RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13274
         (82 letters)



>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel,
           riken structural genomics/proteomics initiative, RSGI;
           2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1
           d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
          Length = 582

 Score = 32.4 bits (74), Expect = 0.008
 Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 2/33 (6%)

Query: 50  DGMRLTSEKMATLDIKLKEPADCKCYKCGDYSR 82
           D   +T E   T  +   +   C C  C  Y+ 
Sbjct: 259 DDRYMTPE--GTKRLDELDYFPCSCPVCSKYTP 289


>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc
           genomics, joint center for structural genomics, JCSG;
           1.90A {Thermotoga maritima}
          Length = 381

 Score = 25.9 bits (58), Expect = 1.2
 Identities = 5/12 (41%), Positives = 8/12 (66%)

Query: 71  DCKCYKCGDYSR 82
            C CY C +++R
Sbjct: 310 RCGCYTCKNFTR 321


>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase,
           metal-binding, queuosine biosynthesis, tRNA processing;
           HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A*
           1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A*
           1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A*
           1q65_A* 1q66_A* 1k4g_A* 1s38_A* ...
          Length = 386

 Score = 25.9 bits (58), Expect = 1.3
 Identities = 5/12 (41%), Positives = 7/12 (58%)

Query: 71  DCKCYKCGDYSR 82
           +C C  C  +SR
Sbjct: 317 ECHCAVCQKWSR 328


>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target
           10395N, triphosphohydro PSI-2, protein structure
           initiative; 1.95A {Leeuwenhoekiella blandensis}
          Length = 444

 Score = 25.8 bits (57), Expect = 1.4
 Identities = 4/24 (16%), Positives = 11/24 (45%)

Query: 39  RVITLTHCYDPDGMRLTSEKMATL 62
           +V++ +      G+RL+   +   
Sbjct: 166 KVLSQSKPGAQGGLRLSYATLGAF 189


>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein
           structure initiative, NE SGX research center for
           structural genomics; HET: XAN; 1.64A {Yersinia
           pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A*
          Length = 287

 Score = 25.2 bits (56), Expect = 2.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 38  ERVITLTHCYDPDGMRLTSEKMATLDIKLKE 68
            R  +L + YD D     ++    LDI L E
Sbjct: 163 PRFFSLANAYDKDLRADMAKIAQQLDIPLTE 193


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.4 bits (55), Expect = 2.6
 Identities = 5/34 (14%), Positives = 10/34 (29%)

Query: 35   YLRERVITLTHCYDPDGMRLTSEKMATLDIKLKE 68
             +RE    +      DG   T +    ++     
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716


>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA,
           glycosyltransferase, transferase; 1.80A {Streptococcus
           mutans} PDB: 3lba_A*
          Length = 303

 Score = 24.5 bits (54), Expect = 4.9
 Identities = 7/31 (22%), Positives = 13/31 (41%)

Query: 38  ERVITLTHCYDPDGMRLTSEKMATLDIKLKE 68
            R   +++ Y  D   +  +    + IKL E
Sbjct: 183 FRFPDMSNAYTADYREVAHQVADKIGIKLDE 213


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.137    0.447 

Gapped
Lambda     K      H
   0.267   0.0782    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,266,776
Number of extensions: 64295
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 9
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)