BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13283
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GWN|A Chain A, Crystal Structure Of Human Mature Meprin Beta
Length = 553
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 13 VRLDIKFLVSAYWNDFGKASPKDVSD-YGVPYDFQSVMHYPAKAFSKNGKDTIVAK-KDP 70
VR+ ++S ++F S D+SD VPYD+ SVMHY AF + TIV + D
Sbjct: 112 VRIMWDRILSGREHNFNTYS-DDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDF 170
Query: 71 KAILGQRRGATEGDLEKVRQMY 92
+ ++GQR ++ DL K+ Q+Y
Sbjct: 171 EDVIGQRMDFSDSDLLKLNQLY 192
>pdb|4GWM|A Chain A, Crystal Structure Of Human Promeprin Beta
pdb|4GWM|B Chain B, Crystal Structure Of Human Promeprin Beta
Length = 592
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 13 VRLDIKFLVSAYWNDFGKASPKDVSD-YGVPYDFQSVMHYPAKAFSKNGKDTIVAK-KDP 70
VR+ ++S ++F S D+SD VPYD+ SVMHY AF + TIV + D
Sbjct: 151 VRIMWDRILSGREHNFNTYS-DDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDF 209
Query: 71 KAILGQRRGATEGDLEKVRQMY 92
+ ++GQR ++ DL K+ Q+Y
Sbjct: 210 EDVIGQRMDFSDSDLLKLNQLY 231
>pdb|3EDG|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain
Length = 202
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 27 DFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKN-GKDTIVAKKDPKAI---LGQRRGATE 82
+F K P++V G YDF S+MHY FS+ DTIV K + + +GQR ++
Sbjct: 129 NFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSK 188
Query: 83 GDLEKVRQMY 92
GD+ + R++Y
Sbjct: 189 GDIAQARKLY 198
>pdb|3EDH|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain In Complex With Partially Bound Dmso
Length = 201
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 27 DFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKN-GKDTIVAKKDPKAI---LGQRRGATE 82
+F K P++V G YDF S+MHY FS+ DTIV K + + +GQR ++
Sbjct: 128 NFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSK 187
Query: 83 GDLEKVRQMY 92
GD+ + R++Y
Sbjct: 188 GDIAQARKLY 197
>pdb|3EDI|A Chain A, Crystal Structure Of Tolloid-Like Protease 1 (Tll-1)
Protease Domain
Length = 201
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 27 DFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNG-KDTIVAKKDPKAI---LGQRRGATE 82
+F K P +V+ G YDF S+MHY FS+ DTI+ +D I +GQR ++
Sbjct: 128 NFLKMEPGEVNSLGERYDFDSIMHYARNTFSRGMFLDTILPSRDDNGIRPAIGQRTRLSK 187
Query: 83 GDLEKVRQMY 92
GD+ + R++Y
Sbjct: 188 GDIAQARKLY 197
>pdb|3LQB|A Chain A, Crystal Structure Of The Hatching Enzyme Zhe1 From The
Zebrafish Danio Rerio
Length = 199
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 41 VPYDFQSVMHYPAKAFS-KNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMY 92
PYD+ S+MHY AF+ + G +TI D +GQR+G ++ D+ ++ ++Y
Sbjct: 145 TPYDYGSLMHYGKTAFAIQPGLETITPIPDENVQIGQRQGLSKIDILRINKLY 197
>pdb|2YXG|A Chain A, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|B Chain B, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|C Chain C, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|D Chain D, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
Length = 289
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 12/101 (11%)
Query: 6 NLAWRTAVRLD---IKFLVSAYWN--DFGKASPKDVSDYGVPYDFQSV-------MHYPA 53
N+ RTAV L+ +K L Y N +A+P + +D + + P
Sbjct: 133 NVPSRTAVNLEPKTVKLLAEEYSNISAVKEANPNLSQVSELIHDAKITVLSGNDELTLPI 192
Query: 54 KAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYCK 94
A G ++VA PK + A EGD EK R+++ K
Sbjct: 193 IALGGKGVISVVANIVPKEFVEMVNYALEGDFEKAREIHYK 233
>pdb|2QJK|C Chain C, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|F Chain F, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|I Chain I, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|L Chain L, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|O Chain O, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|R Chain R, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
Length = 179
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 71 KAILGQRRGATEGDLEKVRQMYC-------KKNANTDDGLDEVEDNRLLDE 114
K I +RR TE D+E R + +NAN D G + + NR LDE
Sbjct: 62 KPIFIRRR--TEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDE 110
>pdb|2QJP|C Chain C, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|F Chain F, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|I Chain I, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|L Chain L, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
Length = 179
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 71 KAILGQRRGATEGDLEKVRQMYC-------KKNANTDDGLDEVEDNRLLDE 114
K I +RR TE D+E R + +NAN D G + + NR LDE
Sbjct: 62 KPIFIRRR--TEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDE 110
>pdb|2FYN|C Chain C, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|F Chain F, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|I Chain I, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|L Chain L, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|O Chain O, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|R Chain R, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2QJY|C Chain C, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|F Chain F, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|I Chain I, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|L Chain L, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|O Chain O, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|R Chain R, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
Length = 187
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 71 KAILGQRRGATEGDLEKVRQMYC-------KKNANTDDGLDEVEDNRLLDE 114
K I +RR TE D+E R + +NAN D G + + NR LDE
Sbjct: 70 KPIFIRRR--TEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDE 118
>pdb|3R2W|A Chain A, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|B Chain B, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|C Chain C, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|D Chain D, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R3I|A Chain A, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|B Chain B, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|C Chain C, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|D Chain D, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
Length = 528
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 40 GVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYCKKNANT 99
G+P + SV++ G T + K PK+++G R T DL + + K NT
Sbjct: 116 GLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNT 175
Query: 100 D 100
D
Sbjct: 176 D 176
>pdb|2NWF|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 71 KAILGQRRGATEGDLEKVRQMYC-------KKNANTDDGLDEVEDNRLLDE 114
K I +RR TE D+E R + +NAN D G + + NR LDE
Sbjct: 24 KPIFIRRR--TEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDE 72
>pdb|2NUM|A Chain A, Soluble Domain Of Rieske Iron-Sulfur Protein
Length = 141
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 71 KAILGQRRGATEGDLEKVRQMYC-------KKNANTDDGLDEVEDNRLLDE 114
K I +RR TE D+E R + +NAN D G + + NR LDE
Sbjct: 24 KPIFIRRR--TEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDE 72
>pdb|2NUK|A Chain A, Soluble Domain Of The Rieske Iron-Sulfur Protein From
Rhodobacter Sphaeroides
Length = 141
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 71 KAILGQRRGATEGDLEKVRQMYC-------KKNANTDDGLDEVEDNRLLDE 114
K I +RR TE D+E R + +NAN D G + + NR LDE
Sbjct: 24 KPIFIRRR--TEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDE 72
>pdb|2NVG|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 71 KAILGQRRGATEGDLEKVRQMYC-------KKNANTDDGLDEVEDNRLLDE 114
K I +RR TE D+E R + +NAN D G + + NR LDE
Sbjct: 24 KPIFIRRR--TEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDE 72
>pdb|2NVE|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 71 KAILGQRRGATEGDLEKVRQMYC-------KKNANTDDGLDEVEDNRLLDE 114
K I +RR TE D+E R + +NAN D G + + NR LDE
Sbjct: 24 KPIFIRRR--TEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDE 72
>pdb|2NVF|A Chain A, Soluble Domain Of Rieske Iron-Sulfur Protein
Length = 141
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 71 KAILGQRRGATEGDLEKVRQMYC-------KKNANTDDGLDEVEDNRLLDE 114
K I +RR TE D+E R + +NAN D G + + NR LDE
Sbjct: 24 KPIFIRRR--TEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDE 72
>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|2 Chain 2, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 261
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 2 HLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHY 51
H K++L A++L + + WND G S DV + D + + +Y
Sbjct: 170 HWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY 219
>pdb|2JCB|A Chain A, The Crystal Structure Of 5-Formyl-Tetrahydrofolate
Cycloligase From Bacillus Anthracis (Ba4489)
pdb|2JCB|B Chain B, The Crystal Structure Of 5-Formyl-Tetrahydrofolate
Cycloligase From Bacillus Anthracis (Ba4489)
Length = 200
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 40 GVPYDFQSVMHYPAKAFSKNGKDTIVAK 67
+ Y FQ V H P + F KN + I K
Sbjct: 164 SLAYSFQMVEHIPVEPFDKNVEKIITEK 191
>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|H Chain H, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|V Chain V, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|H Chain H, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|V Chain V, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3UN4|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4G4S|I Chain I, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 232
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 2 HLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHY 51
H K++L A++L + + WND G S DV + D + + +Y
Sbjct: 141 HWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY 190
>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|H Chain H, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|V Chain V, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|H Chain H, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|V Chain V, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|H Chain H, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|O Chain O, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|H Chain H, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|V Chain V, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|H Chain H, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|V Chain V, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|H Chain H, Proteasome Inhibition By Fellutamide B
pdb|3D29|V Chain V, Proteasome Inhibition By Fellutamide B
pdb|3E47|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|H Chain H, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|V Chain V, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|I Chain I, Proteasome Activator Complex
pdb|1VSY|W Chain W, Proteasome Activator Complex
pdb|3L5Q|M Chain M, Proteasome Activator Complex
pdb|3L5Q|Y Chain Y, Proteasome Activator Complex
pdb|3MG4|H Chain H, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|V Chain V, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|H Chain H, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|V Chain V, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|H Chain H, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|V Chain V, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|H Chain H, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|V Chain V, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|H Chain H, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|V Chain V, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|H Chain H, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|V Chain V, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|H Chain H, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|V Chain V, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|H Chain H, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|V Chain V, 20s Yeast Proteasome In Complex With Glidobactin
Length = 222
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 2 HLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHY 51
H K++L A++L + + WND G S DV + D + + +Y
Sbjct: 141 HWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY 190
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 7 LAWRTAVRLDIKFLVSAY-WNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIV 65
WR + + + Y W+ +G+ D+ D+ +P+ +++ + S + T
Sbjct: 222 CGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXA 281
Query: 66 AKKDPK 71
D K
Sbjct: 282 LTSDGK 287
>pdb|2F1R|A Chain A, Crystal Structure Of Molybdopterin-guanine Biosynthesis
Protein B (mobb)
pdb|2F1R|B Chain B, Crystal Structure Of Molybdopterin-guanine Biosynthesis
Protein B (mobb)
Length = 171
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 53 AKAFSKNGKDTIVAKKDPKAILGQRRG 79
+ FSK GKD IV K P+ + R+G
Sbjct: 101 TEGFSKAGKDRIVVVKKPEEVEHFRQG 127
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 80 ATEGDLEKVRQMYCKKNANTDDG 102
A E L+K+ ++ CK+ A+TD G
Sbjct: 260 AVELKLKKIAELLCKRGASTDCG 282
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 80 ATEGDLEKVRQMYCKKNANTDDG 102
A E L+K+ ++ CK+ A+TD G
Sbjct: 280 AVELKLKKIAELLCKRGASTDCG 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,951,086
Number of Sequences: 62578
Number of extensions: 159393
Number of successful extensions: 371
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 38
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)