Query psy13274
Match_columns 82
No_of_seqs 37 out of 39
Neff 3.1
Searched_HMMs 46136
Date Sat Aug 17 00:36:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00041 CT C-terminal cysti 99.1 5.3E-11 1.1E-15 75.8 3.8 62 1-76 18-79 (82)
2 PF03045 DAN: DAN domain; Int 98.6 7.8E-08 1.7E-12 65.9 4.4 69 1-78 49-120 (121)
3 PF00007 Cys_knot: Cystine-kno 97.9 6E-06 1.3E-10 54.3 2.1 67 1-79 24-90 (105)
4 PF05463 Sclerostin: Sclerosti 68.4 4 8.7E-05 31.3 2.1 60 5-75 92-156 (198)
5 smart00141 PDGF Platelet-deriv 54.4 43 0.00094 21.9 4.8 18 59-76 66-83 (83)
6 cd03576 NTR_PCOLCE NTR domain, 46.2 60 0.0013 22.6 4.7 56 9-75 20-77 (124)
7 cd09030 DUF1425 Putative perip 42.7 25 0.00054 22.6 2.3 23 46-68 56-78 (101)
8 PHA02661 vascular endothelial 38.7 1.1E+02 0.0023 22.2 5.3 57 1-76 74-132 (146)
9 PF07233 DUF1425: Protein of u 37.2 27 0.00059 22.5 1.8 23 46-68 48-70 (94)
10 cd00135 PDGF Platelet-derived 36.5 1.2E+02 0.0026 19.6 5.2 19 58-76 67-85 (86)
11 PF05806 Noggin: Noggin; Inte 34.0 56 0.0012 24.8 3.3 58 7-75 161-218 (219)
12 PF09102 Exotox-A_target: Exot 32.8 32 0.0007 25.2 1.8 17 39-56 124-140 (143)
13 PF01684 ET: ET module; Inter 24.3 55 0.0012 21.4 1.6 14 3-16 17-30 (82)
14 PF04570 DUF581: Protein of un 23.4 22 0.00047 22.2 -0.4 28 17-44 8-35 (58)
15 PF00341 PDGF: PDGF/VEGF domai 21.5 1.1E+02 0.0025 19.1 2.6 17 58-74 66-82 (82)
No 1
>smart00041 CT C-terminal cystine knot-like domain (CTCK). The structures of transforming growth factor-beta (TGFbeta), nerve growth factor (NGF), platelet-derived growth factor (PDGF) and gonadotropin all form 2 highly twisted antiparallel pairs of beta-strands and contain three disulphide bonds. The domain is non-globular and little is conserved among these presumed homologues except for their cysteine residues. CT domains are predicted to form homodimers.
Probab=99.13 E-value=5.3e-11 Score=75.84 Aligned_cols=62 Identities=26% Similarity=0.561 Sum_probs=52.7
Q ss_pred CceecccccccccccceeeCCCCcceeeeeccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecCCCCeeeee
Q psy13274 1 IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYK 76 (82)
Q Consensus 1 V~V~kCeG~C~SqVqpSv~~~~gf~k~C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP~dC~C~~ 76 (82)
|.++.|+|.|+|..+||.+ +.| ..|.||++...+.+.|+|. |+| ..++..+++.+.+|.|+.
T Consensus 18 v~~~~C~G~C~s~~~~~~~--~~~-~~c~CC~p~~~~~~~v~l~-C~d----------g~~~~~~v~~i~~C~C~~ 79 (82)
T smart00041 18 VKNAFCEGKCGSASSYSIQ--DVQ-HSCSCCQPHKTKTRQVRLR-CPD----------GSTVKKTVMHIEECGCEP 79 (82)
T ss_pred EEcCcEEeECCCeeEcCcc--ccc-cCCCccCCceeEEEEEEEE-CCC----------CCEEEEEEEEEEeccccc
Confidence 5678999999999999882 344 4599999999999999997 983 335888999999999987
No 2
>PF03045 DAN: DAN domain; InterPro: IPR004133 This domain contains 9 conserved cysteines and is extracellular. Therefore the cysteines may form disulphide bridges. This family of proteins has been termed the DAN family [] after the first member to be reported. This family includes DAN, Cerberus and Gremlin. The gremlin protein is an antagonist of bone morphogenetic protein signalling. It is postulated that all members of this family antagonize different TGF beta TGF-beta ligands [].
Probab=98.58 E-value=7.8e-08 Score=65.90 Aligned_cols=69 Identities=28% Similarity=0.627 Sum_probs=52.2
Q ss_pred CceecccccccccccceeeCCC---CcceeeeeccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecCCCCeeeeec
Q psy13274 1 IAVNKCEGACNSQVQPSVITPN---GFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYKC 77 (82)
Q Consensus 1 V~V~kCeG~C~SqVqpSv~~~~---gf~k~C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP~dC~C~~C 77 (82)
|..+.|.|.|+|-.+|+-...+ +...+|.+|+.+..++..|+|. |++.. . +...+.|.+- .+|+|..|
T Consensus 49 I~N~~C~GqC~S~~iP~~~~~~~~~~~~~~C~~C~P~~~~~~~V~L~-C~~~~-----~-~~~~k~v~~v--~~C~C~~~ 119 (121)
T PF03045_consen 49 IQNNFCFGQCSSFYIPSSVPSDPGSQPFQSCSCCQPSRFRWVTVTLR-CPGGS-----P-PFRVKRVQIV--EECSCSSC 119 (121)
T ss_pred EEeeeeEEEcceEEeeCCcccccccccCcccCccCCCeeEEEEEEEE-CcCCC-----C-CcceEEEEEe--eecccCcc
Confidence 4578999999999998884222 2489999999999999999999 99666 2 1113444443 49999987
Q ss_pred C
Q psy13274 78 G 78 (82)
Q Consensus 78 ~ 78 (82)
.
T Consensus 120 ~ 120 (121)
T PF03045_consen 120 S 120 (121)
T ss_pred c
Confidence 4
No 3
>PF00007 Cys_knot: Cystine-knot domain; InterPro: IPR006208 This domain is found at the C-terminal of glycoprotein hormones and various extracellular proteins. It is believed to be involved in disulphide-linked dimerisation. ; PDB: 1QFW_B 1HRP_B 1HCN_B 1XWD_B 1FL7_B.
Probab=97.91 E-value=6e-06 Score=54.26 Aligned_cols=67 Identities=27% Similarity=0.582 Sum_probs=46.4
Q ss_pred CceecccccccccccceeeCCCCcceeeeeccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecCCCCeeeeecCC
Q psy13274 1 IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYKCGD 79 (82)
Q Consensus 1 V~V~kCeG~C~SqVqpSv~~~~gf~k~C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP~dC~C~~C~~ 79 (82)
|.++.|+|.|.|.-..+.. +..+...|.||++.-..++.|.|. |+| +....+++.....|.|..|..
T Consensus 24 v~~~~C~G~C~s~~~~~~~-~~~~~~~~~Cc~~~~~~~~~v~~~-C~~----------G~~~~~~y~~a~sC~C~~C~~ 90 (105)
T PF00007_consen 24 VNTTYCSGYCESSEPYSKD-PRKFQSQCVCCYPERTYETVVLLG-CPD----------GVDPTFTYPVATSCSCSNCNT 90 (105)
T ss_dssp EEEEEEEEEEEEE--SCTT-TTT----EEEEEEEEEEEEEEETT-BTT----------CS-EEEEEEEEEEEEEEEEET
T ss_pred EEEEEEEEEecCCeEeccc-CCcCcccCcCCCcceEEEEEECCC-Ccc----------CCcceEEeeEeeeeeCCCCCC
Confidence 5689999999997744444 778899999999987776665555 993 334567778888999999964
No 4
>PF05463 Sclerostin: Sclerostin (SOST); InterPro: IPR008835 This family contains several mammalian sclerostin (SOST) proteins. SOST is thought to suppress bone formation. Mutations of the SOST gene lead to sclerosteosis, a progressive sclerosing bone dysplasia with an autosomal recessive mode of inheritance. Radiologically, it is characterised by a generalised hyperostosis and sclerosis leading to a markedly thickened and sclerotic skull, with mandible, ribs, clavicles and all long bones also being affected. Due to narrowing of the foramina of the cranial nerves, facial nerve palsy, hearing loss and atrophy of the optic nerves can occur. Sclerosteosis is clinically and radiologically very similar to van Buchem disease, mainly differentiated by hand malformations and a large stature in sclerosteosis patients [].; GO: 0005615 extracellular space; PDB: 2KD3_A 3SOV_Z 2K8P_A.
Probab=68.44 E-value=4 Score=31.31 Aligned_cols=60 Identities=23% Similarity=0.511 Sum_probs=30.3
Q ss_pred cccccccc-cccceeeCCCC-ccee---eeeccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecCCCCeeee
Q psy13274 5 KCEGACNS-QVQPSVITPNG-FLKE---CYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCY 75 (82)
Q Consensus 5 kCeG~C~S-qVqpSv~~~~g-f~k~---C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP~dC~C~ 75 (82)
-|.|.|-. ++-|+.|.-.. +.|. =+-|--..-|-+-|+|. |+ +..+++++++.-.-|+|-
T Consensus 92 vCsGqClP~~llPn~Ig~~k~W~R~~~~e~RCv~d~~RtqrVqL~-C~----------dG~tRTyKI~vVtSCKCK 156 (198)
T PF05463_consen 92 VCSGQCLPAHLLPNWIGRGKYWWRRSAQEWRCVPDHTRTQRVQLQ-CP----------DGTTRTYKIRVVTSCKCK 156 (198)
T ss_dssp EE----S-----TTSTTSSS-SSSSS------EEEEEEEEEEEEE--T----------TTSSEEEEEEEEEEEE--
T ss_pred eeeccccccccCcccccccceecccCCCcccccCCcceeEEEEEE-CC----------CCCeeEEEEEEEEEeeec
Confidence 47888876 55565551111 1111 13455667789999999 99 355688999999999884
No 5
>smart00141 PDGF Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family. Platelet-derived growth factor is a potent activator for cells of mesenchymal origin. PDGF-A and PDGF-B form AA and BB homodimers and an AB heterodimer. Members of the VEGF family are homologues of PDGF.
Probab=54.41 E-value=43 Score=21.86 Aligned_cols=18 Identities=17% Similarity=0.639 Sum_probs=15.8
Q ss_pred CceEEEEecCCCCeeeee
Q psy13274 59 MATLDIKLKEPADCKCYK 76 (82)
Q Consensus 59 ~~~~~v~lreP~dC~C~~ 76 (82)
.+...|++.+=.+|.|++
T Consensus 66 ~~~~~v~~~~H~~C~C~p 83 (83)
T smart00141 66 QGLVEVSFEEHTKCECRP 83 (83)
T ss_pred CcEEEEEecccceeeeeC
Confidence 468889999999999985
No 6
>cd03576 NTR_PCOLCE NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are extracellular matrix proteins that enhance the activity of procollagen C-proteases, by binding to the procollagen I C-peptide. They contain a C-terminal NTR domain, which have been suggested to possess inhibitory functions towards specific serine proteases but not towards metzincins, which are inhibited by the related TIMPs.
Probab=46.16 E-value=60 Score=22.62 Aligned_cols=56 Identities=16% Similarity=0.300 Sum_probs=39.7
Q ss_pred cccc--cccceeeCCCCcceeeeeccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecCCCCeeee
Q psy13274 9 ACNS--QVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCY 75 (82)
Q Consensus 9 ~C~S--qVqpSv~~~~gf~k~C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP~dC~C~ 75 (82)
.|.| .|++.|+. .++ +.+--.++|++..=|+..+++|.. .+.+|.|+++- .+|+|.
T Consensus 20 yC~sdfaI~g~V~~---~~~------~~~~~~~tv~i~~vyK~g~l~l~~-~~~~l~V~~~~-~~~~CP 77 (124)
T cd03576 20 YCSSEFVITGTVIS---MTR------GPGSLHATVSIIKLYKEGRLAITQ-AGKTMSVKITV-VCKQCP 77 (124)
T ss_pred cccCCceEEEEEEE---EEE------cCCeEEEEEEeeeeeecCCcccCc-CCceEEEEecc-cccCCC
Confidence 4566 56666663 332 334456788888899999999998 67899999965 567764
No 7
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=42.68 E-value=25 Score=22.63 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=18.3
Q ss_pred ccCCCCCcccCCCCceEEEEecC
Q psy13274 46 CYDPDGMRLTSEKMATLDIKLKE 68 (82)
Q Consensus 46 C~d~~g~~l~g~~~~~~~v~lre 68 (82)
=||++|..+.++...+..+.|.+
T Consensus 56 WyD~~G~~v~~~~~~w~~l~l~~ 78 (101)
T cd09030 56 WYDAQGLEVEPEQEPWQSLTLPG 78 (101)
T ss_pred EECCCCCCcCCCCCCCEEEEECC
Confidence 36999999999548888887764
No 8
>PHA02661 vascular endothelial growth factor like protein; Provisional
Probab=38.73 E-value=1.1e+02 Score=22.24 Aligned_cols=57 Identities=23% Similarity=0.474 Sum_probs=33.2
Q ss_pred CceecccccccccccceeeCCCCcceeeeeccccceeeeeEEeee--ccCCCCCcccCCCCceEEEEecCCCCeeeee
Q psy13274 1 IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTH--CYDPDGMRLTSEKMATLDIKLKEPADCKCYK 76 (82)
Q Consensus 1 V~V~kCeG~C~SqVqpSv~~~~gf~k~C~CCrEsglrer~V~L~~--C~d~~g~~l~g~~~~~~~v~lreP~dC~C~~ 76 (82)
|.|..|-|=|++.-.- |+=+..+..+++++. =+... |...+...|++.+=.+|.|++
T Consensus 74 V~V~RCgGCCnde~l~--------------C~PT~t~nVtm~v~ki~~~~~~-----g~~~~~~~vsf~eHt~C~C~~ 132 (146)
T PHA02661 74 VTVRRCGGCCNDESQI--------------CTPTETSNVTVTVMLTSVSGST-----GATSNFQTISVEEHTKCKCEF 132 (146)
T ss_pred EEeccccCCCCCCCCe--------------EEeeeEEEEEEEEEEEeeccCC-----CCccceEEEEEeccCceeccc
Confidence 5688899999874321 122233344444431 11111 212467889999999999984
No 9
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=37.17 E-value=27 Score=22.54 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=11.5
Q ss_pred ccCCCCCcccCCCCceEEEEecC
Q psy13274 46 CYDPDGMRLTSEKMATLDIKLKE 68 (82)
Q Consensus 46 C~d~~g~~l~g~~~~~~~v~lre 68 (82)
=||++|..+.++...+..+.|.+
T Consensus 48 WyD~~G~~v~~~~~~w~~~~l~~ 70 (94)
T PF07233_consen 48 WYDKQGLEVDPEQSPWQSLTLPG 70 (94)
T ss_dssp EE-TTS-EE--TT---EEEEE-T
T ss_pred EECCCCCCcCCCCCCCEEEEEcC
Confidence 58999999988547788877764
No 10
>cd00135 PDGF Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family domain; PDGF is a potent activator for cells of mesenchymal origin; PDGF-A and PDGF-B form AA and BB homodimers and an AB heterodimer; VEGF is a potent mitogen in embryonic and somatic angiogenesis with a unique specificity for vascular endothelial cells; VEGF forms homodimers and exists in 4 different isoforms; overall, the VEGF monomer resembles that of PDGF, but its N-terminal segment is helical rather than extended; the cysteine knot motif is a common feature of this domain
Probab=36.48 E-value=1.2e+02 Score=19.61 Aligned_cols=19 Identities=21% Similarity=0.684 Sum_probs=16.5
Q ss_pred CCceEEEEecCCCCeeeee
Q psy13274 58 KMATLDIKLKEPADCKCYK 76 (82)
Q Consensus 58 ~~~~~~v~lreP~dC~C~~ 76 (82)
..+...|.+.+=.+|.|+.
T Consensus 67 ~~~~~~i~~~~Ht~C~C~~ 85 (86)
T cd00135 67 RSKLVEISFEEHTECECRP 85 (86)
T ss_pred CCcEEEEEEeccCccccEe
Confidence 4678889999999999985
No 11
>PF05806 Noggin: Noggin; InterPro: IPR008717 This family consists of the eukaryotic Noggin proteins. Noggin is a glycoprotein that binds bone morphogenetic proteins (BMPs) selectively and, when added to osteoblasts, it opposes the effects of BMPs. It has been found that noggin arrests the differentiation of stromal cells, preventing cellular maturation [].; GO: 0045596 negative regulation of cell differentiation; PDB: 1M4U_A.
Probab=34.04 E-value=56 Score=24.81 Aligned_cols=58 Identities=26% Similarity=0.476 Sum_probs=35.5
Q ss_pred cccccccccceeeCCCCcceeeeeccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecCCCCeeee
Q psy13274 7 EGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCY 75 (82)
Q Consensus 7 eG~C~SqVqpSv~~~~gf~k~C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP~dC~C~ 75 (82)
+|.|.|. .|-.||.| |-|++++.+.-+|=-.||.... .|..=+++.|..--=.+|+|.
T Consensus 161 ~g~C~s~--~SCS~P~G-----M~Ckp~~s~~l~iLrW~C~~~~----~~~~C~W~~v~ypIi~~C~Cs 218 (219)
T PF05806_consen 161 EGSCVSR--RSCSWPPG-----MTCKPSKSKTLTILRWHCQGRS----SGKYCKWIPVQYPIISECKCS 218 (219)
T ss_dssp EEE---S--S--SSSS-------EEEEEEEEEEEEEEEEE--SG----GG-SEEEEEEEEEEEEEEEEE
T ss_pred eeeecCC--CCcCCCcC-----ceeccCccceEEEEEEEccCCC----CCCeeeEEEEcccEEeeEEec
Confidence 4677653 44556777 4599999999999999997543 444556777777666788885
No 12
>PF09102 Exotox-A_target: Exotoxin A, targeting; InterPro: IPR015186 This domain, found in Pseudomonas aeruginosa exotoxin A, is responsible for transmembrane targeting of the toxin, as well as transmembrane translocation of the catalytic domain into the cytoplasmic compartment. A furin cleavage site is present within the domain: cleavage generates a 37 kDa carboxy-terminal fragment, which includes the enzymatic domain, which is then is translocated into the cytoplasm. It adopts a helical structure, with six alpha-helices forming a bundle []. ; PDB: 1IKP_A 1IKQ_A 2Q5T_A 3Q9O_A.
Probab=32.82 E-value=32 Score=25.17 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=9.4
Q ss_pred eeEEeeeccCCCCCcccC
Q psy13274 39 RVITLTHCYDPDGMRLTS 56 (82)
Q Consensus 39 r~V~L~~C~d~~g~~l~g 56 (82)
-.|+|| |+|+||.-+.|
T Consensus 124 Di~SL~-CP~A~~~CvA~ 140 (143)
T PF09102_consen 124 DILSLF-CPDADKSCVAS 140 (143)
T ss_dssp EEEEEE---STTSS---S
T ss_pred ccceee-cccccccccCC
Confidence 357888 99999876665
No 13
>PF01684 ET: ET module; InterPro: IPR002603 The proteins in this entry have no known function, and are found in Caenorhabditis elegans and in Caenorhabditis briggsae. Each repeat contains 8-10 conserved cysteines that probably form 4-5 disulphide bridges. By inspection of the conservation of cysteines it looks like cysteines 1, 2, 3, 4, 9 and 10 are always present and that sometimes the pair 5 and 8 or the pair 6 and 7 are missing. This suggests that cysteines 5/8 and 6/7 make disulphide bridges.
Probab=24.28 E-value=55 Score=21.45 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=10.2
Q ss_pred eecccccccccccc
Q psy13274 3 VNKCEGACNSQVQP 16 (82)
Q Consensus 3 V~kCeG~C~SqVqp 16 (82)
-..|+|.|.|...-
T Consensus 17 ~~~C~G~CaSvs~~ 30 (82)
T PF01684_consen 17 EVACQGQCASVSIT 30 (82)
T ss_pred eEEeCCEEEEEEEE
Confidence 35799999996543
No 14
>PF04570 DUF581: Protein of unknown function (DUF581); InterPro: IPR007650 This is a family of uncharacterised proteins.
Probab=23.37 E-value=22 Score=22.22 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=21.6
Q ss_pred eeeCCCCcceeeeeccccceeeeeEEee
Q psy13274 17 SVITPNGFLKECYCCRESYLRERVITLT 44 (82)
Q Consensus 17 Sv~~~~gf~k~C~CCrEsglrer~V~L~ 44 (82)
+...+..|+++|+.|+..--..+.|=++
T Consensus 8 ~~~~~~~FL~~C~~C~k~L~~~~DiymY 35 (58)
T PF04570_consen 8 SPFPSEHFLSFCYLCKKKLDPGKDIYMY 35 (58)
T ss_pred CCCCcHHHHHHHHccCCCCCCCCCeeee
Confidence 3445779999999999976557777766
No 15
>PF00341 PDGF: PDGF/VEGF domain; InterPro: IPR000072 Platelet-derived growth factor (PDGF) [, ] is a potent mitogen for cells of mesenchymal origin, including smooth muscle cells and glial cells. In both mouse and human, the PDGF signalling network consists of four ligands, PDGFA-D, and two receptors, PDGFRalpha and PDGFRbeta. All PDGFs function as secreted, disulphide-linked homodimers, but only PDGFA and B can form functional heterodimers. PDGFRs also function as homo- and heterodimers. All known PDGFs have characteristic `PDGF domains', which include eight conserved cysteines that are involved in inter- and intramolecular bonds. Alternate splicing of the A chain transcript can give rise to two different forms that differ only in their C-terminal extremity. The transforming protein of Woolly monkey sarcoma virus (WMSV) (Simian sarcoma virus), encoded by the v-sis oncogene, is derived from the B chain of PDGF. PDGFs are mitogenic during early developmental stages, driving the proliferation of undifferentiated mesenchyme and some progenitor populations. During later maturation stages, PDGF signalling has been implicated in tissue remodelling and cellular differentiation, and in inductive events involved in patterning and morphogenesis. In addition to driving mesenchymal proliferation, PDGFs have been shown to direct the migration, differentiation and function of a variety of specialised mesenchymal and migratory cell types, both during development and in the adult animal []. Other growth factors in this family include vascular endothelial growth factors B and C (VEGF-B, VEGF-C) [, ] which are active in angiogenesis and endothelial cell growth, and placenta growth factor (PlGF) which is also active in angiogenesis []. PDGF is structurally related to a number of other growth factors which also form disulphide-linked homo- or heterodimers.; GO: 0008083 growth factor activity, 0016020 membrane; PDB: 1WQ9_B 1RV6_W 1FZV_B 3MJK_Y 2XAC_B 2C7W_B 2VWE_A 2FJG_V 2QR0_U 1MJV_A ....
Probab=21.48 E-value=1.1e+02 Score=19.13 Aligned_cols=17 Identities=18% Similarity=0.722 Sum_probs=13.7
Q ss_pred CCceEEEEecCCCCeee
Q psy13274 58 KMATLDIKLKEPADCKC 74 (82)
Q Consensus 58 ~~~~~~v~lreP~dC~C 74 (82)
......|.+.+=.+|.|
T Consensus 66 ~~~~~~i~~~~Ht~C~C 82 (82)
T PF00341_consen 66 SSKIVEISFENHTECEC 82 (82)
T ss_dssp EEEEEEEEEEEEEEEEE
T ss_pred cceEEEEEecccCCccC
Confidence 46677888888888887
Done!