RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13274
(82 letters)
>gnl|CDD|223420 COG0343, Tgt, Queuine/archaeosine tRNA-ribosyltransferase
[Translation, ribosomal structure and biogenesis].
Length = 372
Score = 28.0 bits (63), Expect = 0.47
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 45 HCYDPDG-MRLTSEKMATLDIKLKEPADCKCYKCGDYSR 82
DG + + + K+A L EP C C C +YSR
Sbjct: 273 RLLTRDGRVNIRNAKLAEDTRPLDEP--CSCPTCRNYSR 309
>gnl|CDD|234897 PRK01096, PRK01096, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 440
Score = 27.6 bits (62), Expect = 0.55
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 39 RVITLTHCYDPD--GMRLTSEKMATLDIKLKEP 69
RV+T Y D GMRLT ATL +K P
Sbjct: 159 RVLTKLE-YHQDDGGMRLTY---ATLGTYIKYP 187
>gnl|CDD|178930 PRK00211, PRK00211, sulfur relay protein TusC; Validated.
Length = 119
Score = 26.4 bits (59), Expect = 1.2
Identities = 8/14 (57%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Query: 26 KECYCCRESYLRER 39
++CY C S LRER
Sbjct: 74 EQCYLCAAS-LRER 86
>gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional.
Length = 394
Score = 26.6 bits (59), Expect = 1.3
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 36 LRERVITLTHCYDPDGMRLTSEKMATLDIKLKE 68
LRE + C PD + L + TL ++L +
Sbjct: 230 LREHSYLMGQCTSPDDVYLAMRGLRTLGVRLAQ 262
>gnl|CDD|234642 PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.
Length = 366
Score = 26.2 bits (59), Expect = 1.7
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 71 DCKCYKCGDYSR 82
+C CY C +YSR
Sbjct: 303 ECDCYTCRNYSR 314
>gnl|CDD|239226 cd02896, complement_C3_C4_C5, Proteins similar to C3, C4 and C5 of
vertebrate complement. The vertebrate complement
system, comprised of a large number of distinct plasma
proteins, is an effector of both the acquired and innate
immune systems. The point of convergence of the
classical, alternative and lectin pathways of the
complement system is the proteolytic activation of C3.
C4 plays a key role in propagating the classical and
lectin pathways. C5 participates in the classical and
alternative pathways. The thioester bond located within
the structure of C3 and C4 is central to the function of
complement. C5 does not contain an active thioester
bond.
Length = 297
Score = 26.1 bits (58), Expect = 2.2
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 34 SYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCK 73
SYL ++ L Y + +T+ +A D L A+ K
Sbjct: 177 SYLENQLPNLQRPY---ALAITAYALALADSPLSHAANRK 213
>gnl|CDD|226226 COG3703, ChaC, Uncharacterized protein involved in cation transport
[Inorganic ion transport and metabolism].
Length = 190
Score = 25.4 bits (56), Expect = 3.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 34 SYLRERVITLTHCYDP 49
YLRER + T Y P
Sbjct: 86 EYLREREMNYTLVYVP 101
>gnl|CDD|214482 smart00041, CT, C-terminal cystine knot-like domain (CTCK). The
structures of transforming growth factor-beta
(TGFbeta), nerve growth factor (NGF), platelet-derived
growth factor (PDGF) and gonadotropin all form 2 highly
twisted antiparallel pairs of beta-strands and contain
three disulphide bonds. The domain is non-globular and
little is conserved among these presumed homologues
except for their cysteine residues. CT domains are
predicted to form homodimers.
Length = 82
Score = 25.1 bits (55), Expect = 3.1
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 14/74 (18%)
Query: 1 IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMA 60
+ CEG C S S+ C CC+ + R + L C PDG + M
Sbjct: 18 VKNAFCEGKCGSASSYSIQDVQHS---CSCCQPHKTKTRQVRL-RC--PDGSTVKKTVM- 70
Query: 61 TLDIKLKEPADCKC 74
+C C
Sbjct: 71 -------HIEECGC 77
>gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase,
SPINDLY family [Posttranslational modification, protein
turnover, chaperones].
Length = 620
Score = 25.5 bits (56), Expect = 3.3
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 33 ESYLRERVITLTHCYDP-DGMR 53
E Y E++ L CY P DG
Sbjct: 392 EEYYSEKLWRLPQCYQPVDGFE 413
>gnl|CDD|238701 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4)
which includes human sirtuin SIRT6, SIRT7, and several
bacterial homologs; and are members of the SIR2 family
of proteins, silent information regulator 2 (Sir2)
enzymes which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 206
Score = 25.3 bits (56), Expect = 3.6
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 22 NGFLKECYCCRESYLRERVITLTHCYDPD 50
N F++ C C Y+R+ V+ +
Sbjct: 92 NMFIEVCKSCGPEYVRDDVVETRGDKETG 120
>gnl|CDD|152706 pfam12271, Chs3p, Chitin synthase III catalytic subunit. This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 288 and 332 amino
acids in length. This family is the catalytic domain of
chitin synthase III. Chitin is a major component of
fungal cell walls and this enzyme is responsible for
its formation.
Length = 291
Score = 25.3 bits (56), Expect = 4.2
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 6 CEGA----CNSQVQPSVITPNGFLKECY 29
C A C+ S P G L CY
Sbjct: 10 CRKAALPLCSLVGADSNSGPRGILPGCY 37
>gnl|CDD|217127 pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase. This
family of proteins are predicted to be SPOUT
methyltransferases.
Length = 154
Score = 24.9 bits (55), Expect = 4.5
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 37 RERVITLTHCYDPDGMRLTSEKMA 60
VI L D G L+SE+ A
Sbjct: 66 GSYVIAL----DERGKELSSEEFA 85
>gnl|CDD|129541 TIGR00449, tgt_general, tRNA-guanine family transglycosylase.
Different tRNA-guanine transglycosylases catalyze
different tRNA base modifications. Two guanine base
substitutions by different enzymes described by the
model are involved in generating queuosine at position
34 in bacterial tRNAs and archaeosine at position 15 in
archaeal tRNAs. This model is designed for fragment
searching, so the superfamily is used loosely [Protein
synthesis, tRNA and rRNA base modification].
Length = 367
Score = 25.1 bits (55), Expect = 4.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 72 CKCYKCGDYSR 82
C CY C +YSR
Sbjct: 299 CDCYVCKNYSR 309
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.447
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,831,398
Number of extensions: 284348
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 15
Length of query: 82
Length of database: 10,937,602
Length adjustment: 51
Effective length of query: 31
Effective length of database: 8,675,548
Effective search space: 268941988
Effective search space used: 268941988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)