RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13284
(230 letters)
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 129 bits (328), Expect = 6e-36
Identities = 62/142 (43%), Positives = 77/142 (54%), Gaps = 32/142 (22%)
Query: 26 SMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDE 85
+ DYY+VLGV + +S +IKKAYRKLA+K+HPD+NP ++ EA +KFKEI EAYEVLSD
Sbjct: 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDK-EAEEKFKEIKEAYEVLSDP 60
Query: 86 KKRRIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSA 145
+KR YD G +E G FGG GF D+F + FG
Sbjct: 61 QKRAAYDQYGHAAFEQGGGGG--------------GFGGG-GGF-----GDIFGDIFG-- 98
Query: 146 SPFNDIFG-----IRPRNNRGD 162
DIFG R R RG
Sbjct: 99 ----DIFGGGRGGGRQRARRGA 116
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 128 bits (324), Expect = 2e-35
Identities = 60/139 (43%), Positives = 77/139 (55%), Gaps = 26/139 (18%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY++LGV K +S +IKKAYRKLA K+HPD+NP ++ EA +KFKEI+EAYEVLSD +KR
Sbjct: 5 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDK-EAEEKFKEINEAYEVLSDPEKR 63
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSASPF 148
YD G G++ FGGF G D D+F +FFG
Sbjct: 64 AAYDQFGHAGFKAG------------------GFGGFGFGGFGGDFGDIFEDFFGGGG-- 103
Query: 149 NDIFGIRPRNN--RGDETQ 165
G R N RG + +
Sbjct: 104 ---GGRRRPNRPRRGADLR 119
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 127 bits (322), Expect = 3e-35
Identities = 53/115 (46%), Positives = 67/115 (58%), Gaps = 15/115 (13%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY++LGV K +S +IKKAYRKLA K+HPD+N D EA +KFKEI+EAYEVLSD +KR
Sbjct: 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKR 58
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFG 143
YD G G+ G ++ FG F D+F +FFG
Sbjct: 59 AQYDQFGHAGF----NGGGGGGGGGFNGFDIGFFGDF---------GDIFGDFFG 100
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in
Prosite are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 111 bits (280), Expect = 3e-32
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY++LGV + +S +IKKAYRKLALK+HPDKNP + A +KFKEI+EAYEVLSD +KR
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGD-PAAEEKFKEINEAYEVLSDPEKR 59
Query: 89 RIYD 92
IYD
Sbjct: 60 AIYD 63
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 115 bits (288), Expect = 2e-30
Identities = 61/142 (42%), Positives = 74/142 (52%), Gaps = 31/142 (21%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYYK+LGVD+ +S DIKKA+R+LA KWHPD +P N++EA +KFKEISEAYEVLSD +KR
Sbjct: 4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR 63
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGF------RFRDPEDVFREFF 142
R YD G DFG F F D D+F + F
Sbjct: 64 RQYDQTGT-----------------------VDFGAGGSNFNWDNFTHFSDINDIFNQIF 100
Query: 143 GS--ASPFNDIFGIRPRNNRGD 162
G S F FG + D
Sbjct: 101 GGNFGSDFFSGFGNQQSTRNID 122
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 103 bits (259), Expect = 5e-29
Identities = 40/59 (67%), Positives = 51/59 (86%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKK 87
DYY++LGV + +S +IKKAYRKLALK+HPDKNP ++ EA +KFKEI+EAYEVLSD +K
Sbjct: 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 110 bits (276), Expect = 2e-28
Identities = 51/132 (38%), Positives = 73/132 (55%), Gaps = 17/132 (12%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY++LGV + ++ +IKKAYR+LA K+HPD N + EA +KFKEI+EAY+VLSD +KR
Sbjct: 4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKR 61
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSASPF 148
++YD G + S + + Q + D F + ED+ + F F
Sbjct: 62 KLYDQFGHAAF--SGSGQQQQGQEGFSD------------FGGGNIEDILEDVFDIFG-F 106
Query: 149 NDIFGIRPRNNR 160
DIFG R
Sbjct: 107 GDIFGRRRATRE 118
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 109 bits (274), Expect = 3e-28
Identities = 52/115 (45%), Positives = 68/115 (59%), Gaps = 18/115 (15%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY++LGV + +S +IKK+YRKLA+K+HPD+NP ++ EA + FKE +EAYEVLSD KKR
Sbjct: 5 DYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDK-EAEELFKEAAEAYEVLSDPKKR 63
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFG 143
IYD G G + G DD F F D+F +FFG
Sbjct: 64 GIYDQYGHEGLSGTGFSGF--------SGFDDIFSSFG---------DIFEDFFG 101
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 108 bits (271), Expect = 1e-27
Identities = 60/129 (46%), Positives = 74/129 (57%), Gaps = 14/129 (10%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY+VLGV + + +IKKAYRKLALK+HPDKNPDN EA + FKE++EAYEVLS++ KR
Sbjct: 4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN-KEAEEHFKEVNEAYEVLSNDDKR 62
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVF----REFFGS 144
R YD G G S G D +D F F+ D+F R GS
Sbjct: 63 RRYDQFGHAGVGSSAASGGGPGYGGGGGDFNDIFSAFN---------DMFGGGARRGGGS 113
Query: 145 ASPFNDIFG 153
F D+FG
Sbjct: 114 PFGFEDVFG 122
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 105 bits (263), Expect = 1e-26
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 7/117 (5%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY++LGVD+ ++ +IKKAYR+LA K+HPD NP ++ EA +KFKEI+EAYE+LSD +KR
Sbjct: 6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDK-EAEQKFKEINEAYEILSDPQKR 64
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDD-DFGGFHRGFRFRDPEDVFREFFGS 144
YD G ++ Q + D DFGGF F ED+F +FFG+
Sbjct: 65 AQYDQFGHAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIF-----EDIFGDFFGT 116
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 102 bits (257), Expect = 8e-26
Identities = 60/138 (43%), Positives = 72/138 (52%), Gaps = 24/138 (17%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY +LGV + +S +IK+AYRKLA + HPD NPD EA +KFKEIS AYEVLSD +KR
Sbjct: 4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKR 61
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSASPF 148
RI D GG D + GGF G F DVF FFG +
Sbjct: 62 RIVD---LGG--DPLESA------------GGGGGGF--GGGFGGLGDVFEAFFGGGAAS 102
Query: 149 NDIFGIRPRNNRGDETQL 166
G R R G ++ L
Sbjct: 103 R---GPRGRVRPGSDSLL 117
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 94.1 bits (235), Expect = 1e-25
Identities = 40/56 (71%), Positives = 47/56 (83%), Gaps = 1/56 (1%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSD 84
DYY +LGV +S +IKKAYRKLALK+HPDKNPD+ EA +KFKEI+EAYEVLSD
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 101 bits (253), Expect = 3e-25
Identities = 46/71 (64%), Positives = 57/71 (80%), Gaps = 1/71 (1%)
Query: 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKK 87
+DYY +LGV K +S +IKKAYRKLA+K+HPDKNP + +EA K+FKE+SEAYEVLSD +K
Sbjct: 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD-AEAEKRFKEVSEAYEVLSDAQK 59
Query: 88 RRIYDDRGKGG 98
R YD GK G
Sbjct: 60 RESYDRYGKDG 70
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 100 bits (252), Expect = 4e-25
Identities = 58/128 (45%), Positives = 71/128 (55%), Gaps = 31/128 (24%)
Query: 26 SMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDE 85
S DYY+VLGV + +S +IKKAYRKLAL++HPD+NPDN EA +KFKE +EAYEVL D
Sbjct: 2 SQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNP-EAEQKFKEAAEAYEVLRDA 60
Query: 86 KKRRIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSA 145
+KR YD G G + GGF F ED+F
Sbjct: 61 EKRARYDRFGHAGV--------------------NGNGGFG---GFSSAEDIF------- 90
Query: 146 SPFNDIFG 153
S F+DIFG
Sbjct: 91 SHFSDIFG 98
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 99 bits (249), Expect = 8e-25
Identities = 55/118 (46%), Positives = 70/118 (59%), Gaps = 19/118 (16%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY++LG+ K +S DIKKAYRKLA+K+HPDKN + +A +KFKEISEAY VLSD +KR
Sbjct: 6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKR 63
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSAS 146
YD G G + +Y ++ D DFGGF D+F FFG
Sbjct: 64 AQYDRFGHAGID-----NQYSAE---DIFRGADFGGF---------GDIFEMFFGGGG 104
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 99.8 bits (249), Expect = 1e-24
Identities = 57/122 (46%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY+VLGV K +S +IKKAYRKL+ K+HPD N + A++KFKEISEAYEVLSD++KR
Sbjct: 5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDIN--KEEGADEKFKEISEAYEVLSDDQKR 62
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSASPF 148
YD + G+ Q DFGG GF F ED+F FFG
Sbjct: 63 AQYD---QFGHAGPNQGFGGGGFG------GGDFGG---GFGF---EDIFSSFFGGGGRR 107
Query: 149 ND 150
D
Sbjct: 108 RD 109
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 98.7 bits (246), Expect = 3e-24
Identities = 54/118 (45%), Positives = 71/118 (60%), Gaps = 20/118 (16%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY+VLG++K +S +IKKA+RKLA+K+HPDKN N+ EA +KFKEI+EAY+VLSD +K+
Sbjct: 5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNK-EAEEKFKEINEAYQVLSDPQKK 63
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDP---EDVFREFFG 143
YD G A ++ GGF GF F D D+F FFG
Sbjct: 64 AQYDQFG---------------TADFNGAGGFGSGGFG-GFDFSDMGGFGDIFDSFFG 105
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 97.2 bits (242), Expect = 8e-24
Identities = 55/138 (39%), Positives = 78/138 (56%), Gaps = 25/138 (18%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY++LGV + ++ +IK+AY++L +WHPD++P+N+ EA +KFKEI EAYEVLSD +KR
Sbjct: 5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKR 64
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSASPF 148
+YD G G + Q + GGF ED+F++F + F
Sbjct: 65 AMYDRFGYVGEQPPYQET-------------ESGGGFF--------EDIFKDF---ENIF 100
Query: 149 N-DIFGIRPRNNRGDETQ 165
N DIF I R E Q
Sbjct: 101 NRDIFDIFFGERRTQEEQ 118
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 96.3 bits (240), Expect = 2e-23
Identities = 50/115 (43%), Positives = 62/115 (53%), Gaps = 14/115 (12%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
+YY LGV K +S +IKKAYRKL+ K+HPD N + A +K+KE+ EAYE LSD +KR
Sbjct: 5 EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDIN--KEPGAEEKYKEVQEAYETLSDPQKR 62
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFG 143
YD G G G + A FGGF F ED+F FFG
Sbjct: 63 AAYDQYGAAG-----ANGGFGGGAG-------GFGGFDGSGGFGGFEDIFSSFFG 105
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 96.0 bits (239), Expect = 2e-23
Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 11/118 (9%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY+VLGVD+ + +IKKAYRKLA K+HPD + + A +KFKEISEAY VLSD++KR
Sbjct: 6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKR 63
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSAS 146
+ YD G G + Q + + + +D F GF GF + D+F FG S
Sbjct: 64 QRYDQFGHAGMDGFSQEDIFN-----NINFEDIFQGF--GFGIGNIFDMFG--FGGGS 112
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 96.1 bits (239), Expect = 3e-23
Identities = 49/105 (46%), Positives = 65/105 (61%), Gaps = 5/105 (4%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY+VLGV K ++ +IKKAYRK A+++HPDKNP ++ EA +KFKE +EAY+VLSD KR
Sbjct: 6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDK-EAEEKFKEAAEAYDVLSDPDKR 64
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDD----HDDDFGGFHRGF 129
YD G G + G + + +D D FGG GF
Sbjct: 65 SRYDQFGHAGVGGAAGGGGFSGEGMSMEDIFSMFGDIFGGHGGGF 109
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 95.3 bits (237), Expect = 5e-23
Identities = 51/104 (49%), Positives = 68/104 (65%), Gaps = 8/104 (7%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYYKVLGV K ++ +IKKAYRKLA ++HPD N + ++A ++FKEISEAY+VLSDEKKR
Sbjct: 10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-AKAEERFKEISEAYDVLSDEKKR 68
Query: 89 RIYDDR----GKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRG 128
+ YD+ G GG+ R ++ D D FGG +G
Sbjct: 69 KEYDEARSLFGNGGF---RPGPGGGGGGGFNFDLGDLFGGGAQG 109
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 95.0 bits (236), Expect = 6e-23
Identities = 59/142 (41%), Positives = 77/142 (54%), Gaps = 25/142 (17%)
Query: 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEK 86
M+DYY++LGV + +S +IK AYRKLALK+HPD+N + A +KF +I+EAY VLSD +
Sbjct: 1 MMDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAE 58
Query: 87 KRRIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSAS 146
KR YD R+ + D FGG GF DP D+F + FG A
Sbjct: 59 KRAHYD--------------RFGTAPGAGMPGGDPFGGM--GF---DPMDIFEQLFGGAG 99
Query: 147 PFNDIFGIRPRNNRGD--ETQL 166
F G R RGD ET+
Sbjct: 100 -FGGGRGRR-GPARGDDLETEA 119
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 92.2 bits (229), Expect = 1e-21
Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 5/75 (6%)
Query: 30 YYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRR 89
Y+VL + K +T +IKKAYRKLA+K HPDK D + KFKEIS AYEVLSD +KR+
Sbjct: 30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPE-----KFKEISRAYEVLSDPEKRK 84
Query: 90 IYDDRGKGGYEDSRQ 104
IYD+ G+ G E Q
Sbjct: 85 IYDEYGEEGLEGGEQ 99
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 91.3 bits (227), Expect = 2e-21
Identities = 64/205 (31%), Positives = 85/205 (41%), Gaps = 60/205 (29%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
D+YK LGV +S +IKKAYRKLA + HPD NP + + A ++FK +SEA++VLSD KR
Sbjct: 10 DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPA-AEERFKAVSEAHDVLSDPAKR 68
Query: 89 RIYDDR----GKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGS 144
+ YD+ GG+ R G FGGF G EF
Sbjct: 69 KEYDETRRLFAGGGFGGRRFDG------------GGGFGGFGTG-------GDGAEF--- 106
Query: 145 ASPFNDIFGIRPRNNRGDETQLFHTGPLGFHNLGDIFSHSDAFSSFGGFDFNSSGRGGAA 204
ND+F G G +GD+ FGG FN G
Sbjct: 107 --NLNDLFD--------------AAGRGGGGGIGDL---------FGGL-FNRGGGSARP 140
Query: 205 VK-------TTSTSTRFIDGKKVTT 222
+ T T+ F++ K T
Sbjct: 141 SRPRRGNDLETETTLDFVEAAKGVT 165
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 88.7 bits (219), Expect = 2e-21
Identities = 46/118 (38%), Positives = 62/118 (52%)
Query: 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEK 86
+LDYY++LGV +S +IKKAYRKLALK+HPD+NP + A +KFKEI+EAYE+LSD +
Sbjct: 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPE 64
Query: 87 KRRIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGS 144
+R YD G Y + + RG R + S
Sbjct: 65 RRAEYDKIGADNYFPGKSYRESAAFPIEGSLQLTGLYEEWRGKRNKTERKASLADLLS 122
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 88.1 bits (218), Expect = 9e-21
Identities = 57/135 (42%), Positives = 70/135 (51%), Gaps = 15/135 (11%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY +LGV K +S +IKKA++KLA K+HPD N A +KFKEI+EAY VLSD +KR
Sbjct: 5 DYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKR 62
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFF---GSA 145
RIYD G Q DF GF+ G D D F++ F G
Sbjct: 63 RIYDTYGTTAASAGWQGPPPGPPGGG------DFSGFNVG----DFSDFFQQLFGGRGGF 112
Query: 146 SPFNDIFGIRPRNNR 160
F D+FG R R
Sbjct: 113 GGFGDLFGSVGRRAR 127
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 88.1 bits (218), Expect = 2e-20
Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY++LGV K +S D+KKAY KLA ++HPD + +A KKFKEI+ AY+VL DE+KR
Sbjct: 4 DYYQILGVSKTASQADLKKAYLKLAKQYHPDTT--DAKDAEKKFKEINAAYDVLKDEQKR 61
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGF 129
YD G +++ + RG + + D +D FG F F
Sbjct: 62 AAYDRFGHDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDF 102
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 87.0 bits (215), Expect = 4e-20
Identities = 56/134 (41%), Positives = 73/134 (54%), Gaps = 14/134 (10%)
Query: 30 YYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRR 89
YY +LGV K ++ +IK AYRKLA+K+HPDKN N+ E+ +KFKE +EAYE+L D KKR+
Sbjct: 6 YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNK-ESEEKFKEATEAYEILRDPKKRQ 64
Query: 90 IYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSASPFN 149
YD GK G + G + A D D FG F D+F +FFG
Sbjct: 65 AYDQFGKAGV--NAGAGGFGQGAY--TDFSDIFGDFG---------DIFGDFFGGGRGGG 111
Query: 150 DIFGIRPRNNRGDE 163
G R RG +
Sbjct: 112 SGGGRRSGPQRGSD 125
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 85.8 bits (213), Expect = 1e-19
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 22/117 (18%)
Query: 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEK 86
DYY++LGV + + ++K+AYR+LA K+HPD N + +E +FKEI+ AYEVLSD +
Sbjct: 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAE--DRFKEINRAYEVLSDPE 59
Query: 87 KRRIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFG 143
R YD G+ G + A + D D GGF D+F FF
Sbjct: 60 TRARYDQFGEAGVSGA---------AGFPD--MGDMGGF---------ADIFETFFS 96
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 85.4 bits (211), Expect = 2e-19
Identities = 51/119 (42%), Positives = 64/119 (53%), Gaps = 23/119 (19%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY++LG+ K +S +IKKAYRK+A+K+HPDKN N+ EA FKE +EAYEVL D+ KR
Sbjct: 4 DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNK-EAESIFKEATEAYEVLIDDNKR 62
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFR-----FRDPEDVFREFF 142
YD G +E F GF GF F D D+F FF
Sbjct: 63 AQYDRFGHTAFEGG-----------------GGFEGFSGGFSGFSDIFEDFGDIFDSFF 104
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 82.0 bits (202), Expect = 3e-18
Identities = 50/104 (48%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKK 87
L YY++L V+K S+ IKK+YRKLALK+HPD+N ++ EA +KFK I+EAY VLSDEKK
Sbjct: 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDK-EAEEKFKLINEAYGVLSDEKK 61
Query: 88 RRIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRF 131
R +YD GK G + SQ+ + D +D F F F
Sbjct: 62 RALYDRYGKKGLNQAGA-----SQSDFSDFFEDLGSFFEDAFGF 100
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 79.6 bits (196), Expect = 2e-17
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 21/122 (17%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY+VLGV K +S +I++AYRKLA ++HPD N +A+ K EI+EA +VL D+ KR
Sbjct: 5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLN--KSPDAHDKMVEINEAADVLLDKDKR 62
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFR------FRDPEDVFREFF 142
+ YD G ++ S +FG F F F ++F +FF
Sbjct: 63 KQYDQFGHAAFDGSSGFS-------------SNFGDFEDLFSNMGSSGFSSFTNIFSDFF 109
Query: 143 GS 144
GS
Sbjct: 110 GS 111
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 78.7 bits (194), Expect = 2e-17
Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 8/101 (7%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY ++GV IK AYR+LA K+HPD + + +EA +FKE++EA+EVLSDE++R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEA--RFKEVAEAWEVLSDEQRR 62
Query: 89 RIYDD----RGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGF 125
YD R + +RQ Q+ +D DD F
Sbjct: 63 AEYDQLWQHRNDPQF--NRQFQHGDGQSFNAEDFDDIFSSI 101
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 79.5 bits (195), Expect = 4e-17
Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY+VLG+D+ + +IKKA+RKLA K+HPD+N +A F EI+EA +VLS+ KKR
Sbjct: 3 DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRN--KAPDAASIFAEINEANDVLSNPKKR 60
Query: 89 RIYDDRGKGG 98
YD G G
Sbjct: 61 ANYDKYGHDG 70
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 75.0 bits (184), Expect = 8e-16
Identities = 50/118 (42%), Positives = 65/118 (55%), Gaps = 22/118 (18%)
Query: 26 SMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDE 85
S DYY+VLGVD+ +S ++KKAYRKLA K+HPD N +E KFKE+ EAY+ LSD
Sbjct: 2 SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAED--KFKEVKEAYDTLSDP 59
Query: 86 KKRRIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFG 143
+K+ YD + G+ D Q + DFGGF D+F FFG
Sbjct: 60 QKKAHYD---QFGHTDPNQ--------GFGGGGAGDFGGF---------SDIFDMFFG 97
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 71.1 bits (174), Expect = 2e-14
Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 7/80 (8%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDK----NPDNQSEANKKFKEISEAYEVLSD 84
D Y++LG+D+ +S DIKK YR L++K+HPDK + +SE +K+K I++AY +L+D
Sbjct: 99 DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTD 158
Query: 85 EKKRRIYDDRGKGGYEDSRQ 104
+K+R Y G DS Q
Sbjct: 159 KKRRENY---LNYGTPDSPQ 175
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 53.7 bits (130), Expect = 1e-08
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 13 QSSTGDIKKASHSSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDK------NPDNQS 66
Q G + ++ D YKVLGV + +IK+AYRKL + HPDK P+
Sbjct: 185 QGGGGYQQAQRGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMME 244
Query: 67 EANKKFKEISEAYEVLSDEKKRR 89
A +K +EI AYE++ +K +
Sbjct: 245 MAKEKAQEIQAAYELIKKQKGFK 267
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 50.6 bits (120), Expect = 3e-07
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 30 YYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRR 89
+Y +LGV + +I + Y KLA ++P K + +E KFK+I+EAY++L D K++
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKR--SGNEGFHKFKKINEAYQILGDIDKKK 632
Query: 90 IYDDRGKGG 98
+Y+ G G
Sbjct: 633 MYNKFGYDG 641
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 48.1 bits (114), Expect = 1e-06
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 29 DYYKVLGVDK---QSSTGDIKKAYRKLALKWHPDKNPDNQSEANKK-FKEISEAYEVLSD 84
D Y +LG+ K ++ I KA++K K+HPDK ++ + FK I +A EVL D
Sbjct: 44 DLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGD 103
Query: 85 EKKRRIYD 92
K R YD
Sbjct: 104 RKLRLQYD 111
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 40.0 bits (94), Expect = 7e-04
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 43 GDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYEDS 102
++KAY + ++HPDK D + K K ++ Y+ L + + R G +DS
Sbjct: 28 PLMRKAYLRKCKEYHPDKGGDEE-----KMKRLNSLYKKLQEG----VKSARQSFGTQDS 78
Query: 103 RQRGRYRS 110
+ Y +
Sbjct: 79 SEIPTYGT 86
>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed.
Length = 153
Score = 38.5 bits (90), Expect = 8e-04
Identities = 19/102 (18%), Positives = 29/102 (28%), Gaps = 33/102 (32%)
Query: 43 GDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYEDS 102
++KAY + L++HPDK D + K KE++ Y+ + K
Sbjct: 22 PLMRKAYLRKCLEFHPDKGGDEE-----KMKELNTLYKKFRESVKSL------------- 63
Query: 103 RQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGS 144
D D P FG
Sbjct: 64 ---------------RDLDGEEDSSSEEEDVPSGYVGATFGD 90
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational
modification, protein turnover, chaperones].
Length = 174
Score = 38.1 bits (89), Expect = 0.001
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 28 LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDN------QSEANKKFKEISEAYE 80
D KVLGV+ ++ IKKAYRKL + HPDK + +K +EI EAYE
Sbjct: 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYE 171
Score = 29.2 bits (66), Expect = 1.0
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 45 IKKAYRKLALKWHPDKNPDNQSEANKK-----FKEISEAYEVLSDEKKRRIY 91
+K YR+L +HPD SEA ++ E++ AY+ L D R Y
Sbjct: 20 LKLQYRELQRAYHPD-RFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEY 70
>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional.
Length = 166
Score = 36.4 bits (84), Expect = 0.005
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 27 MLDYYKVLGVDKQSSTG--DIKKAYRKLALKWHPDKNPDNQSEANKKF---KEISEAYEV 81
M +Y+++LG+ ++ + ++K Y + +K+HPDK E + E++ AY
Sbjct: 1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDK-AKTLQEKEQNLIIASELNNAYST 59
Query: 82 LSDEKKRRIY 91
L D KR Y
Sbjct: 60 LKDALKRAEY 69
>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat
shock cognate protein) of a pair of proteins
Hsc66-Hsc20, related to the DnaK-DnaJ heat shock
proteins, which also serve as molecular chaperones.
Hsc20, unlike DnaJ, appears not to have chaperone
activity on its own, but to act solely as a regulatory
subunit for Hsc66 (i.e., to be a co-chaperone). The
gene for Hsc20 in E. coli, hscB, is not induced by heat
shock [Protein fate, Protein folding and
stabilization].
Length = 155
Score = 32.5 bits (74), Expect = 0.079
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 39 QSSTGDIKKAYRKLALKWHPD--KNPDNQSEANKKFKEISEAYEVLSDEKKRRIY 91
Q ++K YR+L ++HPD Q A+++ +++AY L D +R Y
Sbjct: 2 QLDQSRLRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56
>gnl|CDD|153305 cd07621, BAR_SNX5_6, The Bin/Amphiphysin/Rvs (BAR) domain of
Sorting Nexins 5 and 6. BAR domains are dimerization,
lipid binding and curvature sensing modules found in
many different proteins with diverse functions. Sorting
nexins (SNXs) are Phox homology (PX) domain containing
proteins that are involved in regulating membrane
traffic and protein sorting in the endosomal system.
SNXs differ from each other in their lipid-binding
specificity, subcellular localization and specific
function in the endocytic pathway. A subset of SNXs also
contain BAR domains. The PX-BAR structural unit
determines the specific membrane targeting of SNXs.
Members of this subfamily include SNX5, SNX6, the
mammalian SNX32, and similar proteins. SNX5 and SNX6 may
be components of the retromer complex, a membrane coat
multimeric complex required for endosomal retrieval of
lysosomal hydrolase receptors to the Golgi, acting as a
mammalian equivalent of yeast Vsp17p. The function of
SNX32 is still unknown. BAR domains form dimers that
bind to membranes, induce membrane bending and
curvature, and may also be involved in protein-protein
interactions.
Length = 219
Score = 31.5 bits (72), Expect = 0.25
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 63 DNQSEANKKFKEISE-AYEVLSDEKKRRI 90
Q EA +KF+ +SE A + L D K RR+
Sbjct: 158 AAQQEACEKFESMSESAKQELLDFKTRRV 186
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 30.6 bits (70), Expect = 0.66
Identities = 11/46 (23%), Positives = 15/46 (32%)
Query: 91 YDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPED 136
R + + R D D + G RG RFRD +
Sbjct: 226 RRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDR 271
>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.
Length = 116
Score = 29.0 bits (65), Expect = 0.84
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 26 SMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPD 59
S + YK+L + +S I++A+++L L+ HPD
Sbjct: 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPD 96
>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 29.4 bits (66), Expect = 0.91
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 49 YRKLALKWHPDKNPD----NQSEANKKFKEISEAYEVLSDEKKRRIY 91
YR+LA + HPD+ D Q A ++ ++EAY+ L +R Y
Sbjct: 27 YRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARY 73
>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional.
Length = 176
Score = 28.8 bits (65), Expect = 1.5
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 48 AYRKLALKWHPDKNPDNQSEANKKFK-----EISEAYEVLSDEKKRRIY 91
AYR + + HPD+ +A K+ +EAY+ L D KR Y
Sbjct: 28 AYRTVQAQVHPDRFA-AAGDAEKRVAMQWATRANEAYQTLRDPLKRARY 75
>gnl|CDD|226185 COG3659, OprB, Carbohydrate-selective porin [Cell envelope
biogenesis, outer membrane].
Length = 439
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 167 FHTGPLGFHNLGDIFSHSDAFSSFGGFDFNSSGRGGAAVKTTSTSTRFIDG 217
++T P + +G ++ D ++ G+DF+ G GA + +
Sbjct: 205 YNTAPGLYVQVGAYEANPDNLATPNGWDFSGDGTKGALLPLELGWQPKVGA 255
>gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme.
Length = 758
Score = 28.5 bits (64), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 161 GDETQLFHTGPLGFHNLGD 179
G + FH+GP G+H L D
Sbjct: 338 GTDGSYFHSGPRGYHWLWD 356
>gnl|CDD|226533 COG4047, COG4047, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 243
Score = 27.5 bits (61), Expect = 5.4
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 125 FHRGFRFRDPEDVFREF--FGSASPFNDIFGIRPRNNR 160
F + FR R+ D++R + F S FN I + R
Sbjct: 66 FAKYFRGREVRDIYRAYKEFLPNSRFNRR-LIEQKLRR 102
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 27.7 bits (62), Expect = 6.3
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 19 IKKASHSSMLDYYKVLGVDK-QSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISE 77
+K+A +LG+D GD+ R+ P + KE SE
Sbjct: 171 LKEAIEV-------LLGLDLIDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSE 223
Query: 78 AYEVLSDEKK 87
YE L+ E
Sbjct: 224 KYEDLAQEIA 233
>gnl|CDD|239155 cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA
(Nitrate-R-NapA), NasA, and NarB catalyze the reduction
of nitrate to nitrite. Monomeric Nas is located in the
cytoplasm and participates in nitrogen assimilation.
Dimeric Nap is located in the periplasm and is coupled
to quinol oxidation via a membrane-anchored tetraheme
cytochrome. Members of the MopB_Nitrate-R-NapA CD belong
to the molybdopterin_binding (MopB) superfamily of
proteins.
Length = 565
Score = 27.6 bits (62), Expect = 6.5
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 124 GFHRGFRFRDPEDVFREF--FGSASPFNDIFGI 154
GF F + PE+VF E+ D+ G+
Sbjct: 486 GFGELFPYTSPEEVFEEYRRLSRGRGA-DLSGL 517
>gnl|CDD|202203 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA-binding
domain. This family contains the transcription factor
E2F and its dimerisation partners TDP1 and TDP2, which
stimulate E2F-dependent transcription. E2F binds to DNA
as a homodimer or as a heterodimer in association with
TDP1/2, the heterodimer having increased binding
efficiency. The crystal structure of an E2F4-DP2-DNA
complex shows that the DNA-binding domains of the E2F
and DP proteins both have a fold related to the
winged-helix DNA-binding motif. Recognition of the
central c/gGCGCg/c sequence of the consensus
DNA-binding site is symmetric, and amino acids that
contact these bases are conserved among all known E2F
and DP proteins.
Length = 67
Score = 25.6 bits (57), Expect = 7.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 75 ISEAYEVLSDEKKRRIYD 92
++EA + L ++KRRIYD
Sbjct: 27 LNEAAKELDVKQKRRIYD 44
>gnl|CDD|132675 TIGR03636, L23_arch, archaeal ribosomal protein L23. This model
describes the archaeal ribosomal protein L23P and
rigorously excludes the bacterial counterpart L23. In
order to capture every known instance of archaeal L23P,
the trusted cutoff is set lower than a few of the
highest scoring eukaryotic cytosolic ribosomal
counterparts [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 77
Score = 25.6 bits (57), Expect = 7.6
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 10 VDKQSSTGDIKKASHSSMLDYYKVLGVDKQSSTGDIKKAYRKLA 53
VD++++ GDIK+A L KV V+ + KKAY KLA
Sbjct: 21 VDRKATKGDIKRAVEK--LFDVKVEKVNTLITPRGEKKAYVKLA 62
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 27.3 bits (60), Expect = 8.3
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 79 YEVLSDEKKRRIYDDRGKGGYEDSRQRG 106
+E L++EKKR+IYDD+ +D++ +
Sbjct: 476 HEKLNEEKKRKIYDDKDSPEDKDNKGKD 503
>gnl|CDD|66448 pfam02763, Diphtheria_C, Diphtheria toxin, C domain. N-terminal
catalytic (C) domain - blocks protein synthesis by
transfer of ADP-ribose from NAD to a diphthamide residue
of EF-2.
Length = 187
Score = 26.7 bits (58), Expect = 9.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 96 KGGYEDSRQRGRYRSQAKYDDDHDDDFGGFH 126
K GY DS Q+G + ++ ++DDD+ GF+
Sbjct: 24 KPGYVDSIQKGIQKPKSGTQGNYDDDWKGFY 54
>gnl|CDD|197201 cd09102, PLDc_CDP-OH_P_transf_II_1, Catalytic domain, repeat 1, of
CDP-alcohol phosphatidyltransferase class-II family
members. Catalytic domain, repeat 1, of CDP-alcohol
phosphatidyltransferase class-II family members, which
mainly include gram-negative bacterial
phosphatidylserine synthases (PSS;
CDP-diacylglycerol--serine O-phosphatidyltransferase, EC
2.7.8.8), yeast phosphatidylglycerophosphate synthase
(PGP synthase; CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase, EC 2.7.8.5), and metazoan PGP
synthase 1. All members in this subfamily have two HKD
motifs (H-x-K-x(4)-D, where x represents any amino acid
residue) that characterize the phospholipase D (PLD)
superfamily. They may utilize a common two-step
ping-pong catalytic mechanism, involving a
substrate-enzyme intermediate, to cleave phosphodiester
bonds. The two motifs are suggested to constitute the
active site involving phosphatidyl group transfer.
Phosphatidylserine synthases from gram-positive bacteria
and eukaryotes, and prokaryotic
phosphatidylglycerophosphate synthases are not members
of this subfamily.
Length = 168
Score = 26.4 bits (58), Expect = 9.9
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 104 QRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSASPFNDIFGI 154
QR + D + + + D FFG N++FG+
Sbjct: 68 QRNL-LGSETKSATNADWYCEQRQTSQLHLLPDDGNXFFGVPINTNEVFGV 117
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.401
Gapped
Lambda K H
0.267 0.0793 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,038,471
Number of extensions: 1165033
Number of successful extensions: 1402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1340
Number of HSP's successfully gapped: 84
Length of query: 230
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 136
Effective length of database: 6,768,326
Effective search space: 920492336
Effective search space used: 920492336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)