RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13284
(230 letters)
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 82.3 bits (203), Expect = 4e-21
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDN--QSEANKKFKEISEAYEVLSDEK 86
+K +G+ + +KK YRK L HPDK + A F E+++A+ ++
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93
Query: 87 KRRIY 91
++ +Y
Sbjct: 94 QKPLY 98
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 77.4 bits (190), Expect = 1e-19
Identities = 36/72 (50%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY++LGV K + +I+KAY++LA+K+HPD+N ++ KFKEI EAYEVL+D +KR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEA-EAKFKEIKEAYEVLTDSQKR 62
Query: 89 RIYDDRGKGGYE 100
YD G +E
Sbjct: 63 AAYDQYGHAAFE 74
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 78.2 bits (192), Expect = 2e-19
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANK-----KFKEISEAYEVLS 83
D+Y +LG D ++ D+K+ Y+KL L +HPDK + KF EI +A+++L
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 84 DEKKRRIYDDRGKGG 98
+E+ ++ YD + G
Sbjct: 77 NEETKKKYDLQRSGP 91
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 77.0 bits (189), Expect = 3e-19
Identities = 23/72 (31%), Positives = 33/72 (45%)
Query: 25 SSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSD 84
S + + V+ + + KK R+L LKWHPDKNP+N AN+ FK + L
Sbjct: 13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK 72
Query: 85 EKKRRIYDDRGK 96
+ DR
Sbjct: 73 QAFLDQNADRAS 84
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 74.3 bits (182), Expect = 2e-18
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 28 LDYYKVLGVDKQSS--TGDIKKAYRKLALKWHPDKNPDNQSEANK----KFKEISEAYEV 81
+DY+ + G+ + T + ++ L ++HPDK + I++A++
Sbjct: 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60
Query: 82 LSDEKKRRIYD 92
L R Y
Sbjct: 61 LRHPLMRAEYL 71
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 70.5 bits (172), Expect = 7e-17
Identities = 38/74 (51%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 29 DYYKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKR 88
DYY+ LG+ + +S +IK+AYR+ AL++HPDKN + A +KFKEI+EAY+VLSD +KR
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG--AEEKFKEIAEAYDVLSDPRKR 61
Query: 89 RIYDDRGKGGYEDS 102
I+D G+ G + S
Sbjct: 62 EIFDRYGEEGLKGS 75
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 70.4 bits (172), Expect = 1e-16
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 20 KKASHSSMLDYYKVLGVDKQ--SSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISE 77
+ S + ++L + +Q G +++AY++ +L HPDK + +E++
Sbjct: 3 RVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHA-----LMQELNS 57
Query: 78 AYEVLSDEKKRRIYDDRGKG 97
+ E + G G
Sbjct: 58 LWGTFKTEVYNLRMNLGGTG 77
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 61.3 bits (148), Expect = 5e-13
Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 23/124 (18%)
Query: 29 DYYKVLGVDK--QSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEK 86
+LG+++ + ++KAY K ++HPDK D + K K+++ Y+ + D
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE-----KMKKMNTLYKKMEDGV 63
Query: 87 KRRIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVF--REFFGS 144
K D G + + + + E++F E S
Sbjct: 64 KYAHQPDFGGFWDATEIPTY--------------GTDEWEQWWNAFNEENLFCSEEMPSS 109
Query: 145 ASPF 148
Sbjct: 110 DDEA 113
>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha
chain {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 670
Score = 29.6 bits (65), Expect = 0.38
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 72 FKEISEAY---EVLSDEKKRRIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRG 128
E S+ + EV +E RGK +E G + D + D
Sbjct: 525 LMEFSKRFTTDEVWPEEILSAAPAYRGKTLFEVLFANGSVD-RFPASDVNPDHANHEAAL 583
Query: 129 FRFRDPEDVFREF 141
F F + +F E+
Sbjct: 584 FGFYPQKGLFEEY 596
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 335
Score = 27.8 bits (61), Expect = 1.1
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 44 DIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRI 90
++ Y+K LK + ++ NK F E + + L E RR+
Sbjct: 290 EVYDHYQKTILK----PGVEANNKWNKLFSEYQKKFPELGAELARRL 332
>d1f0la2 d.166.1.1 (A:1-187) Diphtheria toxin, N-terminal domain
{Corynebacterium diphtheriae [TaxId: 1717]}
Length = 187
Score = 26.6 bits (58), Expect = 1.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 96 KGGYEDSRQRGRYRSQAKYDDDHDDDFGGFH 126
K GY DS Q+G + ++ ++DDD+ GF+
Sbjct: 24 KPGYVDSIQKGIQKPKSGTQGNYDDDWKGFY 54
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
(Zea mays) [TaxId: 4577]}
Length = 338
Score = 26.7 bits (58), Expect = 2.2
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 44 DIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRI 90
D+K + + + +++ N KF E + Y + K I
Sbjct: 294 DVKSHWSRHT-----PEGAALEADWNAKFAEYEKKYADDAATLKSII 335
>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit
QorS, N-domain {Pseudomonas putida [TaxId: 303]}
Length = 81
Score = 25.2 bits (55), Expect = 2.3
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 190 FGGFDFNSSGRGGAAVKTTSTSTRFIDGKKVTT 222
G + GA +++ T +G + T
Sbjct: 44 QGVCGSCTILIDGAPMRSCLTLAVQAEGCSIET 76
>d1ekqa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase,
ThiK) {Bacillus subtilis [TaxId: 1423]}
Length = 269
Score = 26.5 bits (58), Expect = 2.4
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 16 TGDIKKASHSSMLDYYKVLGVDKQSSTGDIKKAYRKLALKWHP 58
G+ + +H+ + + + GVD GDI + ++ A K +
Sbjct: 121 RGNAAEIAHTVGVTDWLIKGVDAGEGGGDIIRLAQQAAQKLNT 163
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 336
Score = 26.8 bits (58), Expect = 2.5
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 44 DIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRI 90
D++ +R H DK Q + + + A+ ++
Sbjct: 290 DVRAVFRM-----HIDKCSAEQKAWEELLAKYTAAFPAEGAAFVAQM 331
>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit
{Alcaligenes faecalis [TaxId: 511]}
Length = 679
Score = 26.7 bits (57), Expect = 2.7
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 114 YDDDHDDDFGGFHRGFRFRDPEDVFREFF 142
Y D + GF ++ ED F + F
Sbjct: 575 YQKDGKAEMAAQFEGFDWKTEEDAFNDGF 603
>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 387
Score = 26.5 bits (58), Expect = 2.8
Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 23/88 (26%)
Query: 127 RGFRFRDPEDVFREFFGSASPFNDIFGIRPRNNRGDET------------QLFHTGPLGF 174
RGF V +E+ F G +N+ + Q+ P F
Sbjct: 245 RGFE----VLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAF 300
Query: 175 ----HNLGDIFSHSDAFSS-FGGFDFNS 197
+ L I H +S FG F NS
Sbjct: 301 EFNEYFLITILDH--LYSCLFGTFLCNS 326
>d1szqa_ e.44.1.1 (A:) 2-methylcitrate dehydratase PrpD {Escherichia
coli [TaxId: 562]}
Length = 473
Score = 26.8 bits (58), Expect = 2.8
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 55 KWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYD 92
H + D + KFK +++RI +
Sbjct: 416 IGHARRRQDGIPKLVDKFKINLAR--QFPTRQQQRILE 451
>d1repc1 a.4.5.10 (C:15-143) RepE54 {Escherichia coli, mini-F
plasmid [TaxId: 562]}
Length = 129
Score = 25.6 bits (56), Expect = 3.5
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 65 QSEANKKFKEISEAYEVLSDEKKRRIYDDRGKGGYEDSRQRGRYRSQAKYDDD 117
+ + K+I +A + + K+ Y G E + + + +
Sbjct: 58 GLTSAEASKDIRQALKSFA-GKEVVFYRPEEDAGDEKGYESFPWFIKPAHSPS 109
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4
{Human (Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 24.3 bits (53), Expect = 3.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 74 EISEAYEVLSDEKKRRIYD 92
++ A + L+ +KRRIYD
Sbjct: 27 DLKLAADTLAVRQKRRIYD 45
>d1y0za_ b.82.2.8 (A:) Clavaminate synthase-like protein At3g21360
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 327
Score = 26.0 bits (56), Expect = 4.2
Identities = 13/120 (10%), Positives = 31/120 (25%), Gaps = 6/120 (5%)
Query: 77 EAYEVLSDEKKRRIYDDRGKG-----GYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRF 131
YE + D+ + G + + D +
Sbjct: 151 VVYERMKDKHPEFVQRLEEHGLLYVRVLGEDDDPSSPIGRGWKSTFLTHDKNLAEQRAVD 210
Query: 132 RDPEDVFREFFGSASPFNDIFGIRPRNNRGDETQLFHTGPLGFHNLGDIFSHSDAFSSFG 191
+ + E G+ + I I+ + + F++ + D + +FG
Sbjct: 211 LGMKLEWTEDGGAKTVMGPIPAIK-YDESRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFG 269
>d1w5sa1 a.4.5.11 (A:300-409) CDC6-like protein APE0152, C-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 110
Score = 24.8 bits (54), Expect = 4.6
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 19/71 (26%)
Query: 41 STGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRIYDDR--GKGG 98
+ G +++ Y +L + N K + ++ + L + D + G+G
Sbjct: 30 NAGLLRQRYEDASLTMY-----------NVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGM 78
Query: 99 YEDSRQRGRYR 109
RGR
Sbjct: 79 ------RGRTT 83
>d2joqa1 d.58.54.2 (A:4-89) Hypothetical protein HP0495
{Helicobacter pylori [TaxId: 210]}
Length = 86
Score = 24.4 bits (53), Expect = 5.8
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 31 YKVLGVDKQSSTGDIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEVLSDEKKRRI 90
Y+V+ K +ST + P K + N KF + + EV ++ ++ I
Sbjct: 18 YRVIMTTKDTSTLKELLETYQ-----RPFKLEFKNTSKNAKFYSFNVSMEVSNESERNEI 72
Query: 91 YDD 93
+
Sbjct: 73 FQK 75
>d1j5sa_ c.1.9.8 (A:) Uronate isomerase TM0064 {Thermotoga maritima
[TaxId: 2336]}
Length = 451
Score = 25.7 bits (56), Expect = 5.9
Identities = 18/118 (15%), Positives = 39/118 (33%), Gaps = 7/118 (5%)
Query: 29 DYYKV-----LGVDKQSSTG--DIKKAYRKLALKWHPDKNPDNQSEANKKFKEISEAYEV 81
D+Y GV ++ TG K+ + LA + + +V
Sbjct: 56 DHYVWELMRRCGVSEEYITGSRSNKEKWLALAKVFPRFVGNPTYEWIHLDLWRRFNIKKV 115
Query: 82 LSDEKKRRIYDDRGKGGYEDSRQRGRYRSQAKYDDDHDDDFGGFHRGFRFRDPEDVFR 139
+S+E I+++ K E + Q+ + + DD + ++ +
Sbjct: 116 ISEETAEEIWEETKKKLPEMTPQKLLRDMKVEILCTTDDPVSTLEHHRKAKEAVEGVT 173
>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 81
Score = 23.5 bits (51), Expect = 8.9
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 10 VDKQSSTGDIKKASHSSMLDYYKVLGVDKQSSTGDIKKAYRKLA 53
VD ++S G++ A D V V+ Q++ KKA +L+
Sbjct: 28 VDDRASKGEVADAV-EEQYDV-TVEQVNTQNTMDGEKKAVVRLS 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.401
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 918,743
Number of extensions: 45597
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 33
Length of query: 230
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,281,736
Effective search space: 189696928
Effective search space used: 189696928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)