RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13274
         (82 letters)



>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase
           {Zymomonas mobilis [TaxId: 542]}
          Length = 372

 Score = 24.0 bits (51), Expect = 3.0
 Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 44  THCYDPDGMRLTSEKMATLDIKLKEPADCKCYKCGDYSR 82
              +  DG         + D+K  +  +C C  C  +SR
Sbjct: 281 GQAFTWDGPINIRNARFSEDLKPLDS-ECHCAVCQKWSR 318


>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 113

 Score = 22.7 bits (47), Expect = 6.0
 Identities = 5/68 (7%), Positives = 15/68 (22%), Gaps = 4/68 (5%)

Query: 10 CNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEP 69
             + +  +  P     +      +    +             R +      + I   + 
Sbjct: 22 AKVKAEDLLRKPTIKWFKGKWMDLASKAGKH----LQLKETFERHSRVYTFEMQIIKAKD 77

Query: 70 ADCKCYKC 77
               Y+C
Sbjct: 78 NFAGNYRC 85


>d1qwda_ b.60.1.1 (A:) Outer membrane lipoprotein Blc {Escherichia
          coli [TaxId: 562]}
          Length = 167

 Score = 22.8 bits (48), Expect = 6.6
 Identities = 5/35 (14%), Positives = 11/35 (31%), Gaps = 3/35 (8%)

Query: 20 TPNGFLKECYCCRESYLRER---VITLTHCYDPDG 51
            + F +       +Y       +  +   Y+PD 
Sbjct: 40 FDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDR 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.447 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 332,956
Number of extensions: 14230
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 6
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)