RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13283
(124 letters)
>gnl|CDD|239807 cd04280, ZnMc_astacin_like, Zinc-dependent metalloprotease,
astacin_like subfamily or peptidase family M12A, a group
of zinc-dependent proteolytic enzymes with a HExxH
zinc-binding site/active site. Members of this family
may have an amino terminal propeptide, which is cleaved
to yield the active protease domain, which is
consequently always found at the N-terminus in
multi-domain architectures. This family includes:
astacin, a digestive enzyme from Crayfish; meprin, a
multiple domain membrane component that is constructed
from a homologous alpha and beta chain, proteins
involved in (bone) morphogenesis, tolloid from
drosophila, and the sea urchin SPAN protein, which may
also play a role in development.
Length = 180
Score = 108 bits (271), Expect = 6e-31
Identities = 37/69 (53%), Positives = 47/69 (68%)
Query: 24 YWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEG 83
Y ++F K SP V+ YGVPYD+ SVMHY AFSKNGK TIV K I+GQR G +
Sbjct: 112 YEHNFDKYSPDTVTTYGVPYDYGSVMHYGPTAFSKNGKPTIVPKDPGYQIIGQREGLSFL 171
Query: 84 DLEKVRQMY 92
D++K+ +MY
Sbjct: 172 DIKKINKMY 180
>gnl|CDD|201773 pfam01400, Astacin, Astacin (Peptidase family M12A). The members
of this family are enzymes that cleave peptides. These
proteases require zinc for catalysis. Members of this
family contain two conserved disulphide bridges, these
are joined 1-4 and 2-3. Members of this family have an
amino terminal propeptide which is cleaved to give the
active protease domain. All other linked domains are
found to the carboxyl terminus of this domain. This
family includes: Astacin, a digestive enzyme from
Crayfish. Meprin, a multiple domain membrane component
that is constructed from a homologous alpha and beta
chain. Proteins involved in morphogenesis such as human
bone morphogenetic protein 1, and Tolloid from
Drosophila melanogaster.
Length = 191
Score = 90.8 bits (226), Expect = 4e-24
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 24 YWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNG-KDTIVAKK-DPKAILGQRRGAT 81
+F K P +V GVPYD+ S+MHY AFSKNG TIV K D +A +GQR +
Sbjct: 117 QEGNFEKYDPDEVDSLGVPYDYGSIMHYGPYAFSKNGYLPTIVPKDNDYQATIGQRDKLS 176
Query: 82 EGDLEKVRQMY-CK 94
GD+EK+ ++Y C
Sbjct: 177 FGDIEKINKLYKCP 190
>gnl|CDD|239810 cd04283, ZnMc_hatching_enzyme, Zinc-dependent metalloprotease,
hatching enzyme-like subfamily. Hatching enzymes are
secreted by teleost embryos to digest the egg envelope
or chorion. In some teleosts, the hatching enzyme may be
a system consisting of two evolutionary related
metalloproteases, high choriolytic enzyme and low
choriolytic enzyme (HCE and LCE), which may have
different substrate specificities and cooperatively
digest the chorion.
Length = 182
Score = 78.1 bits (193), Expect = 3e-19
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 27 DFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLE 86
+F K D ++ G PYD+ SVMHY AFS NGK TIV DP +GQR+G + D+
Sbjct: 118 NFDKQ---DTNNLGTPYDYSSVMHYGRYAFSINGKPTIVPIPDPNVPIGQRQGMSNLDIL 174
Query: 87 KVRQMYC 93
++ ++Y
Sbjct: 175 RINKLYN 181
>gnl|CDD|239808 cd04281, ZnMc_BMP1_TLD, Zinc-dependent metalloprotease;
BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic
protein 1) and TLD (tolloid)-like metalloproteases play
vital roles in extracellular matrix formation, by
cleaving precursor proteins such as enzymes, structural
proteins, and proteins involved in the mineralization of
the extracellular matrix. The drosophila protein tolloid
and its Xenopus homologue xolloid cleave and inactivate
Sog and chordin, respectively, which are inhibitors of
Dpp (the Drosophila decapentaplegic gene product) and
its homologue BMP4, involved in dorso-ventral
patterning.
Length = 200
Score = 62.8 bits (153), Expect = 3e-13
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 26 NDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGK-DTIVAKKDPKAI---LGQRRGAT 81
+F K P++V G PYDF S+MHY FS+ DTI+ K+DP + +GQR +
Sbjct: 127 YNFLKMEPEEVDSLGEPYDFDSIMHYARNTFSRGMFLDTILPKRDPNGVRPEIGQRTRLS 186
Query: 82 EGDLEKVRQMY 92
EGD+ + ++Y
Sbjct: 187 EGDIIQANKLY 197
>gnl|CDD|239809 cd04282, ZnMc_meprin, Zinc-dependent metalloprotease, meprin_like
subfamily. Meprins are membrane-bound or secreted
extracellular proteases, which cleave a variety of
targets, including peptides such as parathyroid hormone,
gastrin, and cholecystokinin, cytokines such as
osteopontin, and proteins such as collagen IV,
fibronectin, casein and gelatin. Meprins may also be
able to release proteins from the cell surface. Closely
related meprin alpha- and beta-subunits form homo- and
hetero-oligomers; these complexes are found on
epithelial cells of the intestine, for example, and are
also expressed in certain cancer cells.
Length = 230
Score = 57.9 bits (140), Expect = 3e-11
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 20 LVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKD-TIVAK-KDPKAILGQR 77
++S ++F K +D PYD++SVMHY +F+K + TI K + I+GQR
Sbjct: 154 ILSGREHNFNKYDDSFSTDLNTPYDYESVMHYSPFSFNKGASEPTITTKIPEFNDIIGQR 213
Query: 78 RGATEGDLEKVRQMY 92
++ DLE++ +MY
Sbjct: 214 LDFSDIDLERLNRMY 228
>gnl|CDD|239819 cd04327, ZnMc_MMP_like_3, Zinc-dependent metalloprotease; MMP_like
sub-family 3. A group of bacterial and fungal
metalloproteinase domains similar to matrix
metalloproteinases and astacin.
Length = 198
Score = 30.8 bits (70), Expect = 0.11
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 26 NDFGKASPKDVSDYGVPYDFQSVMHYP-AKAFSKNGKDT 63
N F K DV PYD S+MHYP + + +G++
Sbjct: 143 NVFAKLDDGDV--AYSPYDPDSIMHYPFPGSLTLDGEEV 179
>gnl|CDD|239796 cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like
subfamily. This group contains matrix metalloproteinases
(MMPs), serralysins, and the astacin_like family of
proteases.
Length = 165
Score = 29.4 bits (66), Expect = 0.37
Identities = 13/51 (25%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 26 NDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKD---TIVAKKDPKAI 73
N +V D SVM Y FS D + D AI
Sbjct: 111 NFAASDRDDNVDLLAEKGDTSSVMDYAPSNFSIQLGDGQKYTIGPYDIAAI 161
>gnl|CDD|235177 PRK03934, PRK03934, phosphatidylserine decarboxylase; Provisional.
Length = 265
Score = 27.6 bits (62), Expect = 1.5
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 32 SPKDVSDYGVPYDFQ--SVMHYPAKAFSKN 59
SPKD Y P D + + P K + N
Sbjct: 124 SPKDYHRYHAPCDLEILEARYIPGKLYPVN 153
>gnl|CDD|131371 TIGR02318, phosphono_phnM, phosphonate metabolism protein PhnM.
This family consists of proteins from in the PhnM
family. PhnM is a a protein associated with phosphonate
utilization in a number of bacterial species. In
Pseudomonas stutzeri WM88, a protein that is part of a
system for the oxidation of phosphites (another form of
reduced phosphorous compound) scores between trusted and
noise cutoffs [Energy metabolism, Other].
Length = 376
Score = 26.9 bits (60), Expect = 2.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 75 GQRRGATEGDLEKVRQMYCKKNANTDDGLDEVEDNRL 111
GQR+ DLEK R+ Y K +DD DE+ + R+
Sbjct: 167 GQRQFR---DLEKYREYYRGKRGLSDDEFDEIVEERI 200
>gnl|CDD|220767 pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7
(DPP-7) is the best characterized member of this family.
It is a serine peptidase that is located on the cell
surface and is predicted to have two N-terminal
transmembrane domains.
Length = 696
Score = 27.2 bits (61), Expect = 3.0
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 65 VAKKDPKAILGQRRGATEGDLEKVRQMYCKKNANTDDGLDEVEDNRLLDELSKK 118
+AK+ K + G E DL ++ Q + + D +D+ +L+E +
Sbjct: 391 LAKEREKPDAEREPGYQERDLPRLEQQLERIDKPYDAEVDKAVLAAMLEEYREL 444
>gnl|CDD|237967 PRK15446, PRK15446, phosphonate metabolism protein PhnM;
Provisional.
Length = 383
Score = 26.7 bits (60), Expect = 4.1
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 75 GQRRGATEGDLEKVRQMYCKKNANTDDGLDEVEDNRL 111
GQR+ DLEK R+ Y K +D+ D + R+
Sbjct: 172 GQRQ---FRDLEKYREYYAGKYGLSDEEFDAFVEERI 205
>gnl|CDD|226393 COG3876, COG3876, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 409
Score = 26.3 bits (58), Expect = 4.4
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 35 DVSDYGV-PYDFQSVMHYPAKAFSKNGKDTIV 65
D+ D GV Y + M Y +A ++NGK+ IV
Sbjct: 130 DIQDVGVRSYTYIYTMAYAMEASAENGKEFIV 161
>gnl|CDD|188964 cd09565, SAM_liprin-alpha1,2,3,4_repeat2, SAM domain of
liprin-alpha1,2,3,4 proteins repeat 2. SAM (sterile
alpha motif) domain repeat 2 of liprin-alpha1,2,3,4
proteins is a protein-protein interaction domain.
Liprin-alpha proteins contain three copies (repeats) of
SAM domain. They may form heterodimers with liprin-beta
proteins through their SAM domains. Liprins were
originally identified as LAR (leukocyte common
antigen-related) transmembrane protein-tyrosine
phosphatase-interacting proteins. They participate in
mammary gland development, and in axon guidance; in
particular, liprin-alpha is involved in formation of the
presynaptic active zone.
Length = 66
Score = 25.1 bits (55), Expect = 4.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 108 DNRLLDELSKKDSRNFL 124
D R+LD L+KKD R L
Sbjct: 29 DARMLDHLTKKDLRTHL 45
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 26.3 bits (58), Expect = 4.9
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 65 VAKKDPKAILGQRRGATEGDLEKV-RQMYCKKNANTDDGLDEVEDN 109
+A KD +LG +GA++ +++K R++ K + + + G E E+
Sbjct: 1 MASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEK 46
>gnl|CDD|215685 pfam00060, Lig_chan, Ligand-gated ion channel. This family
includes the four transmembrane regions of the
ionotropic glutamate receptors and NMDA receptors.
Length = 268
Score = 26.1 bits (58), Expect = 5.8
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 71 KAILGQRRGATEGDLEKVRQMYCKKNANTDDGLDEVEDNRL 111
+AIL R G+L+K+ + KK V ++L
Sbjct: 215 RAILELRE---SGELQKLENKWWKKKGECSLKSTAVSSSQL 252
>gnl|CDD|205895 pfam13720, Acetyltransf_11, Udp N-acetylglucosamine
O-acyltransferase; Domain 2. This is domain 2, or the
C-terminal domain, of Udp N-acetylglucosamine
O-acyltransferase. This enzyme is a zinc-dependent
enzyme that catalyzes the deacetylation of
UDP-3-O-((R)-3-hydroxymyristoyl)-N-acetylglucosamine to
form UDP-3-O-(R-hydroxymyristoyl)glucosamine and
acetate.
Length = 82
Score = 25.1 bits (56), Expect = 6.4
Identities = 7/36 (19%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 76 QRRGATEGDLEKVRQMY---CKKNANTDDGLDEVED 108
+RRG ++ ++ +++ Y + ++ L+E+E+
Sbjct: 24 KRRGFSKEEIRALKRAYRLLYRSGLTLEEALEELEE 59
>gnl|CDD|222114 pfam13416, SBP_bac_8, Bacterial extracellular solute-binding
protein. This family includes bacterial extracellular
solute-binding proteins.
Length = 281
Score = 25.8 bits (57), Expect = 6.6
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 22 SAYWNDFGKASPKDVSDYGVPYDFQS--VMHYPAKAFSKN 59
D KA+ D YGVPY + V++Y K
Sbjct: 68 LDDLPDALKAATYDGKLYGVPYAAGTTYVLYYNKDLLEKA 107
>gnl|CDD|216234 pfam00998, RdRP_3, Viral RNA dependent RNA polymerase. This family
includes viral RNA dependent RNA polymerase enzymes from
hepatitis C virus and various plant viruses.
Length = 486
Score = 26.0 bits (58), Expect = 6.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 54 KAFSKNGKDTIVAKKDPKAILGQRR 78
K F K K I AK DP + Q R
Sbjct: 123 KTFVKAEKINITAKPDPAPRVIQPR 147
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 25.7 bits (56), Expect = 8.6
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 65 VAKKDPKAILGQRRGATEGDLEKVRQMYCKK---NANTDDGLDE--VEDNRLLDELSKKD 119
+A KD AILG + A++ +++K + +K + N G +E E N LS +
Sbjct: 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPE 60
Query: 120 SRNF 123
R
Sbjct: 61 KRRI 64
>gnl|CDD|183934 PRK13270, treF, trehalase; Provisional.
Length = 549
Score = 25.5 bits (56), Expect = 8.7
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 3 LKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVS 37
L N A+R VR+ L++ YW+D + +P+D S
Sbjct: 263 LIPNQAYRHVVRMPDGSLLNRYWDD--RDTPRDES 295
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 25.5 bits (56), Expect = 8.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 64 IVAKKDPKAILGQRRGATEGDLEKVRQMYCKK 95
+ AKKD ILG R ATE +++K + KK
Sbjct: 1 MAAKKDYYEILGVDRNATEEEIKKAYRRLAKK 32
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.394
Gapped
Lambda K H
0.267 0.0883 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,263,896
Number of extensions: 538815
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 417
Number of HSP's successfully gapped: 40
Length of query: 124
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 39
Effective length of database: 7,167,512
Effective search space: 279532968
Effective search space used: 279532968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (23.9 bits)