RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13283
         (124 letters)



>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish
           (Astacus astacus) [TaxId: 6715]}
          Length = 200

 Score = 67.1 bits (163), Expect = 2e-15
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 13  VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKN--GKDTIVAKKDP 70
           V ++ + +  +  ++F   +       G  Y + S+MHY   +FS      +TIV  ++ 
Sbjct: 113 VTINYQNVDPSMTSNFDIDTYSRY--VGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNG 170

Query: 71  KAI--LGQRRGATEGDLEKVRQMYC 93
             +     +    + D  ++  +Y 
Sbjct: 171 IDLTDPYDKAHMLQTDANQINNLYT 195


>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase
           (CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 174

 Score = 26.9 bits (58), Expect = 0.52
 Identities = 5/69 (7%), Positives = 13/69 (18%), Gaps = 17/69 (24%)

Query: 24  YWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEG 83
                               D  ++M      +       +                 + 
Sbjct: 119 DIFLVAVHELGHALGLEHSSDPSAIMAPFY-QWMDTENFVL----------------PDD 161

Query: 84  DLEKVRQMY 92
           D   ++Q+Y
Sbjct: 162 DRRGIQQLY 170


>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 445

 Score = 27.2 bits (59), Expect = 0.61
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 100 DDGLDEVEDNRLLDELSKKDSRNFL 124
           +DG DE      L EL+  DS NFL
Sbjct: 21  EDGWDESTLELFLHELAVMDSNNFL 45


>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 77

 Score = 23.5 bits (50), Expect = 4.2
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 67 KKDPKAILGQRRGATEGDLEKVRQMYCKKN 96
           KD    LG  RGA++ ++++  +    + 
Sbjct: 2  GKDYYQTLGLARGASDEEIKRAYRRQALRY 31


>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
           {Escherichia coli [TaxId: 562]}
          Length = 75

 Score = 23.4 bits (50), Expect = 4.4
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 66  AKKDPKAILGQRRGATEGDLEK---VRQMYCKKNANTDDGLDE 105
           AK+D   ILG  + A E ++ K      M    + N  D   E
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAE 43


>d1dq3a2 d.50.3.1 (A:336-414) PI-Pfui intein middle domain
          {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 79

 Score = 23.5 bits (50), Expect = 5.2
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 5/46 (10%)

Query: 39 YGVPYDFQSVMHYPAK---AFSKNGKDTIVAKKDPKAILGQ--RRG 79
          +G+P +F +   + ++    F  NG  TI    D +  LGQ   R 
Sbjct: 3  FGLPLNFNAFKEWASEYGVEFKTNGSQTIAIINDERISLGQWHTRN 48


>d1qsma_ d.108.1.1 (A:) Histone acetyltransferase HPA2 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 150

 Score = 23.9 bits (50), Expect = 6.0
 Identities = 6/46 (13%), Positives = 16/46 (34%)

Query: 78  RGATEGDLEKVRQMYCKKNANTDDGLDEVEDNRLLDELSKKDSRNF 123
           R  TE D E  ++++       +    +  D+         + + +
Sbjct: 6   RFVTENDKEGWQRLWKSYQDFYEVSFPDDLDDFNFGRFLDPNIKMW 51


>d1nyna_ d.235.1.1 (A:) Hypothetical protein Yhr087W {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 111

 Score = 23.6 bits (51), Expect = 6.1
 Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 49 MHYPAKAFSKNGKDTI-VAKKDPKAILGQRRGATEGDLEKVRQMYC 93
          M    K F K     + V     + +    +  + G L +V +++ 
Sbjct: 1  MSTVTKYFYKGENTDLIVFAASEELVDEYLKNPSIGKLSEVVELFE 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 463,501
Number of extensions: 19545
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 12
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.6 bits)