RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13283
(124 letters)
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative
splicing, calcium, chondrogenesis, cleavage on PAIR of
basic residues, cytokine; 1.25A {Homo sapiens} PDB:
3edg_A 3edi_A
Length = 201
Score = 95.2 bits (237), Expect = 6e-26
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 13 VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKN-GKDTIVAKKDPK 71
V + + + +F K P++V G YDF S+MHY FS+ DTIV K +
Sbjct: 114 VSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVN 173
Query: 72 AI---LGQRRGATEGDLEKVRQMY-C 93
+ +GQR ++GD+ + R++Y C
Sbjct: 174 GVKPPIGQRTRLSKGDIAQARKLYKC 199
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease,
astacin, metal- protease; 1.10A {Danio rerio}
Length = 199
Score = 93.3 bits (232), Expect = 4e-25
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 13 VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKN-GKDTIVAKKDPK 71
VR++ + +F K + ++ PYD+ S+MHY AF+ G +TI D
Sbjct: 120 VRINWNNISPGMAYNFLK---QKTNNQNTPYDYGSLMHYGKTAFAIQPGLETITPIPDEN 176
Query: 72 AILGQRRGATEGDLEKVRQMY-C 93
+GQR+G ++ D+ ++ ++Y C
Sbjct: 177 VQIGQRQGLSKIDILRINKLYGC 199
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme,
protease, Z disulfide bond, hydrolase, metal-binding,
metalloprotease,; 1.45A {Astacus astacus} PDB: 1iab_A
1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Length = 235
Score = 89.9 bits (223), Expect = 2e-23
Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 13 VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGK--DTIVAKKDP 70
V ++ + + + ++F + G Y + S+MHY +FS +TIV ++
Sbjct: 147 VTINYQNVDPSMTSNFDIDTYSR--YVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNG 204
Query: 71 KAI--LGQRRGATEGDLEKVRQMYC 93
+ + + D ++ +Y
Sbjct: 205 IDLTDPYDKAHMLQTDANQINNLYT 229
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 1.6
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 37/108 (34%)
Query: 20 LVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRG 79
++S + + F V ++ D + V P SK D I+ KD
Sbjct: 21 ILSVFEDAF-------VDNF----DCKDVQDMPKSILSKEEIDHIIMSKDA--------- 60
Query: 80 ATEGDLEKVRQMY---CKKNANTDDGLDEVEDNRLLDELSKKDSRNFL 124
+ +++ K V+ + ++E+ + + FL
Sbjct: 61 -----VSGTLRLFWTLLSKQEEM------VQ--KFVEEVLRINY-KFL 94
Score = 26.4 bits (57), Expect = 3.4
Identities = 23/160 (14%), Positives = 44/160 (27%), Gaps = 52/160 (32%)
Query: 11 TAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQ-SVMHYPAKAFSKN---------- 59
+R++ KFL+S K + S Y Q ++ + F+K
Sbjct: 85 EVLRINYKFLMSPI-----KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 60 ----------------------GKDTIVAK--KDPKAI-----------LGQRRGATEGD 84
GK + K L + E
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETV 198
Query: 85 LEKVRQMYCKKNANTDDGLDEVEDNRLLDELSKKDSRNFL 124
LE ++++ + + N D + +L + + R L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 25.8 bits (57), Expect = 2.4
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 57 SKNGKDTIVAKKDPKAILGQRRGATEGDLEK-VRQMYCK 94
+ K+ +++ Q E + +K +R++Y K
Sbjct: 5 HHHLVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLK 43
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 26.5 bits (58), Expect = 2.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 100 DDGLDEVEDNRLLDELSKKDSRNFL 124
+DG DE L EL+ DS NFL
Sbjct: 25 EDGWDESTLELFLHELAVMDSNNFL 49
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 26.2 bits (57), Expect = 3.1
Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 53 AKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYCKKNANTDDGLDEVEDNRLL 112
+ D + PK + + L+++ ++ + ++G+D+ + L
Sbjct: 14 LVPRGSHMLDFNIEGLIPKNMEKRGELVLNEYLKEIEDVFNHRKIP-ENGIDDEKIKLFL 72
Query: 113 DELSKKDSRNFL 124
LS D+
Sbjct: 73 KFLSMMDTDKDP 84
>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase;
HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1
b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A*
1we5_A*
Length = 773
Score = 26.2 bits (58), Expect = 3.9
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 9 WRTAVRLDIKFLVSAYWNDFGKASPKDVSDYG 40
+ ++ + V + DFG+ P DV +
Sbjct: 398 YADKLKGLVAMGVDCFKTDFGERIPTDVQWFD 429
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 25.4 bits (55), Expect = 6.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 100 DDGLDEVEDNRLLDELSKKDSRNFL 124
++G DE L EL+ DS NFL
Sbjct: 43 ENGWDESTLELFLHELAIMDSNNFL 67
>1zp7_A Recombination protein U; recombination,DNA-binding
protein,resolvase, DNA binding protein; 2.25A {Bacillus
subtilis} PDB: 1rzn_A
Length = 206
Score = 25.2 bits (55), Expect = 6.5
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 48 VMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGAT-EGDLEKVRQMYCKKN 96
++ YP + +A RG T E DL + + Y
Sbjct: 1 MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQ 50
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 24.3 bits (53), Expect = 8.4
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 57 SKNGKDTIVAKKDPKAILGQRRGATEGDLEK 87
S + D ++ +LG AT+ ++
Sbjct: 6 SGSQGDCSYSRTALYDLLGVPSTATQAQIKA 36
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 24.2 bits (53), Expect = 9.6
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 60 GKDTIVAKKDPKAILGQRRGATEGDLEK 87
G + +LG + A+ D++K
Sbjct: 1 GSSGSSGMANYYEVLGVQASASPEDIKK 28
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.394
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,892,187
Number of extensions: 103871
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 25
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.0 bits)