RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13278
(174 letters)
>gnl|CDD|216736 pfam01843, DIL, DIL domain. The DIL domain has no known function.
Length = 105
Score = 49.5 bits (119), Expect = 2e-08
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 68 ASQLLQARK-TQEDVNTVCEMCNKMSTNQIIKLLNLYTPADDY 109
A LLQ +K T ED+ +C++C ++ QI KLL LY P D
Sbjct: 63 AVNLLQIKKSTIEDIEILCDLCPALNPAQIHKLLTLYKPDDYE 105
Score = 34.9 bits (81), Expect = 0.005
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 19 ASQLLQARK-TQEDVNTVCEMCNKMSTNQVRAVSTS 53
A LLQ +K T ED+ +C++C ++ Q+ + T
Sbjct: 63 AVNLLQIKKSTIEDIEILCDLCPALNPAQIHKLLTL 98
>gnl|CDD|236591 PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta;
Reviewed.
Length = 324
Score = 28.6 bits (65), Expect = 1.5
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 19/55 (34%)
Query: 89 NKMS-TNQIIKL------LNLYTPADDYEERISQSFIHLIQEKLKERPQSEQSTL 136
KM+ T QII+L L+ Y +L QE L+E P+ EQ L
Sbjct: 182 GKMTGTAQIIRLIIRDESLHGY------------YIGYLFQEGLEELPELEQEEL 224
>gnl|CDD|190325 pfam02488, EMA, Merozoite Antigen. This family represents the
immunodominant surface antigen of Theileria parasites
including equi merozoite antigen-1 (EMA-1) and equi
merozoite antigen-2 (EMA-2). The protein shows variation
at a putative glycosylation site, a potential mechanism
for host immune response evasion.
Length = 251
Score = 28.2 bits (63), Expect = 1.8
Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 94 NQIIKLLNLYTPADDYEERISQSFIHLIQEKLKERPQSEQSTLL--MDTKF 142
++++L YT + R+ + + L+ +K Q + + L MD+ +
Sbjct: 175 KKVVRLDYFYTG----DSRLKEVYFELVDDKWVRVEQKDANKALHAMDSSW 221
>gnl|CDD|224416 COG1499, NMD3, NMD protein affecting ribosome stability and mRNA
decay [Translation, ribosomal structure and biogenesis].
Length = 355
Score = 28.1 bits (63), Expect = 2.7
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 6/36 (16%)
Query: 32 VNTVCEMCNKMSTN------QVRAVSTSQVRDLNRI 61
T+C C++ + QVRA +
Sbjct: 128 RRTLCPRCSRFTGGYYEAIVQVRAKGRELTEEEEEA 163
>gnl|CDD|218359 pfam04981, NMD3, NMD3 family. The NMD3 protein is involved in
nonsense mediated mRNA decay. This amino terminal region
contains four conserved CXXC motifs that could be metal
binding. NMD3 is involved in export of the 60S ribosomal
subunit is mediated by the adapter protein Nmd3p in a
Crm1p-dependent pathway.
Length = 238
Score = 27.3 bits (61), Expect = 4.4
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 8/57 (14%)
Query: 32 VNTVCEMCNKMSTN------QVRAVSTSQVRDLNRIKSVHKVASQLLQARKTQEDVN 82
C C++++ QVR + K HK L+ + D +
Sbjct: 120 NRQQCPDCSRIAGGYWEAIVQVRQKGRKLTEEE--KKVAHKRTFLYLEQLILKHDAH 174
>gnl|CDD|218954 pfam06246, Isy1, Isy1-like splicing family. Isy1 protein is
important in the optimisation of splicing.
Length = 253
Score = 27.3 bits (61), Expect = 4.6
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 11 RIKSVHKVASQLLQARKTQEDVNTVCEMCNKMSTNQVRAVSTSQVRDLN 59
R K + +V + L +A K + + + E+ K++ Q ++ Q+RDLN
Sbjct: 33 RPKLISEV-TSLPEAEKWRSQI--IKEISRKVTEIQDPSLGEYQIRDLN 78
>gnl|CDD|220448 pfam09863, DUF2090, Uncharacterized protein conserved in bacteria
(DUF2090). This domain, found in various prokaryotic
carbohydrate kinases, has no known function.
Length = 310
Score = 27.2 bits (61), Expect = 5.3
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 93 TNQIIKLLNLYTPADDYEERISQSFIHLIQEKLKE 127
++K L Y P DD R Q + KLK
Sbjct: 137 LEHVVKCLVFYHPDDDAALRAEQ------EAKLKR 165
>gnl|CDD|214349 CHL00060, atpB, ATP synthase CF1 beta subunit.
Length = 494
Score = 27.3 bits (61), Expect = 5.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 30 EDVNTVCEMCNKMSTNQVRAVSTSQVRDLNR 60
+++N CE+ + N+VRAV+ S L R
Sbjct: 53 QEINVTCEVQQLLGNNRVRAVAMSATDGLMR 83
>gnl|CDD|233488 TIGR01599, PYST-A, Plasmodium yoelii subtelomeric family PYST-A.
This model represents a paralogous family of Plasmodium
yoelii genes preferentially located in the subtelomeric
regions of the chromosomes. Members of this family are
expressed in both the Sporozoite and Gametozoite life
stages. A single high-scoring gene was identified in the
complete genome of P. falciparum as well as a single
gene from P. chaboudi from GenBank which were included
in the seed. There are no obvious homologs to these
genes in any non-Plasmodium organism. These observations
suggest an expansion of this family in yoelii from a
common Plasmodium ancestor gene (present in a single
copy in falciparum).
Length = 208
Score = 26.6 bits (59), Expect = 7.3
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 76 KTQEDVNTVCEMCNKMSTNQIIKLLNLYTPADDYEERI-----SQSFIHL 120
T ++N ++ K N+II+ N + D EE I + F++L
Sbjct: 142 CTSANINDHNKVDKKNFKNKIIESANSFKTDIDSEEDIRNGELKKMFVNL 191
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.127 0.341
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,850,614
Number of extensions: 643052
Number of successful extensions: 637
Number of sequences better than 10.0: 1
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 25
Length of query: 174
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 84
Effective length of database: 6,945,742
Effective search space: 583442328
Effective search space used: 583442328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)