Query psy13284
Match_columns 230
No_of_seqs 339 out of 2427
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 15:32:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 2.9E-32 6.4E-37 249.7 12.5 100 27-145 3-102 (371)
2 KOG0713|consensus 99.9 4.6E-28 1E-32 217.8 8.1 76 26-102 14-89 (336)
3 PRK14288 chaperone protein Dna 99.9 2.5E-26 5.4E-31 212.4 10.0 73 28-101 3-75 (369)
4 PRK14296 chaperone protein Dna 99.9 4.6E-26 9.9E-31 210.8 9.8 72 28-101 4-75 (372)
5 KOG0712|consensus 99.9 5.7E-26 1.2E-30 205.9 8.6 75 27-105 3-77 (337)
6 PRK14286 chaperone protein Dna 99.9 1.3E-25 2.8E-30 207.8 10.9 103 28-144 4-106 (372)
7 PRK14299 chaperone protein Dna 99.9 9.1E-25 2E-29 196.1 12.4 106 28-145 4-109 (291)
8 PRK14285 chaperone protein Dna 99.9 4.3E-25 9.4E-30 203.9 10.6 104 28-144 3-106 (365)
9 PRK14276 chaperone protein Dna 99.9 5.1E-25 1.1E-29 204.3 10.5 72 28-101 4-75 (380)
10 PRK14287 chaperone protein Dna 99.9 6.1E-25 1.3E-29 203.3 10.2 72 28-101 4-75 (371)
11 PRK14277 chaperone protein Dna 99.9 1.4E-24 2.9E-29 201.9 11.2 73 28-101 5-77 (386)
12 PRK14297 chaperone protein Dna 99.9 1.2E-24 2.5E-29 201.9 10.6 73 28-101 4-76 (380)
13 PRK14282 chaperone protein Dna 99.9 1.5E-24 3.1E-29 200.6 10.4 73 28-100 4-76 (369)
14 PRK14298 chaperone protein Dna 99.9 1.9E-24 4.2E-29 200.3 10.1 73 27-101 4-76 (377)
15 PRK14294 chaperone protein Dna 99.9 2.6E-24 5.6E-29 198.7 10.4 73 28-101 4-76 (366)
16 PTZ00037 DnaJ_C chaperone prot 99.9 2.1E-24 4.6E-29 202.5 8.7 69 27-100 27-95 (421)
17 PRK14280 chaperone protein Dna 99.9 4.4E-24 9.6E-29 197.8 10.1 72 28-101 4-75 (376)
18 PRK14279 chaperone protein Dna 99.9 6.3E-24 1.4E-28 197.8 10.6 70 28-98 9-78 (392)
19 PRK14278 chaperone protein Dna 99.9 4.6E-24 1E-28 197.8 9.7 69 28-98 3-71 (378)
20 PRK14290 chaperone protein Dna 99.9 8.1E-24 1.7E-28 195.4 10.1 100 28-144 3-102 (365)
21 PRK14284 chaperone protein Dna 99.9 7.9E-24 1.7E-28 197.0 9.8 72 28-100 1-72 (391)
22 PRK14292 chaperone protein Dna 99.9 1.2E-23 2.6E-28 194.5 10.7 98 27-145 1-98 (371)
23 PRK14301 chaperone protein Dna 99.9 1.2E-23 2.5E-28 194.9 10.3 73 28-101 4-76 (373)
24 PRK14291 chaperone protein Dna 99.9 1.5E-23 3.2E-28 194.7 10.9 100 28-143 3-102 (382)
25 PRK14295 chaperone protein Dna 99.9 2.3E-23 5E-28 193.8 9.0 73 28-101 9-85 (389)
26 TIGR02349 DnaJ_bact chaperone 99.9 3.8E-23 8.2E-28 190.0 9.9 101 29-144 1-101 (354)
27 PRK10767 chaperone protein Dna 99.9 5.8E-23 1.3E-27 190.0 10.7 73 28-101 4-76 (371)
28 PRK14283 chaperone protein Dna 99.9 2.3E-23 4.9E-28 193.2 8.0 71 28-100 5-75 (378)
29 PRK14281 chaperone protein Dna 99.9 5.4E-23 1.2E-27 191.8 10.2 73 28-101 3-75 (397)
30 PRK10266 curved DNA-binding pr 99.9 4.6E-22 9.9E-27 179.7 10.6 69 27-97 3-71 (306)
31 PRK14300 chaperone protein Dna 99.9 4.8E-22 1E-26 184.0 9.2 72 28-101 3-74 (372)
32 KOG0691|consensus 99.9 5.2E-22 1.1E-26 178.1 8.2 90 27-144 4-93 (296)
33 PRK14293 chaperone protein Dna 99.9 8E-22 1.7E-26 182.6 9.7 71 28-100 3-73 (374)
34 PRK14289 chaperone protein Dna 99.9 1.7E-21 3.7E-26 181.1 10.1 73 28-101 5-77 (386)
35 KOG0716|consensus 99.9 4.6E-22 9.9E-27 174.4 5.8 73 28-101 31-103 (279)
36 KOG0717|consensus 99.9 6.8E-22 1.5E-26 183.5 6.9 78 24-101 4-81 (508)
37 KOG0718|consensus 99.8 2.2E-21 4.9E-26 180.3 8.6 75 27-101 8-84 (546)
38 KOG0715|consensus 99.8 2.2E-21 4.8E-26 174.1 7.8 69 28-98 43-111 (288)
39 PTZ00341 Ring-infected erythro 99.8 5.6E-21 1.2E-25 190.3 8.6 71 28-100 573-643 (1136)
40 PF00226 DnaJ: DnaJ domain; I 99.8 4.1E-20 8.9E-25 129.6 7.4 64 29-92 1-64 (64)
41 KOG0714|consensus 99.8 6.2E-20 1.3E-24 160.0 9.3 112 27-151 2-113 (306)
42 KOG0624|consensus 99.8 5.9E-20 1.3E-24 166.7 8.8 100 1-101 361-468 (504)
43 KOG0719|consensus 99.8 2.9E-19 6.4E-24 153.9 7.1 70 28-97 14-84 (264)
44 PHA03102 Small T antigen; Revi 99.8 2.4E-18 5.2E-23 141.2 8.3 68 27-99 4-73 (153)
45 smart00271 DnaJ DnaJ molecular 99.7 3.1E-18 6.7E-23 118.2 6.9 59 28-86 1-59 (60)
46 COG2214 CbpA DnaJ-class molecu 99.7 4E-18 8.6E-23 142.0 8.2 70 26-95 4-73 (237)
47 TIGR03835 termin_org_DnaJ term 99.7 4.5E-18 9.7E-23 166.6 9.5 71 28-100 2-72 (871)
48 cd06257 DnaJ DnaJ domain or J- 99.7 1.1E-17 2.3E-22 113.4 7.0 55 29-84 1-55 (55)
49 KOG0721|consensus 99.7 3.3E-17 7.2E-22 139.9 7.3 70 28-98 99-168 (230)
50 KOG0550|consensus 99.7 6.7E-17 1.5E-21 149.2 6.7 93 1-93 341-438 (486)
51 PRK01356 hscB co-chaperone Hsc 99.6 1.1E-15 2.4E-20 127.2 7.6 69 27-95 1-73 (166)
52 PRK05014 hscB co-chaperone Hsc 99.6 2.5E-15 5.4E-20 125.7 7.4 66 28-93 1-72 (171)
53 KOG0720|consensus 99.5 6E-15 1.3E-19 137.5 5.9 67 27-95 234-300 (490)
54 PRK03578 hscB co-chaperone Hsc 99.5 3.5E-14 7.5E-19 119.3 7.8 67 27-93 5-77 (176)
55 KOG0722|consensus 99.5 9.7E-15 2.1E-19 127.7 4.1 70 25-96 30-99 (329)
56 PRK09430 djlA Dna-J like membr 99.5 3.5E-14 7.6E-19 126.4 6.8 61 25-85 197-263 (267)
57 PRK00294 hscB co-chaperone Hsc 99.5 5.7E-14 1.2E-18 117.7 7.3 67 27-93 3-75 (173)
58 PTZ00100 DnaJ chaperone protei 99.5 8.9E-14 1.9E-18 109.2 6.5 53 26-83 63-115 (116)
59 PHA02624 large T antigen; Prov 99.4 6.3E-13 1.4E-17 129.0 8.9 61 27-92 10-72 (647)
60 COG5407 SEC63 Preprotein trans 99.3 1.2E-12 2.5E-17 122.2 6.3 74 27-100 97-174 (610)
61 KOG1150|consensus 99.3 5.7E-12 1.2E-16 106.9 6.7 75 15-89 36-114 (250)
62 PRK01773 hscB co-chaperone Hsc 99.3 1.1E-11 2.3E-16 104.0 6.4 67 27-93 1-73 (173)
63 TIGR00714 hscB Fe-S protein as 99.1 1.7E-10 3.7E-15 95.3 6.6 56 40-95 3-62 (157)
64 COG5269 ZUO1 Ribosome-associat 98.9 4.3E-09 9.4E-14 93.3 7.1 67 27-94 42-113 (379)
65 KOG1789|consensus 98.7 3.4E-08 7.3E-13 100.1 6.4 57 24-84 1277-1337(2235)
66 KOG0568|consensus 98.5 1.5E-07 3.2E-12 82.1 5.6 57 27-85 46-103 (342)
67 KOG0723|consensus 98.2 3.8E-06 8.3E-11 64.8 5.4 53 28-85 56-108 (112)
68 COG1076 DjlA DnaJ-domain-conta 97.5 0.00011 2.4E-09 61.4 4.1 55 28-82 113-173 (174)
69 KOG3192|consensus 97.3 0.00044 9.6E-09 57.0 5.6 67 27-93 7-79 (168)
70 KOG0431|consensus 96.8 0.00094 2E-08 63.9 3.3 44 39-82 399-448 (453)
71 COG1076 DjlA DnaJ-domain-conta 96.2 0.0039 8.3E-08 52.2 3.2 66 29-94 2-73 (174)
72 PF03656 Pam16: Pam16; InterP 95.3 0.041 8.8E-07 44.1 5.5 58 25-87 55-112 (127)
73 PF13446 RPT: A repeated domai 95.3 0.049 1.1E-06 37.7 5.2 46 27-77 4-49 (62)
74 PF14687 DUF4460: Domain of un 91.3 0.37 8.1E-06 37.7 4.5 49 38-86 4-55 (112)
75 KOG0724|consensus 89.0 0.41 8.8E-06 43.7 3.5 55 40-94 4-61 (335)
76 PF11833 DUF3353: Protein of u 84.5 2.1 4.5E-05 36.7 5.1 39 37-84 1-39 (194)
77 COG0484 DnaJ DnaJ-class molecu 82.8 0.72 1.6E-05 43.3 1.8 30 2-31 4-33 (371)
78 PRK14292 chaperone protein Dna 64.4 3.8 8.2E-05 38.1 1.6 24 1-24 1-24 (371)
79 KOG0713|consensus 63.6 4.5 9.8E-05 37.4 1.9 22 2-23 16-37 (336)
80 PRK14296 chaperone protein Dna 60.8 5.4 0.00012 37.3 1.9 23 2-24 4-26 (372)
81 COG5552 Uncharacterized conser 59.7 44 0.00095 24.5 6.0 34 29-62 4-37 (88)
82 PTZ00037 DnaJ_C chaperone prot 56.6 11 0.00024 35.9 3.3 24 2-25 28-51 (421)
83 PRK14298 chaperone protein Dna 56.2 6.9 0.00015 36.6 1.8 24 2-25 5-28 (377)
84 PRK14276 chaperone protein Dna 55.3 7.7 0.00017 36.3 2.0 24 2-25 4-27 (380)
85 PRK14291 chaperone protein Dna 55.0 8 0.00017 36.2 2.0 25 2-26 3-27 (382)
86 PRK14287 chaperone protein Dna 54.8 7.2 0.00016 36.4 1.6 24 2-25 4-27 (371)
87 TIGR02349 DnaJ_bact chaperone 54.5 8.2 0.00018 35.6 2.0 23 3-25 1-23 (354)
88 KOG3442|consensus 53.9 18 0.0004 28.9 3.5 38 26-63 57-94 (132)
89 PRK14288 chaperone protein Dna 53.3 17 0.00036 33.9 3.9 25 2-26 3-27 (369)
90 PF07709 SRR: Seven Residue Re 52.9 7.7 0.00017 19.1 0.8 13 71-83 2-14 (14)
91 PRK14300 chaperone protein Dna 52.7 9 0.00019 35.7 1.9 22 2-23 3-24 (372)
92 KOG0721|consensus 52.4 35 0.00076 30.0 5.3 43 2-52 99-152 (230)
93 PF12434 Malate_DH: Malate deh 51.1 17 0.00038 21.4 2.2 17 41-57 9-25 (28)
94 PRK14281 chaperone protein Dna 49.4 13 0.00028 35.1 2.4 23 2-24 3-25 (397)
95 PRK14299 chaperone protein Dna 48.7 10 0.00022 34.1 1.6 25 2-26 4-28 (291)
96 KOG0718|consensus 48.6 26 0.00057 34.1 4.3 21 3-23 10-30 (546)
97 PRK14280 chaperone protein Dna 47.1 13 0.00028 34.7 2.1 24 2-25 4-27 (376)
98 PRK10767 chaperone protein Dna 46.6 12 0.00026 34.8 1.7 24 2-25 4-27 (371)
99 PRK14277 chaperone protein Dna 46.0 13 0.00029 34.8 2.0 24 2-25 5-28 (386)
100 PRK14290 chaperone protein Dna 45.3 13 0.00029 34.5 1.8 26 2-27 3-28 (365)
101 PRK14278 chaperone protein Dna 45.2 7.9 0.00017 36.2 0.3 24 2-25 3-26 (378)
102 PRK14283 chaperone protein Dna 43.5 15 0.00033 34.3 1.9 24 2-25 5-28 (378)
103 PRK14279 chaperone protein Dna 40.6 36 0.00078 32.0 4.0 24 2-25 9-32 (392)
104 PRK14282 chaperone protein Dna 39.8 18 0.00039 33.7 1.8 24 2-25 4-27 (369)
105 PTZ00100 DnaJ chaperone protei 39.6 13 0.00029 29.3 0.7 51 2-53 65-115 (116)
106 PRK10266 curved DNA-binding pr 39.0 23 0.00049 32.1 2.3 25 1-25 3-27 (306)
107 PRK14286 chaperone protein Dna 36.0 35 0.00075 31.9 3.1 23 2-24 4-26 (372)
108 PRK14295 chaperone protein Dna 35.7 35 0.00076 32.1 3.1 25 2-26 9-33 (389)
109 cd00084 HMG-box High Mobility 35.2 86 0.0019 20.5 4.2 42 46-93 12-53 (66)
110 PRK14293 chaperone protein Dna 34.7 25 0.00054 32.8 1.9 22 2-23 3-24 (374)
111 PF10041 DUF2277: Uncharacteri 34.7 1.8E+02 0.004 21.3 6.9 55 30-84 5-61 (78)
112 PRK14297 chaperone protein Dna 34.3 39 0.00084 31.6 3.1 25 2-26 4-28 (380)
113 PF12725 DUF3810: Protein of u 34.3 50 0.0011 30.3 3.7 58 28-85 82-149 (318)
114 COG2879 Uncharacterized small 33.4 72 0.0016 22.6 3.5 18 47-64 26-43 (65)
115 PRK14284 chaperone protein Dna 33.3 62 0.0013 30.4 4.3 22 2-23 1-22 (391)
116 cd01388 SOX-TCF_HMG-box SOX-TC 32.8 86 0.0019 21.7 4.0 41 47-93 14-54 (72)
117 PF00505 HMG_box: HMG (high mo 32.0 1.3E+02 0.0028 20.1 4.8 41 46-92 12-52 (69)
118 PRK14294 chaperone protein Dna 31.6 40 0.00086 31.3 2.7 24 2-25 4-27 (366)
119 cd01390 HMGB-UBF_HMG-box HMGB- 30.9 86 0.0019 20.7 3.7 39 49-93 15-53 (66)
120 cd01389 MATA_HMG-box MATA_HMG- 30.6 98 0.0021 21.7 4.1 41 46-92 13-53 (77)
121 PF12057 DUF3538: Domain of un 30.2 97 0.0021 24.6 4.2 15 27-41 19-33 (120)
122 PRK14285 chaperone protein Dna 29.9 86 0.0019 29.2 4.6 23 2-24 3-25 (365)
123 PF03820 Mtc: Tricarboxylate c 28.9 1.5E+02 0.0032 27.3 5.8 58 31-88 39-121 (308)
124 PF02216 B: B domain; InterPr 27.5 97 0.0021 21.1 3.3 30 29-61 12-41 (54)
125 PRK14301 chaperone protein Dna 26.1 1.1E+02 0.0024 28.6 4.6 22 2-23 4-25 (373)
126 PF07739 TipAS: TipAS antibiot 25.7 1.4E+02 0.003 22.2 4.4 51 35-95 51-103 (118)
127 PF14606 Lipase_GDSL_3: GDSL-l 25.7 45 0.00098 28.2 1.8 59 33-91 64-140 (178)
128 PF04949 Transcrip_act: Transc 25.5 71 0.0015 26.4 2.8 25 66-90 62-86 (159)
129 KOG0527|consensus 24.7 85 0.0018 29.2 3.5 41 47-93 75-115 (331)
130 TIGR03835 termin_org_DnaJ term 24.6 43 0.00093 34.7 1.7 46 2-53 2-55 (871)
131 PRK14289 chaperone protein Dna 24.6 1.2E+02 0.0026 28.3 4.6 22 2-23 5-26 (386)
132 KOG3960|consensus 23.9 58 0.0013 29.2 2.2 15 69-83 127-141 (284)
133 PRK09430 djlA Dna-J like membr 23.7 79 0.0017 28.2 3.1 27 2-28 200-226 (267)
134 PF03912 Psb28: Psb28 protein; 22.5 1.3E+02 0.0029 23.4 3.7 27 204-230 59-85 (108)
135 smart00441 FF Contains two con 22.5 2E+02 0.0043 18.5 4.2 50 44-94 2-52 (55)
136 cd01147 HemV-2 Metal binding p 22.3 2.5E+02 0.0053 23.7 5.8 38 41-84 109-146 (262)
137 smart00398 HMG high mobility g 22.1 2.4E+02 0.0052 18.5 4.7 40 48-93 15-54 (70)
138 PF08447 PAS_3: PAS fold; Int 20.9 30 0.00064 24.0 -0.2 29 28-60 6-35 (91)
139 TIGR03047 PS_II_psb28 photosys 20.7 1.4E+02 0.0031 23.3 3.5 27 204-230 59-85 (109)
140 COG5407 SEC63 Preprotein trans 20.4 1.2E+02 0.0026 29.7 3.7 60 2-61 98-174 (610)
141 COG0089 RplW Ribosomal protein 20.3 66 0.0014 24.5 1.5 21 33-53 25-45 (94)
142 PRK13798 putative OHCU decarbo 20.2 3.4E+02 0.0074 22.5 6.0 10 53-62 67-76 (166)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.9e-32 Score=249.66 Aligned_cols=100 Identities=55% Similarity=0.924 Sum_probs=84.8
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCCCCCCC
Q psy13284 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYEDSRQRG 106 (230)
Q Consensus 27 ~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~~~~~~ 106 (230)
.+|||+||||+++||.+||||||||||+|||||+|+.+ ++|+++||+|+||||||+||+||++||+||.+++.+++.++
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~-~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg 81 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD-KEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGG 81 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCC
Confidence 47999999999999999999999999999999999964 68999999999999999999999999999999987433221
Q ss_pred CcccCCCCCCCCCCCCCCCcCCcccCCHHHHHHHhhCCC
Q psy13284 107 RYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSA 145 (230)
Q Consensus 107 ~~~~~~~~~~~~~~~f~~~~~~f~f~~p~diF~~fFG~~ 145 (230)
.+|+ +|.. ++.|||.+|||+.
T Consensus 82 -------------~g~~----~fgg-~~~DIF~~~FgGg 102 (371)
T COG0484 82 -------------FGFG----GFGG-DFGDIFEDFFGGG 102 (371)
T ss_pred -------------CCcC----CCCC-CHHHHHHHhhcCC
Confidence 0122 2222 7899999999744
No 2
>KOG0713|consensus
Probab=99.95 E-value=4.6e-28 Score=217.78 Aligned_cols=76 Identities=61% Similarity=0.975 Sum_probs=72.5
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCCC
Q psy13284 26 SMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYEDS 102 (230)
Q Consensus 26 ~~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~~ 102 (230)
..+|||+||||+++|+..|||+|||||||||||||||++ +.|.++|++|+.||||||||.+|+.||+||++++...
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd-p~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~ 89 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD-PNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDE 89 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccc
Confidence 458999999999999999999999999999999999998 6899999999999999999999999999999999864
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=2.5e-26 Score=212.39 Aligned_cols=73 Identities=59% Similarity=0.950 Sum_probs=68.4
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
.|||+||||+++||.+|||+|||+||++||||+|+.+ ++|+++|++|++||+||+||+||++||+||++++..
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~-~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~ 75 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD-KEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQ 75 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHHhccHHHHHHHHHhccccccc
Confidence 5999999999999999999999999999999999865 468999999999999999999999999999987753
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=4.6e-26 Score=210.83 Aligned_cols=72 Identities=47% Similarity=0.803 Sum_probs=68.0
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
.|||+||||+++|+.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||+||++||+||++++.+
T Consensus 4 ~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~--~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~ 75 (372)
T PRK14296 4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS--PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDG 75 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcC
Confidence 699999999999999999999999999999999985 478999999999999999999999999999987753
No 5
>KOG0712|consensus
Probab=99.93 E-value=5.7e-26 Score=205.89 Aligned_cols=75 Identities=59% Similarity=0.917 Sum_probs=69.2
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCCCCCC
Q psy13284 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYEDSRQR 105 (230)
Q Consensus 27 ~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~~~~~ 105 (230)
...||+||+|+++||.+|||||||+||++|||||||+ |.++|++|++||||||||+||++||+||+++++.++++
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~ 77 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGG 77 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCC
Confidence 3579999999999999999999999999999999997 66899999999999999999999999999999665443
No 6
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=1.3e-25 Score=207.82 Aligned_cols=103 Identities=47% Similarity=0.800 Sum_probs=81.8
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYEDSRQRGR 107 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~~~~~~~ 107 (230)
.|||+||||+++|+.+|||+|||+||++||||+|+.+ ++|+++|++|++||+||+||++|++||+||++++..+.++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~- 81 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN-KESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGF- 81 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCC-
Confidence 5999999999999999999999999999999999865 47899999999999999999999999999998876421110
Q ss_pred cccCCCCCCCCCCCCCCCcCCcccCCHHHHHHHhhCC
Q psy13284 108 YRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGS 144 (230)
Q Consensus 108 ~~~~~~~~~~~~~~f~~~~~~f~f~~p~diF~~fFG~ 144 (230)
. .+.+.++ .+ .|.+++|||.+|||+
T Consensus 82 --~--------~~~~~~~-~~-~~~~~~d~f~~ffgg 106 (372)
T PRK14286 82 --G--------QGAYTDF-SD-IFGDFGDIFGDFFGG 106 (372)
T ss_pred --C--------CCCcccc-cc-cccchhhHHHHhhCC
Confidence 0 0011110 00 134678999999985
No 7
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=9.1e-25 Score=196.10 Aligned_cols=106 Identities=47% Similarity=0.748 Sum_probs=82.1
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYEDSRQRGR 107 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~~~~~~~ 107 (230)
.|||+||||+++|+.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||++|+.||+||.+++..+..+..
T Consensus 4 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~ 81 (291)
T PRK14299 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPP 81 (291)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCC
Confidence 699999999999999999999999999999999984 578999999999999999999999999999886543211100
Q ss_pred cccCCCCCCCCCCCCCCCcCCcccCCHHHHHHHhhCCC
Q psy13284 108 YRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSA 145 (230)
Q Consensus 108 ~~~~~~~~~~~~~~f~~~~~~f~f~~p~diF~~fFG~~ 145 (230)
.... ...+| .++.+.+++|+|++|||+.
T Consensus 82 -~~~~-----~~~~~----~~~~~~~~~d~f~~~fgg~ 109 (291)
T PRK14299 82 -PGPP-----GGGDF----SGFNVGDFSDFFQQLFGGR 109 (291)
T ss_pred -CCCC-----CCCCc----cccCcCCHHHHHHHHhCCC
Confidence 0000 00111 1233457889999999864
No 8
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=4.3e-25 Score=203.86 Aligned_cols=104 Identities=47% Similarity=0.771 Sum_probs=82.1
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYEDSRQRGR 107 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~~~~~~~ 107 (230)
.|||+||||+++|+.+|||+|||+||++||||+|+.+ ++|+++|++|++||+||+||++|+.||+||++++.++++.+.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-KEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 6999999999999999999999999999999999865 578899999999999999999999999999988753211100
Q ss_pred cccCCCCCCCCCCCCCCCcCCcccCCHHHHHHHhhCC
Q psy13284 108 YRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGS 144 (230)
Q Consensus 108 ~~~~~~~~~~~~~~f~~~~~~f~f~~p~diF~~fFG~ 144 (230)
...+|+++ +..|.+++|+|.+|||+
T Consensus 82 ----------~~~g~~~~--~~~~~~~~d~f~~~fgg 106 (365)
T PRK14285 82 ----------FSGGFSGF--SDIFEDFGDIFDSFFTG 106 (365)
T ss_pred ----------cCCCcccc--ccccccHHHHHHHhhcC
Confidence 00111110 11134678999999985
No 9
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=5.1e-25 Score=204.30 Aligned_cols=72 Identities=51% Similarity=0.847 Sum_probs=68.1
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
.|||+||||+++|+.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||++|++||+||++++.+
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~ 75 (380)
T PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANG 75 (380)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccC
Confidence 599999999999999999999999999999999985 468899999999999999999999999999988764
No 10
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=6.1e-25 Score=203.26 Aligned_cols=72 Identities=51% Similarity=0.848 Sum_probs=67.9
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
.|||+||||+++|+.+|||+|||+||++||||+|++ ++|+++|++|++||+||+||+||++||+||++++.+
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~ 75 (371)
T PRK14287 4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQ 75 (371)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccccc
Confidence 599999999999999999999999999999999985 578899999999999999999999999999987753
No 11
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=1.4e-24 Score=201.87 Aligned_cols=73 Identities=55% Similarity=0.968 Sum_probs=68.8
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
.|||+||||+++|+.+|||+|||+||++||||+|+++ ++|+++|++|++||+||+||++|++||+||++++..
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~ 77 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD-KEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDP 77 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccc
Confidence 6999999999999999999999999999999999865 478999999999999999999999999999988764
No 12
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=1.2e-24 Score=201.91 Aligned_cols=73 Identities=56% Similarity=0.935 Sum_probs=68.8
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
.|||+||||+++|+.+|||+|||+||++||||+|+.+ ++|+++|++|++||+||+||++|++||+||++++..
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~ 76 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN-KEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNG 76 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccc
Confidence 5999999999999999999999999999999999865 478999999999999999999999999999988763
No 13
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=1.5e-24 Score=200.57 Aligned_cols=73 Identities=52% Similarity=0.975 Sum_probs=69.0
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYE 100 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~ 100 (230)
.|||+||||+++|+.+|||+|||+||++||||+|+.+.++|+++|++|++||+||+||++|++||+||.+++.
T Consensus 4 ~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~ 76 (369)
T PRK14282 4 KDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQ 76 (369)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccc
Confidence 6999999999999999999999999999999999876567999999999999999999999999999988765
No 14
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=1.9e-24 Score=200.34 Aligned_cols=73 Identities=59% Similarity=0.965 Sum_probs=68.2
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 27 ~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
..|||+||||+++|+.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||++|++||+||++++..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~ 76 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDN 76 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC--hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccccc
Confidence 3699999999999999999999999999999999985 578899999999999999999999999999987753
No 15
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=2.6e-24 Score=198.72 Aligned_cols=73 Identities=58% Similarity=0.976 Sum_probs=68.7
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
.|||+||||+++|+.+|||+|||+||++||||+|+++ ++|+++|++|++||+||+||.+|++||+||++++.+
T Consensus 4 ~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~ 76 (366)
T PRK14294 4 RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD-KEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSG 76 (366)
T ss_pred CChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccC
Confidence 6999999999999999999999999999999999865 468899999999999999999999999999988753
No 16
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.90 E-value=2.1e-24 Score=202.49 Aligned_cols=69 Identities=59% Similarity=0.912 Sum_probs=64.4
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCC
Q psy13284 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYE 100 (230)
Q Consensus 27 ~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~ 100 (230)
..|||+||||+++||.+|||||||+||++||||||++ +++|++|++||+||+||+||++||+||++++.
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~ 95 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLE 95 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcc
Confidence 3699999999999999999999999999999999963 37999999999999999999999999988765
No 17
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=4.4e-24 Score=197.81 Aligned_cols=72 Identities=60% Similarity=0.928 Sum_probs=68.0
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
.|||+||||+++|+.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||.+|++||+||++++.+
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~ 75 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE--EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQ 75 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhccHhHHHHHHhcCcccccc
Confidence 599999999999999999999999999999999986 468899999999999999999999999999988764
No 18
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=6.3e-24 Score=197.80 Aligned_cols=70 Identities=50% Similarity=0.766 Sum_probs=66.1
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGG 98 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g 98 (230)
.|||+||||+++|+.+|||+|||+||++||||+|+++ +.|+++|++|++||+||+||+||++||+||+++
T Consensus 9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~ 78 (392)
T PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD-PAAEERFKAVSEAHDVLSDPAKRKEYDETRRLF 78 (392)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhc
Confidence 6999999999999999999999999999999999865 578999999999999999999999999999753
No 19
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=4.6e-24 Score=197.84 Aligned_cols=69 Identities=61% Similarity=0.884 Sum_probs=65.5
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGG 98 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g 98 (230)
.|||+||||+++|+.+|||+|||+||++||||+|++ ++|+++|++|++||+||+||++|++||+||++.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~ 71 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPL 71 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHHHHhchhhhhhhhhccCCcc
Confidence 599999999999999999999999999999999985 578999999999999999999999999999763
No 20
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=8.1e-24 Score=195.36 Aligned_cols=100 Identities=54% Similarity=0.933 Sum_probs=82.3
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYEDSRQRGR 107 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~~~~~~~ 107 (230)
.|||+||||+++|+.+|||+|||+||++||||+|+++.++|+++|++|++||+||+|+.+|++||+||+.++.+++++
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~-- 80 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSN-- 80 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCC--
Confidence 599999999999999999999999999999999987766799999999999999999999999999999877531100
Q ss_pred cccCCCCCCCCCCCCCCCcCCcccCCHHHHHHHhhCC
Q psy13284 108 YRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGS 144 (230)
Q Consensus 108 ~~~~~~~~~~~~~~f~~~~~~f~f~~p~diF~~fFG~ 144 (230)
+ ...++. . |.+++|+|..|||+
T Consensus 81 ------~---~~~~~~----~--~~~~~d~f~~~fg~ 102 (365)
T PRK14290 81 ------F---NWDNFT----H--FSDINDIFNQIFGG 102 (365)
T ss_pred ------c---cccccc----c--ccchhHHHHHHhcC
Confidence 0 000111 1 34778999999985
No 21
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=7.9e-24 Score=197.03 Aligned_cols=72 Identities=64% Similarity=1.023 Sum_probs=67.9
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYE 100 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~ 100 (230)
.|||+||||+++|+.+|||+|||+||++||||+|+++ +.|+++|++|++||+||+|++||++||+||++++.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 72 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD-AEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPF 72 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccc
Confidence 4899999999999999999999999999999999875 47899999999999999999999999999998764
No 22
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=1.2e-23 Score=194.45 Aligned_cols=98 Identities=51% Similarity=0.895 Sum_probs=80.6
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCCCCCCC
Q psy13284 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYEDSRQRG 106 (230)
Q Consensus 27 ~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~~~~~~ 106 (230)
|+|||+||||+++|+.+|||+|||+||++||||++++ +.|+++|++|++||+||+||.+|++||+||+++..+. .+
T Consensus 1 ~~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~--~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~-~~- 76 (371)
T PRK14292 1 MMDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGM-PG- 76 (371)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccc-cC-
Confidence 6899999999999999999999999999999999985 5788999999999999999999999999998763210 00
Q ss_pred CcccCCCCCCCCCCCCCCCcCCcccCCHHHHHHHhhCCC
Q psy13284 107 RYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSA 145 (230)
Q Consensus 107 ~~~~~~~~~~~~~~~f~~~~~~f~f~~p~diF~~fFG~~ 145 (230)
+..|+ ++.| +|+|+|..|||+.
T Consensus 77 ------------~~~~~----~~~~-d~~d~f~~~fg~~ 98 (371)
T PRK14292 77 ------------GDPFG----GMGF-DPMDIFEQLFGGA 98 (371)
T ss_pred ------------CcccC----ccCC-ChHHHHHHhhCCC
Confidence 01121 1112 6889999999863
No 23
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=1.2e-23 Score=194.86 Aligned_cols=73 Identities=60% Similarity=0.990 Sum_probs=68.7
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
.|||+||||+++|+.+|||+|||+||++||||+|+.+ ++|+++|++|++||+||+||.+|+.||+||++++.+
T Consensus 4 ~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~ 76 (373)
T PRK14301 4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-PEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNG 76 (373)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC-hHHHHHHHHHHHHHHHhcchhhhhhhhhcccccccc
Confidence 6999999999999999999999999999999999875 468899999999999999999999999999988753
No 24
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=1.5e-23 Score=194.65 Aligned_cols=100 Identities=45% Similarity=0.811 Sum_probs=80.4
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYEDSRQRGR 107 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~~~~~~~ 107 (230)
.|||+||||+++|+.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||.+|++||+||++++..+.+...
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 80 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQ 80 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccc
Confidence 599999999999999999999999999999999986 578899999999999999999999999999987754221100
Q ss_pred cccCCCCCCCCCCCCCCCcCCcccCCHHHHHHHhhC
Q psy13284 108 YRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFG 143 (230)
Q Consensus 108 ~~~~~~~~~~~~~~f~~~~~~f~f~~p~diF~~fFG 143 (230)
. ...|+ .+.+.+++|+|++||+
T Consensus 81 --~--------~~~~~----~~~~~~~~d~f~~~f~ 102 (382)
T PRK14291 81 --G--------QEGFS----DFGGGNIEDILEDVFD 102 (382)
T ss_pred --c--------ccccc----cccCCCHHHHHHHHHH
Confidence 0 01121 1223577899999964
No 25
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=2.3e-23 Score=193.82 Aligned_cols=73 Identities=60% Similarity=1.011 Sum_probs=68.3
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhh----cCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDD----RGKGGYED 101 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~----~g~~g~~~ 101 (230)
.|||+||||+++|+.+|||+|||+||++||||+|+.+ ++|+++|++|++||+||+||++|++||+ ||++++..
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~ 85 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-AKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRP 85 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccccc
Confidence 4999999999999999999999999999999999865 4689999999999999999999999999 99888753
No 26
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.89 E-value=3.8e-23 Score=189.96 Aligned_cols=101 Identities=54% Similarity=0.896 Sum_probs=79.8
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCCCCCCCCc
Q psy13284 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYEDSRQRGRY 108 (230)
Q Consensus 29 dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~~~~~~~~ 108 (230)
|||+||||+++|+.+|||+|||+||++||||+|+. +.|+++|++|++||+||+|+.+|.+||+||++++.++....
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~-- 76 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGG-- 76 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCC--
Confidence 79999999999999999999999999999999983 56889999999999999999999999999998875421110
Q ss_pred ccCCCCCCCCCCCCCCCcCCcccCCHHHHHHHhhCC
Q psy13284 109 RSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGS 144 (230)
Q Consensus 109 ~~~~~~~~~~~~~f~~~~~~f~f~~p~diF~~fFG~ 144 (230)
+.++..+ ....|.++.++|.+|||+
T Consensus 77 ----------~~~~~~~-~~~~~~~~~~~f~~~fg~ 101 (354)
T TIGR02349 77 ----------GGGFNGF-DIGFFGDFGDIFGDFFGG 101 (354)
T ss_pred ----------CCCcCCc-cccCcCchhhhHHHHhcc
Confidence 0011100 000134678999999985
No 27
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=5.8e-23 Score=189.95 Aligned_cols=73 Identities=60% Similarity=1.023 Sum_probs=68.4
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
.|||+||||+++|+.+|||+|||+||++||||+|+.+ +.|+++|++|++||+||+|+.+|+.||+||++++..
T Consensus 4 ~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~ 76 (371)
T PRK10767 4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-KEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQ 76 (371)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-HHHHHHHHHHHHHHHHhcchhhhhHhhhcccccccc
Confidence 6999999999999999999999999999999999865 468899999999999999999999999999987753
No 28
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=2.3e-23 Score=193.16 Aligned_cols=71 Identities=58% Similarity=0.943 Sum_probs=67.7
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYE 100 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~ 100 (230)
.|||+||||+++|+.+|||+|||+||++||||+|++ +.|+++|++|++||+||+|+.+|++||+||++++.
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~ 75 (378)
T PRK14283 5 RDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMD 75 (378)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccc
Confidence 599999999999999999999999999999999985 57899999999999999999999999999998775
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=5.4e-23 Score=191.79 Aligned_cols=73 Identities=62% Similarity=1.024 Sum_probs=68.5
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
.|||+||||+++|+.+|||+|||+||++||||+|+.+ ++|+++|++|++||+||+|+.+|+.||+||++++.+
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~ 75 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN-KEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGS 75 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhcc
Confidence 5999999999999999999999999999999999865 468899999999999999999999999999988753
No 30
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.87 E-value=4.6e-22 Score=179.72 Aligned_cols=69 Identities=45% Similarity=0.783 Sum_probs=65.1
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCC
Q psy13284 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKG 97 (230)
Q Consensus 27 ~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~ 97 (230)
+.|||+||||+++|+.+|||+|||+||++||||+|++ +.|+++|++|++||+||+|+.+|+.||+||..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~--~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~ 71 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE--PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQH 71 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 5799999999999999999999999999999999875 47899999999999999999999999999864
No 31
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=4.8e-22 Score=184.03 Aligned_cols=72 Identities=51% Similarity=0.886 Sum_probs=67.5
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
.|||+||||+++|+.+|||+|||+||++||||+++. +.|+++|++|++||+||+|+.+|+.||+||++++..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~ 74 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA--KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQN 74 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccccc
Confidence 699999999999999999999999999999999984 468899999999999999999999999999988753
No 32
>KOG0691|consensus
Probab=99.86 E-value=5.2e-22 Score=178.05 Aligned_cols=90 Identities=51% Similarity=0.826 Sum_probs=80.5
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCCCCCCC
Q psy13284 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYEDSRQRG 106 (230)
Q Consensus 27 ~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~~~~~~ 106 (230)
..|||+||||..+|+..+||||||++||+|||||||+++. |.++|+.|.+||+||+|+.+|+.||.+|..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~-A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~---- 78 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQ-AAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ---- 78 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch----
Confidence 4799999999999999999999999999999999999965 99999999999999999999999999998775431
Q ss_pred CcccCCCCCCCCCCCCCCCcCCcccCCHHHHHHHhhCC
Q psy13284 107 RYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGS 144 (230)
Q Consensus 107 ~~~~~~~~~~~~~~~f~~~~~~f~f~~p~diF~~fFG~ 144 (230)
.+.++.++|++-||+
T Consensus 79 -----------------------~~~d~~~~~r~~f~~ 93 (296)
T KOG0691|consen 79 -----------------------GREDQADGFRKKFGS 93 (296)
T ss_pred -----------------------hhhhHHHHHHHHhhh
Confidence 124788999999984
No 33
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=8e-22 Score=182.62 Aligned_cols=71 Identities=48% Similarity=0.874 Sum_probs=67.2
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYE 100 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~ 100 (230)
.|||+||||+++|+.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||.+|++||+||++++.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~ 73 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVS 73 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHHHHHHHhchHHHHHHhhccccccc
Confidence 699999999999999999999999999999999986 46889999999999999999999999999988765
No 34
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.7e-21 Score=181.07 Aligned_cols=73 Identities=56% Similarity=0.924 Sum_probs=68.5
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
.|||+||||+++|+.+|||+|||+||++||||+|+.+ ++|+++|++|++||+||+||++|++||+||++++.+
T Consensus 5 ~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~ 77 (386)
T PRK14289 5 RDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD-KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGG 77 (386)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-hHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccccc
Confidence 5999999999999999999999999999999999865 468999999999999999999999999999987753
No 35
>KOG0716|consensus
Probab=99.85 E-value=4.6e-22 Score=174.43 Aligned_cols=73 Identities=59% Similarity=0.931 Sum_probs=69.5
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
.|+|+||||+++|+.++||||||+||++||||+++++ +++..+|++||+||+||+||.+|.+||+||+.++.-
T Consensus 31 ~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~-P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l 103 (279)
T KOG0716|consen 31 LDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN-PEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL 103 (279)
T ss_pred hHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC-chhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence 6999999999999999999999999999999999998 678999999999999999999999999999888753
No 36
>KOG0717|consensus
Probab=99.85 E-value=6.8e-22 Score=183.48 Aligned_cols=78 Identities=46% Similarity=0.740 Sum_probs=72.6
Q ss_pred ccCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 24 HSSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 24 ~~~~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
+..|++||+||||.++|++.+||++||+|||+|||||||+..++|+++|+.|+.||+|||||+.|+.||.+.+.-|.+
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~ 81 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRG 81 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcC
Confidence 456899999999999999999999999999999999999999999999999999999999999999999987655543
No 37
>KOG0718|consensus
Probab=99.85 E-value=2.2e-21 Score=180.27 Aligned_cols=75 Identities=45% Similarity=0.825 Sum_probs=70.3
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCC--CCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKN--PDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 27 ~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn--~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
..|||.+|+|+++||.+|||+||||+++.+||||. |+.++.|+++|+.|.+|||||+||++|++||.||++|++-
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t 84 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKT 84 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccc
Confidence 35999999999999999999999999999999996 4557889999999999999999999999999999999973
No 38
>KOG0715|consensus
Probab=99.84 E-value=2.2e-21 Score=174.07 Aligned_cols=69 Identities=62% Similarity=0.930 Sum_probs=66.0
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGG 98 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g 98 (230)
.|||+||||+++|+..|||+||++||++||||.|++. .|+++|++|.+|||||+|++||+.||+++..+
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~--~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK--EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc--chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 4999999999999999999999999999999999984 89999999999999999999999999998765
No 39
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.83 E-value=5.6e-21 Score=190.32 Aligned_cols=71 Identities=37% Similarity=0.644 Sum_probs=66.8
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYE 100 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~ 100 (230)
.+||+||||+++|+..+||+|||+||++||||+|+.+ .|.++|++|++||+||+||.+|+.||++|..|+.
T Consensus 573 ~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~--~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 573 TLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN--EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 6999999999999999999999999999999999874 5778999999999999999999999999987754
No 40
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.82 E-value=4.1e-20 Score=129.63 Aligned_cols=64 Identities=50% Similarity=0.902 Sum_probs=60.8
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy13284 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYD 92 (230)
Q Consensus 29 dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD 92 (230)
|||+||||+++++.++||++|++|++++|||+++.....+++.|+.|++||++|++|.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6999999999999999999999999999999988765578999999999999999999999998
No 41
>KOG0714|consensus
Probab=99.81 E-value=6.2e-20 Score=160.01 Aligned_cols=112 Identities=53% Similarity=0.840 Sum_probs=90.5
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCCCCCCCC
Q psy13284 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYEDSRQRG 106 (230)
Q Consensus 27 ~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~~~~~~~ 106 (230)
+.|||+||+|.+.|+.++||+||++||++||||+|+.++..|+++|++|++||+||+|+.+|.+||++|++++.+.....
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~ 81 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS 81 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence 47999999999999999999999999999999999887556777999999999999999999999999997766521110
Q ss_pred CcccCCCCCCCCCCCCCCCcCCcccCCHHHHHHHhhCCCCCCCCc
Q psy13284 107 RYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSASPFNDI 151 (230)
Q Consensus 107 ~~~~~~~~~~~~~~~f~~~~~~f~f~~p~diF~~fFG~~~pf~~~ 151 (230)
.. ...+ ...+.+.+|.++|.+|||..+|+...
T Consensus 82 ~~---------~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~ 113 (306)
T KOG0714|consen 82 SS---------FTSE----LFYFLFRKPDKDFYEFFGVSSPFSGS 113 (306)
T ss_pred CC---------CCCC----cceeccCchhhhHHHHhCCCCCCccc
Confidence 00 0001 11355679999999999999888743
No 42
>KOG0624|consensus
Probab=99.81 E-value=5.9e-20 Score=166.71 Aligned_cols=100 Identities=44% Similarity=0.736 Sum_probs=79.5
Q ss_pred CccHHHHhccCCCC--Chh---hhhhhh-ccCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHH
Q psy13284 1 MLDYYKVLGVDKQS--STG---DIKKAS-HSSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDN--QSEANKKF 72 (230)
Q Consensus 1 ~~d~~~i~~~~~~~--~~~---~~~~~~-~~~~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~--~~~a~~~F 72 (230)
|.||+..+.++..- +.+ ..+|.. ....+|||+||||.++|+..||-|||||||.+||||.-.++ +..|+++|
T Consensus 361 I~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKF 440 (504)
T KOG0624|consen 361 IHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKF 440 (504)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhh
Confidence 45788877654433 222 223333 23458999999999999999999999999999999986543 45799999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhcCCCCCCC
Q psy13284 73 KEISEAYEVLSDEKKRRIYDDRGKGGYED 101 (230)
Q Consensus 73 ~~I~eAYevLsd~~kR~~YD~~g~~g~~~ 101 (230)
..|..|-|||+||+||+.+|. |++.+..
T Consensus 441 IDIAAAKEVLsd~EkRrqFDn-GeDPLD~ 468 (504)
T KOG0624|consen 441 IDIAAAKEVLSDPEKRRQFDN-GEDPLDP 468 (504)
T ss_pred hhHHHHHHhhcCHHHHhhccC-CCCCCCh
Confidence 999999999999999999997 6777654
No 43
>KOG0719|consensus
Probab=99.78 E-value=2.9e-19 Score=153.92 Aligned_cols=70 Identities=49% Similarity=0.893 Sum_probs=64.8
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDN-QSEANKKFKEISEAYEVLSDEKKRRIYDDRGKG 97 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~-~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~ 97 (230)
.|+|+||||.++|+..+|++||++|||+||||++++. ..+|+++|++|+.||+||+|.++|++||+.|.-
T Consensus 14 ~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 14 KDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred cCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 5999999999999999999999999999999998643 458999999999999999999999999998754
No 44
>PHA03102 Small T antigen; Reviewed
Probab=99.75 E-value=2.4e-18 Score=141.21 Aligned_cols=68 Identities=25% Similarity=0.408 Sum_probs=62.2
Q ss_pred ccchhhhhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCC
Q psy13284 27 MLDYYKVLGVDKQS--STGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGY 99 (230)
Q Consensus 27 ~~dyY~iLgv~~~a--s~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~ 99 (230)
...+|+||||+++| |.++||+|||+||+++||||+++ +++|++|++||++|+|+.+|..||.+|++..
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~-----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~ 73 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD-----EEKMKELNTLYKKFRESVKSLRDLDGEEDSS 73 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch-----hHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence 46799999999999 99999999999999999999864 3589999999999999999999999987653
No 45
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.75 E-value=3.1e-18 Score=118.21 Aligned_cols=59 Identities=66% Similarity=1.075 Sum_probs=54.8
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhh
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEK 86 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~ 86 (230)
.|||+||||+++++.++||+||++|++++|||+++...+.+++.|++|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999998644678999999999999999985
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4e-18 Score=142.00 Aligned_cols=70 Identities=59% Similarity=0.989 Sum_probs=65.4
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcC
Q psy13284 26 SMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRG 95 (230)
Q Consensus 26 ~~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g 95 (230)
.+.|||+||||+++|+.+|||+|||+||++||||+++.+...|+++|+.|++||+||+|+.+|..||+.+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 4689999999999999999999999999999999999864358999999999999999999999999984
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.74 E-value=4.5e-18 Score=166.56 Aligned_cols=71 Identities=51% Similarity=0.847 Sum_probs=66.3
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYE 100 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~ 100 (230)
.|||+||||+++|+.++||+|||+|+++||||+++. +.++++|++|++||++|+||.+|+.||+||..+..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~--~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA--PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 599999999999999999999999999999999986 57888999999999999999999999999876643
No 48
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.73 E-value=1.1e-17 Score=113.43 Aligned_cols=55 Identities=73% Similarity=1.155 Sum_probs=51.8
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhh
Q psy13284 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSD 84 (230)
Q Consensus 29 dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd 84 (230)
|||+||||+++++.++||++||+|+++||||+++.. +.+++.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999999999999864 5788999999999999986
No 49
>KOG0721|consensus
Probab=99.69 E-value=3.3e-17 Score=139.93 Aligned_cols=70 Identities=40% Similarity=0.771 Sum_probs=65.4
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGG 98 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g 98 (230)
-|+||||||++.|+..|||||||+|.+|+||||+|.. ++.++.|..|+.||+.|+|++.|+.|..||...
T Consensus 99 fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~-~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 99 FDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE-EGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred CCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc-chhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 5999999999999999999999999999999999875 577889999999999999999999999998654
No 50
>KOG0550|consensus
Probab=99.67 E-value=6.7e-17 Score=149.25 Aligned_cols=93 Identities=46% Similarity=0.722 Sum_probs=76.9
Q ss_pred CccHHHHhccCCCC----Chhhhhhhhc-cCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHH
Q psy13284 1 MLDYYKVLGVDKQS----STGDIKKASH-SSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEI 75 (230)
Q Consensus 1 ~~d~~~i~~~~~~~----~~~~~~~~~~-~~~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I 75 (230)
|.||++.+..+..- .+.+...+.. +...|||.||||.++|+..|||||||++||.||||++..++.++|.+|++|
T Consensus 341 V~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkev 420 (486)
T KOG0550|consen 341 VEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEV 420 (486)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHH
Confidence 35777777654442 2222333333 334799999999999999999999999999999999998888999999999
Q ss_pred HHHHHhhhhhhhhhhhhh
Q psy13284 76 SEAYEVLSDEKKRRIYDD 93 (230)
Q Consensus 76 ~eAYevLsd~~kR~~YD~ 93 (230)
.+||.+|+||.+|..||.
T Consensus 421 geAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 421 GEAYTILSDPMKRVRFDS 438 (486)
T ss_pred HHHHHHhcCHHHHhhccc
Confidence 999999999999999996
No 51
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.61 E-value=1.1e-15 Score=127.24 Aligned_cols=69 Identities=28% Similarity=0.420 Sum_probs=60.0
Q ss_pred ccchhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHHhhhhhhhhhhhhhcC
Q psy13284 27 MLDYYKVLGVDKQ--SSTGDIKKAYRKLALKWHPDKNPDN--QSEANKKFKEISEAYEVLSDEKKRRIYDDRG 95 (230)
Q Consensus 27 ~~dyY~iLgv~~~--as~~eIKkaYrklalk~HPDkn~~~--~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g 95 (230)
|.|||+||||++. ++..+|+++||+|+++||||++... ++.+.+.+..|++||++|+||.+|+.|+..-
T Consensus 1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 6799999999996 7899999999999999999998643 2234567899999999999999999998643
No 52
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.59 E-value=2.5e-15 Score=125.69 Aligned_cols=66 Identities=27% Similarity=0.465 Sum_probs=58.5
Q ss_pred cchhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc----hHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy13284 28 LDYYKVLGVDKQ--SSTGDIKKAYRKLALKWHPDKNPDN----QSEANKKFKEISEAYEVLSDEKKRRIYDD 93 (230)
Q Consensus 28 ~dyY~iLgv~~~--as~~eIKkaYrklalk~HPDkn~~~----~~~a~~~F~~I~eAYevLsd~~kR~~YD~ 93 (230)
.|||+||||++. ++..+||++||+|+++||||+.... +..|.++++.|++||++|+||.+|+.|+-
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 489999999995 7889999999999999999996543 22467899999999999999999999985
No 53
>KOG0720|consensus
Probab=99.54 E-value=6e-15 Score=137.49 Aligned_cols=67 Identities=43% Similarity=0.647 Sum_probs=63.6
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcC
Q psy13284 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRG 95 (230)
Q Consensus 27 ~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g 95 (230)
-+|.|.+|||+.++++++|||.|||||...|||||.. +.|+|.||.|+.|||||+|+.+|..||.-.
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~--~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI--PRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC--hhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 5899999999999999999999999999999999984 689999999999999999999999999753
No 54
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.51 E-value=3.5e-14 Score=119.32 Aligned_cols=67 Identities=25% Similarity=0.338 Sum_probs=57.9
Q ss_pred ccchhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy13284 27 MLDYYKVLGVDKQ--SSTGDIKKAYRKLALKWHPDKNPDNQ----SEANKKFKEISEAYEVLSDEKKRRIYDD 93 (230)
Q Consensus 27 ~~dyY~iLgv~~~--as~~eIKkaYrklalk~HPDkn~~~~----~~a~~~F~~I~eAYevLsd~~kR~~YD~ 93 (230)
..|||+||||++. ++..+|+++||+|+++||||+++... ..+.+.+..|++||++|+||.+|+.|..
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 3799999999995 68999999999999999999976432 2245567999999999999999999985
No 55
>KOG0722|consensus
Probab=99.51 E-value=9.7e-15 Score=127.66 Aligned_cols=70 Identities=41% Similarity=0.695 Sum_probs=63.9
Q ss_pred cCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCC
Q psy13284 25 SSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGK 96 (230)
Q Consensus 25 ~~~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~ 96 (230)
+-..|.|+||||.+.|+..||+||||+||+++|||++++ +++.+.|+.|.+||++|.|.+.|..||-+-+
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~--~e~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD--PESKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC--chhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 445899999999999999999999999999999999987 4566899999999999999999999997543
No 56
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.49 E-value=3.5e-14 Score=126.38 Aligned_cols=61 Identities=41% Similarity=0.622 Sum_probs=53.8
Q ss_pred cCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------chHHHHHHHHHHHHHHHhhhhh
Q psy13284 25 SSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPD------NQSEANKKFKEISEAYEVLSDE 85 (230)
Q Consensus 25 ~~~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~------~~~~a~~~F~~I~eAYevLsd~ 85 (230)
.+..|+|+||||+++||.+|||+|||+|+++||||++.. ..+.|+++|++|++||++|+..
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999999532 2356899999999999999864
No 57
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.49 E-value=5.7e-14 Score=117.71 Aligned_cols=67 Identities=24% Similarity=0.343 Sum_probs=59.4
Q ss_pred ccchhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc----hHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy13284 27 MLDYYKVLGVDKQ--SSTGDIKKAYRKLALKWHPDKNPDN----QSEANKKFKEISEAYEVLSDEKKRRIYDD 93 (230)
Q Consensus 27 ~~dyY~iLgv~~~--as~~eIKkaYrklalk~HPDkn~~~----~~~a~~~F~~I~eAYevLsd~~kR~~YD~ 93 (230)
-.+||++|||++. .+..+|+++||+|+++||||++... +..+.+++..|++||++|+||.+|+.|+-
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 3699999999996 6789999999999999999997543 23467889999999999999999999995
No 58
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.47 E-value=8.9e-14 Score=109.16 Aligned_cols=53 Identities=28% Similarity=0.439 Sum_probs=47.3
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhh
Q psy13284 26 SMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLS 83 (230)
Q Consensus 26 ~~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLs 83 (230)
+..++|+||||+++|+.+|||++||+|++++|||++.. .+.|++|++||++|.
T Consensus 63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs-----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS-----TYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHh
Confidence 34699999999999999999999999999999999643 357889999999995
No 59
>PHA02624 large T antigen; Provisional
Probab=99.40 E-value=6.3e-13 Score=129.00 Aligned_cols=61 Identities=25% Similarity=0.416 Sum_probs=56.5
Q ss_pred ccchhhhhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy13284 27 MLDYYKVLGVDKQS--STGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYD 92 (230)
Q Consensus 27 ~~dyY~iLgv~~~a--s~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD 92 (230)
..++|+||||+++| +.++||+|||+||++||||++.+ +++|++|++||++|+|+.+|..|.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd-----eekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD-----EEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc-----HHHHHHHHHHHHHHhcHHHhhhcc
Confidence 46999999999999 99999999999999999999753 468999999999999999999984
No 60
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.34 E-value=1.2e-12 Score=122.23 Aligned_cols=74 Identities=43% Similarity=0.739 Sum_probs=67.4
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCC
Q psy13284 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPD----NQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYE 100 (230)
Q Consensus 27 ~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~----~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g~~g~~ 100 (230)
.-|+||||||..+++..+||++||+|..|+||||.+. .+++.|++.++|++||+.|+|...|+.|-.||.-...
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p 174 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP 174 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence 4699999999999999999999999999999999654 4678899999999999999999999999999976544
No 61
>KOG1150|consensus
Probab=99.29 E-value=5.7e-12 Score=106.94 Aligned_cols=75 Identities=39% Similarity=0.667 Sum_probs=65.7
Q ss_pred ChhhhhhhhccC----ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhh
Q psy13284 15 STGDIKKASHSS----MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRR 89 (230)
Q Consensus 15 ~~~~~~~~~~~~----~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~ 89 (230)
+...|.|..... ..++|+||.|.|..+.++||+.||+|++..||||||++.+.|..+|--|..||..|-|+.-|.
T Consensus 36 s~~qIeRllrpgstyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rk 114 (250)
T KOG1150|consen 36 SKQQIERLLRPGSTYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRK 114 (250)
T ss_pred cHHHHHHHhcCCccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 445566665432 379999999999999999999999999999999999999999999999999999999987443
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.25 E-value=1.1e-11 Score=104.04 Aligned_cols=67 Identities=21% Similarity=0.243 Sum_probs=58.9
Q ss_pred ccchhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc----hHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy13284 27 MLDYYKVLGVDKQ--SSTGDIKKAYRKLALKWHPDKNPDN----QSEANKKFKEISEAYEVLSDEKKRRIYDD 93 (230)
Q Consensus 27 ~~dyY~iLgv~~~--as~~eIKkaYrklalk~HPDkn~~~----~~~a~~~F~~I~eAYevLsd~~kR~~YD~ 93 (230)
|.|||++|||++. .+..++++.|++|.+++|||+.... +..|.+.-..||+||.+|+||-+|+.|=-
T Consensus 1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 6899999999995 8999999999999999999985332 34567788999999999999999999964
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.10 E-value=1.7e-10 Score=95.30 Aligned_cols=56 Identities=27% Similarity=0.341 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc----hHHHHHHHHHHHHHHHhhhhhhhhhhhhhcC
Q psy13284 40 SSTGDIKKAYRKLALKWHPDKNPDN----QSEANKKFKEISEAYEVLSDEKKRRIYDDRG 95 (230)
Q Consensus 40 as~~eIKkaYrklalk~HPDkn~~~----~~~a~~~F~~I~eAYevLsd~~kR~~YD~~g 95 (230)
.+..+|+++||+|+++||||+.+.. +..+.+.+..|++||++|+||.+|+.|+-.-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l 62 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL 62 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 4678999999999999999985432 3357889999999999999999999999743
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4.3e-09 Score=93.27 Aligned_cols=67 Identities=40% Similarity=0.588 Sum_probs=58.6
Q ss_pred ccchhhhhCCCC---CCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q psy13284 27 MLDYYKVLGVDK---QSSTGDIKKAYRKLALKWHPDKNP--DNQSEANKKFKEISEAYEVLSDEKKRRIYDDR 94 (230)
Q Consensus 27 ~~dyY~iLgv~~---~as~~eIKkaYrklalk~HPDkn~--~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~ 94 (230)
..|.|.+|||+. .|++.+|.+|.++.+.+||||+.. .+ ....+.|+.|+.||+||+|+.+|..||.-
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~-~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGN-KGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCC-CCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 489999999997 789999999999999999999951 22 24567899999999999999999999963
No 65
>KOG1789|consensus
Probab=98.66 E-value=3.4e-08 Score=100.11 Aligned_cols=57 Identities=39% Similarity=0.649 Sum_probs=48.2
Q ss_pred ccCccchhhhhCCCC----CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhh
Q psy13284 24 HSSMLDYYKVLGVDK----QSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSD 84 (230)
Q Consensus 24 ~~~~~dyY~iLgv~~----~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd 84 (230)
..+..+.|+||.|+- ....+.||++|+|||.+|||||||+ ..++|..+++|||.|+.
T Consensus 1277 ~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE----GRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1277 TMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE----GREMFERVNKAYELLSS 1337 (2235)
T ss_pred ccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch----HHHHHHHHHHHHHHHHH
Confidence 334468999999985 3455899999999999999999985 45799999999999983
No 66
>KOG0568|consensus
Probab=98.51 E-value=1.5e-07 Score=82.05 Aligned_cols=57 Identities=26% Similarity=0.684 Sum_probs=50.8
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHH-hhhhh
Q psy13284 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYE-VLSDE 85 (230)
Q Consensus 27 ~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYe-vLsd~ 85 (230)
.+.||.||||...|+.++++.||.+||+++|||...+ ++..++|.+|.+||. ||+..
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~--~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE--EADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc--cccHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999876 345578999999999 88743
No 67
>KOG0723|consensus
Probab=98.16 E-value=3.8e-06 Score=64.83 Aligned_cols=53 Identities=28% Similarity=0.379 Sum_probs=44.8
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhh
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDE 85 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~ 85 (230)
+..-.||||.++++.+.||+|.||+++..|||+....- .-.+|+||+++|...
T Consensus 56 ~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPY-----lAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 56 REAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPY-----LASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHH-----HHHHHHHHHHHHhcc
Confidence 45556999999999999999999999999999987643 223699999999754
No 68
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00011 Score=61.44 Aligned_cols=55 Identities=45% Similarity=0.635 Sum_probs=47.4
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CchHHHHHHHHHHHHHHHhh
Q psy13284 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNP------DNQSEANKKFKEISEAYEVL 82 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~------~~~~~a~~~F~~I~eAYevL 82 (230)
.|.|.+|++...+...+|+++|+++....|||+-. .--+.+++++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 69999999999999999999999999999999821 11246888999999999854
No 69
>KOG3192|consensus
Probab=97.34 E-value=0.00044 Score=57.00 Aligned_cols=67 Identities=22% Similarity=0.471 Sum_probs=53.8
Q ss_pred ccchhhhhCCCC--CCCHHHHHHHHHHHHHHhCCCCCC----CchHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy13284 27 MLDYYKVLGVDK--QSSTGDIKKAYRKLALKWHPDKNP----DNQSEANKKFKEISEAYEVLSDEKKRRIYDD 93 (230)
Q Consensus 27 ~~dyY~iLgv~~--~as~~eIKkaYrklalk~HPDkn~----~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~ 93 (230)
.++||.++|... ...+..++..|.-..+++|||+.. .+...|.+.-.+|++||..|.||-+|+.|=-
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 368999997654 567777777899999999999821 2223677889999999999999999999953
No 70
>KOG0431|consensus
Probab=96.81 E-value=0.00094 Score=63.92 Aligned_cols=44 Identities=39% Similarity=0.539 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHHhh
Q psy13284 39 QSSTGDIKKAYRKLALKWHPDKNPDN------QSEANKKFKEISEAYEVL 82 (230)
Q Consensus 39 ~as~~eIKkaYrklalk~HPDkn~~~------~~~a~~~F~~I~eAYevL 82 (230)
-.+.++|||||||..|..||||-+.. +--|++.|-.+++||+..
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 45999999999999999999996543 223666677777776643
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0039 Score=52.18 Aligned_cols=66 Identities=26% Similarity=0.398 Sum_probs=49.7
Q ss_pred chhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q psy13284 29 DYYKVLGVDKQ--SSTGDIKKAYRKLALKWHPDKNPDNQ----SEANKKFKEISEAYEVLSDEKKRRIYDDR 94 (230)
Q Consensus 29 dyY~iLgv~~~--as~~eIKkaYrklalk~HPDkn~~~~----~~a~~~F~~I~eAYevLsd~~kR~~YD~~ 94 (230)
||..+.+.++. ...+.++..|+.+++++|||+..... ..+-+.+..++.||.+|.+|-+|..|=--
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la 73 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA 73 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34445555553 24567889999999999999964432 23556899999999999999999999653
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.34 E-value=0.041 Score=44.11 Aligned_cols=58 Identities=24% Similarity=0.261 Sum_probs=40.1
Q ss_pred cCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhh
Q psy13284 25 SSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKK 87 (230)
Q Consensus 25 ~~~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~k 87 (230)
.++.....||+|++.++.++|.+.|.+|-...+|++...-- .=.+|..|.|.|..+-+
T Consensus 55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfY-----LQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFY-----LQSKVFRAKERLEQELK 112 (127)
T ss_dssp --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HH-----HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHH-----HHHHHHHHHHHHHHHHH
Confidence 44568999999999999999999999999999999876521 12357788888875543
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=95.30 E-value=0.049 Score=37.70 Aligned_cols=46 Identities=20% Similarity=0.439 Sum_probs=33.0
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHH
Q psy13284 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISE 77 (230)
Q Consensus 27 ~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~e 77 (230)
..+.|++|||+++++.+.|-.+|+.... .+|.+...+.+.++.|.+
T Consensus 4 ~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-----~~P~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 4 VEEAYEILGIDEDTDDDFIISAFQSKVN-----DDPSQKDTLREALRVIAE 49 (62)
T ss_pred HHHHHHHhCcCCCCCHHHHHHHHHHHHH-----cChHhHHHHHHHHHHHHH
Confidence 4578999999999999999999999876 344433444444444443
No 74
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=91.31 E-value=0.37 Score=37.71 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCC---CCCchHHHHHHHHHHHHHHHhhhhhh
Q psy13284 38 KQSSTGDIKKAYRKLALKWHPDK---NPDNQSEANKKFKEISEAYEVLSDEK 86 (230)
Q Consensus 38 ~~as~~eIKkaYrklalk~HPDk---n~~~~~~a~~~F~~I~eAYevLsd~~ 86 (230)
+..+..+++.|.|...++.|||. +|+.++.-++-++.++.-.+.|..+.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 45677899999999999999996 55555556677888888888777643
No 75
>KOG0724|consensus
Probab=88.97 E-value=0.41 Score=43.67 Aligned_cols=55 Identities=35% Similarity=0.544 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q psy13284 40 SSTGDIKKAYRKLALKWHPDKNPD---NQSEANKKFKEISEAYEVLSDEKKRRIYDDR 94 (230)
Q Consensus 40 as~~eIKkaYrklalk~HPDkn~~---~~~~a~~~F~~I~eAYevLsd~~kR~~YD~~ 94 (230)
++..+|..+|++.++..||++-.. -....++.++.|.+||.||.+..+|...|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 577899999999999999998641 1124567899999999999986665566554
No 76
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=84.46 E-value=2.1 Score=36.67 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhh
Q psy13284 37 DKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSD 84 (230)
Q Consensus 37 ~~~as~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd 84 (230)
+++|+.|||++|+.+|..+|--| ++.-.+|-.||+.|.=
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd---------~~~~~~IEaAYD~ILM 39 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD---------EKSREAIEAAYDAILM 39 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHH
Confidence 47899999999999999998322 1234568999996543
No 77
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=82.84 E-value=0.72 Score=43.28 Aligned_cols=30 Identities=43% Similarity=0.655 Sum_probs=24.5
Q ss_pred ccHHHHhccCCCCChhhhhhhhccCccchh
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHSSMLDYY 31 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~~~~dyY 31 (230)
.|||+||+|++.++.++|+++-....+.|.
T Consensus 4 ~dyYeiLGV~k~As~~EIKkAYRkLA~kyH 33 (371)
T COG0484 4 RDYYEILGVSKDASEEEIKKAYRKLAKKYH 33 (371)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 599999999999999999997655544443
No 78
>PRK14292 chaperone protein DnaJ; Provisional
Probab=64.35 E-value=3.8 Score=38.14 Aligned_cols=24 Identities=46% Similarity=0.870 Sum_probs=20.5
Q ss_pred CccHHHHhccCCCCChhhhhhhhc
Q psy13284 1 MLDYYKVLGVDKQSSTGDIKKASH 24 (230)
Q Consensus 1 ~~d~~~i~~~~~~~~~~~~~~~~~ 24 (230)
|.||++||++....+.++|+++-.
T Consensus 1 ~~d~y~~Lgv~~~a~~~~ik~ayr 24 (371)
T PRK14292 1 MMDYYELLGVSRTASADEIKSAYR 24 (371)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHH
Confidence 689999999999998888877543
No 79
>KOG0713|consensus
Probab=63.61 E-value=4.5 Score=37.43 Aligned_cols=22 Identities=50% Similarity=0.780 Sum_probs=19.7
Q ss_pred ccHHHHhccCCCCChhhhhhhh
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKAS 23 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~ 23 (230)
.|||+||+|.+..+.++|+++-
T Consensus 16 rDfYelLgV~k~Asd~eIKkAY 37 (336)
T KOG0713|consen 16 RDFYELLGVPKNASDQEIKKAY 37 (336)
T ss_pred CCHHHHhCCCCCCCHHHHHHHH
Confidence 6999999999999999998754
No 80
>PRK14296 chaperone protein DnaJ; Provisional
Probab=60.79 E-value=5.4 Score=37.29 Aligned_cols=23 Identities=48% Similarity=0.793 Sum_probs=19.7
Q ss_pred ccHHHHhccCCCCChhhhhhhhc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASH 24 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~ 24 (230)
.|||.||+|.+.++.++|+++-.
T Consensus 4 ~dyY~~Lgv~~~a~~~eik~ayr 26 (372)
T PRK14296 4 KDYYEVLGVSKTASEQEIRQAYR 26 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHH
Confidence 49999999999999998888543
No 81
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=59.72 E-value=44 Score=24.53 Aligned_cols=34 Identities=12% Similarity=0.259 Sum_probs=27.0
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q psy13284 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNP 62 (230)
Q Consensus 29 dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~ 62 (230)
+.-++.++++.|+.+||+.|-++...|+.--..|
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P 37 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLSGTTHP 37 (88)
T ss_pred chHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence 4567889999999999999988888887443333
No 82
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=56.57 E-value=11 Score=35.90 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=20.2
Q ss_pred ccHHHHhccCCCCChhhhhhhhcc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHS 25 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~ 25 (230)
.|||+||+|...++.++|+++-..
T Consensus 28 ~d~Y~vLGV~~~As~~eIKkAYrk 51 (421)
T PTZ00037 28 EKLYEVLNLSKDCTTSEIKKAYRK 51 (421)
T ss_pred hhHHHHcCCCCCCCHHHHHHHHHH
Confidence 489999999999999999885433
No 83
>PRK14298 chaperone protein DnaJ; Provisional
Probab=56.22 E-value=6.9 Score=36.63 Aligned_cols=24 Identities=50% Similarity=0.808 Sum_probs=19.8
Q ss_pred ccHHHHhccCCCCChhhhhhhhcc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHS 25 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~ 25 (230)
.||+.||+|.+..+.++|+++-..
T Consensus 5 ~d~y~iLgv~~~a~~~eik~ayr~ 28 (377)
T PRK14298 5 RDYYEILGLSKDASVEDIKKAYRK 28 (377)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHH
Confidence 499999999999999888875433
No 84
>PRK14276 chaperone protein DnaJ; Provisional
Probab=55.33 E-value=7.7 Score=36.30 Aligned_cols=24 Identities=46% Similarity=0.720 Sum_probs=20.0
Q ss_pred ccHHHHhccCCCCChhhhhhhhcc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHS 25 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~ 25 (230)
.||+.||+|.+.++.++|+++-..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~ 27 (380)
T PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRK 27 (380)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHH
Confidence 589999999999999988875433
No 85
>PRK14291 chaperone protein DnaJ; Provisional
Probab=54.97 E-value=8 Score=36.23 Aligned_cols=25 Identities=40% Similarity=0.721 Sum_probs=20.6
Q ss_pred ccHHHHhccCCCCChhhhhhhhccC
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHSS 26 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~~ 26 (230)
.|||.||++.+..+.++|+++-...
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~l 27 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRL 27 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHH
Confidence 5899999999999999888855433
No 86
>PRK14287 chaperone protein DnaJ; Provisional
Probab=54.78 E-value=7.2 Score=36.42 Aligned_cols=24 Identities=50% Similarity=0.855 Sum_probs=20.3
Q ss_pred ccHHHHhccCCCCChhhhhhhhcc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHS 25 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~ 25 (230)
+||+.||+|.+..+.++|+++-..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~ 27 (371)
T PRK14287 4 RDYYEVLGVDRNASVDEVKKAYRK 27 (371)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHH
Confidence 599999999999999998885533
No 87
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=54.47 E-value=8.2 Score=35.60 Aligned_cols=23 Identities=52% Similarity=0.868 Sum_probs=19.0
Q ss_pred cHHHHhccCCCCChhhhhhhhcc
Q psy13284 3 DYYKVLGVDKQSSTGDIKKASHS 25 (230)
Q Consensus 3 d~~~i~~~~~~~~~~~~~~~~~~ 25 (230)
||++||+|....+.++|+++-..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~ 23 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRK 23 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHH
Confidence 79999999998888888775533
No 88
>KOG3442|consensus
Probab=53.92 E-value=18 Score=28.94 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=33.0
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q psy13284 26 SMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPD 63 (230)
Q Consensus 26 ~~~dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~ 63 (230)
++...-.||+|....+.++|.+.|..|-....+.|...
T Consensus 57 TlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 57 TLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred cHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 44678899999999999999999999999998877653
No 89
>PRK14288 chaperone protein DnaJ; Provisional
Probab=53.30 E-value=17 Score=33.92 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=21.1
Q ss_pred ccHHHHhccCCCCChhhhhhhhccC
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHSS 26 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~~ 26 (230)
.|||+||+|.+.++.++|+++-...
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkl 27 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKL 27 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHH
Confidence 5999999999999999998865443
No 90
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=52.87 E-value=7.7 Score=19.08 Aligned_cols=13 Identities=54% Similarity=0.902 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhh
Q psy13284 71 KFKEISEAYEVLS 83 (230)
Q Consensus 71 ~F~~I~eAYevLs 83 (230)
+|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4778888888774
No 91
>PRK14300 chaperone protein DnaJ; Provisional
Probab=52.65 E-value=9 Score=35.75 Aligned_cols=22 Identities=55% Similarity=0.896 Sum_probs=19.0
Q ss_pred ccHHHHhccCCCCChhhhhhhh
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKAS 23 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~ 23 (230)
.||++||+|....+.++|+++-
T Consensus 3 ~~~y~iLgv~~~as~~eik~ay 24 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAY 24 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHH
Confidence 6999999999999888887744
No 92
>KOG0721|consensus
Probab=52.44 E-value=35 Score=29.98 Aligned_cols=43 Identities=40% Similarity=0.634 Sum_probs=30.3
Q ss_pred ccHHHHhccCCCCChhhhhhhhccCccchhhhhCCC--CC---------CCHHHHHHHHHHH
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHSSMLDYYKVLGVD--KQ---------SSTGDIKKAYRKL 52 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~~~~dyY~iLgv~--~~---------as~~eIKkaYrkl 52 (230)
-|+++||+++.-.+..+|+++ |..|-+. |+ ...+.|.|||..|
T Consensus 99 fDPyEILGl~pgas~~eIKka--------YR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aL 152 (230)
T KOG0721|consen 99 FDPYEILGLDPGASEKEIKKA--------YRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQAL 152 (230)
T ss_pred CCcHHhhCCCCCCCHHHHHHH--------HHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHh
Confidence 489999999999999988764 4444332 21 2456788888776
No 93
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=51.08 E-value=17 Score=21.38 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHHhC
Q psy13284 41 STGDIKKAYRKLALKWH 57 (230)
Q Consensus 41 s~~eIKkaYrklalk~H 57 (230)
..++.|.+.|+.||.||
T Consensus 9 ~~~~~r~~lR~AALeYH 25 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYH 25 (28)
T ss_pred chHHHHHHHHHHHHHhc
Confidence 34788999999999999
No 94
>PRK14281 chaperone protein DnaJ; Provisional
Probab=49.39 E-value=13 Score=35.06 Aligned_cols=23 Identities=48% Similarity=0.813 Sum_probs=19.5
Q ss_pred ccHHHHhccCCCCChhhhhhhhc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASH 24 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~ 24 (230)
.||+.||++.+.++.++|+++-.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr 25 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYR 25 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHH
Confidence 69999999999998888877543
No 95
>PRK14299 chaperone protein DnaJ; Provisional
Probab=48.70 E-value=10 Score=34.09 Aligned_cols=25 Identities=48% Similarity=0.704 Sum_probs=20.5
Q ss_pred ccHHHHhccCCCCChhhhhhhhccC
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHSS 26 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~~ 26 (230)
.||++||++....+.++|+++-...
T Consensus 4 ~d~y~vLgv~~~a~~~eik~ayr~l 28 (291)
T PRK14299 4 KDYYAILGVPKNASQDEIKKAFKKL 28 (291)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHH
Confidence 5999999999999888888765443
No 96
>KOG0718|consensus
Probab=48.57 E-value=26 Score=34.10 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=17.5
Q ss_pred cHHHHhccCCCCChhhhhhhh
Q psy13284 3 DYYKVLGVDKQSSTGDIKKAS 23 (230)
Q Consensus 3 d~~~i~~~~~~~~~~~~~~~~ 23 (230)
||+.+|++.+..+.++++.+-
T Consensus 10 e~Ya~LNlpkdAt~eeI~~AY 30 (546)
T KOG0718|consen 10 ELYALLNLPKDATDEEIKKAY 30 (546)
T ss_pred hHHHHhCCCcccCHHHHHHHH
Confidence 799999999888888887643
No 97
>PRK14280 chaperone protein DnaJ; Provisional
Probab=47.14 E-value=13 Score=34.72 Aligned_cols=24 Identities=54% Similarity=0.811 Sum_probs=20.0
Q ss_pred ccHHHHhccCCCCChhhhhhhhcc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHS 25 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~ 25 (230)
.||+.||++.+.++.++|+++-..
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~ 27 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRK 27 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHH
Confidence 599999999999999988875433
No 98
>PRK10767 chaperone protein DnaJ; Provisional
Probab=46.60 E-value=12 Score=34.82 Aligned_cols=24 Identities=50% Similarity=0.808 Sum_probs=20.0
Q ss_pred ccHHHHhccCCCCChhhhhhhhcc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHS 25 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~ 25 (230)
.||+.||+|...++.++|+++-..
T Consensus 4 ~d~y~iLgv~~~as~~eik~ayr~ 27 (371)
T PRK10767 4 RDYYEVLGVSRNASEDEIKKAYRK 27 (371)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHH
Confidence 599999999999988888875543
No 99
>PRK14277 chaperone protein DnaJ; Provisional
Probab=46.02 E-value=13 Score=34.79 Aligned_cols=24 Identities=46% Similarity=0.837 Sum_probs=20.2
Q ss_pred ccHHHHhccCCCCChhhhhhhhcc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHS 25 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~ 25 (230)
.||+.||++...++.++|+++-..
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~ 28 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRR 28 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHH
Confidence 589999999999999998885543
No 100
>PRK14290 chaperone protein DnaJ; Provisional
Probab=45.29 E-value=13 Score=34.51 Aligned_cols=26 Identities=54% Similarity=0.792 Sum_probs=21.2
Q ss_pred ccHHHHhccCCCCChhhhhhhhccCc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHSSM 27 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~~~ 27 (230)
.||++||+|...++.++|+++-..-.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la 28 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELA 28 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999998888654443
No 101
>PRK14278 chaperone protein DnaJ; Provisional
Probab=45.23 E-value=7.9 Score=36.23 Aligned_cols=24 Identities=42% Similarity=0.754 Sum_probs=20.1
Q ss_pred ccHHHHhccCCCCChhhhhhhhcc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHS 25 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~ 25 (230)
.|||.||+|.+.++.++|+++-..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~ 26 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRK 26 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHH
Confidence 599999999999988888875533
No 102
>PRK14283 chaperone protein DnaJ; Provisional
Probab=43.54 E-value=15 Score=34.28 Aligned_cols=24 Identities=50% Similarity=0.829 Sum_probs=20.2
Q ss_pred ccHHHHhccCCCCChhhhhhhhcc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHS 25 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~ 25 (230)
.||+.||++....+.++|+++-..
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~ 28 (378)
T PRK14283 5 RDYYEVLGVDRNADKKEIKKAYRK 28 (378)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHH
Confidence 489999999999999999885433
No 103
>PRK14279 chaperone protein DnaJ; Provisional
Probab=40.61 E-value=36 Score=32.04 Aligned_cols=24 Identities=46% Similarity=0.690 Sum_probs=20.2
Q ss_pred ccHHHHhccCCCCChhhhhhhhcc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHS 25 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~ 25 (230)
.||+.||+|.+..+.++|+++-..
T Consensus 9 ~Dyy~~Lgv~~~a~~~eik~ayr~ 32 (392)
T PRK14279 9 KDFYKELGVSSDASAEEIKKAYRK 32 (392)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHH
Confidence 499999999999999999885433
No 104
>PRK14282 chaperone protein DnaJ; Provisional
Probab=39.77 E-value=18 Score=33.69 Aligned_cols=24 Identities=38% Similarity=0.773 Sum_probs=20.1
Q ss_pred ccHHHHhccCCCCChhhhhhhhcc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHS 25 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~ 25 (230)
.||+.||+|.+.++.++|+++-..
T Consensus 4 ~d~y~~lgv~~~a~~~eik~ayr~ 27 (369)
T PRK14282 4 KDYYEILGVSRNATQEEIKRAYKR 27 (369)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHH
Confidence 599999999999999988875533
No 105
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=39.58 E-value=13 Score=29.29 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=30.5
Q ss_pred ccHHHHhccCCCCChhhhhhhhccCccchhhhhCCCCCCCHHHHHHHHHHHH
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHSSMLDYYKVLGVDKQSSTGDIKKAYRKLA 53 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~~~~dyY~iLgv~~~as~~eIKkaYrkla 53 (230)
.|+++||++....+.++|++.-..-+..+----+-+ ..-.++|.+||..|.
T Consensus 65 ~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs-~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS-TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHHh
Confidence 478999999998888888764433322111001100 113567888888774
No 106
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=38.99 E-value=23 Score=32.07 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=20.3
Q ss_pred CccHHHHhccCCCCChhhhhhhhcc
Q psy13284 1 MLDYYKVLGVDKQSSTGDIKKASHS 25 (230)
Q Consensus 1 ~~d~~~i~~~~~~~~~~~~~~~~~~ 25 (230)
+.||+.||++....+.++|+++-..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~ 27 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRR 27 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHH
Confidence 3699999999999988888875433
No 107
>PRK14286 chaperone protein DnaJ; Provisional
Probab=36.03 E-value=35 Score=31.86 Aligned_cols=23 Identities=39% Similarity=0.691 Sum_probs=19.7
Q ss_pred ccHHHHhccCCCCChhhhhhhhc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASH 24 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~ 24 (230)
.||+.||+|....+.++|+++-.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr 26 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYR 26 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHH
Confidence 59999999999999998887543
No 108
>PRK14295 chaperone protein DnaJ; Provisional
Probab=35.75 E-value=35 Score=32.07 Aligned_cols=25 Identities=52% Similarity=0.765 Sum_probs=20.5
Q ss_pred ccHHHHhccCCCCChhhhhhhhccC
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHSS 26 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~~ 26 (230)
.||+.||+|.+.++.++|+++-..-
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~l 33 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKL 33 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHH
Confidence 4999999999999999888855443
No 109
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=35.19 E-value=86 Score=20.51 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy13284 46 KKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDD 93 (230)
Q Consensus 46 KkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~ 93 (230)
.+.+++..+..||+.+ ..+..+.|.+.|..|++.++....+.
T Consensus 12 ~~~~~~~~~~~~~~~~------~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGLS------VGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCCC------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556677778888843 23467789999999998776554443
No 110
>PRK14293 chaperone protein DnaJ; Provisional
Probab=34.73 E-value=25 Score=32.79 Aligned_cols=22 Identities=36% Similarity=0.836 Sum_probs=18.7
Q ss_pred ccHHHHhccCCCCChhhhhhhh
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKAS 23 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~ 23 (230)
.||+.||++.+.++.++|+++-
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ay 24 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAY 24 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHH
Confidence 6999999999988888887754
No 111
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=34.70 E-value=1.8e+02 Score=21.29 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=34.8
Q ss_pred hhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHHHhhhh
Q psy13284 30 YYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPD--NQSEANKKFKEISEAYEVLSD 84 (230)
Q Consensus 30 yY~iLgv~~~as~~eIKkaYrklalk~HPDkn~~--~~~~a~~~F~~I~eAYevLsd 84 (230)
--.+-++.|.|+.+||..|-.+...|.-=-..|. +.+.-++.-.+|..|-.-|.|
T Consensus 5 I~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~ 61 (78)
T PF10041_consen 5 IKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLD 61 (78)
T ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456678899999999999998888875443332 222233344455555555543
No 112
>PRK14297 chaperone protein DnaJ; Provisional
Probab=34.35 E-value=39 Score=31.59 Aligned_cols=25 Identities=48% Similarity=0.731 Sum_probs=20.4
Q ss_pred ccHHHHhccCCCCChhhhhhhhccC
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHSS 26 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~~ 26 (230)
.||+.||++.+..+.++|+++...-
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~l 28 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKL 28 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHH
Confidence 5999999999999999888755433
No 113
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=34.25 E-value=50 Score=30.26 Aligned_cols=58 Identities=26% Similarity=0.299 Sum_probs=39.9
Q ss_pred cchhhhhCCCC-CCCHHHHHHHHHHHHHHh-------CCCCCCC--chHHHHHHHHHHHHHHHhhhhh
Q psy13284 28 LDYYKVLGVDK-QSSTGDIKKAYRKLALKW-------HPDKNPD--NQSEANKKFKEISEAYEVLSDE 85 (230)
Q Consensus 28 ~dyY~iLgv~~-~as~~eIKkaYrklalk~-------HPDkn~~--~~~~a~~~F~~I~eAYevLsd~ 85 (230)
.+.++-||++. ..+.+|+++-.++++.+. ++|.+.. ....-++.++++.+||+.|.+.
T Consensus 82 ~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~ 149 (318)
T PF12725_consen 82 PPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAER 149 (318)
T ss_pred cCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 46778899998 889999998888776543 3332210 0012357899999999998853
No 114
>COG2879 Uncharacterized small protein [Function unknown]
Probab=33.37 E-value=72 Score=22.58 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=14.2
Q ss_pred HHHHHHHHHhCCCCCCCc
Q psy13284 47 KAYRKLALKWHPDKNPDN 64 (230)
Q Consensus 47 kaYrklalk~HPDkn~~~ 64 (230)
..|-.-.++.|||+.+-.
T Consensus 26 dnYVehmr~~hPd~p~mT 43 (65)
T COG2879 26 DNYVEHMRKKHPDKPPMT 43 (65)
T ss_pred HHHHHHHHHhCcCCCccc
Confidence 357777889999998853
No 115
>PRK14284 chaperone protein DnaJ; Provisional
Probab=33.28 E-value=62 Score=30.38 Aligned_cols=22 Identities=55% Similarity=0.911 Sum_probs=19.3
Q ss_pred ccHHHHhccCCCCChhhhhhhh
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKAS 23 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~ 23 (230)
.||+.||+|.+.++.++|+++-
T Consensus 1 ~d~y~iLgv~~~a~~~eikkay 22 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAY 22 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHH
Confidence 4899999999999999988864
No 116
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=32.82 E-value=86 Score=21.71 Aligned_cols=41 Identities=27% Similarity=0.386 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy13284 47 KAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDD 93 (230)
Q Consensus 47 kaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~ 93 (230)
+..|...++-||+... .+..+.|.+.|..|++.+|...++.
T Consensus 14 ~~~r~~~~~~~p~~~~------~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLKEN------RAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455666677887532 2467789999999999887665544
No 117
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=32.04 E-value=1.3e+02 Score=20.06 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy13284 46 KKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYD 92 (230)
Q Consensus 46 KkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD 92 (230)
.+..+...+..||+.. ..+.-+.|.+.|.-|++.++....+
T Consensus 12 ~~~~~~~~k~~~p~~~------~~~i~~~~~~~W~~l~~~eK~~y~~ 52 (69)
T PF00505_consen 12 CKEKRAKLKEENPDLS------NKEISKILAQMWKNLSEEEKAPYKE 52 (69)
T ss_dssp HHHHHHHHHHHSTTST------HHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc------cccchhhHHHHHhcCCHHHHHHHHH
Confidence 3445556667788765 2356778899999998776654433
No 118
>PRK14294 chaperone protein DnaJ; Provisional
Probab=31.63 E-value=40 Score=31.33 Aligned_cols=24 Identities=42% Similarity=0.769 Sum_probs=20.1
Q ss_pred ccHHHHhccCCCCChhhhhhhhcc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHS 25 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~ 25 (230)
.||+.||+|.+.++.++|+++-..
T Consensus 4 ~d~y~~lgv~~~a~~~eik~ayr~ 27 (366)
T PRK14294 4 RDYYEILGVTRDASEEEIKKSYRK 27 (366)
T ss_pred CChHHHhCCCCCCCHHHHHHHHHH
Confidence 599999999999888888875543
No 119
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=30.87 E-value=86 Score=20.73 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy13284 49 YRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDD 93 (230)
Q Consensus 49 Yrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~ 93 (230)
.|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 15 ~r~~~~~~~p~~~------~~~i~~~~~~~W~~ls~~eK~~y~~~ 53 (66)
T cd01390 15 QRPKLKKENPDAS------VTEVTKILGEKWKELSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHCcCCC------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4455566788743 23577889999999998776655444
No 120
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=30.60 E-value=98 Score=21.67 Aligned_cols=41 Identities=15% Similarity=0.070 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy13284 46 KKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYD 92 (230)
Q Consensus 46 KkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD 92 (230)
.+.+|+.++..||+... .+.-+.|.+.|..|++.++...++
T Consensus 13 ~~~~r~~~~~~~p~~~~------~eisk~~g~~Wk~ls~eeK~~y~~ 53 (77)
T cd01389 13 RQDKHAQLKTENPGLTN------NEISRIIGRMWRSESPEVKAYYKE 53 (77)
T ss_pred HHHHHHHHHHHCCCCCH------HHHHHHHHHHHhhCCHHHHHHHHH
Confidence 45667778888998642 246678999999999877654444
No 121
>PF12057 DUF3538: Domain of unknown function (DUF3538); InterPro: IPR021925 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain is found associated with PF00240 from PFAM. This domain has a conserved SDL sequence motif.
Probab=30.17 E-value=97 Score=24.63 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=10.7
Q ss_pred ccchhhhhCCCCCCC
Q psy13284 27 MLDYYKVLGVDKQSS 41 (230)
Q Consensus 27 ~~dyY~iLgv~~~as 41 (230)
+.-||+||.-++++.
T Consensus 19 lery~~iL~~~~~~e 33 (120)
T PF12057_consen 19 LERYHEILQEDPSFE 33 (120)
T ss_pred HHHHHHHHhcCCCCC
Confidence 457888888777553
No 122
>PRK14285 chaperone protein DnaJ; Provisional
Probab=29.92 E-value=86 Score=29.15 Aligned_cols=23 Identities=48% Similarity=0.800 Sum_probs=19.7
Q ss_pred ccHHHHhccCCCCChhhhhhhhc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASH 24 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~ 24 (230)
.||++||++...++.++|+++-.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr 25 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYR 25 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHH
Confidence 69999999999999998887543
No 123
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=28.92 E-value=1.5e+02 Score=27.27 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=40.4
Q ss_pred hhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-------------------------CchHHHHHHHHHHHHHHHhhhhh
Q psy13284 31 YKVLGVDKQSSTGDIKKAYRKLALKWHPDKNP-------------------------DNQSEANKKFKEISEAYEVLSDE 85 (230)
Q Consensus 31 Y~iLgv~~~as~~eIKkaYrklalk~HPDkn~-------------------------~~~~~a~~~F~~I~eAYevLsd~ 85 (230)
|+-=.+++..+.+||.+|.+..--.+|||... .....+.--++.+++.|.++-+=
T Consensus 39 ~~~g~~~~~~~~~~lw~Ak~l~~Sa~HPDTge~i~~~fRmsa~vP~n~~i~~~mL~~~~s~~~~ifwQw~NQS~Na~vNy 118 (308)
T PF03820_consen 39 YRAGKVPPGLTDDELWKAKKLYDSAFHPDTGEKIPLPFRMSAFVPFNMPITGGMLTPYKSTPAVIFWQWVNQSYNAAVNY 118 (308)
T ss_pred hcCCCCCCCCCHHHHHHHHHHhhcccCCCCCCccccccccccccccchHHHHHHhccCcchHHHHHHHHHHhHHHHHHhh
Confidence 33333445569999999999999999999631 11123455678899999988765
Q ss_pred hhh
Q psy13284 86 KKR 88 (230)
Q Consensus 86 ~kR 88 (230)
..|
T Consensus 119 ~Nr 121 (308)
T PF03820_consen 119 TNR 121 (308)
T ss_pred hcc
Confidence 544
No 124
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=27.48 E-value=97 Score=21.15 Aligned_cols=30 Identities=23% Similarity=0.523 Sum_probs=20.4
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q psy13284 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKN 61 (230)
Q Consensus 29 dyY~iLgv~~~as~~eIKkaYrklalk~HPDkn 61 (230)
-||+||.++. .+ +|=|..|-+ .+|-||+..
T Consensus 12 AFY~vl~~~n-Lt-eeQrn~yI~-~lKddPs~s 41 (54)
T PF02216_consen 12 AFYEVLHMPN-LT-EEQRNGYIQ-SLKDDPSRS 41 (54)
T ss_dssp HHHHHHCSTT-S--HHHHHHHHH-HHHH-GCCH
T ss_pred HHHHHHcCCC-cC-HHHHHhHHH-HHhhChHHH
Confidence 5899999876 33 444777776 577888764
No 125
>PRK14301 chaperone protein DnaJ; Provisional
Probab=26.15 E-value=1.1e+02 Score=28.58 Aligned_cols=22 Identities=55% Similarity=0.874 Sum_probs=18.7
Q ss_pred ccHHHHhccCCCCChhhhhhhh
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKAS 23 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~ 23 (230)
.||+.||++.+.++.++|+++-
T Consensus 4 ~~~y~~Lgv~~~a~~~~ik~ay 25 (373)
T PRK14301 4 RDYYEVLGVSRDASEDEIKKAY 25 (373)
T ss_pred CChHHhcCCCCCCCHHHHHHHH
Confidence 5999999999988888887744
No 126
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=25.68 E-value=1.4e+02 Score=22.25 Aligned_cols=51 Identities=20% Similarity=0.428 Sum_probs=30.9
Q ss_pred CCCCCC-CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhh-hcC
Q psy13284 35 GVDKQS-STGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYD-DRG 95 (230)
Q Consensus 35 gv~~~a-s~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD-~~g 95 (230)
|++|+. ...+|-+.++.++..+++ . ..+.+..|.+.| +.||.-+..|| .++
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~---~-----~~~~~~~l~~~y--~~~~~~~~~~~~~~~ 103 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG---G-----DPELLRGLAQMY--VEDPRFAAMYDKKFG 103 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS-----------HHHHHHHHHHT--TSTHHHHHHHG-GGS
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC---C-----CHHHHHHHHHHH--HcCHHHHhhccccCC
Confidence 556643 344555666677777766 1 124677788888 67888888888 554
No 127
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=25.66 E-value=45 Score=28.17 Aligned_cols=59 Identities=20% Similarity=0.306 Sum_probs=33.3
Q ss_pred hhCCCCCCCHHHHHHHHHHH---HHHhCCCCC---------------CCchHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy13284 33 VLGVDKQSSTGDIKKAYRKL---ALKWHPDKN---------------PDNQSEANKKFKEISEAYEVLSDEKKRRIY 91 (230)
Q Consensus 33 iLgv~~~as~~eIKkaYrkl---alk~HPDkn---------------~~~~~~a~~~F~~I~eAYevLsd~~kR~~Y 91 (230)
+|.+-++.+.++++++...+ ...-|||+. +...+..++.=+.+.+||+.|....-+.+|
T Consensus 64 ~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~ 140 (178)
T PF14606_consen 64 VLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLY 140 (178)
T ss_dssp EEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEE
T ss_pred EEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 44455557888888866555 456799971 111233445556677888887654444454
No 128
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=25.48 E-value=71 Score=26.41 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhh
Q psy13284 66 SEANKKFKEISEAYEVLSDEKKRRI 90 (230)
Q Consensus 66 ~~a~~~F~~I~eAYevLsd~~kR~~ 90 (230)
++.+++...|.++.++|.||.++.+
T Consensus 62 eEetkrLa~ireeLE~l~dP~RkEv 86 (159)
T PF04949_consen 62 EEETKRLAEIREELEVLADPMRKEV 86 (159)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHH
Confidence 5778899999999999999977654
No 129
>KOG0527|consensus
Probab=24.68 E-value=85 Score=29.15 Aligned_cols=41 Identities=24% Similarity=0.416 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy13284 47 KAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDD 93 (230)
Q Consensus 47 kaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~ 93 (230)
+..|+...+-.||.+- -|.-|+|-.-|..|++.+||-.+|.
T Consensus 75 q~~RRkma~qnP~mHN------SEISK~LG~~WK~Lse~EKrPFi~E 115 (331)
T KOG0527|consen 75 QGQRRKLAKQNPKMHN------SEISKRLGAEWKLLSEEEKRPFVDE 115 (331)
T ss_pred HHHHHHHHHhCcchhh------HHHHHHHHHHHhhcCHhhhccHHHH
Confidence 4556666666687642 1478899999999999999988874
No 130
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=24.57 E-value=43 Score=34.72 Aligned_cols=46 Identities=30% Similarity=0.445 Sum_probs=29.6
Q ss_pred ccHHHHhccCCCCChhhhhhhhccCccchhhhhCCCCCC--------CHHHHHHHHHHHH
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHSSMLDYYKVLGVDKQS--------STGDIKKAYRKLA 53 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~~~~dyY~iLgv~~~a--------s~~eIKkaYrkla 53 (230)
+||++||++......++|++.-..... -.+|+. -..+|++||.-|.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAK------KyHPDKn~~~eAeekFqeINEAYEVLS 55 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAK------KYHPDRNKAPDAASIFAEINEANDVLS 55 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHH------HHCcCCCCChhHHHHHHHHHHHHHHhC
Confidence 699999999998888888775322211 222221 1345788888774
No 131
>PRK14289 chaperone protein DnaJ; Provisional
Probab=24.57 E-value=1.2e+02 Score=28.30 Aligned_cols=22 Identities=55% Similarity=0.859 Sum_probs=19.1
Q ss_pred ccHHHHhccCCCCChhhhhhhh
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKAS 23 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~ 23 (230)
.||+.||+|.+..+.++|+++-
T Consensus 5 ~~~y~~Lgv~~~a~~~eik~ay 26 (386)
T PRK14289 5 RDYYEVLGVSKTATVDEIKKAY 26 (386)
T ss_pred CCHHHHcCCCCCCCHHHHHHHH
Confidence 4899999999999999888753
No 132
>KOG3960|consensus
Probab=23.90 E-value=58 Score=29.24 Aligned_cols=15 Identities=33% Similarity=0.775 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhhh
Q psy13284 69 NKKFKEISEAYEVLS 83 (230)
Q Consensus 69 ~~~F~~I~eAYevLs 83 (230)
..+.++||||+|+|+
T Consensus 127 RRRLkKVNEAFE~LK 141 (284)
T KOG3960|consen 127 RRRLKKVNEAFETLK 141 (284)
T ss_pred HHHHHHHHHHHHHHH
Confidence 367999999999997
No 133
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=23.70 E-value=79 Score=28.16 Aligned_cols=27 Identities=41% Similarity=0.543 Sum_probs=21.9
Q ss_pred ccHHHHhccCCCCChhhhhhhhccCcc
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHSSML 28 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~~~~ 28 (230)
.|+++||+++...+.+++++.-..-+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~ 226 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMS 226 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999886655443
No 134
>PF03912 Psb28: Psb28 protein; InterPro: IPR005610 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein Psb28 (PsbW) found in PSII, where it is a subunit of the oxygen-evolving complex. Psb28 appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of Psb28, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 1 Psb28.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0016020 membrane; PDB: 2KVO_A.
Probab=22.51 E-value=1.3e+02 Score=23.40 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=18.6
Q ss_pred CeEEeeecceeecCeEEEEEEEEeecC
Q psy13284 204 AVKTTSTSTRFIDGKKVTTKKMAFMNS 230 (230)
Q Consensus 204 ~~~~~stst~~vnG~~~~tk~~~~~~~ 230 (230)
-...+-.+.|+|||+.....-+.+|+|
T Consensus 59 ei~t~~v~~kFvnG~p~~iEa~y~m~s 85 (108)
T PF03912_consen 59 EISTRDVNAKFVNGKPQAIEATYIMKS 85 (108)
T ss_dssp EEEE--EEEEEETTEEEEEEEEEEE-S
T ss_pred cEEEEecceEEECCceEEEEEEEEECC
Confidence 355566788999999888777777764
No 135
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=22.50 E-value=2e+02 Score=18.49 Aligned_cols=50 Identities=26% Similarity=0.448 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH-Hhhhhhhhhhhhhhc
Q psy13284 44 DIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAY-EVLSDEKKRRIYDDR 94 (230)
Q Consensus 44 eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAY-evLsd~~kR~~YD~~ 94 (230)
+.+++|++|.....-+.....=..+..++. -...| .++++..++.+|..|
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~-~d~ry~~l~~~~~r~~lF~~~ 52 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLK-NDPRYKALLSESEREQLFEDH 52 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHh-cChHHHHhcChHHHHHHHHHH
Confidence 467788888665533311111123333332 23345 455555666666655
No 136
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.27 E-value=2.5e+02 Score=23.70 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhh
Q psy13284 41 STGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSD 84 (230)
Q Consensus 41 s~~eIKkaYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd 84 (230)
+.+++++..+.++..+. + .++|++.++++.+.++.+..
T Consensus 109 ~~~~~~~~i~~lg~~~g--~----~~~a~~~~~~~~~~~~~i~~ 146 (262)
T cd01147 109 SLEDTPEQIRLLGKVLG--K----EERAEELISFIESILADVEE 146 (262)
T ss_pred chHhHHHHHHHHHHHhC--C----HHHHHHHHHHHHHHHHHHHH
Confidence 47899999999998874 1 24677777777777777654
No 137
>smart00398 HMG high mobility group.
Probab=22.06 E-value=2.4e+02 Score=18.49 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy13284 48 AYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDD 93 (230)
Q Consensus 48 aYrklalk~HPDkn~~~~~~a~~~F~~I~eAYevLsd~~kR~~YD~ 93 (230)
..|.-.+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 15 ~~r~~~~~~~~~~~------~~~i~~~~~~~W~~l~~~ek~~y~~~ 54 (70)
T smart00398 15 ENRAKIKAENPDLS------NAEISKKLGERWKLLSEEEKAPYEEK 54 (70)
T ss_pred HHHHHHHHHCcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444556678754 23456788899999988776555443
No 138
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=20.87 E-value=30 Score=24.01 Aligned_cols=29 Identities=24% Similarity=0.606 Sum_probs=19.8
Q ss_pred cchhhhhCCCCCCCHHHH-HHHHHHHHHHhCCCC
Q psy13284 28 LDYYKVLGVDKQSSTGDI-KKAYRKLALKWHPDK 60 (230)
Q Consensus 28 ~dyY~iLgv~~~as~~eI-KkaYrklalk~HPDk 60 (230)
..++++||+++ +++ +.....+....|||-
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 46899999877 566 556666777899863
No 139
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=20.69 E-value=1.4e+02 Score=23.29 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=21.1
Q ss_pred CeEEeeecceeecCeEEEEEEEEeecC
Q psy13284 204 AVKTTSTSTRFIDGKKVTTKKMAFMNS 230 (230)
Q Consensus 204 ~~~~~stst~~vnG~~~~tk~~~~~~~ 230 (230)
-....-.+.|+||||.....-+.+|+|
T Consensus 59 ei~tr~v~~KFvnGkp~~iEa~y~m~s 85 (109)
T TIGR03047 59 EIVTREVKAKFVNGKPKALEAVYIMKS 85 (109)
T ss_pred cEEEEecceEEECCCccEEEEEEEECC
Confidence 455666788999999988887777764
No 140
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=20.38 E-value=1.2e+02 Score=29.70 Aligned_cols=60 Identities=32% Similarity=0.501 Sum_probs=35.8
Q ss_pred ccHHHHhccCCCCChhhhhhhhccCccch--hhhhCCCC------CCCHHHHHHHHHHHH--------HHh-CCCCC
Q psy13284 2 LDYYKVLGVDKQSSTGDIKKASHSSMLDY--YKVLGVDK------QSSTGDIKKAYRKLA--------LKW-HPDKN 61 (230)
Q Consensus 2 ~d~~~i~~~~~~~~~~~~~~~~~~~~~dy--Y~iLgv~~------~as~~eIKkaYrkla--------lk~-HPDkn 61 (230)
-|++.||+.+...+..++++..+.-.+.| -++-.+-+ .-...+|.|||+-|. ++| |||-.
T Consensus 98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p 174 (610)
T COG5407 98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP 174 (610)
T ss_pred CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence 48999999999999999887543322211 11111111 114567888888763 333 88864
No 141
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=20.25 E-value=66 Score=24.47 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=17.6
Q ss_pred hhCCCCCCCHHHHHHHHHHHH
Q psy13284 33 VLGVDKQSSTGDIKKAYRKLA 53 (230)
Q Consensus 33 iLgv~~~as~~eIKkaYrkla 53 (230)
++-|.++|+..|||+|..+|-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 567889999999999987763
No 142
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=20.20 E-value=3.4e+02 Score=22.45 Aligned_cols=10 Identities=40% Similarity=0.438 Sum_probs=7.5
Q ss_pred HHHhCCCCCC
Q psy13284 53 ALKWHPDKNP 62 (230)
Q Consensus 53 alk~HPDkn~ 62 (230)
++..|||...
T Consensus 67 ~l~~HP~lg~ 76 (166)
T PRK13798 67 ALAGHPRIGE 76 (166)
T ss_pred HHHhCCcccC
Confidence 5678999753
Done!