Query psy13278
Match_columns 174
No_of_seqs 137 out of 236
Neff 5.3
Searched_HMMs 29240
Date Sat Aug 17 00:41:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f6h_X Myosin-2, type V myosin 100.0 2.1E-43 7.1E-48 316.3 9.8 167 3-174 214-410 (419)
2 3mmi_A Myosin-4; globular tail 100.0 1.3E-35 4.4E-40 264.1 7.9 140 3-144 198-353 (386)
3 1fs1_B SKP1, cyclin A/CDK2-ass 63.1 6.2 0.00021 29.4 3.4 36 66-101 98-134 (141)
4 2ast_A S-phase kinase-associat 60.2 7.9 0.00027 29.2 3.6 37 66-102 103-140 (159)
5 3mmi_A Myosin-4; globular tail 54.0 4.2 0.00014 36.0 1.2 40 16-59 271-311 (386)
6 3zed_D Capsid protein VP3; vir 43.8 67 0.0023 26.5 6.8 87 41-129 86-187 (242)
7 2f6h_X Myosin-2, type V myosin 40.5 5.2 0.00018 35.3 -0.4 34 16-49 288-322 (419)
8 2p1m_A SKP1-like protein 1A; F 36.5 21 0.00071 27.0 2.6 37 66-102 102-139 (160)
9 1j2m_A CPI-17, 17-kDa PKC-pote 33.2 33 0.0011 24.9 3.0 60 54-126 30-95 (99)
10 2c35_A Human RPB4, DNA-directe 33.0 52 0.0018 25.0 4.3 49 52-100 90-141 (152)
11 2di0_A Activating signal coint 30.4 54 0.0018 22.2 3.6 27 78-104 14-40 (71)
12 2dkz_A Hypothetical protein LO 27.6 94 0.0032 21.8 4.5 61 39-105 7-81 (84)
13 1jw2_A Hemolysin expression mo 26.8 47 0.0016 22.7 2.7 52 70-121 11-71 (72)
14 1wgl_A TOLL-interacting protei 26.3 72 0.0025 20.5 3.5 28 77-104 9-36 (59)
15 1otr_A Protein CUE2; protein-p 25.0 83 0.0028 19.6 3.5 27 78-104 5-31 (49)
16 3v7d_A Suppressor of kinetocho 24.8 79 0.0027 24.0 4.1 36 66-101 110-146 (169)
17 1jjr_A KU70, thyroid autoantig 24.1 33 0.0011 26.4 1.8 55 50-104 64-131 (151)
18 2r18_A Capsid assembly protein 23.3 84 0.0029 23.9 3.8 79 56-135 36-123 (139)
19 1mjt_A Nitric-oxide synthase h 22.5 40 0.0014 29.4 2.1 33 2-34 70-103 (347)
20 2kng_A Protein LSR2; DNA-bindi 22.3 37 0.0013 22.1 1.4 14 51-64 14-27 (55)
21 1m7v_A Nitric oxide synthase; 22.2 41 0.0014 29.5 2.2 33 2-34 73-106 (363)
22 2ort_A Nitric oxide synthase, 21.1 45 0.0015 29.6 2.2 33 2-34 88-121 (389)
23 3n5w_A Nitric oxide synthase; 20.9 45 0.0015 29.8 2.2 33 2-34 126-159 (422)
24 3e7m_A Nitric oxide synthase, 20.2 48 0.0016 29.8 2.2 33 2-34 136-169 (433)
No 1
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-43 Score=316.33 Aligned_cols=167 Identities=21% Similarity=0.333 Sum_probs=150.1
Q ss_pred cchhccchhhhhH--HHHHHHHHHHHh--hhhhHHhhhccccccccccccccchhHHHHHHhhcCc--------h-Hhhh
Q psy13278 3 TSQVRDLNRIKSV--HKVASQLLQARK--TQEDVNTVCEMCNKMSTNQVRAVSTSQVRDLNRIKSV--------H-KVAS 69 (174)
Q Consensus 3 ~~~~~~~~~~~~v--~q~fsQLf~~i~--~fNdl~s~~~lCs~~~G~QIr~~Nls~LEeW~~~~~l--------h-iQa~ 69 (174)
++.++..|.+++. .|+|+|||+||+ +||+++.|+++|+|.+|+|||+ |+++||+||+++|+ | +||+
T Consensus 214 ~~~~L~~~~V~~~l~~Q~fsQlf~~In~~lFN~LL~r~~~cs~s~G~qIr~-nls~Le~W~~~~~l~~a~~~L~~l~Qa~ 292 (419)
T 2f6h_X 214 IYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELIMKRNFLSWKRGLQLNY-NVTRLEEWCKTHGLTDGTECLQHLIQTA 292 (419)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHH-HHHHHHHHHHHTTCTTHHHHTHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhHHHHHh-hHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 3456777888876 899999999996 8999999999999999999999 99999999999999 2 9999
Q ss_pred hhhcccC-ChhHHHHHHHHhccCCHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHhhCCCCcc------------cch
Q psy13278 70 QLLQARK-TQEDVNTVCEMCNKMSTNQIIKLLNLYTPADDYEERISQSFIHLIQEKLKERPQSEQ------------STL 136 (174)
Q Consensus 70 ~LLQ~~K-t~~D~~~i~~~C~~L~~~Qi~klL~~Y~P~~~~E~~ip~~~i~~v~~~~~~r~~~~~------------~~l 136 (174)
+|||++| +.+|+++++++|++||++||+||+++|+| ++||++||++++++|+++++++++..+ ..+
T Consensus 293 ~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~il~~Y~~-d~~e~~v~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (419)
T 2f6h_X 293 KLLQVRKYTIEDIDILRGICYSLTPAQLQKLISQYQV-ADYESPIPQEILRYVADIVKKEAALSSSGNDSKGHEHSSSIF 371 (419)
T ss_dssp HHTTSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHCCC-CTTSCCCCHHHHHHHHHHHHHHHHGGGCC----------CCS
T ss_pred HHHhhCCCchhhHHHHHHHhhcCCHHHHHHHHHhCCC-ccCCCCCCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 9999998 99999999999999999999999999997 899999999999999999997665310 345
Q ss_pred hc--ccCcccccccccCCCcccccccc--cCCCCCCCccccC
Q psy13278 137 LM--DTKFNFSVRFPFSASNIQLEHIE--IPDVLQVPMLKKI 174 (174)
Q Consensus 137 ~~--D~~~~~p~~~pf~ps~~~le~~~--iP~~l~l~~l~ri 174 (174)
++ |++|.+|+++|+.| .+++++ ||+||++|+|+||
T Consensus 372 ll~~d~~~~~Pf~~p~~~---~~~~i~~~iP~~l~l~~l~~i 410 (419)
T 2f6h_X 372 ITPETGPFTDPFSLIKTR---KFDQVEAYIPAWLSLPSTKRI 410 (419)
T ss_dssp CCCCCCCCCCGGGGSCCC---CCCCCCCCCCTTCCCHHHHHH
T ss_pred cccCCcccCCCcCCCCcC---cHHHHHhhCCCccccHHHHHH
Confidence 65 89999999999999 555555 9999999999985
No 2
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=264.09 Aligned_cols=140 Identities=15% Similarity=0.199 Sum_probs=120.6
Q ss_pred cchhccchhhhhH--HHHHHHHHHHHh--hhhhHHhhhccccccccccccccchhHHHHHHhhcCc--------h-Hhhh
Q psy13278 3 TSQVRDLNRIKSV--HKVASQLLQARK--TQEDVNTVCEMCNKMSTNQVRAVSTSQVRDLNRIKSV--------H-KVAS 69 (174)
Q Consensus 3 ~~~~~~~~~~~~v--~q~fsQLf~~i~--~fNdl~s~~~lCs~~~G~QIr~~Nls~LEeW~~~~~l--------h-iQa~ 69 (174)
++.++..|.+++. .|+|+|||+||+ +||+++.|+++|+|.+|+||++ |+++||+||++ |+ | +||+
T Consensus 198 ~~~~L~~~~V~p~li~QlfsQLF~fIna~lFN~LLlRr~~cs~s~G~qIr~-NLs~LEeW~~~-~l~~a~~~L~~L~QA~ 275 (386)
T 3mmi_A 198 FDAVLCKFQVVDSMHTKIFNDTLKYLNVMLFNDLITKCPALNWKYGYEVDR-NIERLVSWFEP-RIEDVRPNLIQIIQAV 275 (386)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHHH-HHHHHHHHHTT-TSSCCGGGGHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHccCcccCcchHHHHHh-hHHHHHHHHHh-ccHHHHHHHHHHHHHH
Confidence 4567778888887 999999999996 8999999999999999999999 99999999999 88 2 9999
Q ss_pred hhhcccC-ChhHHHHHHHHhccCCHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHhhCCCCc--ccchhcccCccc
Q psy13278 70 QLLQARK-TQEDVNTVCEMCNKMSTNQIIKLLNLYTPADDYEERISQSFIHLIQEKLKERPQSE--QSTLLMDTKFNF 144 (174)
Q Consensus 70 ~LLQ~~K-t~~D~~~i~~~C~~L~~~Qi~klL~~Y~P~~~~E~~ip~~~i~~v~~~~~~r~~~~--~~~l~~D~~~~~ 144 (174)
+|||++| +.+|+++++++|++|||+||+|||++|+|.+++|+|||++|+++|+++++++++.+ ..+++.++.|..
T Consensus 276 ~LLQ~~K~t~~Di~~i~~~C~~Lsp~QL~kIL~~Y~p~~~~E~~V~~e~i~~v~~~lk~~~~~~~~~~~i~~~~~~~~ 353 (386)
T 3mmi_A 276 KILQLKISNLNEFKLLFDFWYALNPAQIQAILLKYKPANKGEAGVPNEILNYLANVIKRENLSLPGKMEIMLSAQFDS 353 (386)
T ss_dssp HHHHCCCCCHHHHHHHHTTCCSSCHHHHHHHHHTBCCC-----CCCHHHHHHHHHHHHHHHHHCSSCCCSSCCCCCCC
T ss_pred HHHccCCCCHHHHHHHHHhcccCCHHHHHHHHHhCcCCCCCCCCCCHHHHHHHHHHHhcccccCCcchhhhhcccchH
Confidence 9999998 99999999999999999999999999998544599999999999999999876432 334667766554
No 3
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=63.11 E-value=6.2 Score=29.36 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=23.1
Q ss_pred HhhhhhhcccC-ChhHHHHHHHHhccCCHHHHHHHHH
Q psy13278 66 KVASQLLQARK-TQEDVNTVCEMCNKMSTNQIIKLLN 101 (174)
Q Consensus 66 iQa~~LLQ~~K-t~~D~~~i~~~C~~L~~~Qi~klL~ 101 (174)
+.||..|+++. -.---..+.++-..-||.||+++++
T Consensus 98 i~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~ 134 (141)
T 1fs1_B 98 ILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 134 (141)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 78888888765 2222344445555668888887764
No 4
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=60.16 E-value=7.9 Score=29.20 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=26.7
Q ss_pred HhhhhhhcccC-ChhHHHHHHHHhccCCHHHHHHHHHh
Q psy13278 66 KVASQLLQARK-TQEDVNTVCEMCNKMSTNQIIKLLNL 102 (174)
Q Consensus 66 iQa~~LLQ~~K-t~~D~~~i~~~C~~L~~~Qi~klL~~ 102 (174)
+.||..||++. -.---..+.++-..-||.+|+++++-
T Consensus 103 l~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I 140 (159)
T 2ast_A 103 ILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNI 140 (159)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCC
Confidence 89999999876 22224445566667799999999864
No 5
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=53.96 E-value=4.2 Score=36.01 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHh-hhhhHHhhhccccccccccccccchhHHHHHH
Q psy13278 16 HKVASQLLQARK-TQEDVNTVCEMCNKMSTNQVRAVSTSQVRDLN 59 (174)
Q Consensus 16 ~q~fsQLf~~i~-~fNdl~s~~~lCs~~~G~QIr~~Nls~LEeW~ 59 (174)
..++++||+..| +.+|+.+.+++|..++..||.+ -+..|-
T Consensus 271 L~QA~~LLQ~~K~t~~Di~~i~~~C~~Lsp~QL~k----IL~~Y~ 311 (386)
T 3mmi_A 271 IIQAVKILQLKISNLNEFKLLFDFWYALNPAQIQA----ILLKYK 311 (386)
T ss_dssp HHHHHHHHHCCCCCHHHHHHHHTTCCSSCHHHHHH----HHHTBC
T ss_pred HHHHHHHHccCCCCHHHHHHHHHhcccCCHHHHHH----HHHhCc
Confidence 567888998775 8899999999999999999988 455443
No 6
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=43.82 E-value=67 Score=26.48 Aligned_cols=87 Identities=10% Similarity=0.083 Sum_probs=55.0
Q ss_pred ccccccccccchhHH------HHHHhhcCch----HhhhhhhcccC----ChhHHHHHHHHhccC-CHHHHHHHHHhcCC
Q psy13278 41 KMSTNQVRAVSTSQV------RDLNRIKSVH----KVASQLLQARK----TQEDVNTVCEMCNKM-STNQIIKLLNLYTP 105 (174)
Q Consensus 41 ~~~G~QIr~~Nls~L------EeW~~~~~lh----iQa~~LLQ~~K----t~~D~~~i~~~C~~L-~~~Qi~klL~~Y~P 105 (174)
|.++.+|.. |.-.- -||...+|.. -|+-.+.-.+- ..+-++-+..--.+. .+.+|.+|++.-.
T Consensus 86 ~~KAvRIS~-d~~~~g~dfaTpEWV~~NGyRGPsp~Q~KYy~itg~~P~Pge~y~dyv~~~~~~p~~~~kirRla~svy- 163 (242)
T 3zed_D 86 EAKATRISL-DAVKAGADFASPEWIAENNYRGPSPGQFKYYMITGRVPNPGEEYEDYVRKPITRPTDMDKIRRLANSVY- 163 (242)
T ss_pred HHHHHHHHH-HHHHhccccCChHHHHhcCCCCCCHHHhhHHHhcccCCCCCccHHHhhccccCCCCCHHHHHHHHHHHh-
Confidence 444555555 44321 3899998882 44433333222 222244444334566 7889999997655
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCC
Q psy13278 106 ADDYEERISQSFIHLIQEKLKERP 129 (174)
Q Consensus 106 ~~~~E~~ip~~~i~~v~~~~~~r~ 129 (174)
-...-++-|.+|++.|++...+.+
T Consensus 164 g~p~Q~papeef~~ava~v~~en~ 187 (242)
T 3zed_D 164 GLPHQEPAPDDFYQAVVEVFAENG 187 (242)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHhC
Confidence 378888999999999999887654
No 7
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=40.50 E-value=5.2 Score=35.29 Aligned_cols=34 Identities=29% Similarity=0.503 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHh-hhhhHHhhhccccccccccccc
Q psy13278 16 HKVASQLLQARK-TQEDVNTVCEMCNKMSTNQVRA 49 (174)
Q Consensus 16 ~q~fsQLf~~i~-~fNdl~s~~~lCs~~~G~QIr~ 49 (174)
+.+++|+|+..+ +.+|+..++++|..++..||.+
T Consensus 288 l~Qa~~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~ 322 (419)
T 2f6h_X 288 LIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQK 322 (419)
T ss_dssp HHHHHHHTTSCCSSHHHHHHHHHHTTTSCHHHHHH
T ss_pred HHHHHHHHhhCCCchhhHHHHHHHhhcCCHHHHHH
Confidence 346777777554 7899999999999999999998
No 8
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=36.53 E-value=21 Score=26.95 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=25.4
Q ss_pred HhhhhhhcccC-ChhHHHHHHHHhccCCHHHHHHHHHh
Q psy13278 66 KVASQLLQARK-TQEDVNTVCEMCNKMSTNQIIKLLNL 102 (174)
Q Consensus 66 iQa~~LLQ~~K-t~~D~~~i~~~C~~L~~~Qi~klL~~ 102 (174)
+.||..|+++. -.---..+.++-.--||.+|+++++-
T Consensus 102 i~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I 139 (160)
T 2p1m_A 102 ILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNI 139 (160)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCC
Confidence 88999999875 22223444455555699999998864
No 9
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=33.17 E-value=33 Score=24.86 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=42.1
Q ss_pred HHHHHHhhcCchHhhhhhhcccC--C--hhHHHHHHHHhccCC-HHHHHHHH-HhcCCCCCCCCCCCHHHHHHHHHHHh
Q psy13278 54 QVRDLNRIKSVHKVASQLLQARK--T--QEDVNTVCEMCNKMS-TNQIIKLL-NLYTPADDYEERISQSFIHLIQEKLK 126 (174)
Q Consensus 54 ~LEeW~~~~~lhiQa~~LLQ~~K--t--~~D~~~i~~~C~~L~-~~Qi~klL-~~Y~P~~~~E~~ip~~~i~~v~~~~~ 126 (174)
.+|+|.-. |...|-++.. - .=|++.+.++=+.-- ...++.+| ..|.|. .+||+-+-.+++
T Consensus 30 ~~E~WI~~-----qL~eLy~~~e~e~p~eIDiDeLLDl~sdeeR~~~LqelL~~C~~pt--------E~FI~eLL~rlk 95 (99)
T 1j2m_A 30 DVEKWIDG-----RLEELYRGREADMPDEVNIDELLELESEEERSRKIQGLLKSCTNPT--------ENFVQELLVKLR 95 (99)
T ss_dssp HHHHHHHH-----HHHHSCTTSSCSCCSSCCSHHHHCCTTTTHHHHHHHHHHHTTSCCC--------HHHHHHHHHHTT
T ss_pred hHHHHHHH-----HHHHHhcCccccCCcccCHHHHhcCCcHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHH
Confidence 68999999 8999999866 2 346888887744333 34677788 667762 277777766664
No 10
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=33.04 E-value=52 Score=25.00 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=30.7
Q ss_pred hhHHHHHHhhcCch-HhhhhhhcccC-ChhHHHHHHHHhc-cCCHHHHHHHH
Q psy13278 52 TSQVRDLNRIKSVH-KVASQLLQARK-TQEDVNTVCEMCN-KMSTNQIIKLL 100 (174)
Q Consensus 52 ls~LEeW~~~~~lh-iQa~~LLQ~~K-t~~D~~~i~~~C~-~L~~~Qi~klL 100 (174)
+..+.+=+..+++| .++++|.=++- |.+++..|...+. +++..+|.+||
T Consensus 90 ~~~l~e~L~~~~L~~~E~a~L~NL~P~t~dEar~lipsl~~r~sdEeLe~IL 141 (152)
T 2c35_A 90 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQIL 141 (152)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHCCSSHHHHHHHCGGGTTTSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHhccCCCCCHHHHHHHHHhhccCCCHHHHHHHH
Confidence 33444445566775 66666666644 7777777776553 67777777666
No 11
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=30.42 E-value=54 Score=22.24 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=24.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHhcC
Q psy13278 78 QEDVNTVCEMCNKMSTNQIIKLLNLYT 104 (174)
Q Consensus 78 ~~D~~~i~~~C~~L~~~Qi~klL~~Y~ 104 (174)
.+.+..|.++-+.|..-+|.++|..|-
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~ 40 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYH 40 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhC
Confidence 467889999999999999999999997
No 12
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.58 E-value=94 Score=21.76 Aligned_cols=61 Identities=18% Similarity=0.149 Sum_probs=42.5
Q ss_pred ccccccccccccchhHHHHHHhhcCch-----------HhhhhhhcccCChhHHHHHHHHhccCCHHHHHHHHH---hcC
Q psy13278 39 CNKMSTNQVRAVSTSQVRDLNRIKSVH-----------KVASQLLQARKTQEDVNTVCEMCNKMSTNQIIKLLN---LYT 104 (174)
Q Consensus 39 Cs~~~G~QIr~~Nls~LEeW~~~~~lh-----------iQa~~LLQ~~Kt~~D~~~i~~~C~~L~~~Qi~klL~---~Y~ 104 (174)
-.|....-++-+++..+-+|.|.-|+. +--.-|+|+.+ +.+.+- +.||+.|..||++ -++
T Consensus 7 ~~w~pP~dLs~lSv~EVs~~Lr~igL~e~vv~~F~~e~IDG~lL~~L~e-----e~L~ed-f~ls~Lq~kKi~~fI~GWr 80 (84)
T 2dkz_A 7 GPWQPPADLSGLSIEEVSKSLRFIGLSEDVISFFVTEKIDGNLLVQLTE-----EILSED-FKLSKLQVKKIMQFINGSG 80 (84)
T ss_dssp CCCCCCSCCSSCCHHHHHHHGGGTCCCHHHHHHHHTTTCCHHHHHHCCH-----HHHHHT-SCCCHHHHHHHHHHHHCCC
T ss_pred CCCCCchhhhhcCHHHHHHHHHHcCCcHHHHHHHHHHccchHHHHhCCH-----HHHHhh-cCCCHHHHHHHHHHHhcCC
Confidence 467777778888999999999998882 22234666654 223232 7889999999984 455
Q ss_pred C
Q psy13278 105 P 105 (174)
Q Consensus 105 P 105 (174)
|
T Consensus 81 P 81 (84)
T 2dkz_A 81 P 81 (84)
T ss_dssp T
T ss_pred C
Confidence 5
No 13
>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} SCOP: a.23.5.1 PDB: 2jvp_A 2k5s_A
Probab=26.81 E-value=47 Score=22.72 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=34.4
Q ss_pred hhhcccC--ChhHHHHHH-HHhccCCHHHHHHHHHhcCC------CCCCCCCCCHHHHHHH
Q psy13278 70 QLLQARK--TQEDVNTVC-EMCNKMSTNQIIKLLNLYTP------ADDYEERISQSFIHLI 121 (174)
Q Consensus 70 ~LLQ~~K--t~~D~~~i~-~~C~~L~~~Qi~klL~~Y~P------~~~~E~~ip~~~i~~v 121 (174)
.|||.|| +.+.++.+. -.+++|++..+......+-- ..-.=.+||+++-++|
T Consensus 11 ~L~k~Rrc~s~eTLEkv~e~~~y~Lt~~el~~f~~AaDHR~AEL~~~klyDkvP~sVW~~V 71 (72)
T 1jw2_A 11 YLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFI 71 (72)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHSSSCCSCCCHHHHHHC
T ss_pred HHHHHHhcCcHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCchHhhCCHHHhHhc
Confidence 4778999 788899888 58999999877654432110 0111228888877664
No 14
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.34 E-value=72 Score=20.52 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=25.9
Q ss_pred ChhHHHHHHHHhccCCHHHHHHHHHhcC
Q psy13278 77 TQEDVNTVCEMCNKMSTNQIIKLLNLYT 104 (174)
Q Consensus 77 t~~D~~~i~~~C~~L~~~Qi~klL~~Y~ 104 (174)
+.++++.+.++.+.+...+|.++|....
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~ 36 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQR 36 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 6789999999999999999999998766
No 15
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=25.00 E-value=83 Score=19.62 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=24.2
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHhcC
Q psy13278 78 QEDVNTVCEMCNKMSTNQIIKLLNLYT 104 (174)
Q Consensus 78 ~~D~~~i~~~C~~L~~~Qi~klL~~Y~ 104 (174)
.+++..|.+|.+.++..+|++.|..-.
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~ 31 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENN 31 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 477899999999999999999998865
No 16
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=24.81 E-value=79 Score=24.04 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=22.8
Q ss_pred HhhhhhhcccC-ChhHHHHHHHHhccCCHHHHHHHHH
Q psy13278 66 KVASQLLQARK-TQEDVNTVCEMCNKMSTNQIIKLLN 101 (174)
Q Consensus 66 iQa~~LLQ~~K-t~~D~~~i~~~C~~L~~~Qi~klL~ 101 (174)
+.||.-|+++. -.---..+.++--.-||.+|+++++
T Consensus 110 i~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~ 146 (169)
T 3v7d_A 110 ILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFN 146 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 77888888765 1112344445555668888888775
No 17
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=24.11 E-value=33 Score=26.44 Aligned_cols=55 Identities=11% Similarity=0.230 Sum_probs=16.1
Q ss_pred cchhHHHHHHhhcCch---------Hhhhhhhccc-C-ChhHHHHHH--HHhccCCHHHHHHHHHhcC
Q psy13278 50 VSTSQVRDLNRIKSVH---------KVASQLLQAR-K-TQEDVNTVC--EMCNKMSTNQIIKLLNLYT 104 (174)
Q Consensus 50 ~Nls~LEeW~~~~~lh---------iQa~~LLQ~~-K-t~~D~~~i~--~~C~~L~~~Qi~klL~~Y~ 104 (174)
..+.+|.+||+.+|+. -....+|.-. + +.+++.... ..-.+|+..|++.+|..+-
T Consensus 64 ltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~Kve~s~eei~~~~~~g~l~klTV~~Lk~~l~~~g 131 (151)
T 1jjr_A 64 FTVPMLKEACRAYGLKSGLKKQELLEALTKHFQDKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYG 131 (151)
T ss_dssp SCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC----------------------------------
T ss_pred ccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhhccccHHHHHHHHhcCccccccHHHHHHHHHHcC
Confidence 3899999999999991 1111223222 2 444554443 2446788888888888775
No 18
>2r18_A Capsid assembly protein VP3; helix, capsid protein, hydrolase, protease, serine protease, virion, viral protein; 2.30A {Infectious bursal disease virus} PDB: 2z7j_A
Probab=23.34 E-value=84 Score=23.90 Aligned_cols=79 Identities=9% Similarity=0.104 Sum_probs=47.7
Q ss_pred HHHHhhcCch----HhhhhhhcccC----ChhHHHHHHHHhccCCH-HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHh
Q psy13278 56 RDLNRIKSVH----KVASQLLQARK----TQEDVNTVCEMCNKMST-NQIIKLLNLYTPADDYEERISQSFIHLIQEKLK 126 (174)
Q Consensus 56 EeW~~~~~lh----iQa~~LLQ~~K----t~~D~~~i~~~C~~L~~-~Qi~klL~~Y~P~~~~E~~ip~~~i~~v~~~~~ 126 (174)
-||...+|.. -|+-.+.-.+- +.+-.+-+..--.+..+ .+|.++++.-. -...-++-|.+|++.|++...
T Consensus 36 pEWVa~NgyRGPsp~Q~KY~~it~~~P~pge~y~dy~~~~~~~p~~~~kirrla~svy-g~p~q~papeef~dava~v~~ 114 (139)
T 2r18_A 36 PEWVALNGHRGPSPGQLKYWQNTREIPDPNEDYLDYVHAEKSRLASEEQILRAATSIY-GAPGQAEPPQAFIDEVAKVYE 114 (139)
T ss_dssp HHHHHHTTSSCCCHHHHHHHHHHCSCCCTTCCCTTTTSCCCCCCCCHHHHHHHHHHHH-CCGGGCCCCHHHHHHHHHHHH
T ss_pred hHHHHHcCCCCCCHHHhHHHHhhccCCCCCcchhhcccCCcCCCChHHHHHHHHHHhh-cCCccCCCCHHHHHHHHHHHH
Confidence 4899888872 44444333222 11112233322244444 78999995544 377788999999999999977
Q ss_pred hCCCCcccc
Q psy13278 127 ERPQSEQST 135 (174)
Q Consensus 127 ~r~~~~~~~ 135 (174)
+.++-.+.+
T Consensus 115 eN~GRGPdQ 123 (139)
T 2r18_A 115 INHGRGPNQ 123 (139)
T ss_dssp HTTTCCCCH
T ss_pred HhCCCCCCH
Confidence 654323333
No 19
>1mjt_A Nitric-oxide synthase homolog; sanos, NO, NOS, bacterial, MRSA, seitu, oxidoreductase; HET: SUC HEM NAD; 2.40A {Staphylococcus aureus} SCOP: d.174.1.1
Probab=22.46 E-value=40 Score=29.43 Aligned_cols=33 Identities=9% Similarity=0.049 Sum_probs=29.2
Q ss_pred ccchhccchhhhhHHHHHHHHHHHHh-hhhhHHh
Q psy13278 2 STSQVRDLNRIKSVHKVASQLLQARK-TQEDVNT 34 (174)
Q Consensus 2 ~~~~~~~~~~~~~v~q~fsQLf~~i~-~fNdl~s 34 (174)
++|.|.|.-++++-..+|..|+..++ +.|+=..
T Consensus 70 ~~L~V~D~R~~~t~~~~~~al~~Hi~~AtN~G~I 103 (347)
T 1mjt_A 70 DSLNVIDARDVTDEASFLSSITYHITQATNEGKL 103 (347)
T ss_dssp GGCEEEEETTCCSHHHHHHHHHHHHHHHHGGGSC
T ss_pred CcCeeeecccCCCHHHHHHHHHHHHHHhccCCcc
Confidence 68999999999999999999999997 8886443
No 20
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=22.28 E-value=37 Score=22.07 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=12.0
Q ss_pred chhHHHHHHhhcCc
Q psy13278 51 STSQVRDLNRIKSV 64 (174)
Q Consensus 51 Nls~LEeW~~~~~l 64 (174)
....|.+|++.+|+
T Consensus 14 ~~~aIR~WAr~nG~ 27 (55)
T 2kng_A 14 QSAAIREWARRNGH 27 (55)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHcCC
Confidence 45689999999998
No 21
>1m7v_A Nitric oxide synthase; pterin oxygenase, bacteria, heme, oxidoreductase; HET: ARG HEM THG; 1.95A {Bacillus subtilis} SCOP: d.174.1.1 PDB: 2fbz_X* 2fc1_A* 1m7z_A* 2fc2_A* 2an0_A* 2amo_A* 2an2_A*
Probab=22.23 E-value=41 Score=29.54 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=29.3
Q ss_pred ccchhccchhhhhHHHHHHHHHHHHh-hhhhHHh
Q psy13278 2 STSQVRDLNRIKSVHKVASQLLQARK-TQEDVNT 34 (174)
Q Consensus 2 ~~~~~~~~~~~~~v~q~fsQLf~~i~-~fNdl~s 34 (174)
++|.|.|.-++++-..+|..|+..++ ++|+=..
T Consensus 73 ~~L~V~D~R~~~t~~~~~~al~~Hi~~AtN~G~I 106 (363)
T 1m7v_A 73 NSLNVIDRRDVRTKEDVRDALFHHIETATNNGKI 106 (363)
T ss_dssp GGCEEEECTTCCSHHHHHHHHHHHHHHHHGGGSC
T ss_pred CcCeeeeccCCCCHHHHHHHHHHHHHHhccCCcc
Confidence 68999999999999999999999997 8886443
No 22
>2ort_A Nitric oxide synthase, inducible; L-arginine monooxygenase, heme, dimerization, inhibitor, NOS, oxidoreductase; HET: HEM 342; 1.87A {Mus musculus} PDB: 1dd7_A* 2oro_A* 2orq_A* 2orr_A* 2ors_A* 2orp_A* 1nos_A* 1noc_A* 2nos_A* 1df1_A* 1nod_A* 2nod_A* 3nod_A* 3nw2_A* 2bhj_A* 1dwv_A* 1dww_A* 1dwx_A* 1n2n_A* 1qw4_A* ...
Probab=21.13 E-value=45 Score=29.56 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=29.4
Q ss_pred ccchhccchhhhhHHHHHHHHHHHHh-hhhhHHh
Q psy13278 2 STSQVRDLNRIKSVHKVASQLLQARK-TQEDVNT 34 (174)
Q Consensus 2 ~~~~~~~~~~~~~v~q~fsQLf~~i~-~fNdl~s 34 (174)
++|.|.|.-++++-..+|..|+..++ ++|+=..
T Consensus 88 ~~L~V~D~R~v~t~~~m~~al~~Hi~~AtN~G~I 121 (389)
T 2ort_A 88 SNLQVFDARNCSTAQEMFQHICRHILYATNNGNI 121 (389)
T ss_dssp TCCEEEECTTCCSHHHHHHHHHHHHHHHHGGGSC
T ss_pred ccCeeeeccCCCCHHHHHHHHHHHHHHhccCCcc
Confidence 68999999999999999999999997 8886443
No 23
>3n5w_A Nitric oxide synthase; heme enzyme, substrate inhibitor, Zn oxidoreductase, oxidoreductase-oxidoreductase inhibitor COM; HET: HEM XFJ; 1.73A {Rattus norvegicus} SCOP: d.174.1.1 PDB: 2hx3_A* 2hx4_A* 3b3m_A* 3b3n_A* 3b3o_A* 3b3p_A* 3hsn_A* 3hso_A* 3hsp_A* 3jt3_A* 3jt4_A* 3jt5_A* 3jt6_A* 3jt7_A* 3jt8_A* 3jt9_A* 3jta_A* 3n2r_A* 3n5v_A* 1om4_A* ...
Probab=20.90 E-value=45 Score=29.83 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=29.5
Q ss_pred ccchhccchhhhhHHHHHHHHHHHHh-hhhhHHh
Q psy13278 2 STSQVRDLNRIKSVHKVASQLLQARK-TQEDVNT 34 (174)
Q Consensus 2 ~~~~~~~~~~~~~v~q~fsQLf~~i~-~fNdl~s 34 (174)
|+|.|.|.-++++-..+|..|+..++ ++|+=..
T Consensus 126 ~~L~V~D~R~~~t~~~m~~al~~Hi~~AtN~G~I 159 (422)
T 3n5w_A 126 SKLQVFDARDCTTAHGMFNYICNHVKYATNKGNL 159 (422)
T ss_dssp TCCEEEECTTCCSHHHHHHHHHHHHHHHHGGGSC
T ss_pred ccceeeecccCCCHHHHHHHHHHHHHHhccCCCc
Confidence 68999999999999999999999997 8887544
No 24
>3e7m_A Nitric oxide synthase, inducible; NOS, heme, tetrahydrobiopterin, oxido calmodulin-binding, FAD, FMN, iron, metal-binding, NADP, oxidoreductase; HET: HEM H4B AT2; 2.00A {Mus musculus} SCOP: d.174.1.1 PDB: 2y37_A* 1r35_A* 3e67_A* 3e68_A* 3e6l_A* 3e6n_A* 3e6o_A* 3e6t_A* 3e7i_A* 3e65_A* 3e7t_A* 3eai_A* 3ebd_A* 3ebf_A* 3nqs_A* 1m8d_A* 1m8e_A* 1m8h_A* 1m8i_A* 1m9t_A* ...
Probab=20.20 E-value=48 Score=29.77 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=29.5
Q ss_pred ccchhccchhhhhHHHHHHHHHHHHh-hhhhHHh
Q psy13278 2 STSQVRDLNRIKSVHKVASQLLQARK-TQEDVNT 34 (174)
Q Consensus 2 ~~~~~~~~~~~~~v~q~fsQLf~~i~-~fNdl~s 34 (174)
|+|.|.|.-++++-..+|..|+..++ ++|+=..
T Consensus 136 ~~L~V~D~R~~~t~~~m~~al~~Hi~~AtN~G~I 169 (433)
T 3e7m_A 136 SNLQVFDARNCSTAQEMFQHICRHILYATNNGNI 169 (433)
T ss_dssp TCCEEEECTTCCSHHHHHHHHHHHHHHHHGGGSC
T ss_pred ccCeeeecccCCCHHHHHHHHHHHHHHhccCCCc
Confidence 68999999999999999999999997 8887544
Done!