Query psy13278
Match_columns 174
No_of_seqs 137 out of 236
Neff 5.3
Searched_HMMs 13730
Date Sat Aug 17 00:41:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13278.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13278hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wlza1 a.39.1.7 (A:229-311) D 55.2 17 0.0012 22.2 5.9 60 53-114 9-74 (83)
2 d1o6ba_ c.26.1.3 (A:) Phosphop 52.0 14 0.001 24.7 5.5 39 89-130 124-162 (163)
3 d2c35a1 a.60.8.2 (A:14-142) RN 39.3 20 0.0014 24.6 4.6 54 51-104 66-125 (129)
4 d1j2na_ a.165.1.1 (A:) Myosin 33.8 13 0.00092 25.3 2.6 60 54-126 30-95 (99)
5 d1qjca_ c.26.1.3 (A:) Phosphop 29.9 34 0.0025 22.1 4.5 33 90-125 124-156 (157)
6 d2gf5a2 a.77.1.4 (A:2-83) FADD 27.9 12 0.00087 23.8 1.6 74 19-103 3-81 (82)
7 d1od6a_ c.26.1.3 (A:) Phosphop 26.7 41 0.003 21.8 4.4 33 90-125 126-158 (160)
8 d1wdcc_ a.39.1.5 (C:) Myosin R 26.5 43 0.0031 22.1 4.6 38 77-114 100-138 (152)
9 d1tiza_ a.39.1.5 (A:) Calmodul 26.2 38 0.0027 19.7 3.8 45 77-123 19-65 (67)
10 d1jeqa1 a.140.2.1 (A:559-609) 24.0 20 0.0014 21.2 2.0 18 47-64 15-32 (51)
11 d1seda_ a.219.1.1 (A:) Hypothe 23.4 14 0.001 25.5 1.3 33 72-104 31-65 (112)
12 d1y14a_ a.60.8.2 (A:) RNA poly 22.5 78 0.0057 23.1 5.6 71 17-101 94-167 (176)
13 d1vlha_ c.26.1.3 (A:) Phosphop 22.1 54 0.004 21.1 4.3 34 90-126 124-157 (157)
14 d1tiqa_ d.108.1.1 (A:) Proteas 21.9 31 0.0022 23.3 3.0 16 72-87 2-18 (173)
15 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 20.1 20 0.0014 21.9 1.5 12 53-64 66-77 (78)
No 1
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.23 E-value=17 Score=22.20 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=37.9
Q ss_pred hHHHHHHhhcCch-HhhhhhhcccC----ChhHHHHHH-HHhccCCHHHHHHHHHhcCCCCCCCCCCC
Q psy13278 53 SQVRDLNRIKSVH-KVASQLLQARK----TQEDVNTVC-EMCNKMSTNQIIKLLNLYTPADDYEERIS 114 (174)
Q Consensus 53 s~LEeW~~~~~lh-iQa~~LLQ~~K----t~~D~~~i~-~~C~~L~~~Qi~klL~~Y~P~~~~E~~ip 114 (174)
.+|.++..++... .+|=+.+=..+ +.+++..++ .+|..|+..|+.+++..|-+ +....|+
T Consensus 9 ~~l~~~i~~~~~~l~~~F~~~D~~~~G~i~~~ef~~~l~~~~~~l~~~e~~~l~~~~d~--~~~g~I~ 74 (83)
T d1wlza1 9 ARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPV--NAKGRLK 74 (83)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCB--CTTSCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCceEChhHHHHHHHHhCCCCChhHHHHHhhcccc--CCCCcEe
Confidence 3566666654332 33333332222 667776666 78999999999999999985 3444554
No 2
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=52.01 E-value=14 Score=24.67 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=31.0
Q ss_pred ccCCHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHhhCCC
Q psy13278 89 NKMSTNQIIKLLNLYTPADDYEERISQSFIHLIQEKLKERPQ 130 (174)
Q Consensus 89 ~~L~~~Qi~klL~~Y~P~~~~E~~ip~~~i~~v~~~~~~r~~ 130 (174)
...|+.+|++.+.. -.+-+.-||+++.++|+++.++++.
T Consensus 124 ~~ISST~IR~~i~~---g~~i~~lVP~~V~~yI~e~~~~~~~ 162 (163)
T d1o6ba_ 124 SFLSSSIVKEVARY---DGSVSEFVPPEVELALQQKFRQGGS 162 (163)
T ss_dssp TTCCHHHHHHHHHT---TCCCTTTSCHHHHHHHHHHHHSCSC
T ss_pred hccCHHHHHHHHHc---CCChHHhCCHHHHHHHHHHHhccCC
Confidence 34799999998865 2445667999999999999888654
No 3
>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.32 E-value=20 Score=24.63 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=40.3
Q ss_pred chhHHHHHHhhcCch-HhhhhhhcccC-ChhHHHHHHHHh-ccCCHHHHHHHH---HhcC
Q psy13278 51 STSQVRDLNRIKSVH-KVASQLLQARK-TQEDVNTVCEMC-NKMSTNQIIKLL---NLYT 104 (174)
Q Consensus 51 Nls~LEeW~~~~~lh-iQa~~LLQ~~K-t~~D~~~i~~~C-~~L~~~Qi~klL---~~Y~ 104 (174)
.+..+++-....|++ .+++++.=++- +.+++..|..-| .+++..|+.+|| +.|+
T Consensus 66 s~~~~~~ll~~~~L~~~E~~~i~Nl~P~~~~El~~li~~l~~r~see~l~~iLd~l~~~r 125 (129)
T d2c35a1 66 TIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKR 125 (129)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHCCSSHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcccCCCHHHHHHHhCCCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Confidence 445677777777885 66777766655 899999999888 588998888887 4555
No 4
>d1j2na_ a.165.1.1 (A:) Myosin phosphatase inhibitor 17kDa protein, CPI-17 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=33.85 E-value=13 Score=25.28 Aligned_cols=60 Identities=18% Similarity=0.311 Sum_probs=41.5
Q ss_pred HHHHHHhhcCchHhhhhhhcccC-C---hhHHHHHHHHhccCCH-HHHHHHH-HhcCCCCCCCCCCCHHHHHHHHHHHh
Q psy13278 54 QVRDLNRIKSVHKVASQLLQARK-T---QEDVNTVCEMCNKMST-NQIIKLL-NLYTPADDYEERISQSFIHLIQEKLK 126 (174)
Q Consensus 54 ~LEeW~~~~~lhiQa~~LLQ~~K-t---~~D~~~i~~~C~~L~~-~Qi~klL-~~Y~P~~~~E~~ip~~~i~~v~~~~~ 126 (174)
.+|+|... |...|-++.- . .=|++.+.++-+.--- ..|+.+| ..|.|. .+||+-+-.+++
T Consensus 30 ~~E~WI~~-----qL~~Ly~~~e~~~p~EIDiDeLLdl~s~e~R~~~lq~lL~~c~kPt--------E~FI~eLL~klr 95 (99)
T d1j2na_ 30 DVEKWIDG-----RLEELYRGREADMPDEVNIDELLELESEEERSRKIQGLLKSCTNPT--------ENFVQELLVKLR 95 (99)
T ss_dssp HHHHHHHH-----HHHHHCSSCCTTCCSCCCHHHHTCSSCSHHHHHHHHHHHTSSSSCS--------HHHHHHHHHHTS
T ss_pred HHHHHHHH-----HHHHHhcCcccCCCCccCHHHHHccCChHHHHHHHHHHHHhcCCCh--------HHHHHHHHHHHH
Confidence 68999999 9999999875 2 4568888766444333 3578888 556662 367777766654
No 5
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]}
Probab=29.91 E-value=34 Score=22.06 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=25.8
Q ss_pred cCCHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHH
Q psy13278 90 KMSTNQIIKLLNLYTPADDYEERISQSFIHLIQEKL 125 (174)
Q Consensus 90 ~L~~~Qi~klL~~Y~P~~~~E~~ip~~~i~~v~~~~ 125 (174)
..|+.+|+..+..= .+-+.-||+++.++|++++
T Consensus 124 ~ISST~IR~~i~~g---~di~~lvP~~V~~yI~~k~ 156 (157)
T d1qjca_ 124 FISSSLVKEVARHQ---GDVTHFLPENVHQALMAKL 156 (157)
T ss_dssp TCCHHHHHHHHHTT---CCCGGGSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHcC---CChHHhCCHHHHHHHHHhh
Confidence 36889999888763 3445679999999998876
No 6
>d2gf5a2 a.77.1.4 (A:2-83) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.94 E-value=12 Score=23.80 Aligned_cols=74 Identities=8% Similarity=0.160 Sum_probs=47.4
Q ss_pred HHHHHHHHh---hhhhHHhhhccccccccccccccchhHHHHHHhhcCchHhhhh-hhcccC-ChhHHHHHHHHhccCCH
Q psy13278 19 ASQLLQARK---TQEDVNTVCEMCNKMSTNQVRAVSTSQVRDLNRIKSVHKVASQ-LLQARK-TQEDVNTVCEMCNKMST 93 (174)
Q Consensus 19 fsQLf~~i~---~fNdl~s~~~lCs~~~G~QIr~~Nls~LEeW~~~~~lhiQa~~-LLQ~~K-t~~D~~~i~~~C~~L~~ 93 (174)
|.++++-|. +..|+...+-+|.-.- .-+++|.=... .+.-. |-...+ +++|++.+-+++...+-
T Consensus 3 fr~lL~~Is~~L~~~dl~~lKfl~~d~i-------~~~~le~~~~~----l~lf~~Le~~~~l~~~nl~~L~~lL~~i~R 71 (82)
T d2gf5a2 3 FLVLLHSVSSSLSSSELTELKYLCLGRV-------GKRKLERVQSG----LDLFSMLLEQNDLEPGHTELLRELLASLRR 71 (82)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHTTTTS-------CHHHHHHCCSS----HHHHHHHHHTTSCCSSCCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhc-------CHHHHHccCCH----HHHHHHHHHcCCCCCccHHHHHHHHHHcCh
Confidence 678888882 7888888888886432 33344321111 11111 222344 77888888888888888
Q ss_pred HHHHHHHHhc
Q psy13278 94 NQIIKLLNLY 103 (174)
Q Consensus 94 ~Qi~klL~~Y 103 (174)
..+.+.++.|
T Consensus 72 ~DL~~~i~~y 81 (82)
T d2gf5a2 72 HDLLRRVDDF 81 (82)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888888877
No 7
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=26.66 E-value=41 Score=21.78 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=26.3
Q ss_pred cCCHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHH
Q psy13278 90 KMSTNQIIKLLNLYTPADDYEERISQSFIHLIQEKL 125 (174)
Q Consensus 90 ~L~~~Qi~klL~~Y~P~~~~E~~ip~~~i~~v~~~~ 125 (174)
..|+..|++.+.. -.+-+.-||+++.++|++++
T Consensus 126 ~ISST~IR~~i~~---g~~i~~lVP~~V~~yIkek~ 158 (160)
T d1od6a_ 126 FVSSTMVKEIARY---GGDVSKLVPPATLRALKAKL 158 (160)
T ss_dssp TCCHHHHHHHHHT---TCCCTTTSCHHHHHHHHHHT
T ss_pred ccchHHHHHHHHc---CCChHHhcCHHHHHHHHHHh
Confidence 4688999998865 34567779999999998876
No 8
>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=26.47 E-value=43 Score=22.11 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=23.1
Q ss_pred ChhHHHHHH-HHhccCCHHHHHHHHHhcCCCCCCCCCCC
Q psy13278 77 TQEDVNTVC-EMCNKMSTNQIIKLLNLYTPADDYEERIS 114 (174)
Q Consensus 77 t~~D~~~i~-~~C~~L~~~Qi~klL~~Y~P~~~~E~~ip 114 (174)
+.+|+..++ .++..++..++..+++.+....+.+..|+
T Consensus 100 ~~~el~~~l~~~g~~ls~~e~~~l~~~~d~~~d~~G~I~ 138 (152)
T d1wdcc_ 100 SGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVK 138 (152)
T ss_dssp EHHHHHHHHHHSSSCCCHHHHHHHHHHHTCCCCTTSEEE
T ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCCCCCEEE
Confidence 456655555 45577777777777777764233344565
No 9
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=26.16 E-value=38 Score=19.70 Aligned_cols=45 Identities=13% Similarity=0.302 Sum_probs=29.3
Q ss_pred ChhHHHHHH-HHhccCCHHHHHHHHHhcCCCCCCCCCCC-HHHHHHHHH
Q psy13278 77 TQEDVNTVC-EMCNKMSTNQIIKLLNLYTPADDYEERIS-QSFIHLIQE 123 (174)
Q Consensus 77 t~~D~~~i~-~~C~~L~~~Qi~klL~~Y~P~~~~E~~ip-~~~i~~v~~ 123 (174)
+.+++..+. .++..++..++.++++.+-. +....|. .+|+..+.+
T Consensus 19 ~~~El~~~l~~lg~~~~~~~i~~~~~~~D~--d~dg~I~~~EF~~~m~~ 65 (67)
T d1tiza_ 19 SLDEFREVALAFSPYFTQEDIVKFFEEIDV--DGNGELNADEFTSCIEK 65 (67)
T ss_dssp EHHHHHHHHHHTCTTSCHHHHHHHHHHHCC--SSSSEECHHHHHHHHHT
T ss_pred cHHHHHHHHHHhccccchHHHHHHHHHhCC--CCCCeEeHHHHHHHHHH
Confidence 345544444 57788888889998888873 4445666 446665543
No 10
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.02 E-value=20 Score=21.22 Aligned_cols=18 Identities=6% Similarity=0.180 Sum_probs=15.2
Q ss_pred ccccchhHHHHHHhhcCc
Q psy13278 47 VRAVSTSQVRDLNRIKSV 64 (174)
Q Consensus 47 Ir~~Nls~LEeW~~~~~l 64 (174)
+.+..+..|.++|+.+|+
T Consensus 15 L~kltV~~LK~~lk~~gL 32 (51)
T d1jeqa1 15 LGKFTVPMLKEACRAYGL 32 (51)
T ss_dssp GGGCCHHHHHHHHHHTTC
T ss_pred HhhCcHHHHHHHHHHcCC
Confidence 344589999999999998
No 11
>d1seda_ a.219.1.1 (A:) Hypothetical protein YhaI {Bacillus subtilis [TaxId: 1423]}
Probab=23.39 E-value=14 Score=25.54 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=25.7
Q ss_pred hcccC--ChhHHHHHHHHhccCCHHHHHHHHHhcC
Q psy13278 72 LQARK--TQEDVNTVCEMCNKMSTNQIIKLLNLYT 104 (174)
Q Consensus 72 LQ~~K--t~~D~~~i~~~C~~L~~~Qi~klL~~Y~ 104 (174)
|-++| |.+|++.+...|..||-.+...--..|.
T Consensus 31 lvI~k~lskeeve~~~~lCeeL~~q~~~QKaeGfv 65 (112)
T d1seda_ 31 LLIDKGLSKEEGEAVMRICDELSEELATQKAQGFV 65 (112)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHHcchh
Confidence 34455 7899999999999999887776655555
No 12
>d1y14a_ a.60.8.2 (A:) RNA polymerase II subunit RBP4 (RpoF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.47 E-value=78 Score=23.06 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhhhHHhhhccccccccccccccchhHHHHHHhhcCch-HhhhhhhcccC-ChhHHHHHH-HHhccCCH
Q psy13278 17 KVASQLLQARKTQEDVNTVCEMCNKMSTNQVRAVSTSQVRDLNRIKSVH-KVASQLLQARK-TQEDVNTVC-EMCNKMST 93 (174)
Q Consensus 17 q~fsQLf~~i~~fNdl~s~~~lCs~~~G~QIr~~Nls~LEeW~~~~~lh-iQa~~LLQ~~K-t~~D~~~i~-~~C~~L~~ 93 (174)
++|..-|.|...|... +.. . .+..+++-.+.+|+| .++|+|-=+-- |.+.+.++. +...+.+.
T Consensus 94 ~v~~kTldYl~~Fsk~----------k~~---e-s~~~vrelL~~~~L~~fE~a~L~NLcPet~eEAkaLiPSL~~k~~d 159 (176)
T d1y14a_ 94 KDLKNTMQYLTNFSRF----------RDQ---E-TVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISD 159 (176)
T ss_dssp HHHHHHHHHHHHHCSC----------CSH---H-HHHHHHHHHHTTTCCHHHHHHHHHSCCSSHHHHHHHSGGGTTTSCH
T ss_pred HHHHHHHHHHHHhccC----------CCH---H-HHHHHHHHHHhcCCCHHHHHHhhccCCCCHHHHHHHhhhhcccCCH
Confidence 4567777777655432 222 2 556777888889997 66666555433 555555544 33345577
Q ss_pred HHHHHHHH
Q psy13278 94 NQIIKLLN 101 (174)
Q Consensus 94 ~Qi~klL~ 101 (174)
.++++||.
T Consensus 160 e~Lq~IL~ 167 (176)
T d1y14a_ 160 DELERILK 167 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777774
No 13
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]}
Probab=22.06 E-value=54 Score=21.07 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=26.0
Q ss_pred cCCHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHh
Q psy13278 90 KMSTNQIIKLLNLYTPADDYEERISQSFIHLIQEKLK 126 (174)
Q Consensus 90 ~L~~~Qi~klL~~Y~P~~~~E~~ip~~~i~~v~~~~~ 126 (174)
..|+.+|++.+.. -.+-+.-||+++.++|.++++
T Consensus 124 ~ISST~IR~~i~~---g~~i~~lvP~~V~~yI~ek~~ 157 (157)
T d1vlha_ 124 FISSSLVKEVALY---GGDVTEWVPPEVARALNEKLK 157 (157)
T ss_dssp TCCHHHHHHHHHT---TCCCTTTSCHHHHHHHHHHTC
T ss_pred eecHHHHHHHHHc---CCChhHhcCHHHHHHHHHHhC
Confidence 4688899988866 345566799999999988753
No 14
>d1tiqa_ d.108.1.1 (A:) Protease synthase and sporulation negative regulatory protein PaiA {Bacillus subtilis [TaxId: 1423]}
Probab=21.94 E-value=31 Score=23.31 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=13.3
Q ss_pred hcccC-ChhHHHHHHHH
Q psy13278 72 LQARK-TQEDVNTVCEM 87 (174)
Q Consensus 72 LQ~~K-t~~D~~~i~~~ 87 (174)
+++|+ |++|++.|.++
T Consensus 2 i~ir~at~~D~~~l~~l 18 (173)
T d1tiqa_ 2 VKMKKCSREDLQTLQQL 18 (173)
T ss_dssp EEEEECCGGGHHHHHHH
T ss_pred EEEEECCHHHHHHHHHH
Confidence 46788 99999999876
No 15
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=20.08 E-value=20 Score=21.92 Aligned_cols=12 Identities=8% Similarity=-0.011 Sum_probs=10.1
Q ss_pred hHHHHHHhhcCc
Q psy13278 53 SQVRDLNRIKSV 64 (174)
Q Consensus 53 s~LEeW~~~~~l 64 (174)
+.|++|+++||+
T Consensus 66 ~~I~~~~~~~~~ 77 (78)
T d1t1ha_ 66 SLIALWCESNGI 77 (78)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHHhCc
Confidence 468999999985
Done!