RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13271
(110 letters)
>d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago
sativa) [TaxId: 3879]}
Length = 235
Score = 46.3 bits (109), Expect = 8e-08
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGD----STCGQRALYQIGMTGIPV 61
+ P L KEA +KA+ + G +++ G + L +
Sbjct: 98 VVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRY 157
Query: 62 FNVNNNCSTGSSALMLAKQFIESGSDCT-LALGFEKM 97
C G + L LAK E+ L + E
Sbjct: 158 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
>d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206
{Streptomyces coelicolor [TaxId: 1902]}
Length = 200
Score = 40.5 bits (94), Expect = 8e-06
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 5/92 (5%)
Query: 11 PELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIP----VFNVNN 66
+ +ALDDA + + G A M +
Sbjct: 76 KSRVPAVIQRALDDAELLATDIDVIIYVSCTGFMMPSLTAWLINEMGFDSTTRQIPIAQL 135
Query: 67 NCSTGSSALMLAKQFIESGSDCT-LALGFEKM 97
C+ G +A+ A F + + L + E
Sbjct: 136 GCAAGGAAINRAHDFCTAYPEANALIVACEFC 167
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 273
Score = 36.7 bits (84), Expect = 2e-04
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 5/92 (5%)
Query: 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIG-MTGIPV---- 61
+L AL +D +G+ +V+ G + + G PV
Sbjct: 21 SVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGFPVEVAG 80
Query: 62 FNVNNNCSTGSSALMLAKQFIESGSDCTLALG 93
VN C +G A+ A + I +G
Sbjct: 81 CTVNRLCGSGLEAVAQAARAIWAGEGKVYIGS 112
>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 372
Score = 34.8 bits (79), Expect = 0.001
Identities = 10/86 (11%), Positives = 24/86 (27%), Gaps = 4/86 (4%)
Query: 11 PELAKEALIKALDDAGISINQVQQ----ACCGYVYGDSTCGQRALYQIGMTGIPVFNVNN 66
LA + +AL ++ G++ + + V
Sbjct: 93 VPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFM 152
Query: 67 NCSTGSSALMLAKQFIESGSDCTLAL 92
C+ +AL A ++ + +
Sbjct: 153 GCAAAMNALGTATNYVRAHPAMKALV 178
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 29.7 bits (65), Expect = 0.046
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 36 CCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIESGSDCTLALGFE 95
+ + + + + GM G V + G AL A++ I G+ ++ G +
Sbjct: 129 YESFAWFYAVNTGQISIRHGMRGPSSALVAE-QAGGLDALGHARRTIRRGTPLVVSGGVD 187
Query: 96 KM 97
Sbjct: 188 SA 189
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera
[TaxId: 350]}
Length = 268
Score = 29.7 bits (66), Expect = 0.059
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 7 DTDYPELAKEALIKALDDAGISINQVQQACCGYVY---GDSTCGQRALYQIGMTGIPV-F 62
+T EL + L+ AG++ +V + G V ++A + G+ +
Sbjct: 24 NTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAW 83
Query: 63 NVNNNCSTGSSALMLAKQFIESGSDC 88
+N +G A+ L Q I +G
Sbjct: 84 GMNQLAGSGLRAVALGMQQIATGDAS 109
>d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 536
Score = 29.3 bits (66), Expect = 0.078
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 49 RALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIE 83
R L +G+ I + NVN + + ++ F+
Sbjct: 43 RLLASVGINAISINNVNVH---KTETKLITDHFLP 74
>d1adta2 g.51.1.1 (A:266-385) First Zn-domain of early E2A
DNA-binding protein, ADDBP {Human adenovirus type 5
[TaxId: 28285]}
Length = 120
Score = 25.6 bits (56), Expect = 1.0
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 24 DAGISINQVQQACCGYVYGDSTCGQRALYQI 54
DA NQ CG + + Q A QI
Sbjct: 77 DAACPANQFSGKSCGMFFSEGAKAQVAFKQI 107
>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL
{Escherichia coli [TaxId: 562]}
Length = 382
Score = 25.5 bits (54), Expect = 2.0
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 7 DTDYPELAKEALIKALDD 24
D D P +E L +
Sbjct: 37 DFDGPRYLQERLAHHVAQ 54
>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic
domain {Pseudomonas cellulosa [TaxId: 155077]}
Length = 561
Score = 25.1 bits (55), Expect = 2.1
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 49 RALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIE 83
R +G+ G + NVN + +L+ QF++
Sbjct: 44 RINASLGINGTVINNVNAD------PRVLSDQFLQ 72
>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId:
158]}
Length = 394
Score = 25.1 bits (53), Expect = 2.2
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 7 DTDYPELAKEALIKALDD 24
+ P E L K LD+
Sbjct: 42 EFKNPPELIEGLKKYLDE 59
>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I
{Human (Homo sapiens) [TaxId: 9606]}
Length = 418
Score = 24.7 bits (52), Expect = 2.9
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 7 DTDYPELAKEALIKALDDAGISINQ 31
D P+ A EA A+ +NQ
Sbjct: 36 DFPPPDFAVEAFQHAVSG-DFMLNQ 59
>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 395
Score = 24.5 bits (52), Expect = 3.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 7 DTDYPELAKEALIKALDDA 25
D PE KEA KA+ +
Sbjct: 44 DFQPPEHMKEAYCKAIKEG 62
>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus
cereus [TaxId: 1396]}
Length = 257
Score = 24.7 bits (52), Expect = 3.3
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 7/74 (9%)
Query: 32 VQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNCSTGSSALMLAKQFIESGSDCTLA 91
V GD+ + GM + V GSS L L ++ +E+ L
Sbjct: 171 VYPMNHMIKVGDTVSDMKEGRNAGMWTVGV-------ILGSSELGLTEEEVENMDSVELR 223
Query: 92 LGFEKMEKGSLGAK 105
E + +
Sbjct: 224 EKIEVVRNRFVENG 237
>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus
thermophilus [TaxId: 274]}
Length = 368
Score = 24.7 bits (52), Expect = 3.4
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 7 DTDYPELAKEALIKALDDA 25
P EA+ +AL
Sbjct: 36 SNPPPPFLLEAVRRALGRQ 54
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 24.0 bits (51), Expect = 5.4
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 7 DTDYPELAKEALIKALDD 24
D D P+ KE +ALD
Sbjct: 36 DFDTPQHIKEYAKEALDK 53
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 24.0 bits (51), Expect = 5.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 7 DTDYPELAKEALIKALDD 24
D D PE KEA +AL
Sbjct: 42 DFDTPEHVKEAARRALAQ 59
>d1gjsa_ a.8.1.2 (A:) IgG binding protein G {Streptococcus sp.,
group G [TaxId: 1306]}
Length = 65
Score = 22.6 bits (48), Expect = 6.6
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 3 KPKEDTDYPEL--AKEALIKALDDAGIS---INQVQQA 35
+ E D L AK + LD G+S N + A
Sbjct: 10 QHDEAVDANSLAEAKVLANRELDKYGVSDYYKNLINNA 47
>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 290
Score = 23.6 bits (50), Expect = 6.7
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 67 NCSTGSSALMLAKQFIESGSDCTLALG 93
N S+G A+ F+ +G
Sbjct: 42 NFSSGRRGATSAEAFLAAGYGVLFLYR 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.385
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 396,556
Number of extensions: 15841
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 20
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.6 bits)