BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13279
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 134 bits (338), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 28 DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 80
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
GG+ TRH
Sbjct: 81 -------------CQGGDFTRH-------------------------------------- 89
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT
Sbjct: 90 ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 136
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/60 (88%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 80 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 139
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 9 DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
GG+ TRH
Sbjct: 62 -------------CQGGDFTRH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT
Sbjct: 71 ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/60 (88%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 9 DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
GG+ TRH
Sbjct: 62 -------------CQGGDFTRH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT
Sbjct: 71 ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 52/58 (89%), Positives = 55/58 (94%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K
Sbjct: 61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 9 DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
GG+ TRH
Sbjct: 62 -------------CQGGDFTRH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT
Sbjct: 71 ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/60 (88%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 8 DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 60
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
GG+ TRH
Sbjct: 61 -------------CQGGDFTRH-------------------------------------- 69
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT
Sbjct: 70 ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 116
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 52/58 (89%), Positives = 55/58 (94%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K
Sbjct: 60 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 117
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 17 DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 69
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
GG+ TRH
Sbjct: 70 -------------CQGGDFTRH-------------------------------------- 78
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT
Sbjct: 79 ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 125
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/60 (88%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 69 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 128
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 9 DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
GG+ TRH
Sbjct: 62 -------------CQGGDFTRH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT
Sbjct: 71 ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/60 (88%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 8 DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 60
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
GG+ TRH
Sbjct: 61 -------------CQGGDFTRH-------------------------------------- 69
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT
Sbjct: 70 ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 116
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/60 (88%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 60 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 119
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 9 DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
GG+ TRH
Sbjct: 62 -------------CQGGDFTRH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT
Sbjct: 71 ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/60 (88%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 133 bits (335), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 91/172 (52%), Gaps = 62/172 (36%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 12 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------ 65
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
GG+ TRH
Sbjct: 66 --------------CQGGDFTRH------------------------------------- 74
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT
Sbjct: 75 -----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 121
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 52/58 (89%), Positives = 55/58 (94%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K
Sbjct: 65 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 122
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 90/171 (52%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 9 DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
GGN T H
Sbjct: 62 -------------CQGGNFTHH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT
Sbjct: 71 ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 52/60 (86%), Positives = 57/60 (95%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGG+FT+HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 61 MCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 9 DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
GG+ TRH
Sbjct: 62 -------------CQGGDFTRH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
NGTGGKSIYG KFEDENF+LKHTGPG+L+MAN+GPNTNGSQFF+CT
Sbjct: 71 ----NGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTA 117
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/60 (86%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+L+MAN+GPNTNGSQFF+CT K E
Sbjct: 61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTE 120
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FH+IIP F+
Sbjct: 9 DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFM------- 61
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
GG+ TRH
Sbjct: 62 -------------CQGGDFTRH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT
Sbjct: 71 ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/60 (88%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 130 bits (328), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 89/172 (51%), Gaps = 62/172 (36%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F
Sbjct: 7 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFX------ 60
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
GG+ TRH
Sbjct: 61 --------------CQGGDFTRH------------------------------------- 69
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
NGTGGKSIYG KFEDENF+LKHTGPG+LS AN+GPNTNGSQFF+CT
Sbjct: 70 -----NGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTA 116
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 51/59 (86%), Positives = 54/59 (91%)
Query: 194 CQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
CQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LS AN+GPNTNGSQFF+CT K E
Sbjct: 61 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTE 119
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 85/171 (49%), Gaps = 55/171 (32%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
DI IG + GRI ++L D+VP+TA NFR LCT E G G G +
Sbjct: 9 DITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSG-----------------K 51
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
L + SKF H N M QGGD
Sbjct: 52 PLHFKGSKF--------------------------------------HRIIPNFMIQGGD 73
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
FT NGTGG+SIYG KF DENF KHTGPGVLSMAN+GPNTNGSQFFLCT
Sbjct: 74 FTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/60 (81%), Positives = 51/60 (85%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
M QGGDFT NGTGG+SIYG KF DENF KHTGPGVLSMAN+GPNTNGSQFFLCT K E
Sbjct: 68 MIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTE 127
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 83/169 (49%), Gaps = 62/169 (36%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
MDIKIG + GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP F+
Sbjct: 16 MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC----- 70
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
G F +H+ K G
Sbjct: 71 -----------------------------------------QGGDFTNHNGTGGKSIYGK 89
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFL 169
F + N F+LKHTGPG+LSMANSGPNTNGSQFFL
Sbjct: 90 KFDDEN----------------FILKHTGPGLLSMANSGPNTNGSQFFL 122
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/60 (86%), Positives = 55/60 (91%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGPNTNGSQFFL K +
Sbjct: 69 MCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTD 128
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 83/169 (49%), Gaps = 62/169 (36%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
MDIKIG + GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP F+
Sbjct: 8 MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC----- 62
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
G F +H+ K G
Sbjct: 63 -----------------------------------------QGGDFTNHNGTGGKSIYGK 81
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFL 169
F + N F+LKHTGPG+LSMANSGPNTNGSQFFL
Sbjct: 82 KFDDEN----------------FILKHTGPGLLSMANSGPNTNGSQFFL 114
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/60 (86%), Positives = 55/60 (91%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGPNTNGSQFFL K +
Sbjct: 61 MCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTD 120
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/60 (88%), Positives = 57/60 (95%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGGDFT+HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 60 MCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 119
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/57 (87%), Positives = 55/57 (96%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
MCQGGDFT+HNGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT
Sbjct: 60 MCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 116
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 87/168 (51%), Gaps = 62/168 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
D+ + +GRIT++L ++VPRTAENFR LCT EKGFG++ S FHR+IPDFV
Sbjct: 12 DVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFV------- 64
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
GG+ T+H
Sbjct: 65 -------------CQGGDITKH-------------------------------------- 73
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFL 169
+GTGG+SIYG+KFEDENF +KHTGPG+LSMAN G NTN SQF +
Sbjct: 74 ----DGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVI 117
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 49/60 (81%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
+CQGGD T H+GTGG+SIYG+KFEDENF +KHTGPG+LSMAN G NTN SQF + K E
Sbjct: 64 VCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAE 123
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 79/168 (47%), Gaps = 62/168 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
DIKIG + GRI LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP F
Sbjct: 18 DIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXC------ 71
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
G F +H+ K G
Sbjct: 72 ----------------------------------------QGGDFTNHNGTGGKSIYGKK 91
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFL 169
F + N F+LKHTGPG+LS ANSGPNTNGSQFFL
Sbjct: 92 FDDEN----------------FILKHTGPGLLSXANSGPNTNGSQFFL 123
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 53/59 (89%)
Query: 194 CQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
CQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LS ANSGPNTNGSQFFL K +
Sbjct: 71 CQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLTCDKTD 129
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/60 (85%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGG+FT+ NGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 61 MCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 54/57 (94%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
MCQGG+FT+ NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT
Sbjct: 61 MCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/60 (81%), Positives = 54/60 (90%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQ GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT K +
Sbjct: 61 MCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 120
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 81/171 (47%), Gaps = 62/171 (36%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
+D+ + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP F+
Sbjct: 8 LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC----- 62
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
G F +H+ K G
Sbjct: 63 -----------------------------------------QAGDFTNHNGTGGKSIYGS 81
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCT 171
F + N F LKH GPGVLSMAN+GPNTNGSQFF+CT
Sbjct: 82 RFPDEN----------------FTLKHVGPGVLSMANAGPNTNGSQFFICT 116
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/60 (81%), Positives = 54/60 (90%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQ GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT K +
Sbjct: 62 MCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 121
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 81/171 (47%), Gaps = 62/171 (36%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
+D+ + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP F+
Sbjct: 9 LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC----- 63
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
G F +H+ K G
Sbjct: 64 -----------------------------------------QAGDFTNHNGTGGKSIYGS 82
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCT 171
F + N F LKH GPGVLSMAN+GPNTNGSQFF+CT
Sbjct: 83 RFPDEN----------------FTLKHVGPGVLSMANAGPNTNGSQFFICT 117
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/60 (81%), Positives = 54/60 (90%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQ GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT K +
Sbjct: 61 MCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 120
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 81/171 (47%), Gaps = 62/171 (36%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
+D+ + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP F+
Sbjct: 8 LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC----- 62
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
G F +H+ K G
Sbjct: 63 -----------------------------------------QAGDFTNHNGTGGKSIYGS 81
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCT 171
F + N F LKH GPGVLSMAN+GPNTNGSQFF+CT
Sbjct: 82 RFPDEN----------------FTLKHVGPGVLSMANAGPNTNGSQFFICT 116
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/60 (81%), Positives = 54/60 (90%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQ GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT K +
Sbjct: 60 MCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 119
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 81/171 (47%), Gaps = 62/171 (36%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
+D+ + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP F+
Sbjct: 7 LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC----- 61
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
G F +H+ K G
Sbjct: 62 -----------------------------------------QAGDFTNHNGTGGKSIYGS 80
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCT 171
F + N F LKH GPGVLSMAN+GPNTNGSQFF+CT
Sbjct: 81 RFPDEN----------------FTLKHVGPGVLSMANAGPNTNGSQFFICT 115
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 82/168 (48%), Gaps = 62/168 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
D+ ++ +GRI ++L D+VP+TA+NFR LC KG GY+GS+FHRIIP F+
Sbjct: 33 DVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFM------- 85
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
GG+ T H
Sbjct: 86 -------------VQGGDYTAH-------------------------------------- 94
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFL 169
NGTGG+SIYG KF DENF LKHT G+LSMAN G +TNGSQFF+
Sbjct: 95 ----NGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFI 138
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 47/60 (78%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
M QGGD+T HNGTGG+SIYG KF DENF LKHT G+LSMAN G +TNGSQFF+ K +
Sbjct: 85 MVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQ 144
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 82/171 (47%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
+I I + GRI +L + VP+TA+NFR L T + GFGY+ S FHR+IP F+
Sbjct: 8 NISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFM------- 60
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
GG+ TRH
Sbjct: 61 -------------LQGGDFTRH-------------------------------------- 69
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
NGTGGKSIYG KF DENF +KHT PG+LSMAN+G NTNGSQFF+ T
Sbjct: 70 ----NGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 116
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 48/57 (84%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
M QGGDFT HNGTGGKSIYG KF DENF +KHT PG+LSMAN+G NTNGSQFF+ T
Sbjct: 60 MLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 116
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 82/171 (47%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
+I I + GRI +L + VP+TA+NFR L T + GFGY+ S FHR+IP F+
Sbjct: 9 NISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFM------- 61
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
GG+ TRH
Sbjct: 62 -------------LQGGDFTRH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
NGTGGKSIYG KF DENF +KHT PG+LSMAN+G NTNGSQFF+ T
Sbjct: 71 ----NGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 117
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 48/57 (84%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
M QGGDFT HNGTGGKSIYG KF DENF +KHT PG+LSMAN+G NTNGSQFF+ T
Sbjct: 61 MLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 117
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 80/175 (45%), Gaps = 58/175 (33%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
DI I + GRI ++L D VP+TAENFR LCT EKG G G
Sbjct: 13 DISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGK----------------- 55
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
P+ Y H N M QGGD
Sbjct: 56 ----------------------------PLHYKSSVF----------HRVIPNFMIQGGD 77
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLK---HTGPGVLSMANSGPNTNGSQFFLCTTS 173
FT NGTGG+SIYG F DE+F K HTG G LSMAN+GPNTNGSQFF+CT +
Sbjct: 78 FTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFICTAA 132
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 46/60 (76%), Gaps = 3/60 (5%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILK---HTGPGVLSMANSGPNTNGSQFFLCTT 249
M QGGDFT NGTGG+SIYG F DE+F K HTG G LSMAN+GPNTNGSQFF+CT
Sbjct: 72 MIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFICTA 131
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/58 (81%), Positives = 51/58 (87%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
MCQGGDF +GTGGKSIYG KF+DENF L+H G GVLSMANSGPNTNGSQFF+CTTK
Sbjct: 68 MCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTK 125
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/60 (76%), Positives = 51/60 (85%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSIN 175
MCQGGDF +GTGGKSIYG KF+DENF L+H G GVLSMANSGPNTNGSQFF+CTT +
Sbjct: 68 MCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCD 127
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 41/53 (77%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI+IG + GRI ++LR D+VPRTAENFR LCT E+GFGY FHR+IP F+
Sbjct: 16 DIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFM 68
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 76/171 (44%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
D++IG + +GRI I L VP+TA NF L KG GY G
Sbjct: 12 DMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPG------------------ 53
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
S+F + DF M QGGD
Sbjct: 54 ---SKFHRVIADF-----------------------------------------MIQGGD 69
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
FT +GTGG+SIYG KF DENF LKH G G LSMAN+G +TNGSQFF+ T
Sbjct: 70 FTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTV 120
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 46/58 (79%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
M QGGDFT +GTGG+SIYG KF DENF LKH G G LSMAN+G +TNGSQFF+ T K
Sbjct: 64 MIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVK 121
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 74/171 (43%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
D++ Q +GR+ +L D+VP+TAENFR LCT EKGFGY GS FHR+IPDF+
Sbjct: 7 DVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFML------ 60
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
G F + + K GG
Sbjct: 61 ----------------------------------------QGGDFTAGNGTGGKSIYGGK 80
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
F + N F H PG+LSMAN+GPNTNGSQFF+ T
Sbjct: 81 FPDEN----------------FKKHHDRPGLLSMANAGPNTNGSQFFITTV 115
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 45/57 (78%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
M QGGDFT NGTGGKSIYG KF DENF H PG+LSMAN+GPNTNGSQFF+ T
Sbjct: 59 MLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTV 115
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/67 (70%), Positives = 52/67 (77%), Gaps = 2/67 (2%)
Query: 108 SHSSRI--NKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGS 165
SH R+ + M QGGDFT NGTGGKSIYG KF DENF LKH PG+LSMAN+GPNTNGS
Sbjct: 49 SHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGS 108
Query: 166 QFFLCTT 172
QFF+ T
Sbjct: 109 QFFITTV 115
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 47/57 (82%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
M QGGDFT NGTGGKSIYG KF DENF LKH PG+LSMAN+GPNTNGSQFF+ T
Sbjct: 59 MLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTV 115
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI +G I +L D+VP+TA NFR LCT EKGFGY GS FHR+IPDF+
Sbjct: 7 DITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFM 59
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Query: 87 IPLPMKYIRP-CLDCGSKGTFQSHSSRI--NKMCQGGDFTNHNGTGGKSIYGNKFEDENF 143
+P K R C +G +S RI N M QGGDFT NGTGG+SIYG+KF DENF
Sbjct: 33 VPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENF 92
Query: 144 VLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
KH G+LSMAN+GPNTNGSQFF+ T
Sbjct: 93 SRKHDKKGILSMANAGPNTNGSQFFITTA 121
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 46/57 (80%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
M QGGDFT NGTGG+SIYG+KF DENF KH G+LSMAN+GPNTNGSQFF+ T
Sbjct: 65 MIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTA 121
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 3 IKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+ + +VGRI L VP+TA+NFR LC G GY+ S+FHRIIP+F+
Sbjct: 14 VGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFM 65
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 47/58 (81%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
M QGGDFT +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T K
Sbjct: 70 MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVK 127
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 77/172 (44%), Gaps = 62/172 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
D++IG +++GR+ I L VP+T +N FV+ T +
Sbjct: 18 DLRIGDEDIGRVVIGLFGKTVPKTVDN------------------------FVALATGEK 53
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
+ SKF +R F M QGGD
Sbjct: 54 GFGYKDSKF--------HRVIKDF------------------------------MIQGGD 75
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTS 173
FT +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T
Sbjct: 76 FTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVK 127
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 77/172 (44%), Gaps = 62/172 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
D++IG +++GR+ I L VP+T +N FV+ T +
Sbjct: 18 DLRIGDEDIGRVVIGLFGKTVPKTVDN------------------------FVALATGEK 53
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
+ SKF +R F M QGGD
Sbjct: 54 GFGYKDSKF--------HRVIKDF------------------------------MIQGGD 75
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTS 173
FT +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T
Sbjct: 76 FTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVK 127
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 47/58 (81%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
M QGGDFT +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T K
Sbjct: 70 MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVK 127
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 47/58 (81%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
M QGGDFT +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T K
Sbjct: 63 MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVK 120
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 56/81 (69%), Gaps = 6/81 (7%)
Query: 97 CLDCGSKGTFQSHSSRINK-----MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPG 151
L G KG F +S+ ++ M QGGDFT +GTGGKSIYG +F DENF LKH GPG
Sbjct: 40 ALATGEKG-FGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPG 98
Query: 152 VLSMANSGPNTNGSQFFLCTT 172
+SMAN+G +TNGSQFF+ T
Sbjct: 99 WVSMANAGKDTNGSQFFITTV 119
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D++IG ++VGR+ L VP+T +NF L T EKGFGY+ S FHR+I DF+
Sbjct: 11 DLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFM 63
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 47/58 (81%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
M QGGDFT +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T K
Sbjct: 73 MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVK 130
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 56/81 (69%), Gaps = 6/81 (7%)
Query: 97 CLDCGSKGTFQSHSSRINK-----MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPG 151
L G KG F +S+ ++ M QGGDFT +GTGGKSIYG +F DENF LKH GPG
Sbjct: 50 ALATGEKG-FGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPG 108
Query: 152 VLSMANSGPNTNGSQFFLCTT 172
+SMAN+G +TNGSQFF+ T
Sbjct: 109 WVSMANAGKDTNGSQFFITTV 129
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D++IG ++VGR+ L VP+T +NF L T EKGFGY+ S FHR+I DF+
Sbjct: 21 DLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFM 73
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 46/57 (80%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
M QGGDF+N NGTGG+SIYG KFEDENF KH G+LSMAN+G NTNGSQFF+ T
Sbjct: 81 MIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTV 137
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 46/57 (80%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
M QGGDF+N NGTGG+SIYG KFEDENF KH G+LSMAN+G NTNGSQFF+ T
Sbjct: 81 MIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTV 137
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 8/61 (13%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPDF 53
D+ IG + VGRI ++L D+VP+TAENFR LCT EKG G ++G FHRII F
Sbjct: 21 DVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKF 80
Query: 54 V 54
+
Sbjct: 81 M 81
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 47/60 (78%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
M QGGDF NHNG+G SIYG KF+DENF +KH G+LSMANSGPNTNG QFF+ T K E
Sbjct: 122 MIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCE 181
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/56 (71%), Positives = 45/56 (80%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCT 171
M QGGDF NHNG+G SIYG KF+DENF +KH G+LSMANSGPNTNG QFF+ T
Sbjct: 122 MIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITT 177
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG-----FGYQGSSFHRIIPDFV 54
MDI +G +G+ +L ++VP+T+ENFR CT E GY+ + FHR+I +F+
Sbjct: 64 MDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFM 122
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 48/64 (75%)
Query: 109 HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFF 168
H N M QGGDFT +GTGG+SIYG F+DE FV+KH P V+SMAN GPNTNGSQFF
Sbjct: 65 HRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFF 124
Query: 169 LCTT 172
+ TT
Sbjct: 125 ITTT 128
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 46/57 (80%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
M QGGDFT +GTGG+SIYG F+DE F++KH P V+SMAN GPNTNGSQFF+ TT
Sbjct: 72 MIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTT 128
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
+D+ I GRI ++L D+ PRT NF LCT G G Y+GS+FHR+I +
Sbjct: 11 LDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKN 70
Query: 53 FV 54
F+
Sbjct: 71 FM 72
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 75/171 (43%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
D++IG ++VGRI I L +VP+T EN FV+ T +
Sbjct: 21 DVRIGDKDVGRIVIGLFGKVVPKTVEN------------------------FVALATGEK 56
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
+ SKF +R F M QGGD
Sbjct: 57 GYGYKGSKF--------HRVIKDF------------------------------MIQGGD 78
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
T +GTGG SIYG F DENF LKH G G +SMAN+GP+TNGSQFF+ T
Sbjct: 79 ITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 129
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 44/58 (75%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
M QGGD T +GTGG SIYG F DENF LKH G G +SMAN+GP+TNGSQFF+ TK
Sbjct: 73 MIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTK 130
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 45/54 (83%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFL 169
MCQGGD TN NG+GG+SIYG F DENF +KH PG+LSMAN+GPNTN SQFF+
Sbjct: 67 MCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 45/54 (83%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFL 246
MCQGGD TN NG+GG+SIYG F DENF +KH PG+LSMAN+GPNTN SQFF+
Sbjct: 67 MCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE------KGFGYQGSSFHRIIPDFV 54
DI I GRI +L D+ PRT ENFR LCT E K Y+ S FHRIIP F+
Sbjct: 9 DISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFM 67
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 46/57 (80%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
M QGGDFT +GTGG+SIYG+KF DENFV H P +LSMAN+GPNTNGSQFF+ T
Sbjct: 84 MIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTV 140
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
M QGGDFT +GTGG+SIYG+KF DENF+ H P +LSMAN+GPNTNGSQFF+ T
Sbjct: 84 MIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCP 143
Query: 253 ICVKLLDLLASLDAGWE-TRGVWKCHQWNG 281
+ + G E + + KC NG
Sbjct: 144 WLDGKHVVFGKVLEGMEVVKSIEKCGSQNG 173
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 39/60 (65%), Gaps = 7/60 (11%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDFV 54
DI IG+ GRIT++L D VP TAENFR LCT EKG G Y GS FHRIIP F+
Sbjct: 25 DISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFM 84
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 45/58 (77%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
M QGGDFT +GTGG SIYG F DENF LKH G G +SMAN+GP+TNGSQFF+ TK
Sbjct: 65 MIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTK 122
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 44/57 (77%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
M QGGDFT +GTGG SIYG F DENF LKH G G +SMAN+GP+TNGSQFF+ T
Sbjct: 65 MIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 121
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 41/53 (77%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D++IG ++VGRI I L ++VP+T ENF L T EKG+GY+GS FHR+I DF+
Sbjct: 13 DVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFM 65
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 44/54 (81%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFL 169
MCQGGD TN NG+GG+SIYG F DENF +KH PG+LSMAN+GPNTN SQF +
Sbjct: 67 MCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLI 120
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 44/54 (81%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFL 246
MCQGGD TN NG+GG+SIYG F DENF +KH PG+LSMAN+GPNTN SQF +
Sbjct: 67 MCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLI 120
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE------KGFGYQGSSFHRIIPDFV 54
DI I GRI +L D+ PRT ENFR LCT E K Y+ S FHRIIP F+
Sbjct: 9 DISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFM 67
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 109 HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFF 168
H N M QGGDFTN +GTGGKSIYG KF DEN +KH G LSMAN+GPNTNGSQFF
Sbjct: 62 HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFF 120
Query: 169 LCTT 172
+ T
Sbjct: 121 ITTA 124
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 45/57 (78%), Gaps = 1/57 (1%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
M QGGDFTN +GTGGKSIYG KF DEN +KH G LSMAN+GPNTNGSQFF+ T
Sbjct: 69 MIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D+ I + +GRITI L P T ENFR LCT E GFGY+ S FHR+I +F+
Sbjct: 17 DVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFM 69
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 109 HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFF 168
H N M QGGDFTN +GTGGKSIYG KF DEN +KH G LSMAN+GPNTNGSQFF
Sbjct: 62 HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFF 120
Query: 169 LCTT 172
+ T
Sbjct: 121 ITTA 124
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 45/57 (78%), Gaps = 1/57 (1%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
M QGGDFTN +GTGGKSIYG KF DEN +KH G LSMAN+GPNTNGSQFF+ T
Sbjct: 69 MIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D+ I + +GRITI L P T ENFR LCT E GFGY+ S FHR+I +F+
Sbjct: 17 DVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFM 69
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 52/72 (72%), Gaps = 2/72 (2%)
Query: 101 GSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP 160
G KG+ R N M QGGDFTN +GTGGKSIYG +F+DEN +KH G +SMAN+GP
Sbjct: 49 GYKGSIFHRVIR-NFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGP 106
Query: 161 NTNGSQFFLCTT 172
N+NGSQFF+ T
Sbjct: 107 NSNGSQFFVTTA 118
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
M QGGDFTN +GTGGKSIYG +F+DEN +KH G +SMAN+GPN+NGSQFF+ T
Sbjct: 63 MIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTA 118
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI IG + VGR+ I L + VP+T ENF+ L + E GFGY+GS FHR+I +F+
Sbjct: 11 DITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFM 63
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 44/58 (75%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
M QGGDF N +GTG SIY F DENF L+H+ PG+LSMANSGP+TNG QFF+ +K
Sbjct: 73 MIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSK 130
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 42/54 (77%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFL 169
M QGGDF N +GTG SIY F DENF L+H+ PG+LSMANSGP+TNG QFF+
Sbjct: 73 MIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFI 126
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 57/99 (57%), Gaps = 11/99 (11%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-----KGFGYQGSSFHRIIPDFV-- 54
D+ IG QEVGR+ I+L D+VP+TAENFR CT E GY+GS+FHR+I DF+
Sbjct: 16 DVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQ 75
Query: 55 --SFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPM 91
F+ + + S +R FA + RHS P L M
Sbjct: 76 GGDFVNGDGTGVA--SIYRGPFADENFKLRHSAPGLLSM 112
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 45/63 (71%)
Query: 109 HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFF 168
H N M QGGDF+ NG GG+SIYG F+DENF+LKH +LSMAN G +TNGSQFF
Sbjct: 78 HRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFF 137
Query: 169 LCT 171
+ T
Sbjct: 138 ITT 140
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 43/56 (76%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCT 248
M QGGDF+ NG GG+SIYG F+DENFILKH +LSMAN G +TNGSQFF+ T
Sbjct: 85 MIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITT 140
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 8/61 (13%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPDF 53
DI+I ++ VGRI QL D+ P+T +NF CLC+ EKG G Y+GS+FHR++ +F
Sbjct: 25 DIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNF 84
Query: 54 V 54
+
Sbjct: 85 M 85
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 12/87 (13%)
Query: 97 CLDCGSKGTFQS------------HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFV 144
CL G KGT +S H + M QGGDF+ NG GG+SIYG FEDE+F
Sbjct: 61 CLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFA 120
Query: 145 LKHTGPGVLSMANSGPNTNGSQFFLCT 171
+KH +LSMAN G +TNGSQFF+ T
Sbjct: 121 VKHNAAFLLSMANRGKDTNGSQFFITT 147
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 42/56 (75%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCT 248
M QGGDF+ NG GG+SIYG FEDE+F +KH +LSMAN G +TNGSQFF+ T
Sbjct: 92 MVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITT 147
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPDF 53
DI I Q GR+ +L D+ P+T ENFRCLCT EKG G Y+ FHR++ DF
Sbjct: 32 DIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDF 91
Query: 54 V 54
+
Sbjct: 92 M 92
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 12/87 (13%)
Query: 97 CLDCGSKGTFQS------------HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFV 144
CL G KGT +S H + M QGGDF+ NG GG+SIYG FEDE+F
Sbjct: 44 CLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFA 103
Query: 145 LKHTGPGVLSMANSGPNTNGSQFFLCT 171
+KH +LSMAN G +TNGSQFF+ T
Sbjct: 104 VKHNKEFLLSMANRGKDTNGSQFFITT 130
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 42/56 (75%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCT 248
M QGGDF+ NG GG+SIYG FEDE+F +KH +LSMAN G +TNGSQFF+ T
Sbjct: 75 MVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPDF 53
DI I Q GR+ +L D+ P+T ENFRCLCT EKG G Y+ FHR++ DF
Sbjct: 15 DIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDF 74
Query: 54 V 54
+
Sbjct: 75 M 75
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 12/87 (13%)
Query: 97 CLDCGSKGTFQS------------HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFV 144
CL G KGT +S H + M QGGDF+ NG GG+SIYG FEDE+F
Sbjct: 44 CLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFA 103
Query: 145 LKHTGPGVLSMANSGPNTNGSQFFLCT 171
+KH +LSMAN G +TNGSQFF+ T
Sbjct: 104 VKHNKEFLLSMANRGKDTNGSQFFITT 130
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 42/56 (75%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCT 248
M QGGDF+ NG GG+SIYG FEDE+F +KH +LSMAN G +TNGSQFF+ T
Sbjct: 75 MVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPDF 53
DI I Q GR+ +L D+ P+T ENFRCLCT EKG G Y+ FHR++ DF
Sbjct: 15 DIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDF 74
Query: 54 V 54
+
Sbjct: 75 M 75
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 109 HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQF 167
H N + QGGD T G GGKSIYG FEDE N LKHTG G+LSM+N+GPNTN SQF
Sbjct: 81 HRVIPNFVIQGGDPTG-TGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQF 139
Query: 168 FL 169
F+
Sbjct: 140 FI 141
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFL 246
+ QGGD T G GGKSIYG FEDE N LKHTG G+LSM+N+GPNTN SQFF+
Sbjct: 88 VIQGGDPTG-TGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFI 141
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+G ++L + P+T NF LC E GF Y + FHR+IP+FV
Sbjct: 47 LGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFV 88
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 53/94 (56%), Gaps = 16/94 (17%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
M QGGD T G GG SIYG +FEDE + LK TG G+L+MAN+GP+TNGSQFF+
Sbjct: 61 MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119
Query: 175 N----KHXXXXXXXIFLTRFTQMCQGGDFTNHNG 204
KH T F ++CQG N G
Sbjct: 120 QWLDGKH----------TIFGRVCQGIGMVNRVG 143
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
M QGGD T G GG SIYG +FEDE + LK TG G+L+MAN+GP+TNGSQFF+
Sbjct: 61 MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119
Query: 252 E 252
+
Sbjct: 120 Q 120
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+G I ++L + P+T +NF L +G+ Y G+ FHRII DF+
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFM 61
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 53/94 (56%), Gaps = 16/94 (17%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
M QGGD T G GG SIYG +FEDE + LK TG G+L+MAN+GP+TNGSQFF+
Sbjct: 61 MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119
Query: 175 N----KHXXXXXXXIFLTRFTQMCQGGDFTNHNG 204
KH T F ++CQG N G
Sbjct: 120 QWLDGKH----------TIFGRVCQGIGMVNRVG 143
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFL 246
M QGGD T G GG SIYG +FEDE + LK TG G+L+MAN+GP+TNGSQFF+
Sbjct: 61 MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+G I ++L + P+T +NF L +G+ Y G+ FHRII DF+
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFM 61
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 53/94 (56%), Gaps = 16/94 (17%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
M QGGD T G GG SIYG +FEDE + LK TG G+L+MAN+GP+TNGSQFF+
Sbjct: 61 MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119
Query: 175 N----KHXXXXXXXIFLTRFTQMCQGGDFTNHNG 204
KH T F ++CQG N G
Sbjct: 120 QWLDGKH----------TIFGRVCQGIGMVNRVG 143
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
M QGGD T G GG SIYG +FEDE + LK TG G+L+MAN+GP+TNGSQFF+
Sbjct: 61 MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119
Query: 252 E 252
+
Sbjct: 120 Q 120
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+G I ++L + P+T +NF L +G+ Y G+ FHRII DF+
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFM 61
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 51/81 (62%), Gaps = 9/81 (11%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
M Q GD T G GG SI+G KFEDE + LKH GV+SMAN+GPNTNGSQFF+ KQ
Sbjct: 56 MVQTGDPTG-TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQ 114
Query: 252 E-------ICVKLLDLLASLD 265
+ K++D L +LD
Sbjct: 115 PHLDMKYTVFGKVIDGLETLD 135
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFL 169
M Q GD T G GG SI+G KFEDE + LKH GV+SMAN+GPNTNGSQFF+
Sbjct: 56 MVQTGDPTG-TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFI 109
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 9 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+VG I I++ + P+T ENF LC Y G FHR I F+
Sbjct: 14 DVGDIKIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFM 56
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 51/81 (62%), Gaps = 9/81 (11%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
M Q GD T G GG SI+G KFEDE + LKH GV+SMAN+GPNTNGSQFF+ KQ
Sbjct: 50 MVQTGDPTG-TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQ 108
Query: 252 E-------ICVKLLDLLASLD 265
+ K++D L +LD
Sbjct: 109 PHLDMKYTVFGKVIDGLETLD 129
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFL 169
M Q GD T G GG SI+G KFEDE + LKH GV+SMAN+GPNTNGSQFF+
Sbjct: 50 MVQTGDPTG-TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFI 103
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 9 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+VG I I++ + P+T ENF LC Y G FHR I F+
Sbjct: 8 DVGDIKIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFM 50
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 44/58 (75%), Gaps = 2/58 (3%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFV-LKHTGPGVLSMANSGPNTNGSQFFLCTT 172
M Q GD + +GTGG+SI+GN+FEDE F L H+ P ++SMAN GPNTNGSQFF+ T
Sbjct: 55 MVQTGDPSG-DGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTV 111
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 44/58 (75%), Gaps = 2/58 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFI-LKHTGPGVLSMANSGPNTNGSQFFLCTT 249
M Q GD + +GTGG+SI+GN+FEDE F L H+ P ++SMAN GPNTNGSQFF+ T
Sbjct: 55 MVQTGDPSG-DGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTV 111
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 85 FPIPLPMKYIRPCLDCGSKGTFQSHS-SRINK--MCQGGDFTNHNGTGGKSIYGNKFEDE 141
FP+ P C+ G + H+ RI K M Q GD T G GG+SI+G +FEDE
Sbjct: 38 FPVECPKTVENFCVHS-RNGYYNGHTFHRIIKGFMIQTGDPTG-TGMGGESIWGGEFEDE 95
Query: 142 -NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKH 177
+ L+H P LSMAN+G NTNGSQFF+ NKH
Sbjct: 96 FHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKH 136
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
M Q GD T G GG+SI+G +FEDE + L+H P LSMAN+G NTNGSQFF+
Sbjct: 71 MIQTGDPTG-TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVV 127
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D I +G I +L P+T ENF C H + Y G +FHRII F+
Sbjct: 22 DSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFM 71
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 6/64 (9%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFV-LKHTGPGVLSMANSG----PNTNGSQFFLC 170
+ QGGD T G GG+SIYG F+DE + LK+ G+LSMA+ G PNTNGSQFF+
Sbjct: 66 IIQGGDPTG-TGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFIT 124
Query: 171 TTSI 174
+S+
Sbjct: 125 YSSL 128
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFI-LKHTGPGVLSMANSG----PNTNGSQFFLC 247
+ QGGD T G GG+SIYG F+DE + LK+ G+LSMA+ G PNTNGSQFF+
Sbjct: 66 IIQGGDPTG-TGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFIT 124
Query: 248 TTKQEICVKLLDLLASLDAGWET 270
+ + L G+ET
Sbjct: 125 YSSLPQLNGEYVIFGKLIDGFET 147
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 93 YIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPG 151
+I+ CL+ T H + QGGD T G+GG+SIYG F+DE + L+ G
Sbjct: 52 FIQLCLEAYYDNTI-FHRVVPGFIVQGGDPTG-TGSGGESIYGAPFKDEFHSRLRFNRRG 109
Query: 152 VLSMANSGPNTNGSQFFL 169
+++MAN+G + NGSQFF
Sbjct: 110 LVAMANAGSHDNGSQFFF 127
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
+ QGGD T G+GG+SIYG F+DE + L+ G+++MAN+G + NGSQFF +
Sbjct: 74 IVQGGDPTG-TGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRA 132
Query: 252 E 252
+
Sbjct: 133 D 133
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
K G I I+L P+ NF LC Y + FHR++P F+
Sbjct: 30 KTTAGDIDIELWSKEAPKACRNFIQLCLEAY---YDNTIFHRVVPGFI 74
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 131 KSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFL 169
+S +G F+DE L HTG G+LSMANSGPN+N SQFF+
Sbjct: 83 ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFI 122
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 208 KSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFL 246
+S +G F+DE L HTG G+LSMANSGPN+N SQFF+
Sbjct: 83 ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFI 122
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
G + ++L DL P+T ENF LC K Y G+ FHR I +FV
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFV 69
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
M QGGD T G + ++F E L+ P +L+MAN+GP TNGSQFF+ K
Sbjct: 88 MIQGGDPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGK 142
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCT 171
M QGGD T G + ++F E L+ P +L+MAN+GP TNGSQFF+
Sbjct: 88 MIQGGDPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITV 140
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 135 GNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFL----CTTSINKH 177
G FEDE + L H G GVLSMAN G ++N S+FF+ C NKH
Sbjct: 86 GAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKH 133
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 212 GNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFL 246
G FEDE + L H G GVLSMAN G ++N S+FF+
Sbjct: 86 GAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFI 121
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
G IT++L D P TA NF K Y G+ FHR+I F+
Sbjct: 9 GTITLKLFADKAPETAANFEQYV---KDGHYDGTIFHRVIDGFM 49
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
G I ++L P+T ENF L +KG Y G+ FHR+I F+
Sbjct: 13 GVIKLELDEAKAPKTVENF--LNYVKKGH-YDGTIFHRVINGFM 53
>pdb|1UZG|A Chain A, Crystal Structure Of The Dengue Type 3 Virus Envelope
Protein
pdb|1UZG|B Chain B, Crystal Structure Of The Dengue Type 3 Virus Envelope
Protein
Length = 392
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 95 RPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNG-----TGGKSIYGNKFEDENFVLKHT 148
+P LD + T + + + K+C G TN T G++I + +D+N+V KHT
Sbjct: 38 KPTLDIELQKTEATQLATLRKLCIEGKITNITTDSRCPTQGEAILPEE-QDQNYVCKHT 95
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLC 33
MDI + + +GR+ I+L D P ENF L
Sbjct: 19 MDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLT 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,799,754
Number of Sequences: 62578
Number of extensions: 438417
Number of successful extensions: 965
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 206
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)