Query psy13274
Match_columns 82
No_of_seqs 37 out of 39
Neff 3.1
Searched_HMMs 29240
Date Sat Aug 17 00:36:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k8p_A Sclerostin; WNT signall 92.4 0.17 5.8E-06 37.4 4.5 60 3-75 78-144 (189)
2 1hcn_B Human chorionic gonadot 88.2 0.26 8.8E-06 34.7 2.3 67 1-79 29-95 (145)
3 4ay9_B Follitropin subunit bet 68.9 4.3 0.00015 27.3 3.1 65 1-79 23-89 (111)
4 1mkk_A Vascular endothelial gr 44.8 25 0.00086 22.4 3.6 55 1-76 40-94 (96)
5 3o0l_A Uncharacterized protein 42.7 17 0.00058 23.6 2.5 23 46-68 62-84 (112)
6 2oqb_A Histone-arginine methyl 41.5 34 0.0012 23.3 3.9 37 38-74 31-70 (117)
7 2vwe_A Vascular endothelial gr 34.5 52 0.0018 22.7 4.1 20 58-77 87-106 (167)
8 1fzv_A PLGF-1, placenta growth 33.8 55 0.0019 22.1 4.0 56 1-77 61-116 (132)
9 2gnn_A Vascular endothelial gr 33.7 49 0.0017 22.3 3.8 58 1-79 48-105 (127)
10 2c7w_A Vascular endothelial gr 32.6 46 0.0016 21.3 3.3 18 59-76 79-96 (99)
11 1wq8_A VR-1, VEGF-F, vascular 27.1 69 0.0023 20.9 3.5 21 59-79 77-98 (110)
12 1jiw_I Proteinase inhibitor; p 26.4 23 0.00078 23.4 1.1 37 30-68 48-84 (106)
13 1smp_I Erwinia chrysanthemi in 24.8 19 0.00067 23.6 0.5 36 31-68 46-81 (101)
14 2ds4_A Tripartite motif protei 24.6 78 0.0027 18.9 3.2 31 37-69 28-58 (113)
15 4gio_A Putative lipoprotein; u 20.3 73 0.0025 20.4 2.6 23 46-68 58-81 (107)
No 1
>2k8p_A Sclerostin; WNT signalling pathway, bone formation, alternative splicing, glycoprotein, secreted, signaling protein; NMR {Homo sapiens} PDB: 2kd3_A
Probab=92.38 E-value=0.17 Score=37.41 Aligned_cols=60 Identities=23% Similarity=0.434 Sum_probs=43.6
Q ss_pred eecccccccc-cccceee-----CCCCcceeeeeccccceeeeeEEeeeccCCCCCcccCCCCce-EEEEecCCCCeeee
Q psy13274 3 VNKCEGACNS-QVQPSVI-----TPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMAT-LDIKLKEPADCKCY 75 (82)
Q Consensus 3 V~kCeG~C~S-qVqpSv~-----~~~gf~k~C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~-~~v~lreP~dC~C~ 75 (82)
-..|.|.|.+ .+.|+++ | ..-..+ .||.-.-.|.|.|+|. |. |..+ ...+++-...|+|.
T Consensus 78 ~lvCsG~C~p~~~lpn~i~~~K~w-r~s~~~-~cCvp~rsRrrRIqm~-C~----------DGtt~rt~ki~vV~sCkCk 144 (189)
T 2k8p_A 78 ELVCSGQCGPARLLPNAIGRGKWW-RPSGPD-FRCIPDRYRAQRVQLL-CP----------GGEAPRARKVRLVASCKCK 144 (189)
T ss_dssp EEEECCCCCCCCCCSSCCCSSCCC-SCCCCC-CCCEECCEEEEEEEEE-CC----------TTSCCEEEEEEEECCEECC
T ss_pred cceEeccccCcccccccccccccc-ccCCCc-ccccCCceeeEEEEEE-cC----------CCCeeeEEEEEEEEeeccc
Confidence 3569999975 5556555 3 111113 3999999999999999 99 3445 67777889999986
No 2
>1hcn_B Human chorionic gonadotropin; hormone; HET: NAG; 2.60A {Homo sapiens} SCOP: g.17.1.4 PDB: 1hrp_B* 1qfw_B*
Probab=88.22 E-value=0.26 Score=34.71 Aligned_cols=67 Identities=16% Similarity=0.290 Sum_probs=46.2
Q ss_pred CceecccccccccccceeeCCCCcceeeeeccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecCCCCeeeeecCC
Q psy13274 1 IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYKCGD 79 (82)
Q Consensus 1 V~V~kCeG~C~SqVqpSv~~~~gf~k~C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP~dC~C~~C~~ 79 (82)
|+++.|.|.|.|.- |+...+-.- -.=.+|.-..++-++|.|-.|.. |-+. .+++.....|.|.+|.-
T Consensus 29 InTtiC~GyC~T~d-pv~~~p~~~-~~Q~vCTy~e~~y~tv~LpgC~~-------gvdp---~~tYPVA~SC~C~~C~~ 95 (145)
T 1hcn_B 29 VNTTICAGYCPTMT-RVLQGVLPA-LPQVVCNYRDVRFESIRLPGCPR-------GVNP---VVSYAVALSCQCALCRR 95 (145)
T ss_dssp EEEEEEEEEEEECC-CCBTTCSSC-CCCEEEEEEEEEEEEEECTTCCS-------SCCC---EEEEEEEEEEEEEECCT
T ss_pred EEeeeEcCEeecCC-CCCcCCCCC-ccCCCcccCCEEEEEEEcCCCcC-------CCCc---cEEecccccccCCCCCC
Confidence 56789999999976 544332111 11157888888999999988972 3122 46677788999999964
No 3
>4ay9_B Follitropin subunit beta; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_B* 1fl7_B*
Probab=68.88 E-value=4.3 Score=27.32 Aligned_cols=65 Identities=20% Similarity=0.380 Sum_probs=44.9
Q ss_pred CceecccccccccccceeeCC--CCcceeeeeccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecCCCCeeeeecC
Q psy13274 1 IAVNKCEGACNSQVQPSVITP--NGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYKCG 78 (82)
Q Consensus 1 V~V~kCeG~C~SqVqpSv~~~--~gf~k~C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP~dC~C~~C~ 78 (82)
|++..|.|.|.+.- |....| .-+.+- |--..++-++|.|-+|+ .|-+. .+..-....|.|.+|.
T Consensus 23 i~TtiC~G~C~T~d-~v~~~p~~~~~Q~V---Cty~~~~y~tv~LpgC~-------pgVdP---~~tYPVA~sC~C~~C~ 88 (111)
T 4ay9_B 23 INTTWCAGYCYTRD-LVYKDPARPKIQKT---CTFKELVYETVRVPGCA-------HHADS---LYTYPVATQCHCGKCD 88 (111)
T ss_dssp EEEEEEEEEEEEEC-CSSCCTTCCCCCCE---EEEEEEEEEEEEECCCT-------TSCCE---EEEEEEEEEEEEECBC
T ss_pred EEEeeEccCcccCC-ccccCcCCCccCCC---cccCCEEEEEEECCCcc-------CCCCC---CEEeeecccccCCCcC
Confidence 56788999999954 322222 233444 44457888999999998 34233 5777788899999996
Q ss_pred C
Q psy13274 79 D 79 (82)
Q Consensus 79 ~ 79 (82)
-
T Consensus 89 t 89 (111)
T 4ay9_B 89 S 89 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 4
>1mkk_A Vascular endothelial growth factor A; cystine-knot growth factor, hormone/growth factor complex; 1.32A {Homo sapiens} SCOP: g.17.1.1 PDB: 2qr0_C 1flt_V 1kat_V 3qtk_A 1qty_V 1tzh_V 1tzi_V 1vpf_A 1bj1_V 2fjg_V 2fjh_V 2vpf_A 3bdy_V 1vpp_V 3s1k_V 1cz8_V 3s1b_V 1mkg_A 1mjv_A
Probab=44.81 E-value=25 Score=22.38 Aligned_cols=55 Identities=11% Similarity=0.300 Sum_probs=33.4
Q ss_pred CceecccccccccccceeeCCCCcceeeeeccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecCCCCeeeee
Q psy13274 1 IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYK 76 (82)
Q Consensus 1 V~V~kCeG~C~SqVqpSv~~~~gf~k~C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP~dC~C~~ 76 (82)
|.|..|-|=|++-- .-|+=+..+...++++. .++. . ......|.+.+=.+|.|++
T Consensus 40 v~v~RCgGCC~~e~--------------l~C~Pt~t~~v~~~v~~-i~~~-----~-~~~~~~v~~~~H~~C~C~~ 94 (96)
T 1mkk_A 40 VPLMRCGGCANDEG--------------LECVPTEESNITMQIMR-IKPH-----Q-GQHIGEMSFLQHNKCEARP 94 (96)
T ss_dssp EEEEEEECCCCSSC--------------CEEEEEEEEEEEEEEEE-ECTT-----S-CCEEEEEEEEEEEEEEEEC
T ss_pred EEEecccCCCCCCC--------------cEEEcceEEEEEEEEEE-EEcc-----C-CCEEEEEEEEecCccccee
Confidence 45788888887631 12333344455555551 1111 2 2457889999999999985
No 5
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=42.70 E-value=17 Score=23.61 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=18.6
Q ss_pred ccCCCCCcccCCCCceEEEEecC
Q psy13274 46 CYDPDGMRLTSEKMATLDIKLKE 68 (82)
Q Consensus 46 C~d~~g~~l~g~~~~~~~v~lre 68 (82)
=||++|..+.+++..+..+.|.+
T Consensus 62 WyD~~Gl~v~~~~~~W~~l~l~~ 84 (112)
T 3o0l_A 62 WYDINGATVEDEGVSWKSLKLHG 84 (112)
T ss_dssp EECTTSCBCCCTTCCCEEEEECT
T ss_pred EECCCCCCcCCCCCCcEEEEECC
Confidence 68999999998657778877764
No 6
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulati activation domain; 1.69A {Rattus norvegicus}
Probab=41.45 E-value=34 Score=23.33 Aligned_cols=37 Identities=16% Similarity=0.361 Sum_probs=28.1
Q ss_pred eeeEEeeeccCCCCCcc--cC-CCCceEEEEecCCCCeee
Q psy13274 38 ERVITLTHCYDPDGMRL--TS-EKMATLDIKLKEPADCKC 74 (82)
Q Consensus 38 er~V~L~~C~d~~g~~l--~g-~~~~~~~v~lreP~dC~C 74 (82)
+..|+|.-.|||+|+-| .. ++.-..++.+..-.||..
T Consensus 31 ~q~v~L~~~ydpqg~sv~i~~~~~~~l~ef~V~~~TEc~r 70 (117)
T 2oqb_A 31 QQALRLEVRAGPDAAGIALYSHEDVCVFKCSVSRETECSR 70 (117)
T ss_dssp EEEEEEEEEECSSEEEEEEECTTCCEEEEEEEETTSEEEE
T ss_pred CceEEEEEEECCCCcEEEEEcCCCeEEEEEEecCCcccee
Confidence 47899999999999754 44 256677888888888864
No 7
>2vwe_A Vascular endothelial growth factor B; immune system, glycoprotein, cysteine-knot, growth factor, mitogen, secreted, angiogenesis, neutralizing antibody; 3.40A {Homo sapiens}
Probab=34.50 E-value=52 Score=22.73 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=15.4
Q ss_pred CCceEEEEecCCCCeeeeec
Q psy13274 58 KMATLDIKLKEPADCKCYKC 77 (82)
Q Consensus 58 ~~~~~~v~lreP~dC~C~~C 77 (82)
....+.|.+.+-.+|.|++=
T Consensus 87 ~~~~~~v~~~~Ht~C~C~~k 106 (167)
T 2vwe_A 87 SSQLGEMSLEEHSQCECRPK 106 (167)
T ss_dssp SCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEEEecccccceec
Confidence 35677888888888888763
No 8
>1fzv_A PLGF-1, placenta growth factor; cysteine-knot family, angiogenesis, hormone/growth factor complex; 2.00A {Homo sapiens} SCOP: g.17.1.1 PDB: 1rv6_V*
Probab=33.79 E-value=55 Score=22.08 Aligned_cols=56 Identities=13% Similarity=0.417 Sum_probs=34.0
Q ss_pred CceecccccccccccceeeCCCCcceeeeeccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecCCCCeeeeec
Q psy13274 1 IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYKC 77 (82)
Q Consensus 1 V~V~kCeG~C~SqVqpSv~~~~gf~k~C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP~dC~C~~C 77 (82)
|.|..|-|=|++--. -|+=+......++++. .+. .+ ....++|.+.+=.+|.|+.=
T Consensus 61 v~v~RCgGCC~~e~l--------------~C~Pt~t~~v~~~v~k-i~~-----~~-~~~~~~v~~e~Ht~C~C~~k 116 (132)
T 1fzv_A 61 VSLLRCTGCCGDENL--------------HCVPVETANVTMQLLK-IRS-----GD-RPSYVELTFSQHVRCECRPL 116 (132)
T ss_dssp EEEEEEECBCSSTTE--------------EEEEEEEEEEEEEEEE-CCT-----TS-CCEEEEEEEEEEEEEEEEEC
T ss_pred EEeccccccCCCCCc--------------EEecceEEEEEEEEEE-Eec-----CC-CceEEEEEeeccCCcccCcC
Confidence 457888888877321 1333333444455441 111 23 45678899999999999864
No 9
>2gnn_A Vascular endothelial growth factor homolog; VEGF, S-SAD,, hormone-growth factor complex; HET: NAG; 2.30A {Orf virus}
Probab=33.70 E-value=49 Score=22.28 Aligned_cols=58 Identities=16% Similarity=0.316 Sum_probs=32.1
Q ss_pred CceecccccccccccceeeCCCCcceeeeeccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecCCCCeeeeecCC
Q psy13274 1 IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYKCGD 79 (82)
Q Consensus 1 V~V~kCeG~C~SqVqpSv~~~~gf~k~C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP~dC~C~~C~~ 79 (82)
|.|..|-|=|++-.. -|+=+......++++ . +...+ ......|.|.+=.+|.|++=.+
T Consensus 48 v~V~RCgGCC~de~l--------------~C~Pt~t~~v~~~V~---k---i~~~~-~~~~~~v~~e~Ht~C~C~~k~~ 105 (127)
T 2gnn_A 48 VTLMRCGGCCNDESL--------------ECVPTEEVNVTMELL---G---ASGSG-SNGMQRLSFVEHKKCDCRPRFT 105 (127)
T ss_dssp EEEEEEESCBSSTTE--------------EEEEEEEEEEEEEEE---C-----------CEEEEEEEEEEEEEEEECCC
T ss_pred EEEecccCcCCCCCc--------------EEECCeEEEEEEEEE---E---EeccC-CCeEEEEEEeecCccccCcCCC
Confidence 457888888887311 122223344444444 1 11122 2457889999999999986543
No 10
>2c7w_A Vascular endothelial growth factor B precursor; angiogenesis, cysteine-knot motif, tyrosine kinase, ischemia, mitogen, glycoprotein; 2.48A {Homo sapiens} PDB: 2xac_A
Probab=32.63 E-value=46 Score=21.26 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=15.0
Q ss_pred CceEEEEecCCCCeeeee
Q psy13274 59 MATLDIKLKEPADCKCYK 76 (82)
Q Consensus 59 ~~~~~v~lreP~dC~C~~ 76 (82)
.....|.+.+=.+|.|++
T Consensus 79 ~~~~~v~~~~Ht~C~C~~ 96 (99)
T 2c7w_A 79 SQLGEMSLEEHSQCECRP 96 (99)
T ss_dssp EEEEEEEEEEEEEEEEEC
T ss_pred CcEEEEEEEecCCceeee
Confidence 456789999999999975
No 11
>1wq8_A VR-1, VEGF-F, vascular endothelial growth factor toxin; snake venom; 1.90A {Vipera aspis aspis} SCOP: g.17.1.1 PDB: 1wq9_A
Probab=27.14 E-value=69 Score=20.87 Aligned_cols=21 Identities=19% Similarity=0.556 Sum_probs=16.1
Q ss_pred CceEE-EEecCCCCeeeeecCC
Q psy13274 59 MATLD-IKLKEPADCKCYKCGD 79 (82)
Q Consensus 59 ~~~~~-v~lreP~dC~C~~C~~ 79 (82)
...++ |.+.+=.+|.|++=.+
T Consensus 77 ~~~~~vv~~~~Ht~C~C~~k~~ 98 (110)
T 1wq8_A 77 SSKMEVMKFTEHTACECRPRRK 98 (110)
T ss_dssp CEEEEEEEEEEEEEEEEECCCC
T ss_pred CceEEEEEEeecCCccCCccCc
Confidence 34566 8999999999986543
No 12
>1jiw_I Proteinase inhibitor; pseudomonas aeruginosa alkaline protease inhibitor, hydrolase/hyrolase inhibitor complex; 1.74A {Pseudomonas aeruginosa} SCOP: b.61.2.1 PDB: 2rn4_A
Probab=26.37 E-value=23 Score=23.43 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=28.2
Q ss_pred eccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecC
Q psy13274 30 CCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKE 68 (82)
Q Consensus 30 CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lre 68 (82)
.|-+.-|.+..+.=+ +.|||+.|++.+...+-..-|+
T Consensus 48 ~Cl~~~L~~~p~~W~--ptPdGi~L~~~dGs~l~ff~r~ 84 (106)
T 1jiw_I 48 ACLTRWLPSEPRAWR--PTPAGIALLERGGLTLMLLGRQ 84 (106)
T ss_dssp GGGGGTSSSCCCEEE--EETTEEEEECTTSCEEEEEEEE
T ss_pred hHHHHHhcCCCcccc--cCCCeEEEEcCCCCEEEeeeec
Confidence 477778888888877 8999999999777666654443
No 13
>1smp_I Erwinia chrysanthemi inhibitor; complex (metalloprotease/inhibitor); 2.30A {Erwinia chrysanthemi} SCOP: b.61.2.1
Probab=24.76 E-value=19 Score=23.59 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=26.0
Q ss_pred ccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecC
Q psy13274 31 CRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKE 68 (82)
Q Consensus 31 CrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lre 68 (82)
|-+.-+.+..+.=+ +.|||+.|++.+...+-..-|+
T Consensus 46 Cl~~~l~~~p~~W~--ptPDGi~L~~~dGs~l~ff~r~ 81 (101)
T 1smp_I 46 CLQKLLPEAPVGWR--PTPDGLTLTQADGSAVAFFSRN 81 (101)
T ss_dssp HHHHHSSSCCCEEE--ECSSEEEEECTTSCEEEEEEEE
T ss_pred HHHHHhcCCCcccc--cCCCEEEEEcCCCCEEEEeccc
Confidence 55555666666666 8999999999777777665554
No 14
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.55 E-value=78 Score=18.86 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=20.0
Q ss_pred eeeeEEeeeccCCCCCcccCCCCceEEEEecCC
Q psy13274 37 RERVITLTHCYDPDGMRLTSEKMATLDIKLKEP 69 (82)
Q Consensus 37 rer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP 69 (82)
+.+.+++. ..|++|.++.- ....+.|.+.-|
T Consensus 28 ~~~~F~V~-~~d~~G~~~~~-Gg~~~~v~i~~p 58 (113)
T 2ds4_A 28 QTASFTLL-CKDAAGEIMGR-GGDNVQVAVVPK 58 (113)
T ss_dssp CCEEEEEE-CBBTTSSBCCC-CCCCEEEEEEES
T ss_pred CcEEEEEE-EECCCCCCccc-CCceEEEEEEec
Confidence 34566666 88999988754 345566666543
No 15
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=20.34 E-value=73 Score=20.45 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=16.7
Q ss_pred ccCCCCCcccCCC-CceEEEEecC
Q psy13274 46 CYDPDGMRLTSEK-MATLDIKLKE 68 (82)
Q Consensus 46 C~d~~g~~l~g~~-~~~~~v~lre 68 (82)
=||++|..+.++. ..+..+.|..
T Consensus 58 WyD~~G~~v~~~~~~~W~~~~l~g 81 (107)
T 4gio_A 58 WLDKDGFVLRDVLNEDYQALRIPA 81 (107)
T ss_dssp EECTTSCBCCSSCCCCCEEEEECT
T ss_pred EECCCCCCcCCCCCCCCEEEEEcC
Confidence 6899999996632 4577777754
Done!