Query psy13279
Match_columns 287
No_of_seqs 195 out of 2227
Neff 6.7
Searched_HMMs 46136
Date Sat Aug 17 00:42:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546|consensus 100.0 7.9E-46 1.7E-50 343.5 11.4 144 1-284 13-177 (372)
2 KOG0880|consensus 100.0 3.4E-44 7.4E-49 308.1 11.1 144 1-284 44-201 (217)
3 COG0652 PpiB Peptidyl-prolyl c 100.0 2.5E-39 5.3E-44 274.1 9.2 122 4-270 2-126 (158)
4 KOG0879|consensus 100.0 4E-39 8.6E-44 262.0 8.2 144 1-284 15-176 (177)
5 KOG0111|consensus 100.0 3.5E-39 7.5E-44 281.5 7.9 144 1-284 141-296 (298)
6 KOG0881|consensus 100.0 1.2E-38 2.7E-43 256.4 6.1 124 4-270 12-136 (164)
7 cd01926 cyclophilin_ABH_like c 100.0 1.3E-36 2.7E-41 260.5 12.7 142 1-283 5-164 (164)
8 PTZ00060 cyclophilin; Provisio 100.0 4.7E-36 1E-40 261.3 11.9 143 1-284 20-181 (183)
9 PLN03149 peptidyl-prolyl isome 100.0 7E-36 1.5E-40 260.8 11.3 144 1-284 23-185 (186)
10 cd01927 cyclophilin_WD40 cyclo 100.0 5E-36 1.1E-40 252.8 10.0 123 5-270 1-124 (148)
11 PTZ00221 cyclophilin; Provisio 100.0 2E-35 4.3E-40 267.0 12.5 141 1-285 57-219 (249)
12 cd01928 Cyclophilin_PPIL3_like 100.0 4.8E-35 1.1E-39 248.1 11.2 123 5-270 4-127 (153)
13 cd01922 cyclophilin_SpCYP2_lik 100.0 4E-35 8.6E-40 246.8 10.4 122 6-270 2-124 (146)
14 cd01923 cyclophilin_RING cyclo 100.0 6.5E-35 1.4E-39 248.8 11.5 124 4-270 2-126 (159)
15 KOG0882|consensus 100.0 6.6E-35 1.4E-39 276.0 6.7 125 3-270 406-531 (558)
16 cd01921 cyclophilin_RRM cyclop 100.0 3.8E-34 8.2E-39 245.6 10.6 130 5-270 1-132 (166)
17 KOG0883|consensus 100.0 2.6E-34 5.7E-39 267.5 5.3 122 6-270 282-404 (518)
18 cd01925 cyclophilin_CeCYP16-li 100.0 5.4E-33 1.2E-37 239.6 11.1 123 4-270 8-131 (171)
19 KOG0884|consensus 100.0 1.9E-33 4.2E-38 225.2 6.8 121 7-270 6-127 (161)
20 cd01924 cyclophilin_TLP40_like 100.0 2.4E-32 5.2E-37 236.6 11.2 142 7-270 3-158 (176)
21 PRK10791 peptidyl-prolyl cis-t 100.0 8.1E-32 1.7E-36 230.8 10.0 122 4-270 2-132 (164)
22 cd01920 cyclophilin_EcCYP_like 100.0 1.2E-31 2.7E-36 227.7 10.5 120 6-270 2-127 (155)
23 PRK10903 peptidyl-prolyl cis-t 100.0 1.9E-31 4.1E-36 233.5 10.3 122 4-270 31-158 (190)
24 KOG0865|consensus 100.0 9.9E-32 2.1E-36 229.5 7.1 134 1-270 8-141 (167)
25 cd00317 cyclophilin cyclophili 100.0 4.7E-29 1E-33 208.7 10.1 121 6-270 2-123 (146)
26 KOG0885|consensus 100.0 2.7E-29 5.9E-34 233.1 7.5 119 4-265 15-134 (439)
27 KOG0415|consensus 100.0 1.1E-28 2.4E-33 227.8 7.8 130 5-270 4-135 (479)
28 PF00160 Pro_isomerase: Cyclop 99.9 1.6E-27 3.5E-32 201.2 11.1 124 6-270 4-131 (155)
29 KOG0546|consensus 99.7 7.3E-18 1.6E-22 157.4 3.5 66 126-191 84-153 (372)
30 KOG0111|consensus 99.7 1.5E-17 3.2E-22 146.1 3.5 70 132-201 210-283 (298)
31 KOG0880|consensus 99.7 2.5E-17 5.5E-22 142.3 4.1 65 128-192 110-178 (217)
32 KOG0881|consensus 99.6 1.7E-16 3.7E-21 128.4 0.8 63 129-191 71-138 (164)
33 KOG0879|consensus 99.6 2.5E-15 5.4E-20 123.0 3.9 62 130-191 87-152 (177)
34 KOG0883|consensus 99.5 2.2E-14 4.7E-19 134.8 3.9 70 126-195 336-410 (518)
35 COG0652 PpiB Peptidyl-prolyl c 99.5 3E-14 6.5E-19 121.1 3.5 61 138-198 68-135 (158)
36 KOG0865|consensus 99.4 7.2E-14 1.6E-18 119.7 4.3 69 129-197 77-149 (167)
37 KOG0882|consensus 99.4 1.6E-13 3.4E-18 131.3 4.2 73 126-198 463-540 (558)
38 KOG0884|consensus 99.4 2.2E-13 4.9E-18 109.8 3.4 63 129-191 62-129 (161)
39 cd01926 cyclophilin_ABH_like c 99.4 3.6E-13 7.7E-18 115.4 4.2 64 134-197 81-148 (164)
40 PTZ00060 cyclophilin; Provisio 99.3 6.3E-13 1.4E-17 115.9 4.3 65 134-198 97-165 (183)
41 PLN03149 peptidyl-prolyl isome 99.3 8.4E-13 1.8E-17 115.5 3.9 64 134-197 99-167 (186)
42 KOG0885|consensus 99.1 4.9E-11 1.1E-15 111.9 4.8 56 129-184 74-134 (439)
43 cd01924 cyclophilin_TLP40_like 99.1 6.5E-11 1.4E-15 102.7 4.9 57 140-196 96-165 (176)
44 cd01927 cyclophilin_WD40 cyclo 99.1 5.3E-11 1.2E-15 100.4 2.7 63 135-197 65-132 (148)
45 PTZ00221 cyclophilin; Provisio 99.1 5.4E-11 1.2E-15 108.1 2.6 63 135-197 134-200 (249)
46 cd01922 cyclophilin_SpCYP2_lik 99.0 8.7E-11 1.9E-15 98.9 2.3 62 135-196 65-131 (146)
47 cd01928 Cyclophilin_PPIL3_like 99.0 1.4E-10 3.1E-15 98.3 3.1 64 134-197 67-135 (153)
48 cd01923 cyclophilin_RING cyclo 99.0 1.2E-10 2.6E-15 99.4 2.6 65 133-197 65-134 (159)
49 KOG0415|consensus 99.0 1.5E-10 3.3E-15 108.1 3.1 55 137-191 77-137 (479)
50 PRK10903 peptidyl-prolyl cis-t 99.0 4.5E-10 9.8E-15 98.6 3.7 61 137-197 96-166 (190)
51 cd01921 cyclophilin_RRM cyclop 98.9 4.7E-10 1E-14 96.3 2.5 61 136-196 73-139 (166)
52 cd01925 cyclophilin_CeCYP16-li 98.8 1E-08 2.2E-13 88.6 5.2 52 133-184 71-127 (171)
53 cd01920 cyclophilin_EcCYP_like 98.7 6E-09 1.3E-13 88.5 1.7 60 138-197 66-135 (155)
54 PRK10791 peptidyl-prolyl cis-t 98.6 1.9E-08 4.1E-13 86.3 1.8 58 139-196 69-139 (164)
55 cd00317 cyclophilin cyclophili 98.6 2.5E-08 5.3E-13 83.2 2.1 62 137-198 66-132 (146)
56 PF00160 Pro_isomerase: Cyclop 98.3 3.6E-07 7.8E-12 76.9 1.9 60 137-196 72-138 (155)
57 PRK00969 hypothetical protein; 94.7 0.26 5.6E-06 49.2 10.1 45 224-271 257-301 (508)
58 TIGR03268 methan_mark_3 putati 93.0 0.89 1.9E-05 45.4 10.3 54 212-271 244-298 (503)
59 TIGR03268 methan_mark_3 putati 74.2 14 0.00031 37.0 7.9 58 135-197 244-304 (503)
60 PRK00969 hypothetical protein; 69.7 19 0.00042 36.2 7.7 58 135-197 247-307 (508)
61 PF12903 DUF3830: Protein of u 55.8 14 0.00031 31.2 3.5 33 12-50 9-41 (147)
62 COG4070 Predicted peptidyl-pro 50.2 77 0.0017 31.2 7.8 59 135-197 246-307 (512)
63 COG4070 Predicted peptidyl-pro 45.6 16 0.00034 35.8 2.4 22 12-33 377-398 (512)
No 1
>KOG0546|consensus
Probab=100.00 E-value=7.9e-46 Score=343.54 Aligned_cols=144 Identities=53% Similarity=0.851 Sum_probs=134.4
Q ss_pred CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCc--------eecCceeEEeccCcccccccccccccccccccc
Q psy13279 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF--------GYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRF 72 (287)
Q Consensus 1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~--------~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~ 72 (287)
|||+|++.+.|||+||||.|.+|+||+||++||+|+.|. +|+|+.|||||++|
T Consensus 13 fDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~F------------------- 73 (372)
T KOG0546|consen 13 FDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNF------------------- 73 (372)
T ss_pred EEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecc-------------------
Confidence 799999999999999999999999999999999999984 59999999999999
Q ss_pred ccccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCc
Q psy13279 73 DFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGV 152 (287)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~ 152 (287)
||||||++.
T Consensus 74 -------------------------------------------MiQgGDfs~---------------------------- 82 (372)
T KOG0546|consen 74 -------------------------------------------MIQGGDFSE---------------------------- 82 (372)
T ss_pred -------------------------------------------eeecccccc----------------------------
Confidence 888888765
Q ss_pred eeccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhh
Q psy13279 153 LSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSM 232 (287)
Q Consensus 153 l~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsM 232 (287)
++|+||+||||..|+||++.++|+++++|||
T Consensus 83 -------------------------------------------------gnGtGGeSIYG~~FdDEnF~lKHdrpflLSM 113 (372)
T KOG0546|consen 83 -------------------------------------------------GNGTGGESIYGEKFDDENFELKHDRPFLLSM 113 (372)
T ss_pred -------------------------------------------------CCCCCcccccccccccccceeccCcchhhhh
Confidence 2567788888888999999999999999999
Q ss_pred hhcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279 233 ANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE 284 (287)
Q Consensus 233 A~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge 284 (287)
||.||||||||||||+.++|||||+|.|||+||.|++| +|+.+| .|+.|||
T Consensus 114 AN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV-~I~dCGe 177 (372)
T KOG0546|consen 114 ANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADV-VISDCGE 177 (372)
T ss_pred hcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccce-Eeccccc
Confidence 99999999999999999999999999999999999984 699999 9999997
No 2
>KOG0880|consensus
Probab=100.00 E-value=3.4e-44 Score=308.06 Aligned_cols=144 Identities=55% Similarity=0.902 Sum_probs=134.0
Q ss_pred CceEECceEeeEEEEEEeCCCChHHHHHHHHHHc-cCCCceecCceeEEeccCccccccccccccccccccccccccCCC
Q psy13279 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCT-HEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGN 79 (287)
Q Consensus 1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~-~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 79 (287)
|||.+++.+.|||+|+||++.+|+||+||++||+ +.+++||.++.||||||+|
T Consensus 44 fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nf-------------------------- 97 (217)
T KOG0880|consen 44 FDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNF-------------------------- 97 (217)
T ss_pred EEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCc--------------------------
Confidence 6999999999999999999999999999999999 8899999999999999999
Q ss_pred CccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccC
Q psy13279 80 RTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSG 159 (287)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~ 159 (287)
||||||++.
T Consensus 98 ------------------------------------mIQGGd~t~----------------------------------- 106 (217)
T KOG0880|consen 98 ------------------------------------MIQGGDFTK----------------------------------- 106 (217)
T ss_pred ------------------------------------eeecCcccc-----------------------------------
Confidence 888888765
Q ss_pred CCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCC
Q psy13279 160 PNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNT 239 (287)
Q Consensus 160 ~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s 239 (287)
++|+|+.||||..|+|||++++|+++|+|||||++|++
T Consensus 107 ------------------------------------------g~gtGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDt 144 (217)
T KOG0880|consen 107 ------------------------------------------GDGTGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDT 144 (217)
T ss_pred ------------------------------------------CCCCCCeEeecCCCCCccceeecCCCceEeeeccCCCC
Confidence 25667777888889999999999999999999999999
Q ss_pred CCceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279 240 NGSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE 284 (287)
Q Consensus 240 ~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge 284 (287)
||||||||+.+++||||+|+|||+|++|||+ +|++.+ +|++|||
T Consensus 145 NGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v-~I~~~g~ 201 (217)
T KOG0880|consen 145 NGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDV-VIANCGE 201 (217)
T ss_pred CCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccE-EEeecCc
Confidence 9999999999999999999999999999994 888999 9999996
No 3
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-39 Score=274.10 Aligned_cols=122 Identities=44% Similarity=0.734 Sum_probs=107.0
Q ss_pred EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279 4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH 83 (287)
Q Consensus 4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (287)
.+++|+.|+|+||||++.||+||+||++|| +.+| |+|+.|||||++|
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~--~~g~-Ydg~~FHRVi~~F------------------------------ 48 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLV--KEGF-YDGTIFHRVIPGF------------------------------ 48 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHH--HcCC-CCCceEEEeecCc------------------------------
Confidence 578999999999999999999999999999 8999 9999999999999
Q ss_pred CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279 84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN 163 (287)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~ 163 (287)
||||||+...+++++.
T Consensus 49 --------------------------------miQgGd~~~~~g~gg~-------------------------------- 64 (158)
T COG0652 49 --------------------------------MIQGGDPTGGDGTGGP-------------------------------- 64 (158)
T ss_pred --------------------------------eeecCCCCCCCCCCCC--------------------------------
Confidence 9999998764344433
Q ss_pred CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCc--hhhhhhhhcC-CCCC
Q psy13279 164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTG--PGVLSMANSG-PNTN 240 (287)
Q Consensus 164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~--~G~lsMA~~~-p~s~ 240 (287)
+++|++|+....|++ +|+|||||++ ||||
T Consensus 65 ------------------------------------------------~~~f~~E~~~~~~~~~~~G~lsMA~~g~P~t~ 96 (158)
T COG0652 65 ------------------------------------------------GPPFKDENFALNGDRHKRGTLSMARAGDPNSN 96 (158)
T ss_pred ------------------------------------------------CCCCcccccccccccCCcceEeEcccCCcCCc
Confidence 234555555444544 9999999999 9999
Q ss_pred CceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279 241 GSQFFLCTTKQEICVKLLDLLASLDAGWET 270 (287)
Q Consensus 241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv 270 (287)
+||||||+.++||||++|||||+|++|||+
T Consensus 97 ~SQFFI~~~~~~~Ld~~ytVFG~Vv~Gmdv 126 (158)
T COG0652 97 GSQFFITVVDNPFLDGKYTVFGQVVEGMDV 126 (158)
T ss_pred cCeEEEEecCCcccCCCCcEEEEEehhHHH
Confidence 999999999999999999999999999997
No 4
>KOG0879|consensus
Probab=100.00 E-value=4e-39 Score=261.99 Aligned_cols=144 Identities=50% Similarity=0.822 Sum_probs=127.6
Q ss_pred CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCC-----CceecCceeEEeccCccccccccccccccccccccccc
Q psy13279 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK-----GFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFA 75 (287)
Q Consensus 1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~-----g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~ 75 (287)
|||+|++++.|||.||||.|.+|+|++||+..|+|+- -.||+++.|||||++|
T Consensus 15 ~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdF---------------------- 72 (177)
T KOG0879|consen 15 FDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDF---------------------- 72 (177)
T ss_pred EEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhh----------------------
Confidence 6999999999999999999999999999999999873 3679999999999999
Q ss_pred cCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceec
Q psy13279 76 AGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSM 155 (287)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~m 155 (287)
||||||+.+.
T Consensus 73 ----------------------------------------MiQgGDFv~g------------------------------ 82 (177)
T KOG0879|consen 73 ----------------------------------------MIQGGDFVNG------------------------------ 82 (177)
T ss_pred ----------------------------------------eeccCceecC------------------------------
Confidence 8888887653
Q ss_pred cccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhc
Q psy13279 156 ANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANS 235 (287)
Q Consensus 156 a~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~ 235 (287)
+|+|..|||+.+|.||++.++|+.+|+|||||+
T Consensus 83 -----------------------------------------------DGtG~~sIy~~~F~DENFtlkH~~PGlLSMANs 115 (177)
T KOG0879|consen 83 -----------------------------------------------DGTGVASIYGSTFPDENFTLKHDGPGLLSMANS 115 (177)
T ss_pred -----------------------------------------------CCceEEEEcCCCCCCcceeeecCCCceeecccc
Confidence 455556777888889999999999999999999
Q ss_pred CCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279 236 GPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE 284 (287)
Q Consensus 236 ~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge 284 (287)
++++|++|||||..+++|||++|.|||||++||.+ +|-.++ .|..|||
T Consensus 116 G~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v-~i~qCGe 176 (177)
T KOG0879|consen 116 GKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPV-VIVQCGE 176 (177)
T ss_pred CCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcE-EEeeccc
Confidence 99999999999999999999999999999999984 444556 6677776
No 5
>KOG0111|consensus
Probab=100.00 E-value=3.5e-39 Score=281.47 Aligned_cols=144 Identities=64% Similarity=1.049 Sum_probs=128.8
Q ss_pred CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR 80 (287)
Q Consensus 1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
|||+|.+...|||+++|..|..|.|++||++||+|++||||+|+.||||||.|
T Consensus 141 ~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~f--------------------------- 193 (298)
T KOG0111|consen 141 HDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKF--------------------------- 193 (298)
T ss_pred hheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhh---------------------------
Confidence 68999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279 81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP 160 (287)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~ 160 (287)
|+||||+++++|+
T Consensus 194 -----------------------------------mcqggdftn~ngt-------------------------------- 206 (298)
T KOG0111|consen 194 -----------------------------------MCQGGDFTNGNGT-------------------------------- 206 (298)
T ss_pred -----------------------------------hccCCccccCCCC--------------------------------
Confidence 8888887775444
Q ss_pred CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCCC
Q psy13279 161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN 240 (287)
Q Consensus 161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s~ 240 (287)
||.||||..|+||++.++|.-+|+|||||+++|+|
T Consensus 207 ---------------------------------------------ggksiygkkfddenf~lkht~pgtlsmansgantn 241 (298)
T KOG0111|consen 207 ---------------------------------------------GGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTN 241 (298)
T ss_pred ---------------------------------------------CCcccccccccccceeeecCCCceeeccccCCCCC
Confidence 45556666677777777777899999999999999
Q ss_pred CceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCCC
Q psy13279 241 GSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCGE 284 (287)
Q Consensus 241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~ge 284 (287)
+||||||+.+++|||++|.|||.|++||+| .|-+++ .|..|||
T Consensus 242 gsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~qkv-~i~~cge 296 (298)
T KOG0111|consen 242 GSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQQKV-KIVECGE 296 (298)
T ss_pred CceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcceEE-EEEeccc
Confidence 999999999999999999999999999995 566777 8888887
No 6
>KOG0881|consensus
Probab=100.00 E-value=1.2e-38 Score=256.37 Aligned_cols=124 Identities=49% Similarity=0.811 Sum_probs=113.5
Q ss_pred EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279 4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH 83 (287)
Q Consensus 4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (287)
...+|+.|.|++|||-+.||+||+||.+|+ ++|| |+|+.|||||++|
T Consensus 12 V~LeTsmG~i~~ElY~kHaP~TC~NF~eLa--rrgY-Yn~v~FHRii~DF------------------------------ 58 (164)
T KOG0881|consen 12 VTLETSMGKITLELYWKHAPRTCQNFAELA--RRGY-YNGVIFHRIIKDF------------------------------ 58 (164)
T ss_pred EEEeecccceehhhhhhcCcHHHHHHHHHH--hccc-ccceeeeehhhhh------------------------------
Confidence 356899999999999999999999999999 9999 9999999999999
Q ss_pred CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279 84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN 163 (287)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~ 163 (287)
||||||++.
T Consensus 59 --------------------------------miQGGDPTG--------------------------------------- 67 (164)
T KOG0881|consen 59 --------------------------------MIQGGDPTG--------------------------------------- 67 (164)
T ss_pred --------------------------------eeecCCCCC---------------------------------------
Confidence 777776543
Q ss_pred CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccc-ccccccCchhhhhhhhcCCCCCCc
Q psy13279 164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGS 242 (287)
Q Consensus 164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E-~~~~~h~~~G~lsMA~~~p~s~~S 242 (287)
+|.||.||||..|+|| ...++|...|+|||||++||+|+|
T Consensus 68 ---------------------------------------TGRGGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgS 108 (164)
T KOG0881|consen 68 ---------------------------------------TGRGGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGS 108 (164)
T ss_pred ---------------------------------------CCCCccccccchhhhhhhhhhcccchhhhhhhccCCCCCCc
Confidence 6667788888888888 458899999999999999999999
Q ss_pred eEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279 243 QFFLCTTKQEICVKLLDLLASLDAGWET 270 (287)
Q Consensus 243 QFFIt~g~~~~LD~~ytVfG~VieG~dv 270 (287)
|||||+.+++|||++||+||||..||+|
T Consensus 109 QFFiTLAPt~~LDGKHTIFGRV~~Gm~v 136 (164)
T KOG0881|consen 109 QFFITLAPTQWLDGKHTIFGRVCSGMEV 136 (164)
T ss_pred eEEEEecCccccCCcceeehhhhhhHHH
Confidence 9999999999999999999999999995
No 7
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=1.3e-36 Score=260.45 Aligned_cols=142 Identities=59% Similarity=0.954 Sum_probs=121.0
Q ss_pred CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCC------ceecCceeEEeccCcccccccccccccccccccccc
Q psy13279 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG------FGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDF 74 (287)
Q Consensus 1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g------~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~ 74 (287)
|||.|.+++.|+|+||||.+.||+||+||++||++.++ + |+++.||||+|+|
T Consensus 5 ~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~-Y~~~~f~Rv~~~~--------------------- 62 (164)
T cd01926 5 FDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFG-YKGSTFHRVIPDF--------------------- 62 (164)
T ss_pred EEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccc-cCCCEEEEEeCCc---------------------
Confidence 79999999999999999999999999999999976566 6 9999999999999
Q ss_pred ccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCcee
Q psy13279 75 AAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLS 154 (287)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ 154 (287)
++|+||+...++++
T Consensus 63 -----------------------------------------~iq~Gd~~~~~g~~------------------------- 76 (164)
T cd01926 63 -----------------------------------------MIQGGDFTRGNGTG------------------------- 76 (164)
T ss_pred -----------------------------------------EEEcCCccCCCCCC-------------------------
Confidence 89999865422222
Q ss_pred ccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhh
Q psy13279 155 MANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMAN 234 (287)
Q Consensus 155 ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~ 234 (287)
+.++|+..+++|...++|+++|+||||+
T Consensus 77 ----------------------------------------------------~~~~~g~~~~~e~~~~~h~~~G~lsma~ 104 (164)
T cd01926 77 ----------------------------------------------------GKSIYGEKFPDENFKLKHTGPGLLSMAN 104 (164)
T ss_pred ----------------------------------------------------CCcccCCccCCCCccccCCCccEEEeeE
Confidence 2344555566777778888999999999
Q ss_pred cCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCC
Q psy13279 235 SGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCG 283 (287)
Q Consensus 235 ~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~g 283 (287)
.+|++++||||||+++.|+||++|||||||++|||| +|+.+| .|..||
T Consensus 105 ~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i-~I~~cG 164 (164)
T cd01926 105 AGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKV-VIADCG 164 (164)
T ss_pred CCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCe-EEEECC
Confidence 999999999999999999999999999999999994 555666 566665
No 8
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=4.7e-36 Score=261.25 Aligned_cols=143 Identities=54% Similarity=0.862 Sum_probs=122.2
Q ss_pred CceEECceEeeEEEEEEeCCCChHHHHHHHHHHcc-------CCCceecCceeEEeccCccccccccccccccccccccc
Q psy13279 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTH-------EKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFD 73 (287)
Q Consensus 1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~-------~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~ 73 (287)
|||+|.+++.|+|+||||.+.||+||+||++||+| +.++ |+++.||||+|+|
T Consensus 20 ~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~-Y~~~~fhRvi~~~-------------------- 78 (183)
T PTZ00060 20 FDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLH-YKGSIFHRIIPQF-------------------- 78 (183)
T ss_pred EEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccc-cCCeEEEEEcCCC--------------------
Confidence 69999999999999999999999999999999974 3568 9999999999999
Q ss_pred cccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCce
Q psy13279 74 FAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVL 153 (287)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l 153 (287)
+||+||+...++++
T Consensus 79 ------------------------------------------~iqgGd~~~~~g~~------------------------ 92 (183)
T PTZ00060 79 ------------------------------------------MCQGGDITNHNGTG------------------------ 92 (183)
T ss_pred ------------------------------------------eEEeCCccCCCCCC------------------------
Confidence 89999875422222
Q ss_pred eccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhh
Q psy13279 154 SMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMA 233 (287)
Q Consensus 154 ~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA 233 (287)
+.++|+.++++|...++|+++|+||||
T Consensus 93 -----------------------------------------------------g~~~~g~~~~~e~~~~~h~~~G~lsma 119 (183)
T PTZ00060 93 -----------------------------------------------------GESIYGRKFTDENFKLKHDQPGLLSMA 119 (183)
T ss_pred -----------------------------------------------------CCcccccccCCccccccCCCCCEEEec
Confidence 233445556677677788889999999
Q ss_pred hcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCCC
Q psy13279 234 NSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCGE 284 (287)
Q Consensus 234 ~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~ge 284 (287)
+.++++++||||||+++.|+||++|||||||++|||| +|..+| .|..||+
T Consensus 120 ~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~v-~I~~cg~ 181 (183)
T PTZ00060 120 NAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPV-VVTDCGE 181 (183)
T ss_pred cCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCCe-EEEEeEE
Confidence 9999999999999999999999999999999999994 466677 7777775
No 9
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=7e-36 Score=260.77 Aligned_cols=144 Identities=53% Similarity=0.883 Sum_probs=122.4
Q ss_pred CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCC---C--ceecCceeEEeccCccccccccccccccccccccccc
Q psy13279 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK---G--FGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFA 75 (287)
Q Consensus 1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~---g--~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~ 75 (287)
|||.+.+++.|+|+||||.+.||+||+||++||+++. + .+|+++.||||+|+|
T Consensus 23 ~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f---------------------- 80 (186)
T PLN03149 23 FDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDF---------------------- 80 (186)
T ss_pred EEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCc----------------------
Confidence 6899999999999999999999999999999997643 2 249999999999999
Q ss_pred cCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceec
Q psy13279 76 AGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSM 155 (287)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~m 155 (287)
+||+||+...+++|
T Consensus 81 ----------------------------------------~iqgGd~~~~~g~g-------------------------- 94 (186)
T PLN03149 81 ----------------------------------------MIQGGDFLKGDGTG-------------------------- 94 (186)
T ss_pred ----------------------------------------EEEcCCcccCCCCC--------------------------
Confidence 89999875433333
Q ss_pred cccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhc
Q psy13279 156 ANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANS 235 (287)
Q Consensus 156 a~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~ 235 (287)
+.++|+..|++|+..++|+++|+||||+.
T Consensus 95 ---------------------------------------------------~~~~~g~~f~~e~~~~~h~~~G~lsma~~ 123 (186)
T PLN03149 95 ---------------------------------------------------CVSIYGSKFEDENFIAKHTGPGLLSMANS 123 (186)
T ss_pred ---------------------------------------------------cccccCCccCCcccccccCCCCEEEEeeC
Confidence 33344555666766778889999999999
Q ss_pred CCCCCCceEEEEcCCCCCCCCCccEEEEee-ecccc-------------ccceeeeeeecCCC
Q psy13279 236 GPNTNGSQFFLCTTKQEICVKLLDLLASLD-AGWET-------------RGVWKCHQWNGCGE 284 (287)
Q Consensus 236 ~p~s~~SQFFIt~g~~~~LD~~ytVfG~Vi-eG~dv-------------~~~~~~~~~~~~ge 284 (287)
++++++||||||+.+.|+||++|||||+|+ +|||| +|..+| +|..||+
T Consensus 124 g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i-~I~~cG~ 185 (186)
T PLN03149 124 GPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLAC-VISECGE 185 (186)
T ss_pred CCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCe-EEEeCEe
Confidence 999999999999999999999999999999 79994 677888 8888886
No 10
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=5e-36 Score=252.78 Aligned_cols=123 Identities=44% Similarity=0.676 Sum_probs=106.9
Q ss_pred ECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCC
Q psy13279 5 IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHS 84 (287)
Q Consensus 5 i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (287)
|..|++|+|+||||.+.||+||+||++|| +.+| |+++.||||+|+|
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f------------------------------- 46 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHA--RNGY-YNNTIFHRVIKGF------------------------------- 46 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHh--hcCC-cCCcEEEEEcCCc-------------------------------
Confidence 46799999999999999999999999999 8999 9999999999999
Q ss_pred CCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCC
Q psy13279 85 FPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNG 164 (287)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~ 164 (287)
++|+||+.. ++++
T Consensus 47 -------------------------------~iq~Gd~~~-~g~g----------------------------------- 59 (148)
T cd01927 47 -------------------------------MIQTGDPTG-DGTG----------------------------------- 59 (148)
T ss_pred -------------------------------EEEecccCC-CCCC-----------------------------------
Confidence 899998653 2222
Q ss_pred CceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccccc-ccccCchhhhhhhhcCCCCCCce
Q psy13279 165 SQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNGSQ 243 (287)
Q Consensus 165 SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~-~~~h~~~G~lsMA~~~p~s~~SQ 243 (287)
+.++|+.++++|.. .++|+++|+||||+.+|++++||
T Consensus 60 ------------------------------------------~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~Sq 97 (148)
T cd01927 60 ------------------------------------------GESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQ 97 (148)
T ss_pred ------------------------------------------CCcccCCccccccccccCcCCCeEEEEeeCCCCCCCce
Confidence 23344555666643 67788899999999999999999
Q ss_pred EEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279 244 FFLCTTKQEICVKLLDLLASLDAGWET 270 (287)
Q Consensus 244 FFIt~g~~~~LD~~ytVfG~VieG~dv 270 (287)
||||+++.|+||++|||||||++|||+
T Consensus 98 FfIt~~~~p~Ldg~~tvFG~V~~G~dv 124 (148)
T cd01927 98 FFITTVATPWLDNKHTVFGRVVKGMDV 124 (148)
T ss_pred EEEEcCCCcccCCCceEEEEEEcCHHH
Confidence 999999999999999999999999996
No 11
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2e-35 Score=267.00 Aligned_cols=141 Identities=28% Similarity=0.384 Sum_probs=121.7
Q ss_pred CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCc--------eecCceeEEeccC-ccccccccccccccccccc
Q psy13279 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF--------GYQGSSFHRIIPD-FVSFMTKRQSLKSRFSKFR 71 (287)
Q Consensus 1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~--------~Y~g~~f~rvi~~-~~~~~g~~~~~~~~~~~~~ 71 (287)
||++|++++.|+|+||||.|.||+||+||++||+|+.++ +|+++.||||+++ |
T Consensus 57 ldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f------------------ 118 (249)
T PTZ00221 57 LDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNN------------------ 118 (249)
T ss_pred EEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCC------------------
Confidence 799999999999999999999999999999999876542 2999999999986 6
Q ss_pred cccccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCC
Q psy13279 72 FDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPG 151 (287)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G 151 (287)
+||+||+...
T Consensus 119 --------------------------------------------~iqgGD~~~~-------------------------- 128 (249)
T PTZ00221 119 --------------------------------------------IIVLGELDSF-------------------------- 128 (249)
T ss_pred --------------------------------------------EEEeCCCCCC--------------------------
Confidence 8888875420
Q ss_pred ceeccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhh
Q psy13279 152 VLSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLS 231 (287)
Q Consensus 152 ~l~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~ls 231 (287)
+.++||.+|.+|++.++|+++|+||
T Consensus 129 -------------------------------------------------------g~s~~G~~f~dE~~~~~h~~~G~Ls 153 (249)
T PTZ00221 129 -------------------------------------------------------NVSSTGTPIADEGYRHRHTERGLLT 153 (249)
T ss_pred -------------------------------------------------------CccCCCCcccCccccccCCCCCEEE
Confidence 1123456688888888999999999
Q ss_pred hhhcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCCC
Q psy13279 232 MANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGEE 285 (287)
Q Consensus 232 MA~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge~ 285 (287)
|||.+|++++||||||++++||||++|+|||+|++|||| +|+.+| .|..||+-
T Consensus 154 Man~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V-~I~~Cgvl 219 (249)
T PTZ00221 154 MISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPV-TVSFCGAL 219 (249)
T ss_pred eCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCe-EEEECeEe
Confidence 999999999999999999999999999999999999993 677777 88888763
No 12
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=4.8e-35 Score=248.10 Aligned_cols=123 Identities=48% Similarity=0.757 Sum_probs=106.6
Q ss_pred ECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCC
Q psy13279 5 IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHS 84 (287)
Q Consensus 5 i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (287)
+.+|+.|+|+||||.+.||+||+||++|| +.+| |+++.||||+|+|
T Consensus 4 ~l~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~f------------------------------- 49 (153)
T cd01928 4 TLHTNLGDIKIELFCDDCPKACENFLALC--ASGY-YNGCIFHRNIKGF------------------------------- 49 (153)
T ss_pred EEEEccccEEEEEcCCCCcHHHHHHHHHH--hcCc-cCCcEEEEeCCCC-------------------------------
Confidence 45799999999999999999999999999 8899 9999999999999
Q ss_pred CCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCC
Q psy13279 85 FPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNG 164 (287)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~ 164 (287)
++|+||+.. ++++
T Consensus 50 -------------------------------~iq~Gd~~~-~g~g----------------------------------- 62 (153)
T cd01928 50 -------------------------------MVQTGDPTG-TGKG----------------------------------- 62 (153)
T ss_pred -------------------------------EEEccccCC-CCCC-----------------------------------
Confidence 899988653 2222
Q ss_pred CceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccccc-ccccCchhhhhhhhcCCCCCCce
Q psy13279 165 SQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNGSQ 243 (287)
Q Consensus 165 SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~-~~~h~~~G~lsMA~~~p~s~~SQ 243 (287)
+.++|+.++++|.. .++|+++|+||||+.++++++||
T Consensus 63 ------------------------------------------~~~~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~Sq 100 (153)
T cd01928 63 ------------------------------------------GESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQ 100 (153)
T ss_pred ------------------------------------------CCccCCCccccccccCCCcCCCcEEEEeeCCCCCcccE
Confidence 22334455666653 56788999999999999999999
Q ss_pred EEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279 244 FFLCTTKQEICVKLLDLLASLDAGWET 270 (287)
Q Consensus 244 FFIt~g~~~~LD~~ytVfG~VieG~dv 270 (287)
|||++++.|+||++|||||||++|||+
T Consensus 101 FfI~~~~~~~Ld~~~tvFG~V~~G~dv 127 (153)
T cd01928 101 FFITYAKQPHLDGKYTVFGKVIDGFET 127 (153)
T ss_pred EEEEeCCCcccCCCceEEEEEEeCHHH
Confidence 999999999999999999999999996
No 13
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=4e-35 Score=246.82 Aligned_cols=122 Identities=48% Similarity=0.802 Sum_probs=106.5
Q ss_pred CceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCCC
Q psy13279 6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSF 85 (287)
Q Consensus 6 ~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (287)
.+|+.|+|+||||.+.||+||+||++|| +++| |+++.||||+|+|
T Consensus 2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f-------------------------------- 46 (146)
T cd01922 2 LETTMGEITLELYWNHAPKTCKNFYELA--KRGY-YNGTIFHRLIKDF-------------------------------- 46 (146)
T ss_pred eEeccccEEEEEcCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEcCCc--------------------------------
Confidence 5799999999999999999999999999 8999 9999999999999
Q ss_pred CCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCCC
Q psy13279 86 PIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGS 165 (287)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~S 165 (287)
++|+||+.. ++.+
T Consensus 47 ------------------------------~iq~Gd~~~-~g~~------------------------------------ 59 (146)
T cd01922 47 ------------------------------MIQGGDPTG-TGRG------------------------------------ 59 (146)
T ss_pred ------------------------------EEEecccCC-CCCC------------------------------------
Confidence 899988643 2222
Q ss_pred ceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcCCCCCCceE
Q psy13279 166 QFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNGSQF 244 (287)
Q Consensus 166 qFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~p~s~~SQF 244 (287)
+.++|+.++++|. ..++|+++|+||||+.+|++++|||
T Consensus 60 -----------------------------------------~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqF 98 (146)
T cd01922 60 -----------------------------------------GASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQF 98 (146)
T ss_pred -----------------------------------------cccccCCCcccccccCcCCCCCeEEEEeeCCCCCCccEE
Confidence 2234455566663 4678889999999999999999999
Q ss_pred EEEcCCCCCCCCCccEEEEeeecccc
Q psy13279 245 FLCTTKQEICVKLLDLLASLDAGWET 270 (287)
Q Consensus 245 FIt~g~~~~LD~~ytVfG~VieG~dv 270 (287)
|||+++.|+||++|||||||++||||
T Consensus 99 fIt~~~~p~Ld~~~tvFG~V~~G~dv 124 (146)
T cd01922 99 FITLAPTPWLDGKHTIFGRVSKGMKV 124 (146)
T ss_pred EEEcCCCcccCCCCCEEEEEEcCHHH
Confidence 99999999999999999999999997
No 14
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=6.5e-35 Score=248.78 Aligned_cols=124 Identities=46% Similarity=0.734 Sum_probs=108.0
Q ss_pred EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279 4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH 83 (287)
Q Consensus 4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (287)
.+..|+.|+|+||||.+.||+||+||++|| +++| |+++.||||+|+|
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~~------------------------------ 48 (159)
T cd01923 2 VRLHTNKGDLNLELHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNF------------------------------ 48 (159)
T ss_pred EEEEEccccEEEEEeCCCChHHHHHHHHHH--hcCc-cCCcEEEEEeCCc------------------------------
Confidence 356799999999999999999999999999 8999 9999999999999
Q ss_pred CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279 84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN 163 (287)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~ 163 (287)
++|+||+.. ++
T Consensus 49 --------------------------------~iq~Gd~~~-~g------------------------------------ 59 (159)
T cd01923 49 --------------------------------MIQGGDPTG-TG------------------------------------ 59 (159)
T ss_pred --------------------------------EEEecccCC-CC------------------------------------
Confidence 889888643 22
Q ss_pred CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcCCCCCCc
Q psy13279 164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNGS 242 (287)
Q Consensus 164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~p~s~~S 242 (287)
.++.++|+.++++|. ..++|+++|+||||+.++++++|
T Consensus 60 -----------------------------------------~~~~~~~g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~s 98 (159)
T cd01923 60 -----------------------------------------RGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGS 98 (159)
T ss_pred -----------------------------------------CCCccccCCccCcccccCcCcCCCcEEEEeeCCCCCccc
Confidence 223345556666673 46678899999999999999999
Q ss_pred eEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279 243 QFFLCTTKQEICVKLLDLLASLDAGWET 270 (287)
Q Consensus 243 QFFIt~g~~~~LD~~ytVfG~VieG~dv 270 (287)
|||||+++.|+||++|||||||++|||+
T Consensus 99 qFfIt~~~~~~Ld~~~~vFG~V~~G~~v 126 (159)
T cd01923 99 QFFITYRSCKHLDGKHTVFGRVVGGLET 126 (159)
T ss_pred EEEEECCCCcccCCCccEEEEEEcCHHH
Confidence 9999999999999999999999999995
No 15
>KOG0882|consensus
Probab=100.00 E-value=6.6e-35 Score=275.96 Aligned_cols=125 Identities=42% Similarity=0.654 Sum_probs=116.3
Q ss_pred eEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCcc
Q psy13279 3 IKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTR 82 (287)
Q Consensus 3 ~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (287)
-+|+-|+.|+|.|.||++.+|+||+||-.-| ++|| |+|..|||||++|
T Consensus 406 ~aiihtt~gdi~~kl~p~ecpktvenf~th~--rngy-y~~~~fhriik~f----------------------------- 453 (558)
T KOG0882|consen 406 AAIIHTTQGDIHIKLYPEECPKTVENFTTHS--RNGY-YDNHTFHRIIKGF----------------------------- 453 (558)
T ss_pred ceEEEecccceEEEecccccchhhhhhhccc--cCcc-ccCcchHHhhhhh-----------------------------
Confidence 4788999999999999999999999999999 9999 9999999999999
Q ss_pred CCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCC
Q psy13279 83 HSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNT 162 (287)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s 162 (287)
|||+|||+
T Consensus 454 ---------------------------------miqtgdp~--------------------------------------- 461 (558)
T KOG0882|consen 454 ---------------------------------MIQTGDPL--------------------------------------- 461 (558)
T ss_pred ---------------------------------eeecCCCC---------------------------------------
Confidence 77766654
Q ss_pred CCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcCCCCCC
Q psy13279 163 NGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNG 241 (287)
Q Consensus 163 ~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~p~s~~ 241 (287)
+ +|+||+||||..|+||. +.|+|+++-+|||||+|||+||
T Consensus 462 --------------------------------------g-~gtggesiwg~dfedefh~~lrhdrpft~smanag~ntng 502 (558)
T KOG0882|consen 462 --------------------------------------G-DGTGGESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNG 502 (558)
T ss_pred --------------------------------------C-CCCCCcccccccchhhcCcccccCCCceEEecccCCCCCC
Confidence 3 77888899999999994 6899999999999999999999
Q ss_pred ceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279 242 SQFFLCTTKQEICVKLLDLLASLDAGWET 270 (287)
Q Consensus 242 SQFFIt~g~~~~LD~~ytVfG~VieG~dv 270 (287)
||||||+.++||||+++||||||+.||||
T Consensus 503 sqffit~~~tpwld~khtvfgrv~~gm~v 531 (558)
T KOG0882|consen 503 SQFFITTVPTPWLDGKHTVFGRVTAGMDV 531 (558)
T ss_pred ceEEEEecCccccCCcceeEEEEecchhH
Confidence 99999999999999999999999999996
No 16
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=3.8e-34 Score=245.62 Aligned_cols=130 Identities=32% Similarity=0.531 Sum_probs=106.7
Q ss_pred ECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCC
Q psy13279 5 IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHS 84 (287)
Q Consensus 5 i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (287)
+.+|+.|+|+||||.+.||+||+||++|| +.+| |+++.||||+++|
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~--~~~~-Y~g~~fhrvi~~f------------------------------- 46 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLC--KLKY-YNFCLFYNVQKDF------------------------------- 46 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHH--hcCC-cCCCEEEEEeCCc-------------------------------
Confidence 35799999999999999999999999999 8999 9999999999999
Q ss_pred CCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCC
Q psy13279 85 FPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNG 164 (287)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~ 164 (287)
+||+||+.. +++++.++|+...
T Consensus 47 -------------------------------~iQgGd~~~-~g~~~~~~~~~~~-------------------------- 68 (166)
T cd01921 47 -------------------------------IAQTGDPTG-TGAGGESIYSQLY-------------------------- 68 (166)
T ss_pred -------------------------------eEEECCcCC-CCCCCcccccccc--------------------------
Confidence 999999864 4444332221000
Q ss_pred CceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcCCCCCCce
Q psy13279 165 SQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNGSQ 243 (287)
Q Consensus 165 SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~p~s~~SQ 243 (287)
++ .+..+.+|. ..++|+++|+|||||.++++++||
T Consensus 69 --------------------------------~~------------~~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQ 104 (166)
T cd01921 69 --------------------------------GR------------QARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQ 104 (166)
T ss_pred --------------------------------cc------------cCcccCcccCCccccCCceEEEEeECCCCCccce
Confidence 00 022355554 467899999999999999999999
Q ss_pred EEEEcCC-CCCCCCCccEEEEeeecccc
Q psy13279 244 FFLCTTK-QEICVKLLDLLASLDAGWET 270 (287)
Q Consensus 244 FFIt~g~-~~~LD~~ytVfG~VieG~dv 270 (287)
||||+++ .|+||++|||||||++||||
T Consensus 105 FfIt~~~~~~~Ldg~~tvFG~Vi~G~dv 132 (166)
T cd01921 105 FYITLGENLDYLDGKHTVFGQVVEGFDV 132 (166)
T ss_pred EEEEcCCCCcccCCCccEEEEEEcCHHH
Confidence 9999975 79999999999999999995
No 17
>KOG0883|consensus
Probab=100.00 E-value=2.6e-34 Score=267.47 Aligned_cols=122 Identities=45% Similarity=0.750 Sum_probs=113.7
Q ss_pred CceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCCC
Q psy13279 6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSF 85 (287)
Q Consensus 6 ~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (287)
..|+.|.|-|||+.|.||++|+||+.|| ++|| |+++.|||.|++|
T Consensus 282 l~Tn~G~lNlELhcd~~P~aceNFI~lc--~~gY-Ynnt~FHRsIrnF-------------------------------- 326 (518)
T KOG0883|consen 282 LVTNHGPLNLELHCDYAPRACENFITLC--KNGY-YNNTIFHRSIRNF-------------------------------- 326 (518)
T ss_pred EeccCCceeeEeecCcchHHHHHHHHHH--hccc-ccchHHHHHHHHH--------------------------------
Confidence 3689999999999999999999999999 9999 9999999999998
Q ss_pred CCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCCC
Q psy13279 86 PIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGS 165 (287)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~S 165 (287)
|||||||+
T Consensus 327 ------------------------------miQGGDPT------------------------------------------ 334 (518)
T KOG0883|consen 327 ------------------------------MIQGGDPT------------------------------------------ 334 (518)
T ss_pred ------------------------------eeeCCCCC------------------------------------------
Confidence 67666654
Q ss_pred ceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcCCCCCCceE
Q psy13279 166 QFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNGSQF 244 (287)
Q Consensus 166 qFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~p~s~~SQF 244 (287)
+ +|.||+||||.+|.||. ..+.|+.+|+|||||+|||+|+|||
T Consensus 335 -----------------------------------G-TG~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQF 378 (518)
T KOG0883|consen 335 -----------------------------------G-TGRGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQF 378 (518)
T ss_pred -----------------------------------C-CCCCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceE
Confidence 3 77889999999999995 6899999999999999999999999
Q ss_pred EEEcCCCCCCCCCccEEEEeeecccc
Q psy13279 245 FLCTTKQEICVKLLDLLASLDAGWET 270 (287)
Q Consensus 245 FIt~g~~~~LD~~ytVfG~VieG~dv 270 (287)
||+++.+-|||++|||||+|+-|+|+
T Consensus 379 FItyrsckhLd~KHTIFGrvVGGldt 404 (518)
T KOG0883|consen 379 FITYRSCKHLDNKHTIFGRVVGGLDT 404 (518)
T ss_pred EEEecchhhccccceeeeeeeccHHH
Confidence 99999999999999999999999995
No 18
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=5.4e-33 Score=239.62 Aligned_cols=123 Identities=40% Similarity=0.691 Sum_probs=105.5
Q ss_pred EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279 4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH 83 (287)
Q Consensus 4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (287)
.+..|++|+|+||||.+.||+||+||++|| +++| |+++.||||+++|
T Consensus 8 v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~--~~~~-Y~~~~f~Rvi~~f------------------------------ 54 (171)
T cd01925 8 VILKTTAGDIDIELWSKEAPKACRNFIQLC--LEGY-YDNTIFHRVVPGF------------------------------ 54 (171)
T ss_pred EEEEEccccEEEEEeCCCChHHHHHHHHHH--hcCC-CCCCEEEEEcCCc------------------------------
Confidence 456899999999999999999999999999 8999 9999999999999
Q ss_pred CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279 84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN 163 (287)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~ 163 (287)
++|+||+.. +++
T Consensus 55 --------------------------------~iQgGd~~~-~g~----------------------------------- 66 (171)
T cd01925 55 --------------------------------IIQGGDPTG-TGT----------------------------------- 66 (171)
T ss_pred --------------------------------EEEccccCC-CCc-----------------------------------
Confidence 899888653 222
Q ss_pred CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccccc-ccccCchhhhhhhhcCCCCCCc
Q psy13279 164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNGS 242 (287)
Q Consensus 164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~-~~~h~~~G~lsMA~~~p~s~~S 242 (287)
++.++|+.++.+|.. .++|+++|+||||+.++++++|
T Consensus 67 ------------------------------------------g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~s 104 (171)
T cd01925 67 ------------------------------------------GGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGS 104 (171)
T ss_pred ------------------------------------------cCcccCCCccCcccccCcCCCCCcEEEECcCCCCCccc
Confidence 233455566766743 5678899999999999999999
Q ss_pred eEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279 243 QFFLCTTKQEICVKLLDLLASLDAGWET 270 (287)
Q Consensus 243 QFFIt~g~~~~LD~~ytVfG~VieG~dv 270 (287)
|||||+++.|+||++|||||+|+ |+++
T Consensus 105 qFfIt~~~~~~ldg~~tvFG~V~-g~~~ 131 (171)
T cd01925 105 QFFFTLDKADELNNKHTLFGKVT-GDTI 131 (171)
T ss_pred EEEEEcCCCcccCCCceEEEEEE-ECcH
Confidence 99999999999999999999998 5443
No 19
>KOG0884|consensus
Probab=100.00 E-value=1.9e-33 Score=225.18 Aligned_cols=121 Identities=48% Similarity=0.750 Sum_probs=111.0
Q ss_pred ceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCCCC
Q psy13279 7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFP 86 (287)
Q Consensus 7 ~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (287)
.|..|+|.||||.+.+|++|+||+.|| ...| |+++.|||-+|+|
T Consensus 6 ht~~gdikiev~~e~tpktce~~l~~~--~~~~-~n~~~~~~~~~~f--------------------------------- 49 (161)
T KOG0884|consen 6 HTDVGDIKIEVFCERTPKTCENFLALC--ASDY-YNGCIFHRNIKGF--------------------------------- 49 (161)
T ss_pred eeccCcEEEEEEecCChhHHHHHHHHh--hhhh-ccceeecCCCCCc---------------------------------
Confidence 578899999999999999999999999 8889 9999999999998
Q ss_pred CCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCCCc
Q psy13279 87 IPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQ 166 (287)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~Sq 166 (287)
|+|.||++-
T Consensus 50 -----------------------------~v~~~~~~~------------------------------------------ 58 (161)
T KOG0884|consen 50 -----------------------------MVQTGDPTH------------------------------------------ 58 (161)
T ss_pred -----------------------------EEEeCCCCC------------------------------------------
Confidence 777666432
Q ss_pred eeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcCCCCCCceEE
Q psy13279 167 FFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNGSQFF 245 (287)
Q Consensus 167 FfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~p~s~~SQFF 245 (287)
+|.||.||||.+|+||. .-++|+.+|++||||++||+|+||||
T Consensus 59 ------------------------------------tgrgg~siwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqff 102 (161)
T KOG0884|consen 59 ------------------------------------TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFF 102 (161)
T ss_pred ------------------------------------CCCCCccccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEE
Confidence 66788899999999994 57899999999999999999999999
Q ss_pred EEcCCCCCCCCCccEEEEeeecccc
Q psy13279 246 LCTTKQEICVKLLDLLASLDAGWET 270 (287)
Q Consensus 246 It~g~~~~LD~~ytVfG~VieG~dv 270 (287)
||.++.||||=+|||||+|++|+|+
T Consensus 103 ity~kq~hldmkytvfgkvidg~et 127 (161)
T KOG0884|consen 103 ITYGKQPHLDMKYTVFGKVIDGLET 127 (161)
T ss_pred EEecCCCccceeEeeeeeeccchhh
Confidence 9999999999999999999999995
No 20
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.98 E-value=2.4e-32 Score=236.57 Aligned_cols=142 Identities=30% Similarity=0.432 Sum_probs=104.8
Q ss_pred ceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCCCC
Q psy13279 7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFP 86 (287)
Q Consensus 7 ~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (287)
.|+.|+|+||||.+.||+||+||++|| +++| |+++.||||+|+|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRVi~~f--------------------------------- 46 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLV--ERGF-YDGMEFHRVEGGF--------------------------------- 46 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHH--HhCC-cCCCEEEEecCCc---------------------------------
Confidence 689999999999999999999999999 8999 9999999999999
Q ss_pred CCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCCCc
Q psy13279 87 IPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQ 166 (287)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~Sq 166 (287)
|+|+||+.. .+++.. .. +. ..+ +..|.
T Consensus 47 -----------------------------viQgGdp~~-~~~~~~-----~~--~~--~~~---------~~~p~----- 73 (176)
T cd01924 47 -----------------------------VVQTGDPQG-KNPGFP-----DP--ET--GKS---------RTIPL----- 73 (176)
T ss_pred -----------------------------EEEecCCCC-CCCCcc-----cc--cc--ccc---------ccccc-----
Confidence 888888764 222211 00 00 000 00000
Q ss_pred eeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcc-----cccccccccCchhhhhhhhcC--CCC
Q psy13279 167 FFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKF-----EDENFILKHTGPGVLSMANSG--PNT 239 (287)
Q Consensus 167 FfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~-----~~E~~~~~h~~~G~lsMA~~~--p~s 239 (287)
-++ .+..+.++|+.++ .+++..++|+++|+|||||.+ |++
T Consensus 74 --------------------------e~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns 120 (176)
T cd01924 74 --------------------------EIK-------PEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNS 120 (176)
T ss_pred --------------------------eec-------ccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCC
Confidence 000 0001122333322 245667789999999999988 699
Q ss_pred CCceEEEEcC-------CCCCCCCCccEEEEeeecccc
Q psy13279 240 NGSQFFLCTT-------KQEICVKLLDLLASLDAGWET 270 (287)
Q Consensus 240 ~~SQFFIt~g-------~~~~LD~~ytVfG~VieG~dv 270 (287)
++|||||+++ +.||||++|||||+|++||||
T Consensus 121 ~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dv 158 (176)
T cd01924 121 ASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDI 158 (176)
T ss_pred ccceEEEEeccccccCCCCCccCCCceEEEEEecCHHH
Confidence 9999999998 789999999999999999997
No 21
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.97 E-value=8.1e-32 Score=230.84 Aligned_cols=122 Identities=28% Similarity=0.418 Sum_probs=98.5
Q ss_pred EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279 4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH 83 (287)
Q Consensus 4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (287)
.+..|+.|+|+|+||.+.||+||+||++|| +.+| |+++.||||+|+|
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f------------------------------ 48 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGF------------------------------ 48 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEecCc------------------------------
Confidence 356899999999999999999999999999 8999 9999999999999
Q ss_pred CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279 84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN 163 (287)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~ 163 (287)
++|+||+... .+..
T Consensus 49 --------------------------------~iQgGd~~~~--~~~~-------------------------------- 62 (164)
T PRK10791 49 --------------------------------MIQGGGFEPG--MKQK-------------------------------- 62 (164)
T ss_pred --------------------------------EEEeCCcCCC--CCcC--------------------------------
Confidence 9999975320 0000
Q ss_pred CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcC-CCCCCc
Q psy13279 164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSG-PNTNGS 242 (287)
Q Consensus 164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~-p~s~~S 242 (287)
.++.++.+|.....++.+|+|||||.+ |++++|
T Consensus 63 ----------------------------------------------~~~~~~~~e~~~~~~~~~G~lsma~~~~p~s~~S 96 (164)
T PRK10791 63 ----------------------------------------------ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATA 96 (164)
T ss_pred ----------------------------------------------CCCCCcCCcccccccCCCcEEEECCCCCcCCccc
Confidence 001224444322234579999999986 999999
Q ss_pred eEEEEcCCCCCCC--------CCccEEEEeeecccc
Q psy13279 243 QFFLCTTKQEICV--------KLLDLLASLDAGWET 270 (287)
Q Consensus 243 QFFIt~g~~~~LD--------~~ytVfG~VieG~dv 270 (287)
||||++++.++|| ++|||||||++||||
T Consensus 97 QFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dv 132 (164)
T PRK10791 97 QFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDV 132 (164)
T ss_pred eEEEEecCchhhcccccccCCCCccEEEEEecCHHH
Confidence 9999999988886 379999999999996
No 22
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.97 E-value=1.2e-31 Score=227.68 Aligned_cols=120 Identities=28% Similarity=0.415 Sum_probs=99.4
Q ss_pred CceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCCC
Q psy13279 6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSF 85 (287)
Q Consensus 6 ~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (287)
.+|+.|+|+||||.+.||+||+||++|| +++| |+++.||||+|+|
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f-------------------------------- 46 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGF-------------------------------- 46 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCc--------------------------------
Confidence 3689999999999999999999999999 8999 9999999999999
Q ss_pred CCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCCC
Q psy13279 86 PIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGS 165 (287)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~S 165 (287)
|+|+||+.... .+.
T Consensus 47 ------------------------------~iQ~Gd~~~~~-~~~----------------------------------- 60 (155)
T cd01920 47 ------------------------------VIQGGGFTPDL-AQK----------------------------------- 60 (155)
T ss_pred ------------------------------EEEeCCCCCCC-Ccc-----------------------------------
Confidence 99999875410 000
Q ss_pred ceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcC-CCCCCceE
Q psy13279 166 QFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSG-PNTNGSQF 244 (287)
Q Consensus 166 qFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~-p~s~~SQF 244 (287)
.++.++.+|.....|+++|+||||+.+ |++++|||
T Consensus 61 --------------------------------------------~~~~~~~~e~~~~~~~~~G~v~ma~~~~~~s~~SqF 96 (155)
T cd01920 61 --------------------------------------------ETLKPIKNEAGNGLSNTRGTIAMARTNAPDSATSQF 96 (155)
T ss_pred --------------------------------------------ccCCcccCcccccccCCceEEEECCCCCCCCccceE
Confidence 001224444333345789999999976 89999999
Q ss_pred EEEcCCCCCCCC-----CccEEEEeeecccc
Q psy13279 245 FLCTTKQEICVK-----LLDLLASLDAGWET 270 (287)
Q Consensus 245 FIt~g~~~~LD~-----~ytVfG~VieG~dv 270 (287)
||++++.|+||. +|||||+|++||||
T Consensus 97 fI~~~~~~~ld~~~~~~~ytvFG~V~eG~dv 127 (155)
T cd01920 97 FINLKDNASLDYQNEQWGYTVFGEVTEGMDV 127 (155)
T ss_pred EEECCCchhcCCcccCCCccEEEEEecCHHH
Confidence 999999999995 89999999999996
No 23
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=99.97 E-value=1.9e-31 Score=233.54 Aligned_cols=122 Identities=25% Similarity=0.421 Sum_probs=101.1
Q ss_pred EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279 4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH 83 (287)
Q Consensus 4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (287)
.+.+|+.|+|+||||.+.||+||+||++|| +++| |+++.||||+|+|
T Consensus 31 v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f------------------------------ 77 (190)
T PRK10903 31 VLLTTSAGNIELELNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGF------------------------------ 77 (190)
T ss_pred EEEEeccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEeCCc------------------------------
Confidence 356899999999999999999999999999 8999 9999999999999
Q ss_pred CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279 84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN 163 (287)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~ 163 (287)
|+|+||+....+ +
T Consensus 78 --------------------------------~iQgG~~~~~~~-~---------------------------------- 90 (190)
T PRK10903 78 --------------------------------MIQGGGFTEQMQ-Q---------------------------------- 90 (190)
T ss_pred --------------------------------eEEeCCcCCCCC-C----------------------------------
Confidence 999998653100 0
Q ss_pred CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcC-CCCCCc
Q psy13279 164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSG-PNTNGS 242 (287)
Q Consensus 164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~-p~s~~S 242 (287)
..++.++.+|.....|+++|+|||||.+ |++++|
T Consensus 91 ---------------------------------------------~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~S 125 (190)
T PRK10903 91 ---------------------------------------------KKPNPPIKNEADNGLRNTRGTIAMARTADKDSATS 125 (190)
T ss_pred ---------------------------------------------CCCCCcccCcccccCcCCCcEEEeCCCCCCCCccc
Confidence 0001224445433456789999999976 999999
Q ss_pred eEEEEcCCCCCCCC-----CccEEEEeeecccc
Q psy13279 243 QFFLCTTKQEICVK-----LLDLLASLDAGWET 270 (287)
Q Consensus 243 QFFIt~g~~~~LD~-----~ytVfG~VieG~dv 270 (287)
|||||+++.++||+ +|||||+|++||||
T Consensus 126 QFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dv 158 (190)
T PRK10903 126 QFFINVADNAFLDHGQRDFGYAVFGKVVKGMDV 158 (190)
T ss_pred EEEEECcCcccccCCccCCCccEEEEEecCHHH
Confidence 99999999999984 99999999999996
No 24
>KOG0865|consensus
Probab=99.97 E-value=9.9e-32 Score=229.45 Aligned_cols=134 Identities=63% Similarity=1.061 Sum_probs=114.9
Q ss_pred CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR 80 (287)
Q Consensus 1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
+|+++.++++|+++++|+.|..|+|++||..||+|+++++|+++.|||+++.+
T Consensus 8 ~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~--------------------------- 60 (167)
T KOG0865|consen 8 FDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPII--------------------------- 60 (167)
T ss_pred eeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccc---------------------------
Confidence 69999999999999999999999999999999999999999999999964442
Q ss_pred ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279 81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP 160 (287)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~ 160 (287)
..+|+||||++.+
T Consensus 61 --------------------------------~~fm~qggDft~h----------------------------------- 73 (167)
T KOG0865|consen 61 --------------------------------PGFMCQGGDFTCH----------------------------------- 73 (167)
T ss_pred --------------------------------cceeeccCccccc-----------------------------------
Confidence 0016666665554
Q ss_pred CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCCC
Q psy13279 161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN 240 (287)
Q Consensus 161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s~ 240 (287)
+|+++.|||++.|+||++.++|..+|+|||||++||+|
T Consensus 74 ------------------------------------------ngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntn 111 (167)
T KOG0865|consen 74 ------------------------------------------NGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTN 111 (167)
T ss_pred ------------------------------------------CCccceEecccccCCcCcEEecCCCCeeehhhcCCCcc
Confidence 44555556666677777778888889999999999999
Q ss_pred CceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279 241 GSQFFLCTTKQEICVKLLDLLASLDAGWET 270 (287)
Q Consensus 241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv 270 (287)
+||||||+.+++|||+++.|||+|.+||++
T Consensus 112 gsqffictaktewLdgkhVVfGkv~eGm~i 141 (167)
T KOG0865|consen 112 GSQFFICTAKTEWLDGKHVVFGKVKEGMDI 141 (167)
T ss_pred ccEEEEEccccccccCceeEcCceEcccch
Confidence 999999999999999999999999999995
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.96 E-value=4.7e-29 Score=208.72 Aligned_cols=121 Identities=48% Similarity=0.719 Sum_probs=102.8
Q ss_pred CceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCCC
Q psy13279 6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSF 85 (287)
Q Consensus 6 ~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (287)
..|+.|+|+||||.+.||++|+||++|| +.++ |+++.||||+|++
T Consensus 2 ~~T~~G~i~IeL~~~~~P~~~~nF~~l~--~~~~-Y~~~~f~rv~~~~-------------------------------- 46 (146)
T cd00317 2 LDTTKGRIVIELYGDEAPKTVENFLSLA--RGGF-YDGTTFHRVIPGF-------------------------------- 46 (146)
T ss_pred eEeccCcEEEEEcCCCChHHHHHHHHHH--hcCC-cCCCEEEEEeCCC--------------------------------
Confidence 5789999999999999999999999999 8888 9999999999999
Q ss_pred CCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCCC
Q psy13279 86 PIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGS 165 (287)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~S 165 (287)
++|+||+......+
T Consensus 47 ------------------------------~iq~Gd~~~~~~~~------------------------------------ 60 (146)
T cd00317 47 ------------------------------MIQGGDPTGTGGGG------------------------------------ 60 (146)
T ss_pred ------------------------------eEEECCCCCCCCCC------------------------------------
Confidence 89999876521100
Q ss_pred ceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccccccc-ccCchhhhhhhhcCCCCCCceE
Q psy13279 166 QFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFIL-KHTGPGVLSMANSGPNTNGSQF 244 (287)
Q Consensus 166 qFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~-~h~~~G~lsMA~~~p~s~~SQF 244 (287)
+.++..+++|.... +|+++|+|+|++.++++++|||
T Consensus 61 -------------------------------------------~~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF 97 (146)
T cd00317 61 -------------------------------------------SGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQF 97 (146)
T ss_pred -------------------------------------------CcCCCccCCccccCcCcCCCcEEEEeeCCCCCcccEE
Confidence 11133456665433 3889999999999999999999
Q ss_pred EEEcCCCCCCCCCccEEEEeeecccc
Q psy13279 245 FLCTTKQEICVKLLDLLASLDAGWET 270 (287)
Q Consensus 245 FIt~g~~~~LD~~ytVfG~VieG~dv 270 (287)
||++.+.++||++|+|||+|++|||+
T Consensus 98 ~Itl~~~~~ld~~~~vfG~V~~G~~v 123 (146)
T cd00317 98 FITTAPTPHLDGKHTVFGKVVEGMDV 123 (146)
T ss_pred EEECCCCcccCCCceEEEEEeCCHHH
Confidence 99999999999999999999999996
No 26
>KOG0885|consensus
Probab=99.96 E-value=2.7e-29 Score=233.09 Aligned_cols=119 Identities=39% Similarity=0.684 Sum_probs=108.5
Q ss_pred EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279 4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH 83 (287)
Q Consensus 4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (287)
.|..|+.|+|-|||++..+|++|.||+.|| -.|| |+|+.|||++|+|
T Consensus 15 vil~TT~G~I~iELW~kE~P~acrnFiqKO--Gegy-y~nt~fhrlvp~f------------------------------ 61 (439)
T KOG0885|consen 15 VILKTTKGDIDIELWAKECPKACRNFIQLC--LEGY-YDNTEFHRLVPGF------------------------------ 61 (439)
T ss_pred EEEEeccCceeeeehhhhhhHHHHHHHHHH--Hhcc-ccCceeeeeccch------------------------------
Confidence 366899999999999999999999999999 9999 9999999999999
Q ss_pred CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279 84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN 163 (287)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~ 163 (287)
.+|||||++
T Consensus 62 --------------------------------~~Qggdp~~--------------------------------------- 70 (439)
T KOG0885|consen 62 --------------------------------LVQGGDPTG--------------------------------------- 70 (439)
T ss_pred --------------------------------hcccCCCCC---------------------------------------
Confidence 566665543
Q ss_pred CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccc-ccccccCchhhhhhhhcCCCCCCc
Q psy13279 164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGS 242 (287)
Q Consensus 164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E-~~~~~h~~~G~lsMA~~~p~s~~S 242 (287)
+|+||.||||.+|.+| +..+++.++|+|+|||++.+.|||
T Consensus 71 ---------------------------------------~gtGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngs 111 (439)
T KOG0885|consen 71 ---------------------------------------TGTGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGS 111 (439)
T ss_pred ---------------------------------------CCCCccccccccchhhcCcceeeeccceeeecccCCCCCCc
Confidence 6777888888888888 468899999999999999999999
Q ss_pred eEEEEcCCCCCCCCCccEEEEee
Q psy13279 243 QFFLCTTKQEICVKLLDLLASLD 265 (287)
Q Consensus 243 QFFIt~g~~~~LD~~ytVfG~Vi 265 (287)
|||+|++++||||+++||||+|+
T Consensus 112 qFfftl~~~~el~nk~tiFGKVt 134 (439)
T KOG0885|consen 112 QFFFTLGDTPELNNKHTIFGKVT 134 (439)
T ss_pred eEEEEecCChHhcccCceeeeec
Confidence 99999999999999999999998
No 27
>KOG0415|consensus
Probab=99.95 E-value=1.1e-28 Score=227.81 Aligned_cols=130 Identities=35% Similarity=0.527 Sum_probs=110.4
Q ss_pred ECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCC
Q psy13279 5 IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHS 84 (287)
Q Consensus 5 i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (287)
+++|++|+|+|+||.+..|++|.||++|| +..| |+.+.||.|.++|
T Consensus 4 lieTtlGDlvIDLf~~erP~~clNFLKLC--k~KY-YN~clfh~vq~~f------------------------------- 49 (479)
T KOG0415|consen 4 LIETTLGDLVIDLFVKERPRTCLNFLKLC--KIKY-YNFCLFHTVQRDF------------------------------- 49 (479)
T ss_pred EEEeecccEEeeeecccCcHHHHHHHHHH--hHhh-cccceeeeccccc-------------------------------
Confidence 45899999999999999999999999999 9999 9999999999999
Q ss_pred CCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCC
Q psy13279 85 FPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNG 164 (287)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~ 164 (287)
.+|.|||+. .|.|+.|+|+.-.
T Consensus 50 -------------------------------~aQTGDPtG-tG~GG~si~~~ly-------------------------- 71 (479)
T KOG0415|consen 50 -------------------------------TAQTGDPTG-TGDGGESIYGVLY-------------------------- 71 (479)
T ss_pred -------------------------------eeecCCCCC-CCCCcceeeeecc--------------------------
Confidence 788888776 6666655443221
Q ss_pred CceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccc-ccccccCchhhhhhhhcCCCCCCce
Q psy13279 165 SQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQ 243 (287)
Q Consensus 165 SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E-~~~~~h~~~G~lsMA~~~p~s~~SQ 243 (287)
| .+ +..|.+| .++++|.+.|+|||++++.|.+|||
T Consensus 72 ----------------G-----------------------~q-----~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQ 107 (479)
T KOG0415|consen 72 ----------------G-----------------------EQ-----ARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQ 107 (479)
T ss_pred ----------------c-----------------------cc-----chhhhhhhcccccccccceEEeecCCcccccce
Confidence 0 00 2236777 4689999999999999999999999
Q ss_pred EEEEcCC-CCCCCCCccEEEEeeecccc
Q psy13279 244 FFLCTTK-QEICVKLLDLLASLDAGWET 270 (287)
Q Consensus 244 FFIt~g~-~~~LD~~ytVfG~VieG~dv 270 (287)
||||+++ ..+||++|||||+|+||||+
T Consensus 108 F~iTlgenLdyLDg~htvfGqV~EG~dt 135 (479)
T KOG0415|consen 108 FFITLGENLDYLDGKHTVFGQVAEGFDT 135 (479)
T ss_pred EEEEccccccccccccceeeehhhhHHH
Confidence 9999976 57999999999999999995
No 28
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.95 E-value=1.6e-27 Score=201.17 Aligned_cols=124 Identities=41% Similarity=0.651 Sum_probs=99.8
Q ss_pred CceE-eeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCC
Q psy13279 6 GKQE-VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHS 84 (287)
Q Consensus 6 ~~t~-~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (287)
+.|+ +|+|+||||.+.||++|+||++|| +.++ |+++.||||+|++
T Consensus 4 i~t~~~G~i~ieL~~~~aP~~~~nF~~l~--~~~~-y~g~~f~ri~~~~------------------------------- 49 (155)
T PF00160_consen 4 IETSGLGRIVIELFGDEAPKTVENFLRLC--TSGF-YDGTKFHRIIPNF------------------------------- 49 (155)
T ss_dssp EEETTEEEEEEEEETTTSHHHHHHHHHHH--HTTS-STTEBEEEEETTT-------------------------------
T ss_pred EEeCCccCEEEEEeCCCCcHHHHhhehhh--cccc-cCCceeecccccc-------------------------------
Confidence 3453 999999999999999999999999 7888 9999999999998
Q ss_pred CCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCC
Q psy13279 85 FPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNG 164 (287)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~ 164 (287)
++|+|++......+..
T Consensus 50 -------------------------------~i~~G~~~~~~~~~~~--------------------------------- 65 (155)
T PF00160_consen 50 -------------------------------VIQGGDPTGNGGYGRE--------------------------------- 65 (155)
T ss_dssp -------------------------------EEEESSTTTSSSSTSE---------------------------------
T ss_pred -------------------------------eeeeeeccCCCCcccc---------------------------------
Confidence 9999997652110000
Q ss_pred CceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccccc-ccccCchhhhhhhhcC--CCCCC
Q psy13279 165 SQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANSG--PNTNG 241 (287)
Q Consensus 165 SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~-~~~h~~~G~lsMA~~~--p~s~~ 241 (287)
. ...+.++++|.. ...++++|+|+|++.+ +++++
T Consensus 66 ------------------------------------------~-~~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~ 102 (155)
T PF00160_consen 66 ------------------------------------------D-STGGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNG 102 (155)
T ss_dssp ------------------------------------------E-BTTBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBS
T ss_pred ------------------------------------------c-ccCccccccccccccccccceeeeecccccCCCCCC
Confidence 0 000223666652 3445589999999986 89999
Q ss_pred ceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279 242 SQFFLCTTKQEICVKLLDLLASLDAGWET 270 (287)
Q Consensus 242 SQFFIt~g~~~~LD~~ytVfG~VieG~dv 270 (287)
|||||++++.++||++|+|||+|++||++
T Consensus 103 sqF~I~l~~~~~ld~~~~vfG~V~~G~~v 131 (155)
T PF00160_consen 103 SQFFITLSDAPHLDGKYTVFGRVIEGMDV 131 (155)
T ss_dssp SEEEEESSCGGGGTTTSEEEEEEEEHHHH
T ss_pred ceEEeeccCCCccccceeeeeEEehhHHH
Confidence 99999999999999999999999999995
No 29
>KOG0546|consensus
Probab=99.69 E-value=7.3e-18 Score=157.36 Aligned_cols=66 Identities=56% Similarity=0.806 Sum_probs=61.3
Q ss_pred CCCCCccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeee
Q psy13279 126 NGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFT 191 (287)
Q Consensus 126 ~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~ 191 (287)
+|+|+.||||..++||++.++|+++++||||+.+||++|||||||+.+. |+|+|||+|+.+..++.
T Consensus 84 nGtGGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr 153 (372)
T KOG0546|consen 84 NGTGGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVR 153 (372)
T ss_pred CCCCcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHH
Confidence 0368999999999999999999999999999999999999999999997 99999999999987763
No 30
>KOG0111|consensus
Probab=99.68 E-value=1.5e-17 Score=146.06 Aligned_cols=70 Identities=54% Similarity=0.778 Sum_probs=66.5
Q ss_pred cccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecccccc
Q psy13279 132 SIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGDFTN 201 (287)
Q Consensus 132 ~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd~~~ 201 (287)
||||.++++||+.|+|+.+|+|+||++++|+++||||||+.+. +++++||.|++++.++.+|.|.|.+.+
T Consensus 210 siygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksg 283 (298)
T KOG0111|consen 210 SIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSG 283 (298)
T ss_pred ccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCC
Confidence 6899999999999999999999999999999999999999886 999999999999999999999998765
No 31
>KOG0880|consensus
Probab=99.67 E-value=2.5e-17 Score=142.31 Aligned_cols=65 Identities=55% Similarity=0.831 Sum_probs=61.6
Q ss_pred CCCccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeee
Q psy13279 128 TGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQ 192 (287)
Q Consensus 128 ~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~ 192 (287)
+|+.|+||.++++||+.|+|.++|.||||+.+|++++||||||+.+. ++++|||++..+++++..
T Consensus 110 tGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~ 178 (217)
T KOG0880|consen 110 TGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRK 178 (217)
T ss_pred CCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHH
Confidence 56889999999999999999999999999999999999999999986 999999999999999853
No 32
>KOG0881|consensus
Probab=99.59 E-value=1.7e-16 Score=128.37 Aligned_cols=63 Identities=54% Similarity=0.815 Sum_probs=58.8
Q ss_pred CCccccCcccccC-cccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeee
Q psy13279 129 GGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFT 191 (287)
Q Consensus 129 g~~~~~~~~~~~e-~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~ 191 (287)
|+.|+||..+++| ...|+|+.+|.|+||+.+||+++|||||+|++. +++++||+|..++.++.
T Consensus 71 GGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vik 138 (164)
T KOG0881|consen 71 GGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIK 138 (164)
T ss_pred CccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHH
Confidence 5778999999999 568999999999999999999999999999997 99999999999998873
No 33
>KOG0879|consensus
Probab=99.55 E-value=2.5e-15 Score=122.98 Aligned_cols=62 Identities=50% Similarity=0.730 Sum_probs=57.7
Q ss_pred CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeee
Q psy13279 130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFT 191 (287)
Q Consensus 130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~ 191 (287)
..++|+.++++||+.++|+.+|+|+||+++++++++||||+..+. +++.+||+++.++-++.
T Consensus 87 ~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~r 152 (177)
T KOG0879|consen 87 VASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMR 152 (177)
T ss_pred EEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhh
Confidence 568999999999999999999999999999999999999999987 99999999998877663
No 34
>KOG0883|consensus
Probab=99.47 E-value=2.2e-14 Score=134.78 Aligned_cols=70 Identities=53% Similarity=0.717 Sum_probs=62.9
Q ss_pred CCCCCccccCcccccCc-ccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeee
Q psy13279 126 NGTGGKSIYGNKFEDEN-FVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQ 195 (287)
Q Consensus 126 ~~~g~~~~~~~~~~~e~-~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~Q 195 (287)
.|.|+.||||.++.+|. ..+.|+.+|+||||+++||+++|||||+..+. +++++||+++-++.++..|..
T Consensus 336 TG~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEn 410 (518)
T KOG0883|consen 336 TGRGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMEN 410 (518)
T ss_pred CCCCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhc
Confidence 04578999999999995 58999999999999999999999999999997 899999999999999865554
No 35
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3e-14 Score=121.10 Aligned_cols=61 Identities=36% Similarity=0.524 Sum_probs=54.4
Q ss_pred cccCcccccccC--CCceeccccC-CCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeeccc
Q psy13279 138 FEDENFVLKHTG--PGVLSMANSG-PNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGD 198 (287)
Q Consensus 138 ~~~e~~~~~h~~--~G~l~ma~~~-~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd 198 (287)
+++|+....|++ +|+||||+.+ |++++|||||++.+. ++|++||+|..+++++++|.++.-
T Consensus 68 f~~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~ 135 (158)
T COG0652 68 FKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDT 135 (158)
T ss_pred CcccccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCc
Confidence 577877777776 9999999999 999999999999987 799999999999999988888743
No 36
>KOG0865|consensus
Probab=99.44 E-value=7.2e-14 Score=119.70 Aligned_cols=69 Identities=59% Similarity=0.950 Sum_probs=62.9
Q ss_pred CCccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279 129 GGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG 197 (287)
Q Consensus 129 g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG 197 (287)
|+.|+|++++++|++.++|+.+|.|+||+.+|++++||||||+.+. +++++||++.++++++..|..-|
T Consensus 77 ggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~g 149 (167)
T KOG0865|consen 77 GGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFG 149 (167)
T ss_pred cceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccC
Confidence 3678999999999999999999999999999999999999999976 89999999999999986666533
No 37
>KOG0882|consensus
Probab=99.40 E-value=1.6e-13 Score=131.26 Aligned_cols=73 Identities=44% Similarity=0.616 Sum_probs=66.1
Q ss_pred CCCCCccccCcccccCc-ccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeeccc
Q psy13279 126 NGTGGKSIYGNKFEDEN-FVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGD 198 (287)
Q Consensus 126 ~~~g~~~~~~~~~~~e~-~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd 198 (287)
.|+|+.||||..+++|. +.|+|+++-+||||+.+||++||||||++.+. +++++||++..+++++.++.|..-
T Consensus 463 ~gtggesiwg~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t 540 (558)
T KOG0882|consen 463 DGTGGESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKT 540 (558)
T ss_pred CCCCCcccccccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhccc
Confidence 04678999999999995 58999999999999999999999999999886 999999999999999987877654
No 38
>KOG0884|consensus
Probab=99.38 E-value=2.2e-13 Score=109.79 Aligned_cols=63 Identities=49% Similarity=0.637 Sum_probs=57.7
Q ss_pred CCccccCcccccCcc-cccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeee
Q psy13279 129 GGKSIYGNKFEDENF-VLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFT 191 (287)
Q Consensus 129 g~~~~~~~~~~~e~~-~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~ 191 (287)
|+.|+||.++++|.. -++|+-+|+|+||+++|++++|||||+.+++ -+|++||+++.+++.++
T Consensus 62 gg~siwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etld 129 (161)
T KOG0884|consen 62 GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLD 129 (161)
T ss_pred CCccccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHH
Confidence 467899999999965 6899999999999999999999999999998 69999999999888874
No 39
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=99.37 E-value=3.6e-13 Score=115.41 Aligned_cols=64 Identities=53% Similarity=0.807 Sum_probs=56.1
Q ss_pred cCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279 134 YGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG 197 (287)
Q Consensus 134 ~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG 197 (287)
|+..+++|+..++|+++|+|+||+.++++++|||||++.+. ++|++||+|+++++++++|.+..
T Consensus 81 ~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~ 148 (164)
T cd01926 81 YGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVG 148 (164)
T ss_pred cCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCC
Confidence 35567788888999999999999999999999999999886 79999999999999997776544
No 40
>PTZ00060 cyclophilin; Provisional
Probab=99.34 E-value=6.3e-13 Score=115.93 Aligned_cols=65 Identities=51% Similarity=0.758 Sum_probs=56.9
Q ss_pred cCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeeccc
Q psy13279 134 YGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGD 198 (287)
Q Consensus 134 ~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd 198 (287)
|+..+++|...++|+++|+|+||+.++++++|||||++.+. ++|++||+|+++++++++|...+.
T Consensus 97 ~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~ 165 (183)
T PTZ00060 97 YGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT 165 (183)
T ss_pred cccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCC
Confidence 35567778888899999999999999999999999999885 799999999999999988876543
No 41
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=99.32 E-value=8.4e-13 Score=115.46 Aligned_cols=64 Identities=53% Similarity=0.791 Sum_probs=55.2
Q ss_pred cCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEE-EEeeeeeeeeecc
Q psy13279 134 YGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYY-IFLTRFTQMCQGG 197 (287)
Q Consensus 134 ~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~-~g~~vi~~m~QgG 197 (287)
|+..+++|+..++|+++|+|+||+.++++++|||||++.+. ++|++||+|+ .+++++++|....
T Consensus 99 ~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~ 167 (186)
T PLN03149 99 YGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVA 167 (186)
T ss_pred cCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCC
Confidence 35567778778899999999999999999999999999886 8999999999 6999987765544
No 42
>KOG0885|consensus
Probab=99.12 E-value=4.9e-11 Score=111.92 Aligned_cols=56 Identities=43% Similarity=0.687 Sum_probs=52.2
Q ss_pred CCccccCcccccC-cccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEE
Q psy13279 129 GGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYY 184 (287)
Q Consensus 129 g~~~~~~~~~~~e-~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~ 184 (287)
|+.+|||.++.+| .+.++.+++|+|+||+.+.+.+|||||++|++. +++++||++.
T Consensus 74 Ggesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVt 134 (439)
T KOG0885|consen 74 GGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVT 134 (439)
T ss_pred CccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeec
Confidence 5779999999999 568999999999999999999999999999997 8999999987
No 43
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.11 E-value=6.5e-11 Score=102.69 Aligned_cols=57 Identities=28% Similarity=0.358 Sum_probs=49.3
Q ss_pred cCcccccccCCCceeccccC--CCCCCCceeEEeee-------c----cceeeeEEEEEEeeeeeeeeec
Q psy13279 140 DENFVLKHTGPGVLSMANSG--PNTNGSQFFLCTTS-------I----NKHYYYYYYYIFLTRFTQMCQG 196 (287)
Q Consensus 140 ~e~~~~~h~~~G~l~ma~~~--~~s~~SqFfI~l~~-------~----g~~~vfG~v~~g~~vi~~m~Qg 196 (287)
+++..++|+++|+||||+.+ +++++|||||++.+ . ++|++||+|.+++++++.|..+
T Consensus 96 ~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I~~g 165 (176)
T cd01924 96 DEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKVG 165 (176)
T ss_pred ccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhhcCC
Confidence 45677889999999999987 69999999999983 2 8999999999999999777554
No 44
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=99.08 E-value=5.3e-11 Score=100.37 Aligned_cols=63 Identities=44% Similarity=0.568 Sum_probs=54.7
Q ss_pred CcccccCcc-cccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279 135 GNKFEDENF-VLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG 197 (287)
Q Consensus 135 ~~~~~~e~~-~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG 197 (287)
+..+++|.. .++|.++|+|+||+.++++++|||||++.+. ++|++||+|..+++++.+|.+..
T Consensus 65 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~ 132 (148)
T cd01927 65 GKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVK 132 (148)
T ss_pred CCccccccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCC
Confidence 456777754 7889989999999999999999999999886 89999999999999997776654
No 45
>PTZ00221 cyclophilin; Provisional
Probab=99.07 E-value=5.4e-11 Score=108.15 Aligned_cols=63 Identities=25% Similarity=0.314 Sum_probs=56.7
Q ss_pred CcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279 135 GNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG 197 (287)
Q Consensus 135 ~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG 197 (287)
|..+++|++.++|+++|+|+||+.++++++|||||++.+. ++|++||+|+.+++++++|.+..
T Consensus 134 G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~ 200 (249)
T PTZ00221 134 GTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLP 200 (249)
T ss_pred CCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCC
Confidence 4568889889999999999999999999999999999986 89999999999999987776553
No 46
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=99.03 E-value=8.7e-11 Score=98.88 Aligned_cols=62 Identities=48% Similarity=0.686 Sum_probs=53.7
Q ss_pred CcccccC-cccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeec
Q psy13279 135 GNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQG 196 (287)
Q Consensus 135 ~~~~~~e-~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~Qg 196 (287)
+.++++| ...++|+++|+|+||+.++++++|||||++.+. ++|++||+|.++++++++|.+.
T Consensus 65 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~ 131 (146)
T cd01922 65 GKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEV 131 (146)
T ss_pred CCCcccccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhC
Confidence 4456777 457889999999999999999999999999886 8999999999999998776654
No 47
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=99.02 E-value=1.4e-10 Score=98.30 Aligned_cols=64 Identities=41% Similarity=0.522 Sum_probs=55.2
Q ss_pred cCcccccCcc-cccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279 134 YGNKFEDENF-VLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG 197 (287)
Q Consensus 134 ~~~~~~~e~~-~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG 197 (287)
|+..+++|.. .++|+++|+|+||+.++++++|||||++.+. ++|++||+|.++++++++|.+..
T Consensus 67 ~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~ 135 (153)
T cd01928 67 WGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLP 135 (153)
T ss_pred CCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCC
Confidence 3556777864 6788899999999999999999999999886 89999999999999997776654
No 48
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=99.02 E-value=1.2e-10 Score=99.36 Aligned_cols=65 Identities=48% Similarity=0.588 Sum_probs=56.6
Q ss_pred ccCcccccCc-ccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279 133 IYGNKFEDEN-FVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG 197 (287)
Q Consensus 133 ~~~~~~~~e~-~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG 197 (287)
+|+..+++|. ..++|+++|+|+||++++++++|||||++.+. ++|++||+|..+++++++|.+..
T Consensus 65 ~~g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~ 134 (159)
T cd01923 65 IWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVP 134 (159)
T ss_pred ccCCccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCC
Confidence 4567788884 46789999999999999999999999999886 89999999999999988777664
No 49
>KOG0415|consensus
Probab=99.01 E-value=1.5e-10 Score=108.08 Aligned_cols=55 Identities=36% Similarity=0.405 Sum_probs=49.9
Q ss_pred ccccC-cccccccCCCceeccccCCCCCCCceeEEeeec-----cceeeeEEEEEEeeeee
Q psy13279 137 KFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI-----NKHYYYYYYYIFLTRFT 191 (287)
Q Consensus 137 ~~~~e-~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~-----g~~~vfG~v~~g~~vi~ 191 (287)
.+.+| .+.++|.+.|+|||++.+.+-+||||||+|++. ++|++||+|.++++++.
T Consensus 77 ffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~ 137 (479)
T KOG0415|consen 77 FFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLT 137 (479)
T ss_pred hhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHH
Confidence 46667 468999999999999999999999999999998 89999999999998873
No 50
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=98.95 E-value=4.5e-10 Score=98.57 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=49.8
Q ss_pred ccccCcccccccCCCceeccccC-CCCCCCceeEEeeec---------cceeeeEEEEEEeeeeeeeeecc
Q psy13279 137 KFEDENFVLKHTGPGVLSMANSG-PNTNGSQFFLCTTSI---------NKHYYYYYYYIFLTRFTQMCQGG 197 (287)
Q Consensus 137 ~~~~e~~~~~h~~~G~l~ma~~~-~~s~~SqFfI~l~~~---------g~~~vfG~v~~g~~vi~~m~QgG 197 (287)
++++|....+|+++|+|+||+.+ +++++|||||++.+. ++|++||+|.++++++++|.+..
T Consensus 96 ~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~ 166 (190)
T PRK10903 96 PIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVP 166 (190)
T ss_pred cccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCC
Confidence 35556545567779999999876 999999999999875 28999999999999997776654
No 51
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=98.92 E-value=4.7e-10 Score=96.34 Aligned_cols=61 Identities=31% Similarity=0.431 Sum_probs=51.6
Q ss_pred cccccCc-ccccccCCCceeccccCCCCCCCceeEEeee-c----cceeeeEEEEEEeeeeeeeeec
Q psy13279 136 NKFEDEN-FVLKHTGPGVLSMANSGPNTNGSQFFLCTTS-I----NKHYYYYYYYIFLTRFTQMCQG 196 (287)
Q Consensus 136 ~~~~~e~-~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~-~----g~~~vfG~v~~g~~vi~~m~Qg 196 (287)
..+++|. ..++|+++|+|+||+.++++++|||||++.+ . ++|++||+|+.+++++.+|.+.
T Consensus 73 ~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~ 139 (166)
T cd01921 73 RFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDA 139 (166)
T ss_pred cccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcC
Confidence 3456664 4788999999999999999999999999975 2 8999999999999998776554
No 52
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=98.75 E-value=1e-08 Score=88.57 Aligned_cols=52 Identities=40% Similarity=0.660 Sum_probs=45.3
Q ss_pred ccCcccccCcc-cccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEE
Q psy13279 133 IYGNKFEDENF-VLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYY 184 (287)
Q Consensus 133 ~~~~~~~~e~~-~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~ 184 (287)
+|+..+++|.. .++|+++|+|+||+.++++++|||||++.+. ++|++||+|.
T Consensus 71 ~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~ 127 (171)
T cd01925 71 IYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVT 127 (171)
T ss_pred cCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEE
Confidence 45667777854 5778999999999999999999999999886 8999999997
No 53
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=98.69 E-value=6e-09 Score=88.52 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=48.3
Q ss_pred cccCcccccccCCCceeccccC-CCCCCCceeEEeeec----c-----ceeeeEEEEEEeeeeeeeeecc
Q psy13279 138 FEDENFVLKHTGPGVLSMANSG-PNTNGSQFFLCTTSI----N-----KHYYYYYYYIFLTRFTQMCQGG 197 (287)
Q Consensus 138 ~~~e~~~~~h~~~G~l~ma~~~-~~s~~SqFfI~l~~~----g-----~~~vfG~v~~g~~vi~~m~QgG 197 (287)
+++|....+|+++|+||||+.+ +++++|||||++.+. + +|++||+|..+++++++|.+..
T Consensus 66 ~~~e~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~ 135 (155)
T cd01920 66 IKNEAGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVE 135 (155)
T ss_pred ccCcccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCC
Confidence 3445444556779999999976 899999999999885 2 6899999999999987776553
No 54
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=98.58 E-value=1.9e-08 Score=86.34 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=46.1
Q ss_pred ccCcccccccCCCceeccccC-CCCCCCceeEEeeec------------cceeeeEEEEEEeeeeeeeeec
Q psy13279 139 EDENFVLKHTGPGVLSMANSG-PNTNGSQFFLCTTSI------------NKHYYYYYYYIFLTRFTQMCQG 196 (287)
Q Consensus 139 ~~e~~~~~h~~~G~l~ma~~~-~~s~~SqFfI~l~~~------------g~~~vfG~v~~g~~vi~~m~Qg 196 (287)
++|....+++.+|+||||+.+ |++++|||||++.+. ++|++||+|.++++++++|.+.
T Consensus 69 ~~e~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~ 139 (164)
T PRK10791 69 KNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGV 139 (164)
T ss_pred CCcccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcC
Confidence 344333344569999999875 999999999999874 2699999999999999777654
No 55
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=98.57 E-value=2.5e-08 Score=83.24 Aligned_cols=62 Identities=47% Similarity=0.662 Sum_probs=52.4
Q ss_pred ccccCccccc-ccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeeccc
Q psy13279 137 KFEDENFVLK-HTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGD 198 (287)
Q Consensus 137 ~~~~e~~~~~-h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd 198 (287)
.+++|..... |+++|+|+|++.++++.+|||||++.+. +++++||+|..+++++++|.....
T Consensus 66 ~~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~ 132 (146)
T cd00317 66 KFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDT 132 (146)
T ss_pred ccCCccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCC
Confidence 5667765444 8889999999999999999999999765 799999999999999977776653
No 56
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=98.26 E-value=3.6e-07 Score=76.85 Aligned_cols=60 Identities=32% Similarity=0.402 Sum_probs=49.9
Q ss_pred ccccCcc-cccccCCCceeccccC--CCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeec
Q psy13279 137 KFEDENF-VLKHTGPGVLSMANSG--PNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQG 196 (287)
Q Consensus 137 ~~~~e~~-~~~h~~~G~l~ma~~~--~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~Qg 196 (287)
++++|.. .++++++|+|+|++.+ +++.+|||||+|.+. +++++||+|..+++++++|...
T Consensus 72 ~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~ 138 (155)
T PF00160_consen 72 PIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAG 138 (155)
T ss_dssp CBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTS
T ss_pred ccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCC
Confidence 4777863 4444479999999875 889999999999985 7899999999999998777663
No 57
>PRK00969 hypothetical protein; Provisional
Probab=94.69 E-value=0.26 Score=49.16 Aligned_cols=45 Identities=9% Similarity=0.207 Sum_probs=31.6
Q ss_pred cCchhhhhhhhcCCCCCCceEEEEcCCCCCCCCCccEEEEeeeccccc
Q psy13279 224 HTGPGVLSMANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWETR 271 (287)
Q Consensus 224 h~~~G~lsMA~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv~ 271 (287)
...+|++.+-+.|..+ -.-||...+-+ -.--|||+|+|+.||+-.
T Consensus 257 ~R~~GtVTVRt~G~g~--G~vYIyredr~-ss~sHtvVG~V~~GiELi 301 (508)
T PRK00969 257 PRRRGTVTVRTAGVGV--GKVYIYREDRP-SSLSHTVVGRVTHGIELI 301 (508)
T ss_pred ccccceEEEEeeccCc--eeEEEECCCCC-CCccceeEEEEecceeee
Confidence 3457888887766544 35788774433 223799999999999953
No 58
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=92.98 E-value=0.89 Score=45.35 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=35.2
Q ss_pred CCcccccccccccCchhhhhhhhcCCCCCCceEEEEcCCC-CCCCCCccEEEEeeeccccc
Q psy13279 212 GNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ-EICVKLLDLLASLDAGWETR 271 (287)
Q Consensus 212 g~~~~~E~~~~~h~~~G~lsMA~~~p~s~~SQFFIt~g~~-~~LD~~ytVfG~VieG~dv~ 271 (287)
+...+.|+. ....+|++.+-+.|..+ -.-||...+- +.| -|||+|+|+.||+-.
T Consensus 244 g~~~p~En~--~~R~rGtVTVRn~G~G~--G~VYIYredr~ss~--sHtvVG~V~~GiELi 298 (503)
T TIGR03268 244 GLDKPEENI--EKRRRGAVTVRNSGVGE--GRVYIYREDRPSSL--SHNVVGHVTRGIELI 298 (503)
T ss_pred CccCCcccc--CcccceeEEEEeeccCc--eeEEEEcCCCCCCc--ccceeEEEecceeee
Confidence 333444433 23457888887766544 3578877443 344 799999999999953
No 59
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=74.23 E-value=14 Score=37.01 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=38.2
Q ss_pred CcccccCcccccccCCCceeccccCCCCCCCceeEEeeec---cceeeeEEEEEEeeeeeeeeecc
Q psy13279 135 GNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI---NKHYYYYYYYIFLTRFTQMCQGG 197 (287)
Q Consensus 135 ~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~---g~~~vfG~v~~g~~vi~~m~QgG 197 (287)
+..++.|++ ....+|+|.+-+.+.+.. ..||...+. --|++.|++..++..++ +++.|
T Consensus 244 g~~~p~En~--~~R~rGtVTVRn~G~G~G--~VYIYredr~ss~sHtvVG~V~~GiELid-~a~~G 304 (503)
T TIGR03268 244 GLDKPEENI--EKRRRGAVTVRNSGVGEG--RVYIYREDRPSSLSHNVVGHVTRGIELID-IAQEG 304 (503)
T ss_pred CccCCcccc--CcccceeEEEEeeccCce--eEEEEcCCCCCCcccceeEEEecceeeee-cccCC
Confidence 455666663 233479998877664422 346665554 57899999999999995 44444
No 60
>PRK00969 hypothetical protein; Provisional
Probab=69.69 E-value=19 Score=36.22 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=38.4
Q ss_pred CcccccCcccccccCCCceeccccCCCCCCCceeEEeeec---cceeeeEEEEEEeeeeeeeeecc
Q psy13279 135 GNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI---NKHYYYYYYYIFLTRFTQMCQGG 197 (287)
Q Consensus 135 ~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~---g~~~vfG~v~~g~~vi~~m~QgG 197 (287)
+..++.|++. ...+|+|.+-+.+.+.. .-||...+. --|++.|++..++..++ +++.|
T Consensus 247 g~~~p~En~~--~R~~GtVTVRt~G~g~G--~vYIyredr~ss~sHtvVG~V~~GiELi~-~a~~G 307 (508)
T PRK00969 247 GLKIPEENFE--PRRRGTVTVRTAGVGVG--KVYIYREDRPSSLSHTVVGRVTHGIELID-FAKEG 307 (508)
T ss_pred CccCCccccC--ccccceEEEEeeccCce--eEEEECCCCCCCccceeEEEEecceeeee-cccCC
Confidence 4556666633 33478998877664432 346665554 57899999999999995 44444
No 61
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=55.81 E-value=14 Score=31.19 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=22.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEec
Q psy13279 12 RITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRII 50 (287)
Q Consensus 12 ~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi 50 (287)
.++.+|..|.||+||+-|.++- - |.+..+|-..
T Consensus 9 ~~~A~l~~d~AP~Tcaa~~~~L---P---~~~~~~Harw 41 (147)
T PF12903_consen 9 SFTARLLDDKAPKTCAAFWEAL---P---LKGKVIHARW 41 (147)
T ss_dssp EEEEEE-TTTSHHHHHHHHHH--------EEEE-EE-SS
T ss_pred EEEEEEcccCChHHHHHHHHhC---C---CCCcEEEEEE
Confidence 6889999999999999999986 1 4555555443
No 62
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=50.23 E-value=77 Score=31.24 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=34.4
Q ss_pred CcccccCcccccccCCCceeccccCCCCCCCceeEEeeec---cceeeeEEEEEEeeeeeeeeecc
Q psy13279 135 GNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI---NKHYYYYYYYIFLTRFTQMCQGG 197 (287)
Q Consensus 135 ~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~---g~~~vfG~v~~g~~vi~~m~QgG 197 (287)
.++++.||+.++ .+|.|++-+.+-++ -.-||.-.+- -.|.+.|++.+++..++....|.
T Consensus 246 ~~~~~~en~d~R--erG~iTvRn~Gvge--GrvYIyRedR~ss~sHnvVGrV~eGiELid~a~eGd 307 (512)
T COG4070 246 EEKVPEENFDLR--ERGAITVRNVGVGE--GRVYIYREDRPSSLSHNVVGRVIEGIELIDLAEEGD 307 (512)
T ss_pred cccCChhhhhhh--hcceEEEEeeeccc--ceEEEEecCCCCccccceeeeeecceEEEEecccCc
Confidence 345555654433 36777776654322 1234443332 45778899999999986555543
No 63
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=45.62 E-value=16 Score=35.82 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=20.3
Q ss_pred EEEEEEeCCCChHHHHHHHHHH
Q psy13279 12 RITIQLRYDLVPRTAENFRCLC 33 (287)
Q Consensus 12 ~i~ieL~~~~aP~~~~nF~~L~ 33 (287)
-|.||||.|.||+++.-|+.+.
T Consensus 377 iieIELyed~APrSv~yFRr~t 398 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRST 398 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhc
Confidence 4789999999999999999886
Done!