BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13284
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 61/73 (83%)
Query: 25 SSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSD 84
S M+DYY+VL V +Q+S+ IKKAYRKLALKWHPDKNP+N+ EA ++FK+++EAYEVLSD
Sbjct: 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSD 65
Query: 85 EKKRRIYDDRGKG 97
KKR IYD G G
Sbjct: 66 AKKRDIYDRYGSG 78
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 57/71 (80%)
Query: 25 SSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSD 84
S M +YY+VLGV +S DIKKAYRKLAL+WHPDKNPDN+ EA KKFK +SEAYEVLSD
Sbjct: 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD 65
Query: 85 EKKRRIYDDRG 95
KKR +YD G
Sbjct: 66 SKKRSLYDRAG 76
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 56/72 (77%)
Query: 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEK 86
M YY++L V + +S DIKKAYR+ AL+WHPDKNPDN+ A KKFKE++EAYEVLSD+
Sbjct: 1 MASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKH 60
Query: 87 KRRIYDDRGKGG 98
KR IYD G+ G
Sbjct: 61 KREIYDRYGREG 72
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 31 YKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRI 90
Y VLG+DK +++ DIKK+YRKLALK+HPDKNPDN EA KFKEI+ A+ +L+D KR I
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN-PEAADKFKEINNAHAILTDATKRNI 78
Query: 91 YDDRGKGGYEDSRQRG 106
YD G G + Q G
Sbjct: 79 YDKYGSLGLYVAEQFG 94
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 53/67 (79%), Gaps = 4/67 (5%)
Query: 30 YYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRR 89
YY VLGV +S ++KKAYRK+ALK+HPDKNPD ++FK+IS+AYEVLSDEKKR+
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD----GAEQFKQISQAYEVLSDEKKRQ 65
Query: 90 IYDDRGK 96
IYD G+
Sbjct: 66 IYDQGGE 72
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY++LGV K + +I+KAY++LA+K+HPD+N ++ EA KFKEI EAYEVL+D +KR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQKR 62
Query: 89 RIYDDRGKGGYE 100
YD G +E
Sbjct: 63 AAYDQYGHAAFE 74
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 52/67 (77%), Gaps = 4/67 (5%)
Query: 30 YYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRR 89
YY VLGV ++ ++KKAYRKLALK+HPDKNP N+ E KFK+IS+AYEVLSD KKR
Sbjct: 8 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNP-NEGE---KFKQISQAYEVLSDAKKRE 63
Query: 90 IYDDRGK 96
+YD G+
Sbjct: 64 LYDKGGE 70
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY++LGV K + +I+KAY++LA+K+HPD+N ++ EA KFKEI EAYEVL+D +KR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQKR 62
Query: 89 RIYDDRGKGGYE 100
YD G +E
Sbjct: 63 AAYDQYGHAAFE 74
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY++LGV K + +I+KAY++LA+K+HPD+N ++ EA KFKEI EAYEVL+D +KR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQKR 62
Query: 89 RIYDDRGKGGYE 100
YD G +E
Sbjct: 63 AAYDQYGHAAFE 74
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
++Y +LGV K +S+ +I++A++KLALK HPDKNP+N + A+ F +I+ AYEVL DE R
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPN-AHGDFLKINRAYEVLKDEDLR 80
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKY 114
+ YD G+ G ED+ Q G+Y S + Y
Sbjct: 81 KKYDKYGEKGLEDN-QGGQYESWSYY 105
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
++Y +LGV K +S+ +I++A++KLALK HPDKNP+N + A+ F +I+ AYEVL DE R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPN-AHGDFLKINRAYEVLKDEDLR 61
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKY 114
+ YD G+ G ED+ Q G+Y S + Y
Sbjct: 62 KKYDKYGEKGLEDN-QGGQYESWSYY 86
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 54/74 (72%), Gaps = 4/74 (5%)
Query: 26 SMLDY--YKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLS 83
S LD+ Y+VLGV + +S DIKKAY+KLA +WHPDKN D +E +F +IS+AYE+LS
Sbjct: 13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAE--DRFIQISKAYEILS 70
Query: 84 DEKKRRIYDDRGKG 97
+E+KR YD G G
Sbjct: 71 NEEKRTNYDHYGSG 84
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 23 SHSSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVL 82
S S DYY++LGV + +S +IKKAY +LA K+HPD N D+ +A +KF +++EAYEVL
Sbjct: 2 SSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD-PKAKEKFSQLAEAYEVL 60
Query: 83 SDEKKRRIYDDRGKG 97
SDE KR+ YD G G
Sbjct: 61 SDEVKRKQYDAYGSG 75
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY+ LG+ + +S +IK+AYR+ AL++HPDKN + A +KFKEI+EAY+VLSD +KR
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKN--KEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 89 RIYDDRGKGGYEDS 102
I+D G+ G + S
Sbjct: 62 EIFDRYGEEGLKGS 75
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 23 SHSSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVL 82
S S DYY++LGV + +S D+KKAYR+LALK+HPDKN + A + FK I AY VL
Sbjct: 2 SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKN--HAPGATEAFKAIGTAYAVL 59
Query: 83 SDEKKRRIYDDRGKG 97
S+ +KR+ YD G G
Sbjct: 60 SNPEKRKQYDQFGSG 74
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 30 YYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRR 89
YY +LGV K +S IKKA+ KLA+K+HPDKN +EA KF+EI+EAYE LSD +R+
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEA--KFREIAEAYETLSDANRRK 66
Query: 90 IYDDRGKGGY 99
YD G +
Sbjct: 67 EYDTLGHSAF 76
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY +LGV IK AYR+LA K+HPD + +N +EA KFK+++EA+EVL DE++R
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEA--KFKDLAEAWEVLKDEQRR 86
Query: 89 RIYDD----RGKGGYEDSRQ 104
YD R G+ RQ
Sbjct: 87 AEYDQLWQHRNDPGFGRQRQ 106
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 4/65 (6%)
Query: 31 YKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRI 90
Y +LGV ++ ++KK YRK ALK+HPDK P +E KFKEISEA+E+L+D +KR I
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDK-PTGDTE---KFKEISEAFEILNDPQKREI 66
Query: 91 YDDRG 95
YD G
Sbjct: 67 YDQYG 71
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 6/70 (8%)
Query: 25 SSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPD--KNPDNQSEANKKFKEISEAYEVL 82
S + DYY ++GV IK AYR+LA K+HPD K PD A +FKE++EA+EVL
Sbjct: 2 SELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD----AEARFKEVAEAWEVL 57
Query: 83 SDEKKRRIYD 92
SDE++R YD
Sbjct: 58 SDEQRRAEYD 67
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPD--KNPDNQSEANKKFKEISEAYEVLSDEK 86
DYYK+LGV + + +I KAYRKLAL+WHPD +N + + +A KKF +I+ A EVLSD +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 87 KRRIYDD 93
R+ +DD
Sbjct: 443 MRKKFDD 449
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPD--KNPDNQSEANKKFKEISEAYEVLSDEK 86
DYYK+LGV + + +I KAYRKLAL+WHPD +N + + +A KKF +I+ A EVLSD +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 87 KRRIYDD 93
R+ +DD
Sbjct: 443 XRKKFDD 449
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDN-----QSEANKKFKEISEAYEVLS 83
D+Y +LG D ++ D+K+ Y+KL L +HPDK + E +KF EI +A+++L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 84 DEKKRRIYD 92
+E+ +R YD
Sbjct: 71 NEETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDN-----QSEANKKFKEISEAYEVLS 83
D+Y +LG D ++ D+K+ Y+KL L +HPDK + E +KF EI +A+++L
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 84 DEKKRRIYD 92
+E+ ++ YD
Sbjct: 77 NEETKKKYD 85
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY +LG D+ SS I ++ AL+ HPDK+P+N +A + F+++ +A E+L++E+ R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN-PKAVETFQKLQKAKEILTNEESR 79
Query: 89 RIYD 92
YD
Sbjct: 80 ARYD 83
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 31 YKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRI 90
Y +LGV ++ IK AY + +HPD+N +EA ++F IS+AY VL RR
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRN-SGSAEAAERFTRISQAYVVLGSATLRRK 78
Query: 91 YDDRGKGGYEDSRQRG 106
Y DRG ED R G
Sbjct: 79 Y-DRGLLSDEDLRGPG 93
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 46 KKAYRKLALKWHPDKNPDNQSEANKKFKEI 75
KK R+L LKWHPDKNP+N AN+ FK +
Sbjct: 34 KKIIRRLYLKWHPDKNPENHDIANEVFKHL 63
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 24 HSSMLDYYKVLGVDKQS-STGDIKKAYRKLALKWHPD--KNPDNQSEANKKFKEISEAYE 80
+ + + Y VL V+++ + KAYR LA K HPD KN + + A ++F+ I+ AYE
Sbjct: 11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYE 70
Query: 81 VLSDEKKRRIYD 92
L D++ + YD
Sbjct: 71 TLKDDEAKTNYD 82
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVL 82
D + +LGV +S ++ KAYRKLA+ HPDK SE FK + A L
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSE--DAFKAVVNARTAL 79
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 31 YKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSE--ANKKFKEISEAYEVLSDEKKR 88
+K +G+ + +KK YRK L HPDK E A F E+++A+ ++ ++
Sbjct: 52 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 111
Query: 89 RIY 91
+Y
Sbjct: 112 PLY 114
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 31 YKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSE--ANKKFKEISEAYEVLSDEKKR 88
+K +G + +KK YRK L HPDK E A F E+++A+ ++ ++
Sbjct: 39 WKPVGXADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWSEFENQGQK 98
Query: 89 RIY 91
+Y
Sbjct: 99 PLY 101
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 31 YKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSE--ANKKFKEISEAYEVLSDEKKR 88
+K +G+ + +KK YRK L HPDK E A F E+++A+ ++ ++
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179
Query: 89 RI 90
+
Sbjct: 180 PL 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,927,016
Number of Sequences: 62578
Number of extensions: 213179
Number of successful extensions: 530
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 64
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)