RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13284
(230 letters)
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 131 bits (333), Expect = 3e-40
Identities = 49/80 (61%), Positives = 62/80 (77%)
Query: 21 KASHSSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYE 80
+ S M+DYY+VL V +Q+S+ IKKAYRKLALKWHPDKNP+N+ EA ++FK+++EAYE
Sbjct: 2 SSGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYE 61
Query: 81 VLSDEKKRRIYDDRGKGGYE 100
VLSD KKR IYD G G
Sbjct: 62 VLSDAKKRDIYDRYGSGPSS 81
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix
motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 130 bits (328), Expect = 2e-39
Identities = 51/90 (56%), Positives = 60/90 (66%)
Query: 21 KASHSSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYE 80
+ S M +YY+VLGV +S DIKKAYRKLAL+WHPDKNPDN+ EA KKFK +SEAYE
Sbjct: 2 SSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYE 61
Query: 81 VLSDEKKRRIYDDRGKGGYEDSRQRGRYRS 110
VLSD KKR +YD G + S
Sbjct: 62 VLSDSKKRSLYDRAGCDSWRAGGGASGPSS 91
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 132 bits (333), Expect = 1e-38
Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Query: 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEK 86
+ ++Y +LGV K +S+ +I++A++KLALK HPDKNP+N A+ F +I+ AYEVL DE
Sbjct: 1 IQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP-NAHGDFLKINRAYEVLKDED 59
Query: 87 KRRIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSAS 146
R+ YD G+ G ED+ Q G+Y S + Y D R F S
Sbjct: 60 LRKKYDKYGEKGLEDN-QGGQYESWSYYRYDFGIYDDDPEIITLERRE---FDAAVNSGE 115
Query: 147 PFNDIF 152
+ F
Sbjct: 116 LWFVNF 121
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 135 bits (342), Expect = 1e-38
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 21/136 (15%)
Query: 26 SMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDE 85
+ DYY +LGV IK AYR+LA K+HPD + +N +EA KFK+++EA+EVL DE
Sbjct: 26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEA--KFKDLAEAWEVLKDE 83
Query: 86 KKRRIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSA 145
++R YD + + R + + +D +D+F FG
Sbjct: 84 QRRAEYDQLWQHRNDPGFGRQ---------------RQTHEQSYSQQDFDDIFSSMFGQQ 128
Query: 146 SPFNDIFGIRPRNNRG 161
+ R RG
Sbjct: 129 AH----QRRRQHAARG 140
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 127 bits (320), Expect = 4e-38
Identities = 47/106 (44%), Positives = 60/106 (56%), Gaps = 11/106 (10%)
Query: 27 MLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEK 86
M YY++L V + +S DIKKAYR+ AL+WHPDKNPDN+ A KKFKE++EAYEVLSD+
Sbjct: 1 MASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKH 60
Query: 87 KRRIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFR 132
KR IYD G+ G + + G G
Sbjct: 61 KREIYDRYGREGLTGTGTGP-----------SRAEAGSGGPGLEHH 95
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 119 bits (300), Expect = 2e-35
Identities = 38/74 (51%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY+ LG+ + +S +IK+AYR+ AL++HPDKN + A +KFKEI+EAY+VLSD +KR
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE--PGAEEKFKEIAEAYDVLSDPRKR 61
Query: 89 RIYDDRGKGGYEDS 102
I+D G+ G + S
Sbjct: 62 EIFDRYGEEGLKGS 75
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 121 bits (304), Expect = 5e-35
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 8/109 (7%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQS-----EANKKFKEISEAYEVLS 83
D+Y +LG D ++ D+K+ Y+KL L +HPDK + E +KF EI +A+++L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 84 DEKKRRIYDDRGKGGYEDSRQRGRYRSQAKYDD-DHDDDFGGFHRGFRF 131
+E+ +R YD + +D R G +Q ++ ++ F+ R
Sbjct: 71 NEETKREYDL--QRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRC 117
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 119 bits (299), Expect = 8e-35
Identities = 44/78 (56%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
Y VLG+DK +++ DIKK+YRKLALK+HPDKNPDN EA KFKEI+ A+ +L+D KR
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNP-EAADKFKEINNAHAILTDATKR 76
Query: 89 RIYDDRGKGGYEDSRQRG 106
IYD G G + Q G
Sbjct: 77 NIYDKYGSLGLYVAEQFG 94
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 114 bits (287), Expect = 2e-33
Identities = 42/68 (61%), Positives = 53/68 (77%), Gaps = 4/68 (5%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
YY VLGV +S ++KKAYRK+ALK+HPDKNPD ++FK+IS+AYEVLSDEKKR
Sbjct: 9 GYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD----GAEQFKQISQAYEVLSDEKKR 64
Query: 89 RIYDDRGK 96
+IYD G+
Sbjct: 65 QIYDQGGE 72
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 114 bits (288), Expect = 2e-33
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 25 SSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSD 84
S + + V+ + + KK R+L LKWHPDKNP+N AN+ FK + L
Sbjct: 13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE- 71
Query: 85 EKKRRIYDDRGKGGYEDS 102
K+ D +
Sbjct: 72 --KQAFLDQNADRASRRT 87
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 114 bits (287), Expect = 3e-33
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQS-----EANKKFKEISEAYEVLS 83
D+Y +LG D ++ D+K+ Y+KL L +HPDK + E +KF EI +A+++L
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 84 DEKKRRIYDDRGKGGYE 100
+E+ ++ YD + G
Sbjct: 77 NEETKKKYDLQRSGPSS 93
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 114 bits (288), Expect = 4e-33
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 9 GVDKQSSTGDIKKASHSSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEA 68
G S I DYY +LG D+ SS I ++ AL+ HPDK+P+N +A
Sbjct: 1 GSSGSSGMDAILNYRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENP-KA 59
Query: 69 NKKFKEISEAYEVLSDEKKRRIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGF 125
+ F+++ +A E+L++E+ R YD + Q Q + +D G
Sbjct: 60 VETFQKLQKAKEILTNEESRARYDHWRRSQMSMPFQ------QWEALNDSVKTSGPS 110
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 113 bits (284), Expect = 8e-33
Identities = 38/72 (52%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY++LGV + +S +IKKAY +LA K+HPD N D+ +A +KF +++EAYEVLSDE KR
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP-KAKEKFSQLAEAYEVLSDEVKR 66
Query: 89 RIYDDRGKGGYE 100
+ YD G G
Sbjct: 67 KQYDAYGSGPSS 78
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 113 bits (284), Expect = 2e-32
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 26 SMLDYYKVLGVDKQSSTGD-IKKAYRKLALKWHPDKNPDN--QSEANKKFKEISEAYEVL 82
+ + Y VL V+++ + KAYR LA K HPD+ + + A ++F+ I+ AYE L
Sbjct: 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETL 72
Query: 83 SDEKKRRIYD---DRGKGGYEDSRQRGRYRSQAKYD 115
D++ + YD D + + Q R R+ K D
Sbjct: 73 KDDEAKTNYDYYLDHPDQRFYNYYQYYRLRAAPKVD 108
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 112 bits (282), Expect = 2e-32
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
Y +LGV ++ IK AY + +HPD+N + EA ++F IS+AY VL R
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSA-EAAERFTRISQAYVVLGSATLR 76
Query: 89 RIYDDRGKGGYE 100
R YD +
Sbjct: 77 RKYDRGLLSDED 88
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular
chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 112 bits (281), Expect = 3e-32
Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 14 SSTGDIKKASHSSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFK 73
S + I ++ + D Y+VLGV + +S DIKKAY+KLA +WHPDKN D A +F
Sbjct: 3 SGSSGILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD--PGAEDRFI 60
Query: 74 EISEAYEVLSDEKKRRIYDDRGKGGYE 100
+IS+AYE+LS+E+KR YD G G
Sbjct: 61 QISKAYEILSNEEKRTNYDHYGSGPSS 87
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 112 bits (282), Expect = 3e-32
Identities = 48/125 (38%), Positives = 65/125 (52%), Gaps = 26/125 (20%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY++LGV K + +I+KAY++LA+K+HPD+N ++ EA KFKEI EAYEVL+D +KR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQKR 62
Query: 89 RIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSASPF 148
YD G +E G D D+F + FG
Sbjct: 63 AAYDQYGHAAFEQG-------------------GMGGGGFGGGADFSDIFGDVFG----- 98
Query: 149 NDIFG 153
DIFG
Sbjct: 99 -DIFG 102
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 78
Score = 111 bits (279), Expect = 4e-32
Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY++LGV + +S D+KKAYR+LALK+HPDKN A + FK I AY VLS+ +KR
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAP--GATEAFKAIGTAYAVLSNPEKR 65
Query: 89 RIYDDRGKGGYE 100
+ YD G G
Sbjct: 66 KQYDQFGSGPSS 77
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 110 bits (277), Expect = 1e-31
Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
YY +LGV K +S IKKA+ KLA+K+HPDKN +A KF+EI+EAYE LSD +R
Sbjct: 8 SYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS--PDAEAKFREIAEAYETLSDANRR 65
Query: 89 RIYDDRGKGGYEDSRQRGRYRS 110
+ YD G + + + S
Sbjct: 66 KEYDTLGHSAFTSGKGQSGPSS 87
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural
genomics, PSI-2, protein structure initiative; 1.25A
{Saccharomyces cerevisiae}
Length = 92
Score = 110 bits (277), Expect = 1e-31
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
Y +LGV ++ ++KK YRK ALK+HPDK + +KFKEISEA+E+L+D +KR
Sbjct: 9 KLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT----EKFKEISEAFEILNDPQKR 64
Query: 89 RIYDDRGKGGYE 100
IYD G
Sbjct: 65 EIYDQYGLEAAR 76
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 101 bits (253), Expect = 4e-28
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
D + +LGV +S ++ KAYRKLA+ HPDK SE FK + A L K
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSED--AFKAVVNARTALLKNIKS 85
Query: 89 RIYD 92
Sbjct: 86 GPSS 89
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 103 bits (257), Expect = 1e-27
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 20 KKASHSSMLDYYKVLGVDKQ--SSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISE 77
K + L +LG+++ + ++KAY K ++HPDK D + K K+++
Sbjct: 3 KVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE-----KMKKMNT 57
Query: 78 AYEVLSDEKKRRIYDDRGKGG 98
Y+ + D K D G
Sbjct: 58 LYKKMEDGVKYAHQPDFGGFW 78
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 108 bits (271), Expect = 2e-27
Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
++Y +LGV K +S+ +I++A++KLALK HPDKNP+N A+ F +I+ AYEVL DE R
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP-NAHGDFLKINRAYEVLKDEDLR 80
Query: 89 RIYDDRG-------KGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFREF 141
+ YD G +GG +S RY DD E F F
Sbjct: 81 KKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNF 140
Query: 142 F 142
+
Sbjct: 141 Y 141
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 102 bits (257), Expect = 1e-25
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDK--NPDNQSEANKKFKEISEAYEVLSDEK 86
DYYK+LGV + + +I KAYRKLAL+WHPD N + + +A KKF +I+ A EVLSD +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 87 KRRIYD 92
R+ +D
Sbjct: 443 MRKKFD 448
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 93.0 bits (231), Expect = 1e-24
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 18/107 (16%)
Query: 29 DYYKVLGVDK--QSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEK 86
+LG+++ + ++KAY K ++HPDK D + K K+++ Y+ + D
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE-----KMKKMNTLYKKMEDGV 63
Query: 87 KRRIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRD 133
K D G D++ + F +
Sbjct: 64 KYAHQPDFGGFWDATEIPTYG-----------TDEWEQWWNAFNEEN 99
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 81.0 bits (199), Expect = 3e-19
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSE--ANKKFKEISEAYEVLSDEK 86
+K +G+ + +KK YRK L HPDK E A F E+++A+ ++
Sbjct: 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 177
Query: 87 KRRIY 91
++ +Y
Sbjct: 178 QKPLY 182
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 79.2 bits (195), Expect = 1e-18
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 25 SSMLDYYKVLGVDKQSS--TGDIKKAYRKLALKWHPDKNPDN----QSEANKKFKEISEA 78
S+ ++Y+++ G+ Q + +R L ++HPD + A ++ +I++A
Sbjct: 1 SNAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDA 60
Query: 79 YEVLSDEKKRRIYDDRGKG 97
Y+ L D +R Y +G
Sbjct: 61 YQTLKDPLRRAEYLLSLQG 79
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 77.3 bits (190), Expect = 5e-18
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 28 LDYYKVLGVDKQSS--TGDIKKAYRKLALKWHPDKNPDN----QSEANKKFKEISEAYEV 81
+DY+ + G+ + T + ++ L ++HPDK Q A ++ I++A++
Sbjct: 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60
Query: 82 LSDEKKRRIYDDRGKG 97
L R Y G
Sbjct: 61 LRHPLMRAEYLLSLHG 76
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 68.8 bits (168), Expect = 8e-16
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 23 SHSSMLDYYKVLGVDKQ--SSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYE 80
S + ++L + +Q G +++AY++ +L HPDK + +E++ +
Sbjct: 6 SRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHA-----LMQELNSLWG 60
Query: 81 VLSDEKKRRIYDDRGKG 97
E + G G
Sbjct: 61 TFKTEVYNLRMNLGGTG 77
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 70.0 bits (171), Expect = 3e-15
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 25 SSMLDYYKVLGVDKQS-------STGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISE 77
+Y++ ++K YR+L + HPD +++ +++
Sbjct: 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ----GSEQSSTLNQ 63
Query: 78 AYEVLSDEKKRRIYDDRGKGGYE 100
AY L D +R Y + +
Sbjct: 64 AYHTLKDPLRRSQYMLKLLRNID 86
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 65.0 bits (158), Expect = 3e-14
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 31 YKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSE--ANKKFKEISEAYEVLSDE 85
+K +G+ + +KK YRK L HP K E A F E+++A+ ++
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFENQ 92
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 67.8 bits (165), Expect = 4e-14
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 25 SSMLDYYKVLGVDKQS--STGDIKKAYRKLALKWHPDKNPDN----QSEANKKFKEISEA 78
DY+ ++ ++ T ++ Y++L HPD + + K +++A
Sbjct: 40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDA 99
Query: 79 YEVLSDEKKRRIYDDRGKGGYEDSRQR 105
Y+ L R +Y + G R
Sbjct: 100 YKTLLAPLSRGLYLLKLHGIEIPERTD 126
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 71
Score = 60.4 bits (147), Expect = 9e-13
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 26 SMLDYYKVLGVDKQSST-GDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSD 84
+ + ++L + + + T +K+ +RK+ L HPDK +I+EA + L
Sbjct: 12 NSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS-----PFLATKINEAKDFLEK 66
Query: 85 EKKRR 89
+
Sbjct: 67 RGISK 71
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 61.2 bits (148), Expect = 2e-12
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 31 YKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSE------ANKKFKEISEAYEVLSD 84
+K + + ++K+Y++ L HPDK + A K F+ + EA++ +
Sbjct: 43 WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102
Query: 85 E 85
Sbjct: 103 L 103
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 6e-06
Identities = 25/170 (14%), Positives = 43/170 (25%), Gaps = 43/170 (25%)
Query: 1 MLDYYKVLGVDKQSST--GDIKKASHSSMLDYYKVLGV-DKQSSTGDIKKAYRKLALKWH 57
D +K + DK ++ + + + L V L+L W
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-----SAHIPTILLSLIWF 397
Query: 58 PDKNPDNQSEANKKFKEISEAYEVL---SDEKKRRIYDDRGKGGYEDSRQR--------- 105
D NK K Y ++ E I Y + + +
Sbjct: 398 DVIKSDVMVVVNKLHK-----YSLVEKQPKESTISIPS-----IYLELKVKLENEYALHR 447
Query: 106 ---GRYRSQAKYD-----DDHDDD----FGGFH-RGFRFRDPEDVFREFF 142
Y +D + D G H + + +FR F
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Score = 34.1 bits (77), Expect = 0.033
Identities = 21/153 (13%), Positives = 44/153 (28%), Gaps = 44/153 (28%)
Query: 18 DIKKASHSSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNP-DN-----------Q 65
+ + A H S++D+Y I K + D
Sbjct: 440 ENEYALHRSIVDHYN------------IPKTFD----SDDLIPPYLDQYFYSHIGHHLKN 483
Query: 66 SEANKKFKEISEAYEVLS--DEKKRRI-YDDRGKGGYEDSRQRGR-YRSQAKYDDDHDDD 121
E ++ + ++K R G ++ Q+ + Y+ Y D+D
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK---PYICDNDPK 540
Query: 122 FGGFHRG---FRFRDPEDVFREFFGSASPFNDI 151
+ F + E++ S + D+
Sbjct: 541 YERLVNAILDFLPKIEENLIC------SKYTDL 567
Score = 31.4 bits (70), Expect = 0.28
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 111 QAKYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSASPFNDIFGIRPRNNR 160
Q +Y D F F +D +D+ + + I + +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-IDHIIMSKDAVSG 63
Score = 30.6 bits (68), Expect = 0.43
Identities = 34/238 (14%), Positives = 61/238 (25%), Gaps = 91/238 (38%)
Query: 32 KVLGVD-----KQSSTGD------IKKAYRKLALKWHPDKNPDN--QSEANKKFKEISEA 78
K L ++ T + I ++ R W DN +K I +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW------DNWKHVNCDKLTTIIESS 362
Query: 79 YEVLSDEKKRRIYDDRG------------------KGGYEDSRQ---------------- 104
VL + R+++D D
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 105 RGRYRSQAKYDD--DHDDDFGGFHRGFRFRDPEDVFREFFGSASPFNDIFGIRPRNNRGD 162
+ Y + ++ HR D ++ + F +D+ D
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHR--SIVDHYNIPKTF-----DSDDLI-----PPYLD 470
Query: 163 ETQLFHTGPLGFHNLGDIFSHSDAFSSFGG--FDFNSSGRGGAAVKTTSTSTRFIDGK 218
+ H +G H L +I H + + F DF RF++ K
Sbjct: 471 QYFYSH---IGHH-LKNI-EHPERMTLFRMVFLDF-----------------RFLEQK 506
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.029
Identities = 35/238 (14%), Positives = 62/238 (26%), Gaps = 82/238 (34%)
Query: 18 DIKKASHS--SMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDN----------- 64
DI H+ + L + K IK + P N
Sbjct: 100 DI----HALAAKLLQENDTTLVKTKEL--IKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 65 ---------QSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYEDSRQRGRYRSQAKYD 115
Q + F+E+ + Y+ Y + S + + D
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQ---------TYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 116 DDHDDDFGGFHRGFRF----RDPEDV-FREFFGSA--S-PFNDIFGIRPRNNRGDETQLF 167
+ F +G +P + +++ S S P G+ QL
Sbjct: 205 AEKV-----FTQGLNILEWLENPSNTPDKDYLLSIPISCPLI---GV---------IQLA 247
Query: 168 HTGPLGF----HNLGDIFSHSDAFSSFGGFDFNSSGRGG-----AAVKTTSTSTRFID 216
H + LG F+ + S G ++G A+ T + F
Sbjct: 248 H-----YVVTAKLLG--FTPGELRSYLKG----ATGHSQGLVTAVAIAETDSWESFFV 294
Score = 31.6 bits (71), Expect = 0.28
Identities = 44/297 (14%), Positives = 79/297 (26%), Gaps = 134/297 (45%)
Query: 23 SHSS-M-LDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKE---ISE 77
S M +D YK +S KA + + W+ A+ FK+ S
Sbjct: 1626 SQEQGMGMDLYK-------TS-----KAAQDV---WN---------RADNHFKDTYGFSI 1661
Query: 78 AYEVLSDEKKRRIYDDRGKGGYEDSRQRGRYRSQAKYDDDHD---------DDFGGFHRG 128
V+++ I+ GG + R R Y + ++ D +
Sbjct: 1662 LDIVINNPVNLTIHF----GGEKGKRIRENYSAM-IFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 129 FRFRDPEDVFRE--------FFGSASPFNDI--FGIRPRNNRGDETQLFHTGPLGFHNLG 178
+ FR + + + F D+ G+ P + F G H+LG
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA------TF----AG-HSLG 1765
Query: 179 ---------DIFSHSDAF---------------------SSFG-----------GFD--- 194
D+ S S++G F
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 195 --------------------FNSSGR----GG--AAVKTTSTSTRFIDGKKVTTKKM 225
+N + G A+ T + FI +K+ ++
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
>3eat_X Pyoverdine biosynthesis protein PVCB; paerucumarin,
Fe/alpha-ketoglutarate dependent hydroxylase,
2-isocyano-6,7-dihydroxycoumarin; 2.50A {Pseudomonas
aeruginosa}
Length = 293
Score = 28.9 bits (65), Expect = 1.3
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 78 AYEVLSDEKKRRIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPE 135
A ++ + R G Y+ S RS A + H RF +P
Sbjct: 149 ALQLADSSELELW--RRASGRYQRSAAHYSSRSAAPIVERHPR---REFPILRFCEPP 201
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske,
oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis}
SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Length = 825
Score = 28.9 bits (65), Expect = 1.5
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 112 AKYDDDHDDDFGGFHRGFRFRDPEDVFREFF 142
Y D + GF ++ ED F + F
Sbjct: 576 DMYQKDGKAEMAAQFEGFDWKTEEDAFNDGF 606
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 28.2 bits (63), Expect = 1.5
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 20/89 (22%)
Query: 13 QSSTGDIKKASHSSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKF 72
+ D K A Y K + + + +K+ +K
Sbjct: 89 RFDMADYKGA----KEAYEKGIEAEGNGGSDAMKRGLE----------------TTKRKI 128
Query: 73 KEISEAYEVLSDEKKRRIYDDRGKGGYED 101
+E + E +D+ RG GG D
Sbjct: 129 EEANRGAEPPADDVDDAAGASRGAGGMPD 157
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor,
dissimilatory nitrate reductase; HET: MGD MES; 1.90A
{Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1
PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A*
2jio_A*
Length = 723
Score = 28.7 bits (65), Expect = 1.7
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 124 GFH-RGFRFRDPEDVFREFFG-SASPFNDIFGI 154
G + FR+ EDV+ E+ S D +G+
Sbjct: 506 GVDPQLVNFRNAEDVWNEWRMVSKGTTYDFWGM 538
>1f0l_A Diphtheria toxin; bacterial toxin, ADP-ribosylation, transmembrane;
HET: APU; 1.55A {Corynebacterium diphtheriae} SCOP:
b.2.1.1 d.166.1.1 f.1.2.1 PDB: 1ddt_A* 1mdt_A* 1sgk_A
1tox_A* 1xdt_T 4ae0_A 4ae1_A 1dtp_A*
Length = 535
Score = 28.3 bits (62), Expect = 2.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 96 KGGYEDSRQRGRYRSQAKYDDDHDDDFGGFH 126
K GY DS Q+G + ++ ++DDD+ GF+
Sbjct: 24 KPGYVDSIQKGIQKPKSGTQGNYDDDWKGFY 54
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 26.6 bits (59), Expect = 4.6
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 33 VLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFK 73
V+ + S D K Y K+ P ++ F
Sbjct: 65 VMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD 105
>3hpy_A Catechol 2,3-dioxygenase; repeated motifs, aromatic hydrocarbons
catabolism, iron, oxidoreductase; 1.94A {Pseudomonas SP}
PDB: 3hpv_A 3hq0_A*
Length = 309
Score = 27.1 bits (60), Expect = 4.9
Identities = 5/63 (7%), Positives = 12/63 (19%), Gaps = 1/63 (1%)
Query: 113 KYDDDHDDDFGGFHRGFRFRDPEDVFREFFGSASPFNDIFGIRPRNNRGDETQLFHTGPL 172
+ RF P E + + + + + P+
Sbjct: 92 TTTRIPAGEMLETGERVRFELPSGHLIELYAEKTCVGNGIS-EVNPAPWNAQREHGIAPI 150
Query: 173 GFH 175
Sbjct: 151 QLD 153
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 65
Score = 24.8 bits (54), Expect = 7.3
Identities = 5/33 (15%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 31 YKVLGVDKQSSTGD---IKKAYRKLALKWHPDK 60
K+L +++ + I + L +K
Sbjct: 7 CKILNIEESKGDLNMDKINNRFNYLFEVNDKEK 39
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 7.4
Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 25/78 (32%)
Query: 55 KWHPDKNP-----DNQSEANKK------FKEISEAYEVLSDEKKRRIYDDRGKGGYEDSR 103
KW ++ D S+ ++ K++ E + S++ ++ ++R
Sbjct: 89 KWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR--------- 139
Query: 104 QRGRYRSQAKYDDDHDDD 121
+ + D D
Sbjct: 140 -----IADKAFYQQPDAD 152
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X
3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 1s1i_T 3jyw_T
Length = 142
Score = 26.0 bits (57), Expect = 7.6
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 7 VLGVDKQSSTGDIKKASHSSMLDYYKVLGVDKQSSTGDIKKAYRKLA 53
V V +++ IKKA VL V+ KKAY +L
Sbjct: 83 VFQVSMKANKYQIKKAVKELYE--VDVLKVNTLVRPNGTKKAYVRLT 127
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB:
1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S*
1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S*
1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Length = 85
Score = 25.3 bits (56), Expect = 7.7
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 10 VDKQSSTGDIKKASHSSMLDYYKVLGVDKQSSTGDIKKAYRKLA 53
VD ++S G++ A D V V+ Q++ KKA +L+
Sbjct: 29 VDDRASKGEVADAVEE-QYDV-TVEQVNTQNTMDGEKKAVVRLS 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.401
Gapped
Lambda K H
0.267 0.0555 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,716,199
Number of extensions: 229239
Number of successful extensions: 707
Number of sequences better than 10.0: 1
Number of HSP's gapped: 659
Number of HSP's successfully gapped: 71
Length of query: 230
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 140
Effective length of database: 4,188,903
Effective search space: 586446420
Effective search space used: 586446420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.7 bits)