Query psy13274
Match_columns 82
No_of_seqs 37 out of 39
Neff 3.1
Searched_HMMs 13730
Date Sat Aug 17 00:36:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13274.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13274hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fzva_ g.17.1.1 (A:) Placenta 77.4 1.5 0.00011 26.9 4.1 19 58-76 80-98 (100)
2 d1fltv_ g.17.1.1 (V:) Vascular 68.0 3.1 0.00022 25.2 3.8 19 58-76 76-94 (95)
3 d1qfha2 b.1.18.10 (A:750-857) 59.0 9.1 0.00066 22.6 4.7 37 33-71 6-42 (108)
4 d1pdga_ g.17.1.1 (A:) Platelet 52.4 5 0.00036 24.3 2.7 17 60-76 77-93 (96)
5 d1xwdb1 g.17.1.4 (B:3-107) Fol 49.5 7.1 0.00052 24.5 3.1 65 1-79 21-87 (105)
6 d1hcnb_ g.17.1.4 (B:) Gonadotr 48.9 6.9 0.0005 24.7 3.0 64 2-79 29-94 (110)
7 d1wq8a_ g.17.1.1 (A:) Vascular 43.5 15 0.0011 22.1 3.9 18 59-76 78-95 (100)
8 d1ikpa3 f.1.5.1 (A:252-394) Ex 31.0 10 0.00075 25.0 1.7 12 40-52 116-127 (143)
9 d1v6ga2 g.39.1.3 (A:42-81) Act 28.9 4.3 0.00031 22.0 -0.5 10 70-79 21-30 (40)
10 d1qfha1 b.1.18.10 (A:646-749) 24.5 36 0.0026 19.0 3.2 31 38-70 24-54 (104)
11 d1smpi_ b.61.2.1 (I:) Metallop 20.7 12 0.0009 23.3 0.5 37 31-69 46-82 (100)
No 1
>d1fzva_ g.17.1.1 (A:) Placenta growth factor-1, PLGF-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.45 E-value=1.5 Score=26.90 Aligned_cols=19 Identities=11% Similarity=0.548 Sum_probs=17.1
Q ss_pred CCceEEEEecCCCCeeeee
Q psy13274 58 KMATLDIKLKEPADCKCYK 76 (82)
Q Consensus 58 ~~~~~~v~lreP~dC~C~~ 76 (82)
..+.+.|.+.+=.+|.|||
T Consensus 80 ~~~~~~v~~~~Ht~C~Crp 98 (100)
T d1fzva_ 80 RPSYVELTFSQHVRCECRP 98 (100)
T ss_dssp CCEEEEEEEEEEEEEEEEE
T ss_pred CCcEEEEEeeccCcccccC
Confidence 5678899999999999997
No 2
>d1fltv_ g.17.1.1 (V:) Vascular endothelial growth factor, VEGF {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.95 E-value=3.1 Score=25.15 Aligned_cols=19 Identities=11% Similarity=0.350 Sum_probs=16.7
Q ss_pred CCceEEEEecCCCCeeeee
Q psy13274 58 KMATLDIKLKEPADCKCYK 76 (82)
Q Consensus 58 ~~~~~~v~lreP~dC~C~~ 76 (82)
....+.|.+.+=.+|.|++
T Consensus 76 ~~~~~~vs~~~Ht~C~C~~ 94 (95)
T d1fltv_ 76 GQHIGEMSFLQHNKCECRP 94 (95)
T ss_dssp CEEEEEEEEEEEEEEEEEE
T ss_pred CCcEEEEEeeccCceecee
Confidence 5678899999999999986
No 3
>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}
Probab=59.04 E-value=9.1 Score=22.59 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=30.8
Q ss_pred ccceeeeeEEeeeccCCCCCcccCCCCceEEEEecCCCC
Q psy13274 33 ESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPAD 71 (82)
Q Consensus 33 Esglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP~d 71 (82)
.++.+.-+.++. ..|+.|..+.. ....++|.++.|..
T Consensus 6 ~~~~~~~tFtV~-a~D~~G~~~~~-G~~~~~v~i~gp~~ 42 (108)
T d1qfha2 6 DSSFGSFTFTVA-AKNKKGEVKTY-GGDKFEVSITGPAE 42 (108)
T ss_dssp GCEEEEEEEEEE-CBCTTSSBCSS-CCCCEEEEEEECCS
T ss_pred CCcCccEEEEEE-eecCCCCeecc-CCCeEEEEEECCCc
Confidence 567788888888 99999999887 68888899988864
No 4
>d1pdga_ g.17.1.1 (A:) Platelet-derived growth factor BB {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.41 E-value=5 Score=24.26 Aligned_cols=17 Identities=24% Similarity=0.601 Sum_probs=13.9
Q ss_pred ceEEEEecCCCCeeeee
Q psy13274 60 ATLDIKLKEPADCKCYK 76 (82)
Q Consensus 60 ~~~~v~lreP~dC~C~~ 76 (82)
+.+.|.+.+=.+|+|+.
T Consensus 77 ~~~~vs~~~Ht~C~C~c 93 (96)
T d1pdga_ 77 KKATVTLEDHLACKCET 93 (96)
T ss_dssp EEEEEEEEEECCEEEEE
T ss_pred eeEEEEEeccCcccceE
Confidence 34568999999999985
No 5
>d1xwdb1 g.17.1.4 (B:3-107) Follicle stimulating hormone, follitropin, beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.50 E-value=7.1 Score=24.48 Aligned_cols=65 Identities=20% Similarity=0.380 Sum_probs=43.0
Q ss_pred CceecccccccccccceeeCC--CCcceeeeeccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecCCCCeeeeecC
Q psy13274 1 IAVNKCEGACNSQVQPSVITP--NGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYKCG 78 (82)
Q Consensus 1 V~V~kCeG~C~SqVqpSv~~~--~gf~k~C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP~dC~C~~C~ 78 (82)
|+...|.|.|.++- |+...| ..+.+-| --..++-++|.|=+|+ .|-+. -++.-.-..|.|..|.
T Consensus 21 i~TTiC~G~C~t~d-pv~~~p~~~~~Q~vC---ty~~~~y~tv~LpgCp-------~gVdP---~~tYPVA~sC~C~~C~ 86 (105)
T d1xwdb1 21 INTTWCAGYCYTRD-LVYKDPARPKIQKTC---TFKELVYETVRVPGCA-------HHADS---LYTYPVATQCHCGKCD 86 (105)
T ss_dssp EEEEEEEEEEEEEC-CSSCCTTSCCCCCEE---EEEEEEEEEEEECCBT-------TBCCE---EEEEEEEEEEEEECBC
T ss_pred EEeEeECcCCCccC-ccccCcCCCcCCCcc---ccCCEEEEEEECCCcc-------CCCCC---cEEeeeccccccCCcC
Confidence 35567999999954 333322 2334544 3457888999999999 33223 3566677889999996
Q ss_pred C
Q psy13274 79 D 79 (82)
Q Consensus 79 ~ 79 (82)
.
T Consensus 87 t 87 (105)
T d1xwdb1 87 S 87 (105)
T ss_dssp T
T ss_pred C
Confidence 3
No 6
>d1hcnb_ g.17.1.4 (B:) Gonadotropin B chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.93 E-value=6.9 Score=24.72 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=41.6
Q ss_pred ceecccccccccccceeeCC--CCcceeeeeccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecCCCCeeeeecCC
Q psy13274 2 AVNKCEGACNSQVQPSVITP--NGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYKCGD 79 (82)
Q Consensus 2 ~V~kCeG~C~SqVqpSv~~~--~gf~k~C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP~dC~C~~C~~ 79 (82)
+...|.|.|.++- |.+..+ ....+- |--..++-++|.|=.|+..- +. .++.-.-..|.|.+|..
T Consensus 29 ~TTiC~G~C~T~d-pv~~~~~~~~~Q~v---Cty~~~~y~tv~LpgCp~gV-------dP---~~tYPVAlsC~C~~C~t 94 (110)
T d1hcnb_ 29 NTTICAGYCPTMT-RVLQGVLPALPQVV---CNYRDVRFESIRLPGCPRGV-------NP---VVSYAVALSCQCALCRR 94 (110)
T ss_dssp EEEEEEEEEEECC-CCBTTCSSCCCCEE---EEEEEEEEEEEECTTCCSSC-------CC---EEEEEEEEEEEEEECCT
T ss_pred EeEeEccEecccC-ccccCcCCCccCCc---cccCCeEEEEEECCCCCCCC-------CC---cEEeeeccccccCccCC
Confidence 4456999998854 322221 233444 44457888999999999333 33 25566677899999963
No 7
>d1wq8a_ g.17.1.1 (A:) Vascular endothelial growth factor, VEGF {Aspic viper (Vipera aspis aspis) [TaxId: 8706]}
Probab=43.47 E-value=15 Score=22.07 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=14.7
Q ss_pred CceEEEEecCCCCeeeee
Q psy13274 59 MATLDIKLKEPADCKCYK 76 (82)
Q Consensus 59 ~~~~~v~lreP~dC~C~~ 76 (82)
.....|.+.+=.+|.|++
T Consensus 78 ~~~~~v~~~~Ht~C~C~~ 95 (100)
T d1wq8a_ 78 SKMEVMKFTEHTACECRP 95 (100)
T ss_dssp EEEEEEEEEEEEEEEEEC
T ss_pred CeEEEEEecccCceeCCc
Confidence 455679999999999984
No 8
>d1ikpa3 f.1.5.1 (A:252-394) Exotoxin A, middle domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=31.01 E-value=10 Score=25.01 Aligned_cols=12 Identities=42% Similarity=0.683 Sum_probs=9.8
Q ss_pred eEEeeeccCCCCC
Q psy13274 40 VITLTHCYDPDGM 52 (82)
Q Consensus 40 ~V~L~~C~d~~g~ 52 (82)
.|+|| |+|++|.
T Consensus 116 i~SL~-CP~A~~~ 127 (143)
T d1ikpa3 116 VVSLT-CPVAAGE 127 (143)
T ss_dssp EEEEE-CCSSSSS
T ss_pred eeeee-ccccccc
Confidence 57888 9999964
No 9
>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.86 E-value=4.3 Score=22.01 Aligned_cols=10 Identities=40% Similarity=1.109 Sum_probs=8.0
Q ss_pred CCeeeeecCC
Q psy13274 70 ADCKCYKCGD 79 (82)
Q Consensus 70 ~dC~C~~C~~ 79 (82)
-||.||+|..
T Consensus 21 KeC~CQ~Cs~ 30 (40)
T d1v6ga2 21 KECMCQKCSL 30 (40)
T ss_dssp TEEEEHHHHS
T ss_pred ceeehhhcCC
Confidence 4899999963
No 10
>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}
Probab=24.50 E-value=36 Score=18.98 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=21.8
Q ss_pred eeeEEeeeccCCCCCcccCCCCceEEEEecCCC
Q psy13274 38 ERVITLTHCYDPDGMRLTSEKMATLDIKLKEPA 70 (82)
Q Consensus 38 er~V~L~~C~d~~g~~l~g~~~~~~~v~lreP~ 70 (82)
...++++ ..|+.|..+.. ....+++.+.-|.
T Consensus 24 ~~~F~V~-~~d~~G~~~~~-Gg~~~~v~v~~p~ 54 (104)
T d1qfha1 24 PAEFTIF-AVDTKGVARTD-GGDPFEVAINGPD 54 (104)
T ss_dssp CEEEEEE-CBBSSSCBCSS-CCCCEEEEEECGG
T ss_pred cEEEEEE-EecCCCCEecc-CCceeEEEEECCC
Confidence 4566776 88998887765 4566677777664
No 11
>d1smpi_ b.61.2.1 (I:) Metalloprotease inhibitor {Erwinia chrysanthemi [TaxId: 556]}
Probab=20.66 E-value=12 Score=23.27 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=28.7
Q ss_pred ccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecCC
Q psy13274 31 CRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEP 69 (82)
Q Consensus 31 CrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP 69 (82)
|-+.-|-|..|.-+ |.|||+-|++.+...+...-|+.
T Consensus 46 Cl~~wLg~~p~gW~--PtPDGiaLt~~~Gs~i~ffsR~~ 82 (100)
T d1smpi_ 46 CLQKLLPEAPVGWR--PTPDGLTLTQADGSAVAFFSRNR 82 (100)
T ss_dssp HHHHHSSSCCCEEE--ECSSEEEEECTTSCEEEEEEEET
T ss_pred HHHHHhccCCcccc--cCCCeEEEecCCCCeEEeeeecC
Confidence 66677788888888 89999999997777666655543
Done!