RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13279
(287 letters)
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6
{Malassezia sympodialis [TaxId: 76777]}
Length = 162
Score = 75.9 bits (186), Expect = 1e-17
Identities = 47/87 (54%), Positives = 53/87 (60%)
Query: 168 FLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGP 227
F + K + Y + M QGGDFT NGTGGKSIYG KF DENF LKH P
Sbjct: 34 FRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKP 93
Query: 228 GVLSMANSGPNTNGSQFFLCTTKQEIC 254
G+LSMAN+GPNTNGSQFF+ T
Sbjct: 94 GLLSMANAGPNTNGSQFFITTVVTSWL 120
Score = 73.6 bits (180), Expect = 1e-16
Identities = 47/85 (55%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 100 CGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSG 159
G G+ H + M QGGDFT NGTGGKSIYG KF DENF LKH PG+LSMAN+G
Sbjct: 44 FGYAGS-HFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAG 102
Query: 160 PNTNGSQFFLCTTSINKHYYYYYYY 184
PNTNGSQFF+ T + + +
Sbjct: 103 PNTNGSQFFITTVVTSWLDGKHVVF 127
Score = 61.3 bits (148), Expect = 3e-12
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
DI +G I +L D+VP+TA NFR LCT EKGFGY GS FHR+IPDF
Sbjct: 6 FDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDF 58
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
falciparum [TaxId: 5833]}
Length = 170
Score = 72.6 bits (177), Expect = 3e-16
Identities = 41/75 (54%), Positives = 49/75 (65%)
Query: 176 KHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANS 235
K+ +Y MCQGGD TN NG+GG+SIYG F DENF +KH PG+LSMAN+
Sbjct: 50 KNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANA 109
Query: 236 GPNTNGSQFFLCTTK 250
GPNTN SQFF+
Sbjct: 110 GPNTNSSQFFITLVP 124
Score = 69.9 bits (170), Expect = 3e-15
Identities = 44/92 (47%), Positives = 52/92 (56%)
Query: 80 RTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFE 139
RT +F + I H MCQGGD TN NG+GG+SIYG F
Sbjct: 31 RTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFT 90
Query: 140 DENFVLKHTGPGVLSMANSGPNTNGSQFFLCT 171
DENF +KH PG+LSMAN+GPNTN SQFF+
Sbjct: 91 DENFNMKHDQPGLLSMANAGPNTNSSQFFITL 122
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 3 [TaxId: 6239]}
Length = 172
Score = 71.4 bits (174), Expect = 8e-16
Identities = 50/80 (62%), Positives = 54/80 (67%)
Query: 175 NKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMAN 234
K ++ M QGGDFT NGTGG+SIYG KF DENF KHTGPGVLSMAN
Sbjct: 50 GKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMAN 109
Query: 235 SGPNTNGSQFFLCTTKQEIC 254
+GPNTNGSQFFLCT K E
Sbjct: 110 AGPNTNGSQFFLCTVKTEWL 129
Score = 71.4 bits (174), Expect = 1e-15
Identities = 63/171 (36%), Positives = 75/171 (43%), Gaps = 55/171 (32%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
DI IG + GRI ++L D+VP+T
Sbjct: 8 FDITIGGKASGRIVMELYDDVVPKT----------------------------AGNFRAL 39
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
+ ++ K G++ P N M QGG
Sbjct: 40 CTGENGIGKSGKPLHFKGSKFHRIIP---------------------------NFMIQGG 72
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCT 171
DFT NGTGG+SIYG KF DENF KHTGPGVLSMAN+GPNTNGSQFFLCT
Sbjct: 73 DFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCT 123
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans
isomerase-like 2, Cyclophilin-60, PPI domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 71.3 bits (174), Expect = 1e-15
Identities = 45/114 (39%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 143 FVLKHTGPGVLSM---ANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDF 199
+V HT G L++ + P T + LC K +YY + + QGGD
Sbjct: 2 YVRLHTNKGDLNLELHCDLTPKTCENFIRLC-----KKHYYDGTIFHRSIRNFVIQGGDP 56
Query: 200 TNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
T GTGG+S +G F+DE L HTG G+LSMANSGPN+N SQFF+
Sbjct: 57 T-GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCA 109
Score = 65.5 bits (159), Expect = 1e-13
Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
+ QGGD T GTGG+S +G F+DE L HTG G+LSMANSGPN+N SQFF+ S
Sbjct: 50 VIQGGDPT-GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSC 108
Query: 175 NKHYYYYYYY 184
+ +
Sbjct: 109 AYLDKKHTIF 118
Score = 50.1 bits (119), Expect = 3e-08
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
G + ++L DL P+T ENF LC K Y G+ FHR I +FV
Sbjct: 10 GDLNLELHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFV 50
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like
1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 70.5 bits (172), Expect = 2e-15
Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 100 CGSKGTFQSHSSRINK--MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMA 156
+ RI K M QGGD T G GG SIYG +FEDE + LK TG G+L+MA
Sbjct: 43 ARRGYYNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMA 101
Query: 157 NSGPNTNGSQFFLCTTSINKHYYYYYYY 184
N+GP+TNGSQFF+ + +
Sbjct: 102 NAGPDTNGSQFFVTLAPTQWLDGKHTIF 129
Score = 68.6 bits (167), Expect = 7e-15
Identities = 38/93 (40%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 179 YYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGP 237
YY M QGGD T G GG SIYG +FEDE + LK TG G+L+MAN+GP
Sbjct: 47 YYNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGP 105
Query: 238 NTNGSQFFLCTTKQEICVKLLDLLASLDAGWET 270
+TNGSQFF+ + + + G
Sbjct: 106 DTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGM 138
Score = 39.7 bits (92), Expect = 9e-05
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
G I ++L + P+T +NF L G + FHRII DF+
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELARRGYYNGTK---FHRIIKDFM 61
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus
fumigatus [TaxId: 5085]}
Length = 171
Score = 68.3 bits (166), Expect = 9e-15
Identities = 43/84 (51%), Positives = 48/84 (57%)
Query: 168 FLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGP 227
F Y M QGGDFT NGTGG+SIYG+KF DENF KH
Sbjct: 39 FRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKK 98
Query: 228 GVLSMANSGPNTNGSQFFLCTTKQ 251
G+LSMAN+GPNTNGSQFF+ T
Sbjct: 99 GILSMANAGPNTNGSQFFITTAVT 122
Score = 64.1 bits (155), Expect = 4e-13
Identities = 40/55 (72%), Positives = 45/55 (81%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLC 170
M QGGDFT NGTGG+SIYG+KF DENF KH G+LSMAN+GPNTNGSQFF+
Sbjct: 64 MIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFIT 118
Score = 47.5 bits (112), Expect = 2e-07
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
+ + +VGRI L VP+TA+NFR LC G GY+ S+FHRIIP+F
Sbjct: 12 PVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNF 63
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 171
Score = 68.3 bits (166), Expect = 1e-14
Identities = 39/174 (22%), Positives = 53/174 (30%), Gaps = 53/174 (30%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKF 70
G I I L + P+T NF L K + Q +S
Sbjct: 13 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGG----------------------- 49
Query: 71 RFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGG 130
P Y G H M QGGD GTG
Sbjct: 50 -----------------PSGPFY---------DGAVF-HRVIQGFMIQGGDP---TGTGR 79
Query: 131 KSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSINKHYYYYYYY 184
++ + L+ P +L+MAN+GP TNGSQFF+ + +
Sbjct: 80 GGPGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIF 133
Score = 48.7 bits (115), Expect = 1e-07
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 171 TTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVL 230
+ +Y M QGGD GTG ++ + L+ P +L
Sbjct: 46 ASGGPSGPFYDGAVFHRVIQGFMIQGGDP---TGTGRGGPGYKFADEFHPELQFDKPYLL 102
Query: 231 SMANSGPNTNGSQFFLCTTKQEIC 254
+MAN+GP TNGSQFF+ K
Sbjct: 103 AMANAGPGTNGSQFFITVGKTPHL 126
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia
malayi) [TaxId: 6279]}
Length = 174
Score = 66.4 bits (161), Expect = 5e-14
Identities = 48/117 (41%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 160 PNTNGSQFFLCTTSIN------KHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGN 213
P T + LCT K +Y M QGGDFT +GTGG+SIYG
Sbjct: 30 PRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGG 89
Query: 214 KFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET 270
F+DE F++KH P V+SMAN GPNTNGSQFF+ TT + + + +G E
Sbjct: 90 MFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEV 146
Score = 65.2 bits (158), Expect = 2e-13
Identities = 42/74 (56%), Positives = 49/74 (66%)
Query: 108 SHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQF 167
H N M QGGDFT +GTGG+SIYG F+DE FV+KH P V+SMAN GPNTNGSQF
Sbjct: 61 FHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQF 120
Query: 168 FLCTTSINKHYYYY 181
F+ TT +
Sbjct: 121 FITTTPAPHLNNIH 134
Score = 62.1 bits (150), Expect = 2e-12
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
+D+ I GRI ++L D+ PRT NF LCT G G Y+GS+FHR+I +
Sbjct: 8 LDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKN 67
Query: 53 FV 54
F+
Sbjct: 68 FM 69
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
musculus), variant C [TaxId: 10090]}
Length = 182
Score = 66.4 bits (161), Expect = 7e-14
Identities = 43/87 (49%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 170 CTTSINKHYYYYYYYIFLTRFT--QMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGP 227
Y Y R M QGGDFT +GTGG SIYG F DENF LKH G
Sbjct: 40 FVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGI 99
Query: 228 GVLSMANSGPNTNGSQFFLCTTKQEIC 254
G +SMAN+GP+TNGSQFF+ TK
Sbjct: 100 GWVSMANAGPDTNGSQFFITLTKPTWL 126
Score = 64.5 bits (156), Expect = 3e-13
Identities = 39/71 (54%), Positives = 47/71 (66%)
Query: 114 NKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTS 173
+ M QGGDFT +GTGG SIYG F DENF LKH G G +SMAN+GP+TNGSQFF+ T
Sbjct: 63 DFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTK 122
Query: 174 INKHYYYYYYY 184
+ +
Sbjct: 123 PTWLDGKHVVF 133
Score = 57.5 bits (138), Expect = 1e-10
Identities = 30/53 (56%), Positives = 40/53 (75%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
D++IG ++VGRI I L ++VP+T ENF L T EKG+GY+GS FHR+I DF
Sbjct: 12 FDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDF 64
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 195
Score = 66.8 bits (162), Expect = 7e-14
Identities = 61/171 (35%), Positives = 76/171 (44%), Gaps = 54/171 (31%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
D+ IG + VGRI ++L D+VP+TAEN F + T
Sbjct: 19 FDVDIGGERVGRIVLELFADIVPKTAEN------------------------FRALCTGE 54
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
+ + K +R F M QGG
Sbjct: 55 KGIGPTTGKPLHFKGCPFHRIIKKF------------------------------MIQGG 84
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCT 171
DF+N NGTGG+SIYG KFEDENF KH G+LSMAN+G NTNGSQFF+ T
Sbjct: 85 DFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 135
Score = 56.4 bits (135), Expect = 3e-10
Identities = 42/78 (53%), Positives = 49/78 (62%)
Query: 175 NKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMAN 234
K ++ M QGGDF+N NGTGG+SIYG KFEDENF KH G+LSMAN
Sbjct: 62 GKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMAN 121
Query: 235 SGPNTNGSQFFLCTTKQE 252
+G NTNGSQFF+ T
Sbjct: 122 AGSNTNGSQFFITTVPTP 139
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans
isomerase, cyclophilin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 63.3 bits (153), Expect = 6e-13
Identities = 56/95 (58%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Query: 160 PNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN 219
P T + LCT K + Y + MCQ GDFTNHNGTGGKSIYG++F DEN
Sbjct: 29 PKTAENFRALCTG--EKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDEN 86
Query: 220 FILKHTGPGVLSMANSGPNTNGSQFFLCTTKQEIC 254
F LKH GPGVLSMAN+GPNTNGSQFF+CT K +
Sbjct: 87 FTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 121
Score = 59.5 bits (143), Expect = 2e-11
Identities = 30/54 (55%), Positives = 44/54 (81%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+D+ + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP F+
Sbjct: 7 LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFM 60
Score = 59.1 bits (142), Expect = 2e-11
Identities = 49/76 (64%), Positives = 57/76 (75%)
Query: 109 HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFF 168
H + MCQ GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF
Sbjct: 53 HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 112
Query: 169 LCTTSINKHYYYYYYY 184
+CT + + +
Sbjct: 113 ICTIKTDWLDGKHVVF 128
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 5 [TaxId: 6239]}
Length = 182
Score = 63.7 bits (154), Expect = 6e-13
Identities = 46/91 (50%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 160 PNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN 219
P T + L + Y ++ + F M QGGDFT +GTGG+SIYG KF DEN
Sbjct: 33 PKTATNFIELAKKPKGEGYPGSKFHRVIADF--MIQGGDFTRGDGTGGRSIYGEKFADEN 90
Query: 220 FILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
F LKH G G LSMAN+G +TNGSQFF+ T K
Sbjct: 91 FKLKHYGAGWLSMANAGADTNGSQFFITTVK 121
Score = 60.6 bits (146), Expect = 8e-12
Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 97 CLDCGSKGTFQSHSSRI--NKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLS 154
+G S R+ + M QGGDFT +GTGG+SIYG KF DENF LKH G G LS
Sbjct: 43 AKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLS 102
Query: 155 MANSGPNTNGSQFFLCTTSINKHYYYYYYY 184
MAN+G +TNGSQFF+ T + +
Sbjct: 103 MANAGADTNGSQFFITTVKTPWLDGRHVVF 132
Score = 59.8 bits (144), Expect = 1e-11
Identities = 27/53 (50%), Positives = 33/53 (62%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
D++IG + +GRI I L VP+TA NF L KG GY GS FHR+I DF
Sbjct: 11 FDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADF 63
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 159
Score = 62.1 bits (150), Expect = 1e-12
Identities = 38/77 (49%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 176 KHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMAN 234
YY M Q GD G GG SI+G KFEDE + LKH GV+SMAN
Sbjct: 33 ASNYYNGCIFHRNIKGFMVQTGDP-TGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMAN 91
Query: 235 SGPNTNGSQFFLCTTKQ 251
+GPNTNGSQFF+ KQ
Sbjct: 92 NGPNTNGSQFFITYGKQ 108
Score = 61.4 bits (148), Expect = 2e-12
Identities = 36/80 (45%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 106 FQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNG 164
H + M Q GD G GG SI+G KFEDE + LKH GV+SMAN+GPNTNG
Sbjct: 40 CIFHRNIKGFMVQTGDP-TGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNG 98
Query: 165 SQFFLCTTSINKHYYYYYYY 184
SQFF+ Y +
Sbjct: 99 SQFFITYGKQPHLDMKYTVF 118
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi
[TaxId: 5693]}
Length = 166
Score = 60.2 bits (145), Expect = 8e-12
Identities = 43/92 (46%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 160 PNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN 219
P T + F S + Y M QGGDFTN +GTGGKSIYG +F+DEN
Sbjct: 32 PKT--VENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDEN 89
Query: 220 FILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
+KH G +SMAN+GPN+NGSQFF+ T
Sbjct: 90 LKIKHF-VGAVSMANAGPNSNGSQFFVTTAPT 120
Score = 57.9 bits (139), Expect = 4e-11
Identities = 39/71 (54%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 114 NKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTS 173
N M QGGDFTN +GTGGKSIYG +F+DEN +KH G +SMAN+GPN+NGSQFF+ T
Sbjct: 61 NFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAP 119
Query: 174 INKHYYYYYYY 184
+ +
Sbjct: 120 TPWLDGRHVVF 130
Score = 55.2 bits (132), Expect = 4e-10
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
DI IG + VGR+ I L + VP+T ENF+ L + E GFGY+GS FHR+I +F
Sbjct: 10 FDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNF 62
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
cis-trans isomerase, cyclophilin F {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 59.5 bits (143), Expect = 1e-11
Identities = 47/128 (36%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
MDIKIG + GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP F+
Sbjct: 6 MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDF 65
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
+ K + + +K+ P L + ++ S+ C
Sbjct: 66 TNHNGTGGKSIYG--------KKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKT 117
Query: 121 DFTNHNGT 128
D+ +
Sbjct: 118 DWLDGKHV 125
Score = 55.7 bits (133), Expect = 3e-10
Identities = 57/95 (60%), Positives = 65/95 (68%), Gaps = 2/95 (2%)
Query: 160 PNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN 219
P T ++ F C + K + + MCQGGDFTNHNGTGGKSIYG KF+DEN
Sbjct: 28 PMT--AENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDEN 85
Query: 220 FILKHTGPGVLSMANSGPNTNGSQFFLCTTKQEIC 254
FILKHTGPG+LSMANSGPNTNGSQFFL K +
Sbjct: 86 FILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 120
Score = 49.9 bits (118), Expect = 4e-08
Identities = 50/55 (90%), Positives = 53/55 (96%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLC 170
MCQGGDFTNHNGTGGKSIYG KF+DENF+LKHTGPG+LSMANSGPNTNGSQFFL
Sbjct: 59 MCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 113
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693
{Plasmodium yoelii [TaxId: 5861]}
Length = 169
Score = 59.5 bits (143), Expect = 1e-11
Identities = 43/135 (31%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 140 DENFVLKHTGPGVLSM---ANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQG 196
+ ++ +T G + P T + + LC +Y IF
Sbjct: 15 ERGYITIYTNLGDFEVELYWYHSPKTCLNFYTLC------EMGFYDNTIFHRVIPNFVIQ 68
Query: 197 GDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQEICV 255
G G GGKSIYG FEDE N LKHTG G+LSM+N+GPNTN SQFF+
Sbjct: 69 GGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLD 128
Query: 256 KLLDLLASLDAGWET 270
+ A +
Sbjct: 129 GKHTIFARVSKNMTC 143
Score = 56.8 bits (136), Expect = 1e-10
Identities = 34/86 (39%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 100 CGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANS 158
I G G GGKSIYG FEDE N LKHTG G+LSM+N+
Sbjct: 49 EMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNN 108
Query: 159 GPNTNGSQFFLCTTSINKHYYYYYYY 184
GPNTN SQFF+ + + +
Sbjct: 109 GPNTNSSQFFITLAPLPHLDGKHTIF 134
Score = 31.4 bits (70), Expect = 0.076
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLC 33
+G ++L + P+T NF LC
Sbjct: 25 LGDFEVELYWYHSPKTCLNFYTLC 48
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
[TaxId: 9606]}
Length = 173
Score = 58.7 bits (141), Expect = 3e-11
Identities = 38/80 (47%), Positives = 46/80 (57%)
Query: 175 NKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMAN 234
Y M QGGDF N +GTG SIY F DENF L+H+ PG+LSMAN
Sbjct: 51 GVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMAN 110
Query: 235 SGPNTNGSQFFLCTTKQEIC 254
SGP+TNG QFF+ +K +
Sbjct: 111 SGPSTNGCQFFITCSKCDWL 130
Score = 56.4 bits (135), Expect = 2e-10
Identities = 56/176 (31%), Positives = 71/176 (40%), Gaps = 67/176 (38%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-----KGFGYQGSSFHRIIPDFVS 55
D+ IG QEVGR+ I+L D+VP+TAENFR CT E GY+GS+FHR+I DF
Sbjct: 11 FDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDF-- 68
Query: 56 FMTKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINK 115
G F +
Sbjct: 69 --------------------------------------------MIQGGDFVNGDGTGVA 84
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCT 171
G F + NF L+H+ PG+LSMANSGP+TNG QFF+
Sbjct: 85 SIYRGPFADE----------------NFKLRHSAPGLLSMANSGPSTNGCQFFITC 124
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
yoelii [TaxId: 5861]}
Length = 186
Score = 48.7 bits (115), Expect = 1e-07
Identities = 48/186 (25%), Positives = 69/186 (37%), Gaps = 59/186 (31%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
MDI +G +G+ +L ++VP+T+ENFR CT E + I
Sbjct: 21 MDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTI---------- 70
Query: 61 QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
+ I+ + G G F +H+ + G
Sbjct: 71 -----------------------------FHRVIKEFMIQG--GDFINHNGSGSLSIYGE 99
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSINKHYYY 180
F +DENF +KH G+LSMANSGPNTNG QFF+ T +
Sbjct: 100 KF----------------DDENFDIKHDKEGLLSMANSGPNTNGCQFFITTK--KCEWLD 141
Query: 181 YYYYIF 186
+F
Sbjct: 142 GKNVVF 147
Score = 48.7 bits (115), Expect = 1e-07
Identities = 42/74 (56%), Positives = 47/74 (63%)
Query: 175 NKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMAN 234
N Y M QGGDF NHNG+G SIYG KF+DENF +KH G+LSMAN
Sbjct: 61 NLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMAN 120
Query: 235 SGPNTNGSQFFLCT 248
SGPNTNG QFF+ T
Sbjct: 121 SGPNTNGCQFFITT 134
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w
{Plasmodium falciparum [TaxId: 5833]}
Length = 155
Score = 46.9 bits (110), Expect = 4e-07
Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 177 HYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANS 235
YY IF + +GTGG+SI+GN+FEDE F L H+ P ++SMAN
Sbjct: 34 INGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANC 93
Query: 236 GPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET 270
GPNTNGSQFF+ T + + G +
Sbjct: 94 GPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKI 128
Score = 45.7 bits (107), Expect = 8e-07
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 88 PLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENF-VLK 146
++ G H + M Q GD + GTGG+SI+GN+FEDE F L
Sbjct: 23 KKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGD-GTGGESIWGNEFEDEFFDHLN 81
Query: 147 HTGPGVLSMANSGPNTNGSQFFLCTTSINKHYYYYYYY 184
H+ P ++SMAN GPNTNGSQFF+ T + + +
Sbjct: 82 HSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVF 119
Score = 38.8 bits (89), Expect = 2e-04
Identities = 14/109 (12%), Positives = 27/109 (24%), Gaps = 1/109 (0%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSK 69
+G I I L Y +T +NF + + + +
Sbjct: 10 MGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWG 69
Query: 70 FRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQ 118
F+ + HS P + M P + ++
Sbjct: 70 NEFEDEF-FDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHT 117
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD
repeat-containing protein 1, PPWD1, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 43.8 bits (102), Expect = 4e-06
Identities = 28/96 (29%), Positives = 40/96 (41%)
Query: 175 NKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMAN 234
+++ YY + M Q GD T G G ++ + L+H P LSMAN
Sbjct: 41 SRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMAN 100
Query: 235 SGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET 270
+G NTNGSQFF+ + + G E
Sbjct: 101 AGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEV 136
Score = 42.6 bits (99), Expect = 1e-05
Identities = 27/97 (27%), Positives = 37/97 (38%)
Query: 88 PLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKH 147
P ++ G H M Q GD T G G ++ + L+H
Sbjct: 31 PKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRH 90
Query: 148 TGPGVLSMANSGPNTNGSQFFLCTTSINKHYYYYYYY 184
P LSMAN+G NTNGSQFF+ + +
Sbjct: 91 DRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVF 127
Score = 41.5 bits (96), Expect = 3e-05
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMT 58
D I +G I +L P+T ENF C H + Y G +FHRII F+
Sbjct: 9 SDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFMIQTG 63
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 43.0 bits (100), Expect = 8e-06
Identities = 12/81 (14%), Positives = 24/81 (29%)
Query: 100 CGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSG 159
C + R+ G K+ + N LK+T +
Sbjct: 31 CREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQA 90
Query: 160 PNTNGSQFFLCTTSINKHYYY 180
P++ +QFF+ + +
Sbjct: 91 PHSATAQFFINVVDNDFLNFS 111
Score = 42.6 bits (99), Expect = 1e-05
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMT 58
G I I+ D P T +NF C + Y + FHR+I F+
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC---REGFYNNTIFHRVINGFMIQGG 53
Score = 39.9 bits (92), Expect = 8e-05
Identities = 12/74 (16%), Positives = 22/74 (29%)
Query: 181 YYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN 240
+Y R G K+ + N LK+T + P++
Sbjct: 35 FYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSA 94
Query: 241 GSQFFLCTTKQEIC 254
+QFF+ +
Sbjct: 95 TAQFFINVVDNDFL 108
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 166
Score = 39.5 bits (91), Expect = 1e-04
Identities = 11/73 (15%), Positives = 19/73 (26%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSK 69
G I ++L P + +NF T++ K
Sbjct: 13 AGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPP 72
Query: 70 FRFDFAAGGNRTR 82
+ + G TR
Sbjct: 73 IKNEADNGLRNTR 85
Score = 31.1 bits (69), Expect = 0.098
Identities = 9/88 (10%), Positives = 25/88 (28%), Gaps = 7/88 (7%)
Query: 168 FLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTG 226
F+ + + ++ + Q + ++E L++T
Sbjct: 32 FVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPP------IKNEADNGLRNTR 85
Query: 227 PGVLSMANSGPNTNGSQFFLCTTKQEIC 254
+ + ++ SQFF+
Sbjct: 86 GTIAMARTADKDSATSQFFINVADNAFL 113
Score = 29.9 bits (66), Expect = 0.23
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 101 GSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENF-VLKHTGPGVLSMANSG 159
G H M QGG FT + ++E L++T + +
Sbjct: 39 GFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPP---IKNEADNGLRNTRGTIAMARTAD 95
Query: 160 PNTNGSQFFLCTTSINKHYYYYYYY 184
++ SQFF+ + +
Sbjct: 96 KDSATSQFFINVADNAFLDHGQRDF 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.448
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,128,122
Number of extensions: 52046
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 67
Length of query: 287
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,254,276
Effective search space: 254618028
Effective search space used: 254618028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.4 bits)