Query psy13283
Match_columns 124
No_of_seqs 168 out of 969
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 15:30:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04281 ZnMc_BMP1_TLD Zinc-dep 100.0 1.9E-40 4.2E-45 250.6 7.9 95 1-95 102-200 (200)
2 cd04283 ZnMc_hatching_enzyme Z 100.0 3.9E-40 8.5E-45 245.8 7.5 91 1-94 92-182 (182)
3 cd04282 ZnMc_meprin Zinc-depen 100.0 3.5E-39 7.6E-44 248.1 8.1 94 1-94 135-230 (230)
4 KOG3714|consensus 100.0 3E-38 6.6E-43 259.8 7.3 99 1-99 174-274 (411)
5 cd04280 ZnMc_astacin_like Zinc 100.0 5.1E-37 1.1E-41 228.0 7.2 92 1-92 89-180 (180)
6 PF01400 Astacin: Astacin (Pep 100.0 1.1E-36 2.4E-41 228.1 6.8 96 1-96 94-191 (191)
7 cd04327 ZnMc_MMP_like_3 Zinc-d 99.9 2.4E-23 5.3E-28 156.3 4.0 76 1-93 107-198 (198)
8 cd04268 ZnMc_MMP_like Zinc-dep 99.3 1.8E-12 3.9E-17 93.3 4.7 57 1-92 109-165 (165)
9 cd00203 ZnMc Zinc-dependent me 98.6 6E-08 1.3E-12 69.6 4.6 57 1-92 111-167 (167)
10 cd04278 ZnMc_MMP Zinc-dependen 71.4 6.8 0.00015 27.8 3.8 17 77-93 141-157 (157)
11 PF12388 Peptidase_M57: Dual-a 60.7 9.1 0.0002 29.5 2.8 17 76-92 195-211 (211)
12 cd04277 ZnMc_serralysin_like Z 51.1 16 0.00036 26.5 2.8 19 75-93 168-186 (186)
13 cd04276 ZnMc_MMP_like_2 Zinc-d 41.7 37 0.00081 25.6 3.5 40 45-93 157-196 (197)
14 PF00413 Peptidase_M10: Matrix 28.3 39 0.00085 23.2 1.6 15 79-93 140-154 (154)
15 PF12999 PRKCSH-like: Glucosid 26.7 31 0.00066 25.9 0.8 30 83-112 48-78 (176)
16 KOG2397|consensus 24.3 47 0.001 28.6 1.6 28 85-112 56-84 (480)
17 smart00235 ZnMc Zinc-dependent 21.2 49 0.0011 22.6 1.0 18 27-47 123-140 (140)
No 1
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=100.00 E-value=1.9e-40 Score=250.62 Aligned_cols=95 Identities=32% Similarity=0.522 Sum_probs=89.8
Q ss_pred CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCCC-CCeEEecCCC---CccCCc
Q psy13283 1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNG-KDTIVAKKDP---KAILGQ 76 (124)
Q Consensus 1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~g-~~Ti~~~~~~---~~~iGq 76 (124)
+|||+|||||+||.|+|+||.++.++||+|++...+.++|+||||+|||||++++||+++ .|||+|+.+. ..+|||
T Consensus 102 ~HEhsRpDRD~yV~I~~~nI~~~~~~nF~k~~~~~~~~~g~pYDy~SiMHY~~~aFs~~~~~~Ti~p~~~~~~~~~~iGq 181 (200)
T cd04281 102 WHEHTRPDRDDHVTIIRENIQPGQEYNFLKMEPEEVDSLGEPYDFDSIMHYARNTFSRGMFLDTILPKRDPNGVRPEIGQ 181 (200)
T ss_pred cchhccccccceEEEeecccCcchhhhhhhcCccccccCCCccCCCccccCCCCccccCCCCCceEECCCcccccccccc
Confidence 799999999999999999999999999999998888899999999999999999999987 8999997654 367999
Q ss_pred CCCCCHHHHHHHHhhCCCC
Q psy13283 77 RRGATEGDLEKVRQMYCKK 95 (124)
Q Consensus 77 r~~lS~~Di~~IN~lY~C~ 95 (124)
|.+||+.|+++||+||.|+
T Consensus 182 r~~lS~~Di~~iN~~Y~C~ 200 (200)
T cd04281 182 RTRLSEGDIIQANKLYKCP 200 (200)
T ss_pred cCCCCHHHHHHHHHhcCCC
Confidence 9999999999999999996
No 2
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=100.00 E-value=3.9e-40 Score=245.79 Aligned_cols=91 Identities=34% Similarity=0.581 Sum_probs=86.0
Q ss_pred CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCC
Q psy13283 1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGA 80 (124)
Q Consensus 1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~l 80 (124)
+|||+|||||+||.|+|+||.|+.+.||+|.+. .++|+||||+|||||++++||++|+|||+|+.++..+||||.+|
T Consensus 92 ~HEhsRpDRD~yV~I~~~nI~~~~~~nF~~~~~---~~~~~pYDy~SiMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~l 168 (182)
T cd04283 92 YHEQTRSDRDKYVRINWENIIPDQLYNFDKQDT---NNLGTPYDYSSVMHYGRYAFSINGKPTIVPIPDPNVPIGQRQGM 168 (182)
T ss_pred cccccccccCceEEEehhhcCchHHhhhhhccc---cccCCcccceeeeccCCcccccCCCCeEEECCcccccccCCCCC
Confidence 799999999999999999999999999999864 46789999999999999999999999999976666789999999
Q ss_pred CHHHHHHHHhhCCC
Q psy13283 81 TEGDLEKVRQMYCK 94 (124)
Q Consensus 81 S~~Di~~IN~lY~C 94 (124)
|+.|+++||+||+|
T Consensus 169 S~~Di~~iN~~Y~C 182 (182)
T cd04283 169 SNLDILRINKLYNC 182 (182)
T ss_pred CHHHHHHHHHhcCC
Confidence 99999999999999
No 3
>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.
Probab=100.00 E-value=3.5e-39 Score=248.07 Aligned_cols=94 Identities=30% Similarity=0.439 Sum_probs=88.8
Q ss_pred CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCC-CCCeEEecCCC-CccCCcCC
Q psy13283 1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKN-GKDTIVAKKDP-KAILGQRR 78 (124)
Q Consensus 1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~-g~~Ti~~~~~~-~~~iGqr~ 78 (124)
||||+|||||+||+|+|+||.++..+||+|++...+.++|+||||+|||||++++||++ ++|||+|+... ..+||||.
T Consensus 135 ~HEqsRpDRD~yV~I~~~nI~~~~~~nF~k~~~~~~~~~g~pYDy~SIMHY~~~aFs~~~~~pTi~~~~~~~~~~iGqr~ 214 (230)
T cd04282 135 YHEQSRSDRDDYVKIWWDQILSGREHNFNKYDDSFSTDLNTPYDYESVMHYSPFSFNKGASEPTITTKIPEFNDIIGQRL 214 (230)
T ss_pred cccccccccccceEEeecccCchHHHHhhhcCccccccCCCCCCcccccccCCCccccCCCCceeeecCCcccccccccC
Confidence 79999999999999999999999999999999888889999999999999999999999 69999996543 57899999
Q ss_pred CCCHHHHHHHHhhCCC
Q psy13283 79 GATEGDLEKVRQMYCK 94 (124)
Q Consensus 79 ~lS~~Di~~IN~lY~C 94 (124)
+||+.|+++||+||+|
T Consensus 215 ~lS~~Di~~iN~~Y~C 230 (230)
T cd04282 215 DFSDIDLERLNRMYNC 230 (230)
T ss_pred CCCHHHHHHHHHhcCC
Confidence 9999999999999999
No 4
>KOG3714|consensus
Probab=100.00 E-value=3e-38 Score=259.81 Aligned_cols=99 Identities=35% Similarity=0.560 Sum_probs=92.8
Q ss_pred CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCCC-CCeEEecCCC-CccCCcCC
Q psy13283 1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNG-KDTIVAKKDP-KAILGQRR 78 (124)
Q Consensus 1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~g-~~Ti~~~~~~-~~~iGqr~ 78 (124)
||||+|||||+||+|+|+||.++.+.||+|++...+.++|+||||+|||||++++||+++ .|||+|+... ..+||||.
T Consensus 174 ~HehsR~DRD~yV~I~~~ni~~~~~~nF~k~~~~~~~~~~~pYDygSvMHY~~~afs~~~~~~ti~~~~~~~~~~mGqr~ 253 (411)
T KOG3714|consen 174 WHEHSRPDRDNYVSINWDNIDPGQEYNFEKYSPDEVTTYGVPYDYGSVMHYAPYAFSKNGSLPTIVPKDNGFQNTMGQRE 253 (411)
T ss_pred hhccCcccccCceEEeeccCChhhhhhhhhcChhhhhccCCcccCCcccccCCcccCcCCCCCceecccccccccccccC
Confidence 899999999999999999999999999999999888999999999999999999999999 7799997653 45799999
Q ss_pred CCCHHHHHHHHhhCCCCCCCC
Q psy13283 79 GATEGDLEKVRQMYCKKNANT 99 (124)
Q Consensus 79 ~lS~~Di~~IN~lY~C~~~~~ 99 (124)
+||+.|+.+||+||+|+..+.
T Consensus 254 ~~S~~Di~~iN~~Y~C~~~~~ 274 (411)
T KOG3714|consen 254 RLSFYDIRKINKLYCCPECCE 274 (411)
T ss_pred cCCHHHHHHHHhhcCCCccCc
Confidence 999999999999999988754
No 5
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=100.00 E-value=5.1e-37 Score=228.02 Aligned_cols=92 Identities=42% Similarity=0.672 Sum_probs=86.9
Q ss_pred CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCC
Q psy13283 1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGA 80 (124)
Q Consensus 1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~l 80 (124)
+|||+|||||+||.|+|+||.++.+.||+|.+...+.++|+||||+|||||++++||++|.|||+|+......+|||.+|
T Consensus 89 ~HEh~R~DRD~yv~i~~~ni~~~~~~nf~~~~~~~~~~~~~~YDy~SiMhY~~~~fs~~~~~ti~~~~~~~~~~g~~~~~ 168 (180)
T cd04280 89 YHEQSRPDRDDYVTINWENIQPGYEHNFDKYSPDTVTTYGVPYDYGSVMHYGPTAFSKNGKPTIVPKDPGYQIIGQREGL 168 (180)
T ss_pred cchhcccccCCeEEEeecccChhHHHHhhhcCcccccccCCcCCcceEeccCCcccccCCCceEEECCchhhcccCCCCC
Confidence 69999999999999999999999999999999988888999999999999999999999999999976555558999999
Q ss_pred CHHHHHHHHhhC
Q psy13283 81 TEGDLEKVRQMY 92 (124)
Q Consensus 81 S~~Di~~IN~lY 92 (124)
|+.|+++||+||
T Consensus 169 S~~D~~~in~~Y 180 (180)
T cd04280 169 SFLDIKKINKMY 180 (180)
T ss_pred CHHHHHHHHHhC
Confidence 999999999998
No 6
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=100.00 E-value=1.1e-36 Score=228.08 Aligned_cols=96 Identities=31% Similarity=0.551 Sum_probs=69.2
Q ss_pred CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCCC-CCeEEecCC-CCccCCcCC
Q psy13283 1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNG-KDTIVAKKD-PKAILGQRR 78 (124)
Q Consensus 1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~g-~~Ti~~~~~-~~~~iGqr~ 78 (124)
+|||+|||||+||+|+|+||.++.+.||.+.+...+..+++||||+|||||++.+|++++ .|||+|+.. ...+||++.
T Consensus 94 ~HEh~RpDRd~yi~i~~~~i~~~~~~~f~~~~~~~~~~~~~pYD~~SIMHY~~~~~s~~~~~~ti~~~~~~~~~~iG~~~ 173 (191)
T PF01400_consen 94 WHEHQRPDRDNYITINWDNIQPGYKHNFDKYPPSEWSTYGSPYDYGSIMHYSSYAFSKNGSQPTITPKDPKYQETIGQRN 173 (191)
T ss_dssp --GGGSTTGGGTEEE-GGGB-TTSGGGG---SGGGBE-TTS---TT-TT---TTTTBSSTTS-SEEESSTTCTS-GGG-S
T ss_pred hhhhhccccccEEEEehhcchhhhhhhhhccccccccccCCCcCccCeecccCcccccCCCCCeEEecCCCCcccccccC
Confidence 699999999999999999999999999999998888899999999999999999999998 999999754 479999999
Q ss_pred CCCHHHHHHHHhhCCCCC
Q psy13283 79 GATEGDLEKVRQMYCKKN 96 (124)
Q Consensus 79 ~lS~~Di~~IN~lY~C~~ 96 (124)
+||+.|+++||.+|+|+.
T Consensus 174 ~lS~~D~~~in~~Y~C~~ 191 (191)
T PF01400_consen 174 RLSFTDIKQINKMYNCPE 191 (191)
T ss_dssp S--HHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHhcCCCC
Confidence 999999999999999973
No 7
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=99.88 E-value=2.4e-23 Score=156.27 Aligned_cols=76 Identities=24% Similarity=0.357 Sum_probs=62.8
Q ss_pred CcccCCcCCCCceEEecc--Cccc-----------chh--hhhccccCCCccCCCcccccccCCCCC-CCcccCCCCCeE
Q psy13283 1 MHLKKNLAWRTAVRLDIK--FLVS-----------AYW--NDFGKASPKDVSDYGVPYDFQSVMHYP-AKAFSKNGKDTI 64 (124)
Q Consensus 1 ~HEh~RpDRD~yV~I~~~--NI~~-----------~~~--~nF~k~~~~~~~~~g~pYDy~SVMHY~-~~afs~~g~~Ti 64 (124)
+|||+||||| |.|+ +|.+ +.. .+|.|+... ..+|+||||+|||||+ +.+|+++|.+|
T Consensus 107 ~HEh~rpdrd----i~w~~~~i~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~yD~~SIMHY~~~~~~t~~g~~t- 179 (198)
T cd04327 107 IHEHQSPAAN----IPWDKEAVYAYFSGPPNWDRETVINHNVFAKLDDG--DVAYSPYDPDSIMHYPFPGSLTLDGEEV- 179 (198)
T ss_pred cccccCCCCC----CCcCHHHHHHHHhcCCCCcHHHHHHhhhhhccccc--cccCCCCCcHHHHcCCCcHHhhcCCccc-
Confidence 6999999999 6776 4432 223 789998753 5689999999999999 79999988765
Q ss_pred EecCCCCccCCcCCCCCHHHHHHHHhhCC
Q psy13283 65 VAKKDPKAILGQRRGATEGDLEKVRQMYC 93 (124)
Q Consensus 65 ~~~~~~~~~iGqr~~lS~~Di~~IN~lY~ 93 (124)
|++.+||..|+++||+||.
T Consensus 180 ----------~~~~~lS~~D~~~i~~~Yp 198 (198)
T cd04327 180 ----------PPNRTLSDKDKAFMRLLYP 198 (198)
T ss_pred ----------CCCCCCCHHHHHHHHHhCc
Confidence 6788999999999999994
No 8
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=99.32 E-value=1.8e-12 Score=93.34 Aligned_cols=57 Identities=23% Similarity=0.198 Sum_probs=50.3
Q ss_pred CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCC
Q psy13283 1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGA 80 (124)
Q Consensus 1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~l 80 (124)
.|||+|+|||.|| ..++.|||+.|||||....|+.+ ..+|++..|
T Consensus 109 ~H~~~~~~~~~~~-----------------------~~~~~~~~~~SvM~y~~~~~~~~------------~~~~~~~~~ 153 (165)
T cd04268 109 RHNFAASDRDDNV-----------------------DLLAEKGDTSSVMDYAPSNFSIQ------------LGDGQKYTI 153 (165)
T ss_pred cccCcCCccCCcc-----------------------hhhccCCCCcccCCCCccccccc------------cccccCCCC
Confidence 5999999999988 45788999999999999988764 346788899
Q ss_pred CHHHHHHHHhhC
Q psy13283 81 TEGDLEKVRQMY 92 (124)
Q Consensus 81 S~~Di~~IN~lY 92 (124)
|..||++|+.||
T Consensus 154 ~~~Di~ai~~lY 165 (165)
T cd04268 154 GPYDIAAIKKLY 165 (165)
T ss_pred CHHHHHHHHhcC
Confidence 999999999998
No 9
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=98.60 E-value=6e-08 Score=69.59 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=47.4
Q ss_pred CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCC
Q psy13283 1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGA 80 (124)
Q Consensus 1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~l 80 (124)
.|++.|+|||.+|.| . ....+.+|++.|||||....|+ ++++..+
T Consensus 111 ~H~~~~~~~~~~~~~----------------~---~~~~~~~~~~~siM~y~~~~~~----------------~~~~~~f 155 (167)
T cd00203 111 YHDHDRKDRDDYPTI----------------D---DTLNAEDDDYYSVMSYTKGSFS----------------DGQRKDF 155 (167)
T ss_pred CccCcCCCCCCCccc----------------c---ccccCCCCCCCeEeccCccccC----------------cccCCCc
Confidence 599999999999887 1 1335679999999999866553 5778889
Q ss_pred CHHHHHHHHhhC
Q psy13283 81 TEGDLEKVRQMY 92 (124)
Q Consensus 81 S~~Di~~IN~lY 92 (124)
|..|+.+|+++|
T Consensus 156 S~~d~~~i~~~Y 167 (167)
T cd00203 156 SQCDIDQINKLY 167 (167)
T ss_pred CHHHHHHHHhhC
Confidence 999999999998
No 10
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=71.42 E-value=6.8 Score=27.76 Aligned_cols=17 Identities=12% Similarity=0.399 Sum_probs=15.0
Q ss_pred CCCCCHHHHHHHHhhCC
Q psy13283 77 RRGATEGDLEKVRQMYC 93 (124)
Q Consensus 77 r~~lS~~Di~~IN~lY~ 93 (124)
...||..|+..|+.||.
T Consensus 141 ~~~l~~~D~~~~~~lYg 157 (157)
T cd04278 141 KFKLSQDDIRGIQALYG 157 (157)
T ss_pred CCCCCHHHHHHHHHhcC
Confidence 46799999999999994
No 11
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=60.74 E-value=9.1 Score=29.46 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=14.6
Q ss_pred cCCCCCHHHHHHHHhhC
Q psy13283 76 QRRGATEGDLEKVRQMY 92 (124)
Q Consensus 76 qr~~lS~~Di~~IN~lY 92 (124)
....+|..|+..|+.||
T Consensus 195 ~~~~f~~~Di~Al~~lY 211 (211)
T PF12388_consen 195 EDGEFTSNDITALNYLY 211 (211)
T ss_pred CCCCcChhhHHHHHhhC
Confidence 34569999999999998
No 12
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=51.11 E-value=16 Score=26.47 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=15.5
Q ss_pred CcCCCCCHHHHHHHHhhCC
Q psy13283 75 GQRRGATEGDLEKVRQMYC 93 (124)
Q Consensus 75 Gqr~~lS~~Di~~IN~lY~ 93 (124)
+.-..+...||+.|..||.
T Consensus 168 ~~~~~~~~~DI~AlQ~lYG 186 (186)
T cd04277 168 GYPQTPMLLDIAALQYLYG 186 (186)
T ss_pred cccCCccHHHHHHHHHhhC
Confidence 3446788999999999994
No 13
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=41.74 E-value=37 Score=25.58 Aligned_cols=40 Identities=23% Similarity=0.171 Sum_probs=24.8
Q ss_pred cccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCCCHHHHHHHHhhCC
Q psy13283 45 FQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYC 93 (124)
Q Consensus 45 y~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~lS~~Di~~IN~lY~ 93 (124)
..|||-|.+......+ .+.. -.-...+-..|+..|..+|.
T Consensus 157 ~~SVMdY~~~~~~~~~-------~~~~--~~~~~~~g~yDi~Aiq~~Y~ 196 (197)
T cd04276 157 TSSVMDYPPPNVAAQG-------EDQG--DYYPPTIGPYDKWAIEYGYT 196 (197)
T ss_pred cceeecCccccccccC-------cccc--ccccCCCchHHHHHHHHHcC
Confidence 4699999865543322 0111 12234577789999999994
No 14
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=28.29 E-value=39 Score=23.22 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHhhCC
Q psy13283 79 GATEGDLEKVRQMYC 93 (124)
Q Consensus 79 ~lS~~Di~~IN~lY~ 93 (124)
.||..|+..|++||+
T Consensus 140 ~l~~~Di~~i~~lYg 154 (154)
T PF00413_consen 140 TLSEDDIDGIQYLYG 154 (154)
T ss_dssp STTHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHhC
Confidence 899999999999995
No 15
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=26.73 E-value=31 Score=25.87 Aligned_cols=30 Identities=10% Similarity=0.386 Sum_probs=22.9
Q ss_pred HHHHHHHhhCC-CCCCCCCCChhhhccCccc
Q psy13283 83 GDLEKVRQMYC-KKNANTDDGLDEVEDNRLL 112 (124)
Q Consensus 83 ~Di~~IN~lY~-C~~~~~~~g~~~~~~~~~~ 112 (124)
..+.+||-=|| |++.+.-+|..-|.||+|+
T Consensus 48 I~~~~iNDdyCDC~DGSDEPGTsAC~~~~Fy 78 (176)
T PF12999_consen 48 IPFSQINDDYCDCPDGSDEPGTSACSNGKFY 78 (176)
T ss_pred ecHHHccCcceeCCCCCCccccccCcCceEe
Confidence 45667888886 8888777788888777765
No 16
>KOG2397|consensus
Probab=24.32 E-value=47 Score=28.64 Aligned_cols=28 Identities=7% Similarity=0.318 Sum_probs=24.4
Q ss_pred HHHHHhhCC-CCCCCCCCChhhhccCccc
Q psy13283 85 LEKVRQMYC-KKNANTDDGLDEVEDNRLL 112 (124)
Q Consensus 85 i~~IN~lY~-C~~~~~~~g~~~~~~~~~~ 112 (124)
+.+||..|| |.+...-+|..-|-||.|+
T Consensus 56 f~qlNDd~CDC~DGsDEPGtsACpngkF~ 84 (480)
T KOG2397|consen 56 FSQLNDDSCDCLDGSDEPGTSACPNGKFY 84 (480)
T ss_pred HHHhccccccCCCCCCCCccccCCCCcee
Confidence 578999996 8888888999999999886
No 17
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=21.18 E-value=49 Score=22.62 Aligned_cols=18 Identities=33% Similarity=0.803 Sum_probs=12.4
Q ss_pred hhccccCCCccCCCccccccc
Q psy13283 27 DFGKASPKDVSDYGVPYDFQS 47 (124)
Q Consensus 27 nF~k~~~~~~~~~g~pYDy~S 47 (124)
+|.+.. .+..|+||||+|
T Consensus 123 ~~~~~~---~~~~~~~~~yg~ 140 (140)
T smart00235 123 NFDLSN---DDSLGIPYDYGS 140 (140)
T ss_pred cccccc---ccCCCchhccCc
Confidence 555542 256789999987
Done!