RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13279
(287 letters)
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 183 bits (466), Expect = 3e-58
Identities = 84/172 (48%), Positives = 94/172 (54%), Gaps = 62/172 (36%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
MDIKIG + GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP FM +
Sbjct: 16 MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQ---FMCQ- 71
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
GG+ T H GT
Sbjct: 72 ----------------GGDFTNH-------------------NGT--------------- 81
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
GGKSIYG KF+DENF+LKHTGPG+LSMANSGPNTNGSQFFL
Sbjct: 82 --------GGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 125
Score = 149 bits (380), Expect = 3e-45
Identities = 52/60 (86%), Positives = 55/60 (91%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGPNTNGSQFFL K +
Sbjct: 69 MCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTD 128
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 183 bits (466), Expect = 5e-58
Identities = 65/172 (37%), Positives = 82/172 (47%), Gaps = 62/172 (36%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
D+ ++ +GRI ++L D+VP+TA+NFR LC KG GY+GS+FHRIIP FM +
Sbjct: 32 FDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPG---FMVQ- 87
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
GG+ T H GT
Sbjct: 88 ----------------GGDYTAH-------------------NGT--------------- 97
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
GG+SIYG KF DENF LKHT G+LSMAN G +TNGSQFF+
Sbjct: 98 --------GGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLG 141
Score = 150 bits (380), Expect = 5e-45
Identities = 41/60 (68%), Positives = 47/60 (78%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
M QGGD+T HNGTGG+SIYG KF DENF LKHT G+LSMAN G +TNGSQFF+ K +
Sbjct: 85 MVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQ 144
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 180 bits (459), Expect = 6e-57
Identities = 64/172 (37%), Positives = 80/172 (46%), Gaps = 62/172 (36%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
D++IG ++VGR+ L VP+T +NF L T EKGFGY+ S FHR+I DF+
Sbjct: 20 FDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFM------ 73
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
GG+ TR GT GG
Sbjct: 74 --------------IQGGDFTRGD-------------------GT-------------GG 87
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
KSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T
Sbjct: 88 ----------KSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 129
Score = 150 bits (381), Expect = 3e-45
Identities = 41/60 (68%), Positives = 47/60 (78%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
M QGGDFT +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T K
Sbjct: 73 MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 132
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 179 bits (456), Expect = 9e-57
Identities = 75/172 (43%), Positives = 88/172 (51%), Gaps = 62/172 (36%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
DI+IG + GRI ++LR D+VPRTAENFR LCT E+GFGY FHR+IP FM +
Sbjct: 15 FDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQ---FMCQ- 70
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
GG+ + GT GG
Sbjct: 71 ----------------GGDFVKG-------------------DGT-------------GG 82
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
KSIYG KF+DENF L+H G GVLSMANSGPNTNGSQFF+CTT
Sbjct: 83 ----------KSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTT 124
Score = 149 bits (380), Expect = 3e-45
Identities = 47/60 (78%), Positives = 52/60 (86%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGGDF +GTGGKSIYG KF+DENF L+H G GVLSMANSGPNTNGSQFF+CTTK +
Sbjct: 68 MCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCD 127
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 177 bits (451), Expect = 4e-56
Identities = 72/172 (41%), Positives = 92/172 (53%), Gaps = 62/172 (36%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
+D+ + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP FM +
Sbjct: 8 LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPS---FMCQ- 63
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
G+ T H+ GT GG
Sbjct: 64 ----------------AGDFTNHN-------------------GT-------------GG 75
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
KSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT
Sbjct: 76 ----------KSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTI 117
Score = 149 bits (378), Expect = 3e-45
Identities = 49/60 (81%), Positives = 54/60 (90%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQ GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT K +
Sbjct: 61 MCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 120
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 177 bits (452), Expect = 5e-56
Identities = 76/172 (44%), Positives = 91/172 (52%), Gaps = 62/172 (36%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 27 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------ 80
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
GG+ TRH+ GT GG
Sbjct: 81 --------------CQGGDFTRHN-------------------GT-------------GG 94
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
KSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT
Sbjct: 95 ----------KSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 136
Score = 149 bits (378), Expect = 7e-45
Identities = 53/60 (88%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 80 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 139
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp
F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus}
SCOP: b.62.1.1
Length = 172
Score = 177 bits (451), Expect = 6e-56
Identities = 62/171 (36%), Positives = 77/171 (45%), Gaps = 62/171 (36%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
+ + +VGRI L VP+TA+NFR LC G GY+ S+FHRIIP+F+
Sbjct: 13 PVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFM------- 65
Query: 62 SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
GG+ TR GT
Sbjct: 66 -------------IQGGDFTRG-------------------NGT---------------- 77
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
GG+SIYG+KF DENF KH G+LSMAN+GPNTNGSQFF+ T
Sbjct: 78 -------GGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTA 121
Score = 148 bits (377), Expect = 6e-45
Identities = 41/60 (68%), Positives = 46/60 (76%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
M QGGDFT NGTGG+SIYG+KF DENF KH G+LSMAN+GPNTNGSQFF+ T
Sbjct: 65 MIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTS 124
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 176 bits (449), Expect = 9e-56
Identities = 67/172 (38%), Positives = 82/172 (47%), Gaps = 62/172 (36%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
+I I + GRI +L + VP+TA+NFR L T + GFGY+ S FHR+IP FM +
Sbjct: 7 FNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQ---FMLQ- 62
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
GG+ TRH GT GG
Sbjct: 63 ----------------GGDFTRH-------------------NGT-------------GG 74
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
KSIYG KF DENF +KHT PG+LSMAN+G NTNGSQFF+ T
Sbjct: 75 ----------KSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 116
Score = 148 bits (377), Expect = 5e-45
Identities = 44/60 (73%), Positives = 48/60 (80%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
M QGGDFT HNGTGGKSIYG KF DENF +KHT PG+LSMAN+G NTNGSQFF+ T
Sbjct: 60 MLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTS 119
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 173 bits (440), Expect = 3e-54
Identities = 74/179 (41%), Positives = 86/179 (48%), Gaps = 69/179 (38%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDF 53
DI IG + GRI ++L D+VP+TA NFR LCT E G G ++GS FHRIIP+F
Sbjct: 8 FDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNF 67
Query: 54 VSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRI 113
+ GG+ TR GT
Sbjct: 68 M--------------------IQGGDFTRG-------------------NGT-------- 80
Query: 114 NKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
GG +SIYG KF DENF KHTGPGVLSMAN+GPNTNGSQFFLCT
Sbjct: 81 -----GG----------ESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124
Score = 149 bits (379), Expect = 3e-45
Identities = 49/60 (81%), Positives = 51/60 (85%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
M QGGDFT NGTGG+SIYG KF DENF KHTGPGVLSMAN+GPNTNGSQFFLCT K E
Sbjct: 68 MIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTE 127
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 172 bits (438), Expect = 4e-54
Identities = 62/178 (34%), Positives = 73/178 (41%), Gaps = 68/178 (38%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK------GFGYQGSSFHRIIPDFV 54
DI I GRI +L D+ PRT ENFR LCT EK Y+ S FHRIIP F+
Sbjct: 8 FDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFM 67
Query: 55 SFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRIN 114
GG+ T G+
Sbjct: 68 --------------------CQGGDITNG-------------------NGS--------- 79
Query: 115 KMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
GG +SIYG F DENF +KH PG+LSMAN+GPNTN SQFF+
Sbjct: 80 ----GG----------ESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Score = 149 bits (380), Expect = 2e-45
Identities = 39/60 (65%), Positives = 45/60 (75%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
MCQGGD TN NG+GG+SIYG F DENF +KH PG+LSMAN+GPNTN SQFF+
Sbjct: 67 MCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCP 126
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 171 bits (437), Expect = 7e-54
Identities = 64/172 (37%), Positives = 75/172 (43%), Gaps = 63/172 (36%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
D+ I + +GRITI L P T ENFR LCT E GFGY+ S FHR+I +F+
Sbjct: 16 FDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFM------ 69
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
GG+ T GT GG
Sbjct: 70 --------------IQGGDFTNF-------------------DGT-------------GG 83
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
KSIYG KF DEN +KH G LSMAN+GPNTNGSQFF+ T
Sbjct: 84 ----------KSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124
Score = 141 bits (359), Expect = 4e-42
Identities = 41/60 (68%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
M QGGDFTN +GTGGKSIYG KF DEN +KH G LSMAN+GPNTNGSQFF+ T
Sbjct: 69 MIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTP 127
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 172 bits (438), Expect = 3e-53
Identities = 34/185 (18%), Positives = 57/185 (30%), Gaps = 56/185 (30%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
MDI + + +GR+ I+L D P ENF L +
Sbjct: 19 MDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVN------------------- 59
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINK--MCQ 118
+ G + +++ I + G K F H +
Sbjct: 60 --------------SNGTGKYKYNRHINRTYE--------GCK--F--H--NVLHNNYIV 91
Query: 119 GGDFTNHNGTGGKSIYGNKFED---ENFVLKHTGPGVLSMA----NSGPNTNGSQFFLCT 171
GD N NG+ ++Y ++ ++ H G+LS+ SG S F +
Sbjct: 92 SGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDSTFMITL 151
Query: 172 TSINK 176
I
Sbjct: 152 DDIRP 156
Score = 131 bits (330), Expect = 3e-37
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFED---ENFILKHTGPGVLSMA----NSGPNTNGSQFF 245
GD N NG+ ++Y ++ ++ H G+LS+ SG S F
Sbjct: 89 YIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDSTFM 148
Query: 246 LCTTKQEICVKL--LD 259
+ L LD
Sbjct: 149 ITLDDIRPSNVLDELD 164
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 150 bits (382), Expect = 2e-45
Identities = 39/60 (65%), Positives = 46/60 (76%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
M QGGDFT +GTGG+SIYG+KF DENF+ H P +LSMAN+GPNTNGSQFF+ T
Sbjct: 84 MIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCP 143
Score = 147 bits (373), Expect = 4e-44
Identities = 40/57 (70%), Positives = 46/57 (80%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
M QGGDFT +GTGG+SIYG+KF DENFV H P +LSMAN+GPNTNGSQFF+ T
Sbjct: 84 MIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTV 140
Score = 96.1 bits (240), Expect = 2e-24
Identities = 35/60 (58%), Positives = 38/60 (63%), Gaps = 7/60 (11%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDF 53
DI IG+ GRIT++L D VP TAENFR LCT EKG G Y GS FHRIIP F
Sbjct: 24 FDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQF 83
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 148 bits (375), Expect = 2e-44
Identities = 37/58 (63%), Positives = 44/58 (75%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
M QGGDF N +GTG SIY F DENF L+H+ PG+LSMANSGP+TNG QFF+ +K
Sbjct: 73 MIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSK 130
Score = 146 bits (370), Expect = 9e-44
Identities = 38/66 (57%), Positives = 45/66 (68%), Gaps = 4/66 (6%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI- 174
M QGGDF N +GTG SIY F DENF L+H+ PG+LSMANSGP+TNG QFF+ +
Sbjct: 73 MIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCD 132
Query: 175 ---NKH 177
KH
Sbjct: 133 WLDGKH 138
Score = 97.2 bits (243), Expect = 5e-25
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-----KGFGYQGSSFHRIIPDFV 54
D+ IG QEVGR+ I+L D+VP+TAENFR CT E GY+GS+FHR+I DF+
Sbjct: 15 FDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFM 73
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 148 bits (375), Expect = 6e-44
Identities = 42/60 (70%), Positives = 47/60 (78%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
M QGGDF NHNG+G SIYG KF+DENF +KH G+LSMANSGPNTNG QFF+ T K E
Sbjct: 122 MIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCE 181
Score = 145 bits (369), Expect = 5e-43
Identities = 40/57 (70%), Positives = 45/57 (78%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
M QGGDF NHNG+G SIYG KF+DENF +KH G+LSMANSGPNTNG QFF+ T
Sbjct: 122 MIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTK 178
Score = 97.5 bits (243), Expect = 2e-24
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF-----GYQGSSFHRIIPDF 53
MDI +G +G+ +L ++VP+T+ENFR CT E GY+ + FHR+I +F
Sbjct: 64 MDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEF 121
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 145 bits (368), Expect = 2e-43
Identities = 39/58 (67%), Positives = 46/58 (79%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
M QGGDFT +GTGG+SIYG F+DE F++KH P V+SMAN GPNTNGSQFF+ TT
Sbjct: 72 MIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTP 129
Score = 143 bits (364), Expect = 7e-43
Identities = 40/57 (70%), Positives = 46/57 (80%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
M QGGDFT +GTGG+SIYG F+DE FV+KH P V+SMAN GPNTNGSQFF+ TT
Sbjct: 72 MIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTT 128
Score = 97.6 bits (244), Expect = 4e-25
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
+D+ I GRI ++L D+ PRT NF LCT G G Y+GS+FHR+I +
Sbjct: 11 LDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKN 70
Query: 53 F 53
F
Sbjct: 71 F 71
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 146 bits (370), Expect = 2e-43
Identities = 37/58 (63%), Positives = 43/58 (74%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
M QGGDF+ NG GG+SIYG F+DENFILKH +LSMAN G +TNGSQFF+ T
Sbjct: 85 MIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKP 142
Score = 144 bits (365), Expect = 7e-43
Identities = 36/57 (63%), Positives = 43/57 (75%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
M QGGDF+ NG GG+SIYG F+DENF+LKH +LSMAN G +TNGSQFF+ T
Sbjct: 85 MIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTK 141
Score = 98.4 bits (246), Expect = 3e-25
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 8/61 (13%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
DI+I ++ VGRI QL D+ P+T +NF CLC+ EKG G Y+GS+FHR++ +
Sbjct: 24 FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKN 83
Query: 53 F 53
F
Sbjct: 84 F 84
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 144 bits (367), Expect = 2e-43
Identities = 35/58 (60%), Positives = 42/58 (72%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
M QGGDF+ NG GG+SIYG FEDE+F +KH +LSMAN G +TNGSQFF+ T
Sbjct: 75 MVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKP 132
Score = 143 bits (363), Expect = 1e-42
Identities = 35/57 (61%), Positives = 42/57 (73%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
M QGGDF+ NG GG+SIYG FEDE+F +KH +LSMAN G +TNGSQFF+ T
Sbjct: 75 MVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTK 131
Score = 98.0 bits (245), Expect = 3e-25
Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
DI I Q GR+ +L D+ P+T ENFRCLCT EKG G Y+ FHR++ D
Sbjct: 14 FDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKD 73
Query: 53 F 53
F
Sbjct: 74 F 74
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 143 bits (363), Expect = 1e-40
Identities = 41/60 (68%), Positives = 46/60 (76%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
M QGGDF+N NGTGG+SIYG KFEDENF KH G+LSMAN+G NTNGSQFF+ T
Sbjct: 81 MIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTP 140
Score = 141 bits (356), Expect = 1e-39
Identities = 43/66 (65%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI- 174
M QGGDF+N NGTGG+SIYG KFEDENF KH G+LSMAN+G NTNGSQFF+ T
Sbjct: 81 MIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTP 140
Query: 175 ---NKH 177
KH
Sbjct: 141 HLDGKH 146
Score = 100 bits (252), Expect = 9e-25
Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 8/62 (12%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
D+ IG + VGRI ++L D+VP+TAENFR LCT EKG G ++G FHRII
Sbjct: 20 FDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKK 79
Query: 53 FV 54
F+
Sbjct: 80 FM 81
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 107 bits (269), Expect = 6e-29
Identities = 35/60 (58%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
M Q GD + +GTGG+SI+GN+FEDE F L H+ P ++SMAN GPNTNGSQFF+ T
Sbjct: 55 MVQTGDPSG-DGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPC 113
Score = 106 bits (267), Expect = 1e-28
Identities = 37/67 (55%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENF-VLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
M Q GD + +GTGG+SI+GN+FEDE F L H+ P ++SMAN GPNTNGSQFF+ T
Sbjct: 55 MVQTGDPSG-DGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPC 113
Query: 175 ----NKH 177
KH
Sbjct: 114 PWLDFKH 120
Score = 57.6 bits (140), Expect = 1e-10
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
+G I I L Y +T +NF G+ Y FHR+I F
Sbjct: 14 MGDIHISLFYKECKKTVQNFSVHSI--NGY-YNNCIFHRVIKHF 54
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 106 bits (267), Expect = 1e-28
Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
M Q GD T G GG+SI+G +FEDE + L+H P LSMAN+G NTNGSQFF+
Sbjct: 71 MIQTGDPTG-TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPT 129
Score = 106 bits (266), Expect = 2e-28
Identities = 35/67 (52%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
M Q GD T G GG+SI+G +FEDE + L+H P LSMAN+G NTNGSQFF+
Sbjct: 71 MIQTGDPTG-TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPT 129
Query: 175 ----NKH 177
NKH
Sbjct: 130 PWLDNKH 136
Score = 59.2 bits (144), Expect = 5e-11
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
D I +G I +L P+T ENF G+ Y G +FHRII F
Sbjct: 22 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGF 70
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 107 bits (268), Expect = 2e-28
Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
M QGGD T G GG SIYG +FEDE + LK TG G+L+MAN+GP+TNGSQFF+
Sbjct: 61 MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119
Score = 106 bits (266), Expect = 4e-28
Identities = 37/67 (55%), Positives = 44/67 (65%), Gaps = 6/67 (8%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
M QGGD T G GG SIYG +FEDE + LK TG G+L+MAN+GP+TNGSQFF+
Sbjct: 61 MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119
Query: 175 ----NKH 177
KH
Sbjct: 120 QWLDGKH 126
Score = 59.3 bits (144), Expect = 7e-11
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
+G I ++L + P+T +NF L +G+ Y G+ FHRII DF
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDF 60
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 104 bits (263), Expect = 5e-28
Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
M QGGD T G GG SIYG +FEDE + LK TG G+L+MAN+GP+TNGSQFF+
Sbjct: 61 MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119
Score = 104 bits (261), Expect = 8e-28
Identities = 37/67 (55%), Positives = 44/67 (65%), Gaps = 6/67 (8%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
M QGGD T G GG SIYG +FEDE + LK TG G+L+MAN+GP+TNGSQFF+
Sbjct: 61 MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119
Query: 175 ----NKH 177
KH
Sbjct: 120 QWLDGKH 126
Score = 57.6 bits (140), Expect = 2e-10
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
+G I ++L + P+T +NF L +G+ Y G+ FHRII DF
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDF 60
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 103 bits (260), Expect = 2e-27
Identities = 37/60 (61%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
+ QGGD T G GGKSIYG FEDE N LKHTG G+LSM+N+GPNTN SQFF+
Sbjct: 88 VIQGGDPTG-TGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPL 146
Score = 103 bits (259), Expect = 4e-27
Identities = 39/67 (58%), Positives = 45/67 (67%), Gaps = 6/67 (8%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
+ QGGD T G GGKSIYG FEDE N LKHTG G+LSM+N+GPNTN SQFF+ +
Sbjct: 88 VIQGGDPTG-TGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPL 146
Query: 175 ----NKH 177
KH
Sbjct: 147 PHLDGKH 153
Score = 57.7 bits (140), Expect = 3e-10
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
+G ++L + P+T NF LC E GF Y + FHR+IP+F
Sbjct: 47 LGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNF 87
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 96.9 bits (242), Expect = 4e-25
Identities = 37/60 (61%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
M Q GD T G GG SI+G KFEDE + LKH GV+SMAN+GPNTNGSQFF+ KQ
Sbjct: 50 MVQTGDPTG-TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQ 108
Score = 96.1 bits (240), Expect = 1e-24
Identities = 35/54 (64%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFF 168
M Q GD T G GG SI+G KFEDE + LKH GV+SMAN+GPNTNGSQFF
Sbjct: 50 MVQTGDPTG-TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFF 102
Score = 53.3 bits (129), Expect = 6e-09
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
VG I I++ + P+T ENF LC + Y G FHR I F
Sbjct: 9 VGDIKIEVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGF 49
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 95.4 bits (238), Expect = 3e-24
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 6/67 (8%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
+ QGGD T G+GG+SIYG F+DE + L+ G+++MAN+G + NGSQFF
Sbjct: 74 IVQGGDPTG-TGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRA 132
Query: 175 ----NKH 177
NKH
Sbjct: 133 DELNNKH 139
Score = 95.4 bits (238), Expect = 4e-24
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
+ QGGD T G+GG+SIYG F+DE + L+ G+++MAN+G + NGSQFF +
Sbjct: 74 IVQGGDPTG-TGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRA 132
Query: 252 E 252
+
Sbjct: 133 D 133
Score = 52.3 bits (126), Expect = 2e-08
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
G I I+L P+ NF LC + + Y + FHR++P F+
Sbjct: 33 AGDIDIELWSKEAPKACRNFIQLC--LEAY-YDNTIFHRVVPGFI 74
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 95.5 bits (238), Expect = 4e-24
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
+ QGGD T GTGG+S +G F+DE L HTG G+LSMANSGPN+N SQFF+
Sbjct: 69 VIQGGDPTG-TGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSC 127
Score = 95.5 bits (238), Expect = 5e-24
Identities = 36/67 (53%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
+ QGGD T GTGG+S +G F+DE L HTG G+LSMANSGPN+N SQFF+ S
Sbjct: 69 VIQGGDPTG-TGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSC 127
Query: 175 ----NKH 177
KH
Sbjct: 128 AYLDKKH 134
Score = 54.3 bits (131), Expect = 4e-09
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
G + ++L DL P+T ENF LC +K + Y G+ FHR I +F
Sbjct: 28 KGDLNLELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNF 68
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 93.5 bits (233), Expect = 2e-23
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 6/64 (9%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFI-LKHTGPGVLSMANSG----PNTNGSQFFLC 247
+ QGGD T G GG+SIYG F+DE + LK+ G+LSMA+ G PNTNGSQFF+
Sbjct: 66 IIQGGDPTG-TGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFIT 124
Query: 248 TTKQ 251
+
Sbjct: 125 YSSL 128
Score = 93.5 bits (233), Expect = 2e-23
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 10/71 (14%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENF-VLKHTGPGVLSMANSG----PNTNGSQFFLC 170
+ QGGD T G GG+SIYG F+DE + LK+ G+LSMA+ G PNTNGSQFF+
Sbjct: 66 IIQGGDPTG-TGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFIT 124
Query: 171 TTSI----NKH 177
+S+ ++
Sbjct: 125 YSSLPQLNGEY 135
Score = 54.6 bits (132), Expect = 3e-09
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
G + +L P+ +NF L G+ Y+ + FH+ I F
Sbjct: 25 YGDLKFELFCSQCPKACKNFLALS--ASGY-YKNTIFHKNIKGF 65
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 89.7 bits (223), Expect = 8e-22
Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 16/78 (20%)
Query: 116 MCQGGDFTNH----NGTGGKSIY-------GNKFEDE-NFVLKHTGPGVLSMANSGPNTN 163
M QGG +S G FEDE + L H G GVLSMAN G ++N
Sbjct: 56 MIQGGRAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSN 115
Query: 164 GSQFFLCTTSI----NKH 177
S+FF+ S NKH
Sbjct: 116 LSEFFITFKSCEHLNNKH 133
Score = 89.3 bits (222), Expect = 9e-22
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Query: 193 MCQGGDFTNH----NGTGGKSIY-------GNKFEDE-NFILKHTGPGVLSMANSGPNTN 240
M QGG +S G FEDE + L H G GVLSMAN G ++N
Sbjct: 56 MIQGGRAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSN 115
Query: 241 GSQFFLCTTKQ 251
S+FF+
Sbjct: 116 LSEFFITFKSC 126
Score = 58.1 bits (141), Expect = 2e-10
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
G + I+L D+ PR ++F LC + + + FHR I +F
Sbjct: 15 QGSLNIELHADMAPRACDSFLRLC--AVKY-FDDTIFHRCIRNF 55
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
rotamase, structural proteomics in europe, spine; 2.6A
{Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 84.4 bits (209), Expect = 6e-20
Identities = 34/94 (36%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 162 TNGSQFFLCTTSINKHYYYYYYYIF---LTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE 218
+ S +Y +F + F M QGGD T G GG G KF DE
Sbjct: 56 QGTKDYSTQNASGGPSGPFYDGAVFHRVIQGF--MIQGGDPTG-TGRGGP---GYKFADE 109
Query: 219 -NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
+ L+ P +L+MAN+GP TNGSQFF+ K
Sbjct: 110 FHPELQFDKPYLLAMANAGPGTNGSQFFITVGKT 143
Score = 83.6 bits (207), Expect = 1e-19
Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
M QGGD T G GG G KF DE + L+ P +L+MAN+GP TNGSQFF+
Sbjct: 88 MIQGGDPTG-TGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKT 143
Query: 175 ----NKH 177
+H
Sbjct: 144 PHLNRRH 150
Score = 50.1 bits (120), Expect = 1e-07
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 12/55 (21%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFG------------YQGSSFHRIIPDF 53
G I I L + P+T NF L K + Y G+ FHR+I F
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGF 87
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 78.3 bits (193), Expect = 2e-17
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 24/84 (28%)
Query: 116 MCQGGDFTNHNGTGGK--SIYGNKFEDENFV--LKHTGPGVLSMANSGPN---------- 161
+ QGGD T G GG + G F+ E LK G++ +AN G +
Sbjct: 71 IVQGGDPTG-TGRGGADTTFDGKPFDVE-THPRLKFRYRGLVGVANLGRSSKDAENDERG 128
Query: 162 ----TNGSQFFLCTTSI----NKH 177
TNG+QFF+ N +
Sbjct: 129 RSLGTNGNQFFITLARADVLNNAY 152
Score = 77.5 bits (191), Expect = 4e-17
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 18/77 (23%)
Query: 193 MCQGGDFTNHNGTGGK--SIYGNKFEDE-NFILKHTGPGVLSMANSGPN----------- 238
+ QGGD T G GG + G F+ E + LK G++ +AN G +
Sbjct: 71 IVQGGDPTG-TGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGR 129
Query: 239 ---TNGSQFFLCTTKQE 252
TNG+QFF+ + +
Sbjct: 130 SLGTNGNQFFITLARAD 146
Score = 52.1 bits (125), Expect = 4e-08
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+G + ++L P NF LC +G+ Y + FHR++ DF+
Sbjct: 30 LGDLDVELWARECPLACRNFVQLC--LEGY-YVNTIFHRVVKDFI 71
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 77.0 bits (189), Expect = 3e-16
Identities = 33/181 (18%), Positives = 46/181 (25%), Gaps = 56/181 (30%)
Query: 1 MDIKIG---KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFM 57
M +KI E I L P TA NF L E+ F Y G R FV
Sbjct: 175 MKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLV--ERHF-YDGMEIQRS-DGFV--- 227
Query: 58 TKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMC 117
G+ P + +R +
Sbjct: 228 -----------------VQTGD----------------PEGPAEGFIDPSTEKTRTVPLE 254
Query: 118 QGGDFTNHNGTGGKSIYGNKFED-----ENFVLKHTGPGVLSMANSG--PNTNGSQFFLC 170
G YG+ E+ V+ G ++MA ++ SQ F
Sbjct: 255 IM-----VTGEKT-PFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWL 308
Query: 171 T 171
Sbjct: 309 L 309
Score = 59.7 bits (144), Expect = 2e-10
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 27/96 (28%)
Query: 193 MCQGGD-------FTNHNGTGGKSI-------------YGNKFED-----ENFILKHTGP 227
+ Q GD F + + +++ YG+ E+ ++
Sbjct: 227 VVQTGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAF 286
Query: 228 GVLSMANSG--PNTNGSQFFLCTTKQEICVKLLDLL 261
G ++MA ++ SQ F + E+ ++L
Sbjct: 287 GTMAMAREEFENDSGSSQVFWLLKESELTPSNSNIL 322
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 54.8 bits (133), Expect = 2e-09
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMA-NSGPNTNGSQFF 168
M QGG F + +E N LK+ ++MA + P++ +QFF
Sbjct: 53 MIQGGGFE-PGLKQKPT--DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFF 103
Score = 54.4 bits (132), Expect = 2e-09
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMA-NSGPNTNGSQFF 245
M QGG F + +E N LK+ ++MA + P++ +QFF
Sbjct: 53 MIQGGGFE-PGLKQKPT--DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFF 103
Score = 50.2 bits (121), Expect = 6e-08
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
G I ++L P+T ENF +KG Y G+ FHR+I F+
Sbjct: 13 GVIKLELDEAKAPKTVENFLNYV--KKGH-YDGTIFHRVINGFM 53
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 54.1 bits (131), Expect = 3e-09
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE--NFVLKHTGPGVLSMA-NSGPNTNGSQFF 168
M QGG F + ++E N LK+T G L+MA P++ +QFF
Sbjct: 49 MIQGGGFE---PGMKQKATKEPIKNEANNG-LKNT-RGTLAMARTQAPHSATAQFF 99
Score = 54.1 bits (131), Expect = 3e-09
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE--NFILKHTGPGVLSMA-NSGPNTNGSQFF 245
M QGG F + ++E N LK+T G L+MA P++ +QFF
Sbjct: 49 MIQGGGFE---PGMKQKATKEPIKNEANNG-LKNT-RGTLAMARTQAPHSATAQFF 99
Score = 50.2 bits (121), Expect = 7e-08
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
G I I+ D P T +NF C +GF Y + FHR+I F+
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFM 49
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 50.6 bits (122), Expect = 4e-08
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMA-NSGPNTNGSQFF 168
M QGG FT K K E +N L++T G ++MA + ++ SQFF
Sbjct: 54 MIQGGGFTE-QMQQKKPNPPIKNEADNG-LRNT-RGTIAMARTADKDSATSQFF 104
Score = 50.6 bits (122), Expect = 4e-08
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMA-NSGPNTNGSQFF 245
M QGG FT K K E +N L++T G ++MA + ++ SQFF
Sbjct: 54 MIQGGGFTE-QMQQKKPNPPIKNEADNG-LRNT-RGTIAMARTADKDSATSQFF 104
Score = 49.9 bits (120), Expect = 7e-08
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
G I ++L P + +NF GF Y ++FHR+IP F+
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFM 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.16
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 7 KQEVGRITIQLR-Y--DLVPRTAEN 28
KQ + ++ L+ Y D P A
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIK 43
>2aq2_B SEC3, enterotoxin type C-3; T-cell receptor V beta domain,
staphlococcal enterotoxin C3, complex structure, immune
system; 1.80A {Staphylococcus aureus} SCOP: b.40.2.2
d.15.6.1 PDB: 3byy_B 3bvm_A 2aq1_B 3bzd_B 3bvz_A 3bvg_A
3byt_B 2aq3_B 1jwm_D 1i4p_A 1cqv_A 1i4q_A 1i4r_A 1i4x_A
1se2_A 1ste_A 1uns_A 2ipk_D* 1klu_D 1klg_D ...
Length = 237
Score = 29.0 bits (64), Expect = 1.7
Identities = 12/76 (15%), Positives = 26/76 (34%)
Query: 185 IFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQF 244
++ + + C N G +YG + E + + + N F
Sbjct: 84 VYGSNYYVNCYFSSKDNVWWPGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISF 143
Query: 245 FLCTTKQEICVKLLDL 260
+ T K+ + + LD+
Sbjct: 144 EVQTDKKSVTAQELDI 159
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 2.9
Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 36/109 (33%)
Query: 39 FGYQGSS-------------FHRIIPDFVSFMTKR-QSLKSRFSKFRFDFAAGGN----- 79
FG QG++ +H ++ D + F + L F G N
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 80 RTRHSFP-------IP--LPM-------KYIRPCLDCG-SKGTFQSHSS 111
+ P IP P+ Y+ G + G +S+
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Score = 27.7 bits (61), Expect = 6.5
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 21/76 (27%)
Query: 123 TNHN-GTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSINKHYYYY 181
T H G GK I EN+ +M + IN+H Y
Sbjct: 1673 TIHFGGEKGKRIR------ENY---------SAMIFETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 182 YYY-----IFLTRFTQ 192
+ + T+FTQ
Sbjct: 1718 TFRSEKGLLSATQFTQ 1733
>3t7h_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, ligase;
1.60A {Saccharomyces cerevisiae} PDB: 3t7f_A 3t7g_A
3ruj_A
Length = 291
Score = 28.2 bits (62), Expect = 3.4
Identities = 22/178 (12%), Positives = 49/178 (27%), Gaps = 16/178 (8%)
Query: 96 PCLDCGSKGTFQSHSSRINKMCQG-GDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLS 154
+ +F+ H+++ G N N + K D+ L
Sbjct: 59 QVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFN-----VLDEFKNLDKQLFLHQRALECWE 113
Query: 155 MANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNK 214
N F + + + K Y +YY+ + H S+ G
Sbjct: 114 DGIKDINKC-VSFVIISFADLKKYRFYYWLG----VPCFQRPSSTVLH-VRPEPSLKGLF 167
Query: 215 FEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDA-GWETR 271
+ + + + V + N + C ++ + + D + T+
Sbjct: 168 SKCQKWFDVNYSKWVCILDADDEIVN---YDKCIIRKTKVLAIRDTSTMENVPSALTK 222
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA
binding protein; 2.30A {Mycoplasma genitalium} SCOP:
d.287.1.2 d.287.1.2
Length = 406
Score = 27.4 bits (61), Expect = 6.6
Identities = 14/101 (13%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSINKHYYYY 181
F G++ N F++ V+ G + +A+ S L + +
Sbjct: 67 FNGGVKNSGRTDKFNTFKNTISVIVGGSCGYVRLADKNFFCGQSNCTLNLLDPLELDLKF 126
Query: 182 YYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFIL 222
YY ++ ++ GT ++I + ++
Sbjct: 127 AYYALKSQQERI-----EALAFGTTIQNIRISDLKELEIPF 162
>1yf2_A Type I restriction-modification enzyme, S subunit; structura
genomics, PSI, protein structure initiative; 2.40A
{Methanocaldococcus jannaschii} SCOP: d.287.1.2
d.287.1.2
Length = 425
Score = 26.9 bits (60), Expect = 9.9
Identities = 9/66 (13%), Positives = 14/66 (21%), Gaps = 5/66 (7%)
Query: 157 NSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFE 216
N N + YYI + G T K++ +
Sbjct: 105 NKIEVATNQAILGIIPKDNILESEFLYYILAKNKNYYSKLG-----MQTTQKNLNAQIVK 159
Query: 217 DENFIL 222
L
Sbjct: 160 SFKIPL 165
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I
methyltransferase, DNA binding, DNA BIND protein; 1.95A
{Thermoanaerobacter tengcongensis}
Length = 412
Score = 26.6 bits (59), Expect = 10.0
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
Query: 168 FLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFIL 222
S+ + + YY + ++M G F +I ++ L
Sbjct: 316 LRPRDSLERFWLLYYLHYLEPELSKMGAGSTF--------NAITKKDLQNVFIPL 362
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.448
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,397,134
Number of extensions: 245307
Number of successful extensions: 576
Number of sequences better than 10.0: 1
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 117
Length of query: 287
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 194
Effective length of database: 4,105,140
Effective search space: 796397160
Effective search space used: 796397160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)