RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13278
         (174 letters)



>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 27.4 bits (60), Expect = 1.1
 Identities = 15/114 (13%), Positives = 39/114 (34%), Gaps = 2/114 (1%)

Query: 61  IKSVHKVASQLLQARKTQEDVNTVCEMCNKMSTNQIIKLLNLYTPADDYEERISQSFIHL 120
           +       S+++ +  T     T   +     + ++++LL  Y P +D    +       
Sbjct: 218 VSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPED--PAVRGRLTEC 275

Query: 121 IQEKLKERPQSEQSTLLMDTKFNFSVRFPFSASNIQLEHIEIPDVLQVPMLKKI 174
           ++  L +  +  +S  +  +    +V F   +  I  +      V     L + 
Sbjct: 276 LETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQF 329


>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
          {Archaeon Aeropyrum pernix [TaxId: 56636]}
          Length = 234

 Score = 26.5 bits (58), Expect = 1.6
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 7  RDLNRIKSVHKVASQ----LLQARKTQEDVNTVCEMCNKMSTNQVRAVSTSQVRDLNRI- 61
          + L+R+ S   +AS+    LL  R T+EDV  +    +         ++      ++ + 
Sbjct: 9  QGLDRLGSPEDLASRIDSTLLSPRATEEDVRNLVREASDYGFRCA-VLTPVYTVKISGLA 67

Query: 62 -KSVHKVAS 69
           K   K+ S
Sbjct: 68 EKLGVKLCS 76


>d3b7sa1 a.118.1.7 (A:461-610) Leukotriene A4 hydrolase C-terminal
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 150

 Score = 26.0 bits (57), Expect = 1.8
 Identities = 8/40 (20%), Positives = 15/40 (37%)

Query: 106 ADDYEERISQSFIHLIQEKLKERPQSEQSTLLMDTKFNFS 145
           A D ++  S      + + L+  P        M   +NF+
Sbjct: 28  ATDLKDLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFN 67


>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus
           subtilis [TaxId: 1423]}
          Length = 146

 Score = 25.6 bits (56), Expect = 2.5
 Identities = 6/33 (18%), Positives = 13/33 (39%)

Query: 137 LMDTKFNFSVRFPFSASNIQLEHIEIPDVLQVP 169
           + D + N  V    + +   L  ++I  +   P
Sbjct: 114 VTDGQLNLLVTEGKAGTAFTLSALKIKKLSDQP 146


>d1vq3a_ d.284.1.1 (A:) PurS subunit of FGAM synthetase
          {Thermotoga maritima [TaxId: 2336]}
          Length = 86

 Score = 24.3 bits (53), Expect = 4.0
 Identities = 7/65 (10%), Positives = 22/65 (33%), Gaps = 12/65 (18%)

Query: 33 NTVCEMCNKMSTNQVRAVSTSQVRDLNRIKSVHKVASQLLQARKTQEDVNTVCEMCNKMS 92
           T+  +  +     V+ +   +   L             ++A   ++    V + C ++ 
Sbjct: 26 ETIERVLREEKGLPVKKLRLGKSIHLE------------VEAENKEKAYEIVKKACEELL 73

Query: 93 TNQII 97
           N ++
Sbjct: 74 VNPVV 78


>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 99

 Score = 24.5 bits (53), Expect = 4.2
 Identities = 7/42 (16%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 89  NKMSTNQIIKLLNLYTPADDYEERISQSFIHLIQEKLKERPQ 130
           ++M   +++ + N++ P D  ++      ++ I+E L+    
Sbjct: 3   SRMRHERVVIIKNMFHPMDFEDDP---LVLNEIREDLRVECS 41


>d1fx0b2 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, domain 1
          {Spinach (Spinacia oleracea), chloroplast [TaxId:
          3562]}
          Length = 79

 Score = 23.8 bits (52), Expect = 5.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 30 EDVNTVCEMCNKMSTNQVRAVSTSQVRDLNR 60
          + +N  CE+   +  N+VRAV+ S    L R
Sbjct: 39 QPMNVTCEVQQLLGNNRVRAVAMSATDGLTR 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.127    0.341 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 536,008
Number of extensions: 21069
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 14
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)