQADSIDALIFVSQTPNYRLPATAFVLQAEL---DLPASCLALDI 124
Query: 65 NNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
N CS AL L I++G+ L + +
Sbjct: 125 NLGCSGYPQALWLGMNLIQTGAAKRVLLAVGDTI 158
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid
synthase, type III PKS, acyltransferase, transferase;
2.58A {Neurospora crassa}
Length = 465
Score = 33.2 bits (75), Expect = 0.011
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG--QRALYQIGMTG----IPVFNV 64
LA EA KA+ +A + Q+ + G ++G++ + + +
Sbjct: 111 VPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKELGLSDRLEKVLLHGI 170
Query: 65 NNNCSTGSSALMLAKQFIESGSDC 88
CS G +AL A +
Sbjct: 171 --GCSGGLAALRTAANLCLGHTAR 192
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide
synthase, transferase; HET: COA; 1.60A {Aloe
arborescens} PDB: 2d51_A 2d52_A*
Length = 406
Score = 33.1 bits (75), Expect = 0.012
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG--QRALYQIGMTG----IPVFNV 64
P L EA +KA+++ G +++ G + +G+ ++
Sbjct: 116 PALGTEAAVKAIEEWGRPKSEITHLVFCTSCGVDMPSADFQCAKLLGLHANVNKYCIYMQ 175
Query: 65 NNNCSTGSSALMLAKQFIESGSD 87
G + + AK E+
Sbjct: 176 --GAYAGGTVMRYAKDLAENNRG 196
>3awk_A Chalcone synthase-like polyketide synthase; type III polyketide
synthase, transferase; 2.00A {Huperzia serrata} PDB:
3awj_A
Length = 402
Score = 32.6 bits (74), Expect = 0.015
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG--QRALYQIGMTG----IPVFNV 64
P+LAKEA I A+ G +++ G G + +G+ + ++
Sbjct: 116 PKLAKEAAISAIKQWGQPKSKITHLVFATTSGVDMPGADFQLAKLLGLRPTVKRVMLYQQ 175
Query: 65 NNNCSTGSSALMLAKQFIESGSD 87
G++ L +AK E+
Sbjct: 176 --GAYAGATVLRVAKDLAENNKG 196
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
thermophilus} SCOP: c.95.1.2 c.95.1.2
Length = 322
Score = 32.4 bits (75), Expect = 0.018
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 7/99 (7%)
Query: 3 KPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALY---QIGMTGI 59
E T LA +A+ L ++ V D+ A + G+
Sbjct: 45 AEDEYTSD--LAFKAVEDLLRRHPGALEGVDAVIVATNTPDALFPDTAALVQARFGLKA- 101
Query: 60 PVFNVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
+++ C AL A +E+G LA+G E +
Sbjct: 102 FAYDLLAGCPGWIYALAQAHALVEAGLAQKVLAVGAEAL 140
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 32.2 bits (73), Expect = 0.023
Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 40/122 (32%)
Query: 21 ALDDAGISI-----NQVQQACCGYVYGDSTCGQ----RALYQIGMTGIPVFN------VN 65
A +GI+ V + G S G R +++ PV N
Sbjct: 1023 AFIASGITDPYEMYKYVHVSEVG-NCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFI 1081
Query: 66 NN----------------------CSTGSSALMLAKQFIESG-SDCTLALGFEKM-EKGS 101
N C+T ++ + + I SG + + G++ E+GS
Sbjct: 1082 NTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEEGS 1141
Query: 102 LG 103
Sbjct: 1142 FE 1143
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A
{Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A
1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A*
1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A*
1z1e_A* 1z1f_A*
Length = 389
Score = 31.8 bits (72), Expect = 0.025
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCG--QRALYQIGMTG----IPVFNV 64
P L KEA +KA+ + G +++ G G + +G+ ++
Sbjct: 103 PRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQ 162
Query: 65 NNNCSTGSSALMLAKQFIESG 85
G + L LAK E+
Sbjct: 163 --GAFAGGTVLRLAKDLAENN 181
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase;
2.00A {Oryza sativa} PDB: 3ale_A
Length = 387
Score = 30.9 bits (70), Expect = 0.052
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 11 PELAKEALIKALDDAGISINQVQQ--ACCGYVYGDSTCGQRALYQIGMTG-IPVFNVNNN 67
PELA EA KA+ + G + R + +G+ + ++ N
Sbjct: 97 PELAAEAAKKAIAEWGRPAADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLN 156
Query: 68 -CSTGSSALMLAKQFIESGSD 87
C G +AL LAK E+
Sbjct: 157 GCFAGCAALRLAKDLAENSRG 177
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS,
coenzyme A, thiolase fold, condensing enzyme; HET: HMG
CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2
c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*
Length = 396
Score = 29.8 bits (67), Expect = 0.14
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 59 IPVFNVNNNCSTGSSALMLAKQFIESGSD 87
F + C + A+ LAK ++ + +
Sbjct: 102 ARCFEMKEACYAATPAIQLAKDYLATRPN 130
>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide
synthase, transferase, acyltransferase; HET: HC4; 1.60A
{Rheum palmatum} PDB: 3a5q_A* 3a5s_A
Length = 387
Score = 29.5 bits (66), Expect = 0.18
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 11 PELAKEALIKALDDAGIS---INQVQQACCGYVY---GDSTCGQRALYQIGMTGIPVFNV 64
EL KEA +KA+ + G I + C V D + + +++
Sbjct: 99 AELGKEAALKAIKEWGQPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHL 158
Query: 65 NNNCSTGSSALMLAKQFIESGSDCTLAL 92
C G + L LAK E+ + +
Sbjct: 159 --GCYAGGTVLRLAKDIAENNKGARVLI 184
>2fgt_A Two-component system YYCF/YYCG regulatory protein YYCH; signal
transduction, calcium binding, beta sheet, signaling
protein; 2.30A {Bacillus subtilis}
Length = 417
Score = 28.9 bits (64), Expect = 0.26
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 1 FQKPKEDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIP 60
FQ+ E + K+ + Y + + Q+ + I M IP
Sbjct: 243 FQQRNLVQSTSYQTGELIKKSQKY----LEDTGSWTDHYQFFNINDSQQLSFYIFMDQIP 298
Query: 61 VFNVNNNCSTGSSAL 75
V N +SA+
Sbjct: 299 VINSTAKPFGATSAI 313
>2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS,
chalcone-S synthase superfamily, type I PKS; HET: P6G;
2.90A {Dictyostelium discoideum}
Length = 374
Score = 28.6 bits (64), Expect = 0.42
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 28/90 (31%)
Query: 11 PELAKEALIKALDDAGIS---INQVQQACCGYV------------YG-DSTCGQRALYQI 54
P+LA++A ++AL D G I + + G + + +L +
Sbjct: 96 PDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLM 155
Query: 55 GMTGIPVFNVNNNCSTGSSALMLAKQFIES 84
G C G S+L A ++
Sbjct: 156 G------------CLAGLSSLRTAASLAKA 173
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.66
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 18/65 (27%)
Query: 45 TCGQRALYQI-----GMTGIPVFNVNNNCSTGSSALMLAKQFIESGS----DC-TLALGF 94
+ Q AL + TG V VN N Q++ +G D T L F
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVE-NQ-------QYVAAGDLRALDTVTNVLNF 1871
Query: 95 EKMEK 99
K++K
Sbjct: 1872 IKLQK 1876
Score = 25.4 bits (55), Expect = 5.9
Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 27/65 (41%)
Query: 8 TDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNN 67
+ A + + K L +S N + IPV++
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKD-----------------I------QIPVYDTF-- 463
Query: 68 CSTGS 72
GS
Sbjct: 464 --DGS 466
>2wb0_X E2A DNA-binding protein; ssDNA binding protein; 1.95A {Human
adenovirus 5} PDB: 1adv_A 1adu_A 1anv_A 1adt_A 2waz_X
Length = 356
Score = 26.9 bits (59), Expect = 1.4
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 24 DAGISINQVQQACCGYVYGDSTCGQRALYQI 54
DA NQ CG + + Q A QI
Sbjct: 169 DAACPANQFSGKSCGMFFSEGAKAQVAFKQI 199
>1l8n_A Alpha-D-glucuronidase; hydrolase; HET: GCW XYP; 1.50A {Geobacillus
stearothermophilus} SCOP: c.1.8.10 d.92.2.2 PDB: 1k9d_A*
1mqq_A* 1mqp_A 1mqr_A* 1k9f_A* 1k9e_A*
Length = 679
Score = 26.7 bits (59), Expect = 1.6
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 49 RALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIE 83
R L +G+ I + NVN + + ++ F+
Sbjct: 185 RLLASVGINAISINNVNVH---KTETKLITDHFLP 216
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 26.5 bits (59), Expect = 1.7
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 7 DTDYPELAKEALIKALDDAGISINQ 31
D P+ A EA A+ +NQ
Sbjct: 39 DFPPPDFAVEAFQHAVSG-DFMLNQ 62
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.90A {Silicibacter pomeroyi
dss-3}
Length = 391
Score = 26.3 bits (59), Expect = 2.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 7 DTDYPELAKEALIKALDD 24
T P A EAL K+L+
Sbjct: 42 GTGAPRGAVEALAKSLET 59
>2kpq_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; NMR {Agrobacterium tumefaciens str}
Length = 100
Score = 24.9 bits (54), Expect = 3.7
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 11 PELAKEALIKALDDAGISINQVQQA 35
E+A+ A + A A + +A
Sbjct: 68 GEIARTAFVAASRQAHCLMEDKAEA 92
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport
protein; 1.75A {Escherichia coli}
Length = 308
Score = 25.5 bits (56), Expect = 3.9
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 18 LIKALDDAGISINQVQ 33
L++AL AG+ +Q
Sbjct: 120 LLRALRQAGLKFTDIQ 135
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 25.1 bits (55), Expect = 4.8
Identities = 3/14 (21%), Positives = 7/14 (50%)
Query: 68 CSTGSSALMLAKQF 81
TG + L +++
Sbjct: 53 AGTGLLSAFLMEKY 66
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein,
periplasmic-binding P transport protein; HET: MPO; 1.70A
{Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Length = 324
Score = 25.1 bits (55), Expect = 5.0
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 18 LIKALDDAGISINQVQ 33
L++ L +G+S+ +
Sbjct: 146 LLRVLAKSGLSMRDIT 161
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 1.89A {Parabacteroides distasonis}
Length = 238
Score = 25.3 bits (56), Expect = 5.1
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 8 TDYPELAKEAL 18
TD PE ++ L
Sbjct: 223 TDLPEETQKIL 233
>2was_A 3-oxoacyl-[acyl-carrier-protein] synthase; COA, FAS, PPT, NAD,
NADP, transferase, phosphoprotein, oxidoreductase,
lipid synthesis; 1.90A {Saccharomyces cerevisiae} PDB:
2wat_A* 2was_B
Length = 122
Score = 24.8 bits (55), Expect = 5.3
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 14 AKEALIKALDDAGIS 28
AKEA+ K+L +
Sbjct: 50 AKEAVFKSLGVKSLG 64
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 25.1 bits (56), Expect = 5.8
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 55 GMTGIPVFNVNNNCSTGSSALMLAKQFIESGSDCTLALGFE 95
GM G P + + G AL A++ I G+ ++ G +
Sbjct: 157 GMRG-PSSALVAEQAGGLDALGHARRTIRRGTPLVVSGGVD 196
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics,
joint center for structural genomics, JCSG; HET: MSE;
1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Length = 250
Score = 24.9 bits (55), Expect = 5.8
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 8 TDYPELAKEALIKALDDAGI 27
TD P LA + +A +
Sbjct: 231 TDRPTLAIALRTEHRMEASV 250
>2wds_A Holo-[acyl-carrier-protein] synthase; phosphopantetheine ARM,
fatty acid biosynthesis, lipid synthesis, transferase,
polyketides; HET: COA; 1.35A {Streptomyces coelicolor}
PDB: 2wdo_A* 2jca_A 2jbz_A* 2wdy_A*
Length = 143
Score = 24.5 bits (54), Expect = 6.7
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 14 AKEALIKAL 22
AKEAL KAL
Sbjct: 75 AKEALAKAL 83
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET:
LLP; 2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 25.0 bits (55), Expect = 7.2
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 7 DTDYPELAKEALIKALDDAGISINQ 31
P+ A + KALD +NQ
Sbjct: 68 SYSPPQFAIKEAQKALDIPM--VNQ 90
>3gpv_A Transcriptional regulator, MERR family; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
1.90A {Bacillus thuringiensis serovarkonkukian}
Length = 148
Score = 24.3 bits (53), Expect = 8.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 18 LIKALDDAGISINQVQQACCGYVYGDSTCGQR 49
+I L + G+ I +++Q + GDST R
Sbjct: 65 MILCLKNTGMPIQKIKQFIDWSMEGDSTILHR 96
>3gwm_A Holo-[acyl-carrier-protein] synthase; HOMO-trimer, 9-stand pseudo
beta barrel protein, cytoplasm, fatty acid
biosynthesis; 1.70A {Mycobacterium smegmatis} PDB:
3h7q_A* 3ne3_B 3ne1_A 3hqj_A*
Length = 129
Score = 24.5 bits (54), Expect = 8.2
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 14 AKEALIKAL 22
AKEA+IKA
Sbjct: 55 AKEAVIKAW 63
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport,
transmembrane, inner membrane, membrane struc membrane
protein, membrane; 3.45A {Escherichia coli} SCOP:
b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Length = 286
Score = 24.6 bits (54), Expect = 8.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 16 EALIKALDDAGISI 29
E + + D AGIS
Sbjct: 255 ERIKREFDAAGISF 268
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli}
SCOP: c.14.1.3 PDB: 1ef9_A*
Length = 261
Score = 24.4 bits (54), Expect = 10.0
Identities = 4/28 (14%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 74 ALMLAKQFIESGSDCTL--ALGFEKMEK 99
A+ + K+ + + + FE+++
Sbjct: 205 AIAVIKEELRVLGEAHTMNSDEFERIQG 232
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.385
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,641,254
Number of extensions: 85709
Number of successful extensions: 496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 95
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)