Query psy13286
Match_columns 351
No_of_seqs 155 out of 1871
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 15:35:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0326|consensus 100.0 8.6E-62 1.9E-66 396.4 22.7 324 5-329 135-458 (459)
2 KOG0330|consensus 100.0 1.2E-58 2.7E-63 387.2 22.4 313 5-318 111-425 (476)
3 KOG0331|consensus 100.0 1.7E-57 3.7E-62 403.7 30.1 329 2-330 133-478 (519)
4 KOG0328|consensus 100.0 2.3E-57 5E-62 364.6 27.1 322 3-325 72-398 (400)
5 COG0513 SrmB Superfamily II DN 100.0 4.7E-55 1E-59 403.7 33.8 316 1-317 70-398 (513)
6 PRK11776 ATP-dependent RNA hel 100.0 5.1E-54 1.1E-58 396.7 34.9 318 1-319 45-368 (460)
7 PRK04837 ATP-dependent RNA hel 100.0 1.6E-53 3.4E-58 389.4 35.4 325 1-325 49-387 (423)
8 PTZ00110 helicase; Provisional 100.0 2.5E-53 5.4E-58 395.9 34.2 331 1-331 171-515 (545)
9 PRK10590 ATP-dependent RNA hel 100.0 1.2E-52 2.6E-57 385.9 34.7 317 1-317 42-369 (456)
10 PRK11634 ATP-dependent RNA hel 100.0 2.9E-52 6.2E-57 392.1 34.7 320 1-321 47-373 (629)
11 PLN00206 DEAD-box ATP-dependen 100.0 3.9E-52 8.4E-57 387.0 33.9 327 1-328 162-503 (518)
12 PRK11192 ATP-dependent RNA hel 100.0 3.3E-51 7.2E-56 375.8 37.4 318 1-318 42-370 (434)
13 PRK04537 ATP-dependent RNA hel 100.0 1.1E-51 2.4E-56 386.1 33.7 319 1-319 50-383 (572)
14 PRK01297 ATP-dependent RNA hel 100.0 3.2E-51 7E-56 379.0 35.4 317 1-317 128-459 (475)
15 KOG0333|consensus 100.0 8.1E-52 1.8E-56 358.2 27.4 321 3-323 288-648 (673)
16 PTZ00424 helicase 45; Provisio 100.0 3E-50 6.5E-55 367.0 35.0 323 1-324 69-398 (401)
17 KOG0345|consensus 100.0 2.1E-50 4.5E-55 345.4 27.8 308 2-309 48-373 (567)
18 KOG0335|consensus 100.0 8.5E-51 1.8E-55 355.1 25.5 325 1-325 115-469 (482)
19 KOG0342|consensus 100.0 5.4E-50 1.2E-54 344.9 28.7 309 1-309 123-446 (543)
20 KOG0338|consensus 100.0 2.9E-50 6.3E-55 347.5 24.0 309 3-311 224-544 (691)
21 KOG0343|consensus 100.0 1E-48 2.2E-53 340.9 27.7 314 3-318 112-440 (758)
22 KOG0340|consensus 100.0 7.1E-49 1.5E-53 325.0 25.0 321 3-324 50-385 (442)
23 KOG0336|consensus 100.0 1.5E-48 3.2E-53 328.8 23.8 334 3-337 263-609 (629)
24 KOG0339|consensus 100.0 2E-46 4.3E-51 323.6 28.2 325 3-327 266-602 (731)
25 KOG0346|consensus 100.0 3.6E-47 7.8E-52 323.0 22.5 316 1-316 60-426 (569)
26 KOG0332|consensus 100.0 4.9E-47 1.1E-51 316.0 22.2 315 3-321 137-465 (477)
27 KOG0327|consensus 100.0 2.8E-46 6E-51 313.6 22.6 320 3-325 71-395 (397)
28 KOG0341|consensus 100.0 3E-47 6.6E-52 318.9 15.9 322 4-326 214-555 (610)
29 KOG4284|consensus 100.0 1.9E-45 4.2E-50 325.7 24.4 300 1-302 66-381 (980)
30 TIGR03817 DECH_helic helicase/ 100.0 2.5E-44 5.5E-49 344.7 30.4 310 1-319 55-407 (742)
31 KOG0350|consensus 100.0 4.6E-45 1E-49 314.7 21.8 313 2-314 188-554 (620)
32 KOG0348|consensus 100.0 7.1E-45 1.5E-49 315.9 22.1 311 1-311 178-565 (708)
33 KOG0347|consensus 100.0 2.6E-45 5.7E-50 319.5 18.3 313 4-317 226-587 (731)
34 TIGR00614 recQ_fam ATP-depende 100.0 5.4E-43 1.2E-47 322.9 30.5 295 1-310 30-343 (470)
35 PLN03137 ATP-dependent DNA hel 100.0 3.7E-43 7.9E-48 335.9 29.9 297 1-310 479-797 (1195)
36 KOG0334|consensus 100.0 6.5E-43 1.4E-47 326.4 23.8 325 1-325 406-745 (997)
37 PRK11057 ATP-dependent DNA hel 100.0 1.1E-41 2.3E-46 322.1 30.4 292 1-308 44-351 (607)
38 KOG0337|consensus 100.0 3.9E-43 8.5E-48 296.9 17.6 313 8-320 74-388 (529)
39 TIGR01389 recQ ATP-dependent D 100.0 6.1E-41 1.3E-45 318.0 30.4 295 1-309 32-340 (591)
40 PRK09751 putative ATP-dependen 100.0 1.4E-39 2.9E-44 323.3 32.6 314 2-318 1-405 (1490)
41 PRK13767 ATP-dependent helicas 100.0 2.8E-39 6E-44 315.9 29.7 286 1-288 51-385 (876)
42 COG0514 RecQ Superfamily II DN 100.0 1.7E-39 3.7E-44 294.3 23.7 298 1-311 36-348 (590)
43 TIGR00580 mfd transcription-re 100.0 7.6E-39 1.6E-43 309.9 29.7 294 1-311 476-787 (926)
44 KOG0344|consensus 100.0 3.1E-40 6.6E-45 291.1 17.4 327 1-327 177-522 (593)
45 PRK02362 ski2-like helicase; P 100.0 7.6E-39 1.6E-43 310.1 27.2 288 1-301 43-398 (737)
46 PRK10917 ATP-dependent DNA hel 100.0 2.9E-38 6.2E-43 301.9 28.9 281 1-298 286-587 (681)
47 PRK10689 transcription-repair 100.0 1.6E-37 3.5E-42 306.8 29.8 281 1-299 625-918 (1147)
48 PRK00254 ski2-like helicase; P 100.0 1.1E-37 2.3E-42 301.3 26.1 290 1-301 43-389 (720)
49 TIGR00643 recG ATP-dependent D 100.0 3E-37 6.4E-42 293.2 28.4 281 1-297 260-563 (630)
50 COG1111 MPH1 ERCC4-like helica 100.0 4.2E-37 9.2E-42 267.4 26.7 298 1-300 33-481 (542)
51 TIGR02621 cas3_GSU0051 CRISPR- 100.0 7.4E-37 1.6E-41 288.5 30.0 284 1-297 35-388 (844)
52 COG1201 Lhr Lhr-like helicases 100.0 6.2E-37 1.3E-41 287.5 24.6 295 1-299 41-361 (814)
53 KOG0329|consensus 100.0 5.4E-38 1.2E-42 249.6 14.3 291 2-328 84-384 (387)
54 PHA02653 RNA helicase NPH-II; 100.0 2.4E-35 5.2E-40 276.6 27.8 294 1-309 183-523 (675)
55 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.5E-35 5.4E-40 282.8 28.1 284 1-302 21-338 (819)
56 PRK01172 ski2-like helicase; P 100.0 6.8E-36 1.5E-40 287.6 24.2 285 1-300 41-378 (674)
57 PRK11664 ATP-dependent RNA hel 100.0 3.8E-35 8.3E-40 282.1 26.8 284 1-302 24-341 (812)
58 TIGR01587 cas3_core CRISPR-ass 100.0 2.4E-35 5.2E-40 264.7 23.4 291 1-300 3-336 (358)
59 PHA02558 uvsW UvsW helicase; P 100.0 4.5E-35 9.7E-40 271.7 22.8 278 1-294 133-446 (501)
60 COG1204 Superfamily II helicas 100.0 2E-35 4.4E-40 280.6 20.8 292 1-297 51-405 (766)
61 COG1202 Superfamily II helicas 100.0 5.9E-35 1.3E-39 256.5 17.6 295 1-301 236-554 (830)
62 PRK12898 secA preprotein trans 100.0 8.5E-34 1.8E-38 262.3 26.2 293 1-302 120-588 (656)
63 PRK09200 preprotein translocas 100.0 2.9E-33 6.2E-38 264.1 25.1 297 1-302 95-543 (790)
64 PRK09401 reverse gyrase; Revie 100.0 1.9E-33 4.2E-38 278.6 24.3 270 1-286 99-430 (1176)
65 TIGR03714 secA2 accessory Sec 100.0 1.1E-32 2.4E-37 257.8 25.9 294 1-302 87-539 (762)
66 PRK13766 Hef nuclease; Provisi 100.0 7.2E-32 1.6E-36 264.5 31.5 294 1-299 33-478 (773)
67 PRK14701 reverse gyrase; Provi 100.0 9.5E-33 2.1E-37 279.2 25.0 296 1-308 98-464 (1638)
68 TIGR00963 secA preprotein tran 100.0 2.3E-32 5E-37 254.1 25.6 297 1-303 73-520 (745)
69 KOG0351|consensus 100.0 2.7E-32 5.9E-37 261.3 24.1 305 1-312 283-604 (941)
70 TIGR00603 rad25 DNA repair hel 100.0 9.9E-32 2.1E-36 251.4 24.7 279 1-301 277-608 (732)
71 TIGR03158 cas3_cyano CRISPR-as 100.0 5.2E-31 1.1E-35 234.3 27.3 271 1-285 18-357 (357)
72 COG1205 Distinct helicase fami 100.0 3.2E-31 7E-36 255.5 26.0 309 1-313 89-437 (851)
73 TIGR01054 rgy reverse gyrase. 100.0 2.4E-31 5.3E-36 264.1 25.8 256 1-272 97-409 (1171)
74 KOG0352|consensus 100.0 5E-32 1.1E-36 230.3 15.0 294 2-310 41-372 (641)
75 KOG0354|consensus 100.0 4.7E-31 1E-35 242.5 22.2 294 1-300 80-529 (746)
76 COG1200 RecG RecG-like helicas 100.0 2.1E-30 4.6E-35 234.9 25.8 287 1-301 287-592 (677)
77 KOG0952|consensus 100.0 4.2E-31 9E-36 246.2 20.8 302 1-308 130-499 (1230)
78 KOG0349|consensus 100.0 1.1E-29 2.5E-34 216.5 21.7 305 24-328 286-675 (725)
79 PRK11131 ATP-dependent RNA hel 100.0 3E-29 6.5E-34 246.0 26.7 282 1-303 93-414 (1294)
80 KOG0353|consensus 100.0 1.1E-29 2.3E-34 213.5 17.0 305 2-317 114-484 (695)
81 KOG0951|consensus 100.0 2.1E-29 4.6E-34 238.0 19.6 298 1-304 329-706 (1674)
82 PRK04914 ATP-dependent helicas 100.0 3.8E-28 8.3E-33 234.9 26.7 136 179-314 479-617 (956)
83 TIGR00595 priA primosomal prot 100.0 3.9E-27 8.5E-32 217.1 27.1 284 1-297 1-378 (505)
84 COG1061 SSL2 DNA or RNA helica 100.0 4.8E-28 1E-32 220.5 20.7 271 1-287 59-376 (442)
85 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.1E-27 2.4E-32 235.8 24.1 287 1-303 86-407 (1283)
86 PRK12906 secA preprotein trans 100.0 2.9E-27 6.2E-32 222.2 21.6 296 1-302 97-555 (796)
87 PRK13104 secA preprotein trans 100.0 8.1E-27 1.8E-31 220.3 24.7 293 1-302 99-589 (896)
88 COG1197 Mfd Transcription-repa 100.0 6.3E-27 1.4E-31 223.7 23.0 268 19-300 638-913 (1139)
89 PRK05580 primosome assembly pr 100.0 1.9E-26 4E-31 220.1 26.0 287 1-300 166-549 (679)
90 PRK12904 preprotein translocas 100.0 2.4E-26 5.1E-31 216.9 25.7 296 1-302 98-575 (830)
91 PRK09694 helicase Cas3; Provis 100.0 3.9E-26 8.4E-31 219.7 24.9 284 1-289 305-664 (878)
92 COG4098 comFA Superfamily II D 99.9 3E-25 6.4E-30 184.4 23.3 280 1-300 120-416 (441)
93 PRK11448 hsdR type I restricti 99.9 7.6E-25 1.6E-29 216.6 23.7 292 1-299 437-814 (1123)
94 PRK13107 preprotein translocas 99.9 2.1E-24 4.5E-29 203.5 24.1 296 1-302 99-593 (908)
95 KOG0947|consensus 99.9 4.8E-24 1E-28 197.5 18.6 284 2-299 317-722 (1248)
96 PLN03142 Probable chromatin-re 99.9 3.8E-23 8.2E-28 201.2 24.4 303 4-314 197-615 (1033)
97 KOG0948|consensus 99.9 5.5E-24 1.2E-28 192.7 12.9 280 7-300 156-539 (1041)
98 COG4581 Superfamily II RNA hel 99.9 3.5E-23 7.7E-28 198.1 18.4 288 1-296 138-533 (1041)
99 PRK12899 secA preprotein trans 99.9 7.5E-22 1.6E-26 186.7 23.2 123 178-302 551-683 (970)
100 KOG0950|consensus 99.9 7.2E-23 1.6E-27 190.6 16.1 300 4-309 247-620 (1008)
101 cd00268 DEADc DEAD-box helicas 99.9 9.3E-22 2E-26 162.6 15.5 157 1-157 40-202 (203)
102 COG1203 CRISPR-associated heli 99.9 9.2E-22 2E-26 189.8 17.8 295 2-300 219-550 (733)
103 PRK12900 secA preprotein trans 99.9 4.4E-21 9.5E-26 182.1 20.2 126 176-303 579-714 (1025)
104 COG1643 HrpA HrpA-like helicas 99.9 7.9E-21 1.7E-25 180.8 21.9 288 1-301 69-388 (845)
105 COG1110 Reverse gyrase [DNA re 99.9 6.6E-20 1.4E-24 172.1 21.5 255 2-271 102-416 (1187)
106 PRK12326 preprotein translocas 99.9 1.7E-19 3.7E-24 166.8 22.4 295 2-302 96-549 (764)
107 TIGR00631 uvrb excinuclease AB 99.8 1.2E-19 2.7E-24 171.5 21.0 150 179-329 426-591 (655)
108 KOG0385|consensus 99.8 1.8E-19 3.9E-24 164.2 20.5 304 4-317 195-618 (971)
109 COG4096 HsdR Type I site-speci 99.8 4.7E-20 1E-24 170.4 16.5 284 1-302 189-547 (875)
110 PRK05298 excinuclease ABC subu 99.8 1.2E-19 2.6E-24 172.8 18.9 149 180-329 431-595 (652)
111 KOG0922|consensus 99.8 8.3E-19 1.8E-23 158.5 21.7 285 2-301 71-391 (674)
112 PF00270 DEAD: DEAD/DEAH box h 99.8 5.8E-20 1.3E-24 147.3 12.2 142 1-144 18-167 (169)
113 cd00079 HELICc Helicase superf 99.8 2.8E-19 6E-24 137.0 14.8 118 179-296 12-131 (131)
114 TIGR00348 hsdR type I site-spe 99.8 2.4E-18 5.3E-23 164.5 23.9 274 1-287 267-634 (667)
115 PRK13103 secA preprotein trans 99.8 1.1E-18 2.4E-23 165.3 20.5 296 1-302 99-593 (913)
116 KOG0949|consensus 99.8 1.5E-18 3.3E-23 161.8 19.3 137 1-142 530-674 (1330)
117 KOG0387|consensus 99.8 3.5E-18 7.6E-23 156.5 17.9 278 10-296 241-652 (923)
118 PF00271 Helicase_C: Helicase 99.8 3.3E-19 7.1E-24 123.2 7.9 78 211-288 1-78 (78)
119 COG0556 UvrB Helicase subunit 99.8 1.3E-17 2.9E-22 146.8 17.8 194 129-329 386-595 (663)
120 KOG0953|consensus 99.8 6.5E-18 1.4E-22 149.2 15.4 273 4-317 198-490 (700)
121 COG1198 PriA Primosomal protei 99.8 2.8E-17 6.2E-22 154.5 20.5 287 1-301 221-604 (730)
122 PRK12903 secA preprotein trans 99.8 4.2E-17 9.2E-22 153.2 21.5 295 2-302 96-541 (925)
123 KOG0384|consensus 99.8 1.5E-17 3.3E-22 158.6 14.4 298 10-316 406-829 (1373)
124 KOG1123|consensus 99.7 4.6E-17 9.9E-22 142.3 14.8 272 22-308 343-661 (776)
125 CHL00122 secA preprotein trans 99.7 5.1E-16 1.1E-20 146.7 22.1 254 1-260 93-491 (870)
126 KOG0389|consensus 99.7 1.2E-16 2.6E-21 146.5 16.3 120 181-300 763-888 (941)
127 TIGR01407 dinG_rel DnaQ family 99.7 5.7E-15 1.2E-19 145.8 26.0 120 192-312 673-828 (850)
128 KOG0923|consensus 99.7 1.1E-15 2.4E-20 137.7 18.8 285 1-299 284-605 (902)
129 KOG0390|consensus 99.7 1.7E-14 3.6E-19 135.4 25.7 263 25-296 299-701 (776)
130 KOG0392|consensus 99.7 1.7E-15 3.7E-20 144.6 18.4 264 25-296 1032-1448(1549)
131 KOG4150|consensus 99.7 4.3E-16 9.3E-21 138.3 12.9 319 7-327 313-669 (1034)
132 KOG0920|consensus 99.7 9.1E-15 2E-19 139.5 20.1 287 2-300 193-544 (924)
133 smart00490 HELICc helicase sup 99.7 4.7E-16 1E-20 108.5 8.6 81 208-288 2-82 (82)
134 PRK12902 secA preprotein trans 99.7 1.9E-14 4.2E-19 136.1 21.7 253 2-260 103-506 (939)
135 PF06862 DUF1253: Protein of u 99.6 3E-13 6.6E-18 120.5 27.3 286 22-308 35-423 (442)
136 KOG0924|consensus 99.6 1.9E-15 4.2E-20 136.6 12.8 284 1-299 375-696 (1042)
137 PRK07246 bifunctional ATP-depe 99.6 2.8E-13 6.1E-18 132.3 25.2 118 192-312 646-797 (820)
138 KOG0951|consensus 99.6 1.6E-13 3.5E-18 131.7 20.8 287 1-308 1163-1502(1674)
139 smart00487 DEXDc DEAD-like hel 99.6 7.6E-14 1.7E-18 114.6 15.9 158 1-160 28-191 (201)
140 cd00046 DEXDc DEAD-like helica 99.6 8.5E-14 1.8E-18 107.7 13.1 137 1-139 4-144 (144)
141 KOG0926|consensus 99.6 2.2E-13 4.8E-18 125.5 17.4 285 1-299 275-703 (1172)
142 PRK12901 secA preprotein trans 99.5 2.8E-13 6.1E-18 129.7 17.7 124 177-302 610-743 (1112)
143 TIGR03117 cas_csf4 CRISPR-asso 99.5 9.2E-12 2E-16 116.7 27.1 114 184-300 462-616 (636)
144 KOG1000|consensus 99.5 6E-12 1.3E-16 110.5 19.8 280 25-313 242-618 (689)
145 COG4889 Predicted helicase [Ge 99.5 3.2E-13 6.9E-18 125.7 10.2 94 195-288 462-573 (1518)
146 KOG0925|consensus 99.4 4.6E-12 1E-16 111.0 16.0 193 96-300 157-387 (699)
147 PRK08074 bifunctional ATP-depe 99.4 6.2E-11 1.3E-15 118.0 24.9 121 192-312 751-907 (928)
148 KOG0386|consensus 99.4 9.8E-13 2.1E-17 124.1 10.1 120 178-297 709-833 (1157)
149 PF02399 Herpes_ori_bp: Origin 99.4 3.2E-11 7E-16 113.5 16.3 283 1-300 53-388 (824)
150 PRK14873 primosome assembly pr 99.3 5.1E-11 1.1E-15 113.2 16.7 132 6-147 169-311 (665)
151 KOG0388|consensus 99.3 9.8E-11 2.1E-15 107.1 13.7 118 178-295 1027-1147(1185)
152 PF04851 ResIII: Type III rest 99.2 1.7E-11 3.6E-16 99.5 7.3 129 1-140 29-183 (184)
153 KOG4439|consensus 99.2 2.4E-10 5.2E-15 104.5 14.6 103 193-295 746-851 (901)
154 COG0653 SecA Preprotein transl 99.2 2.1E-10 4.5E-15 108.7 14.3 293 3-301 99-546 (822)
155 KOG1002|consensus 99.2 2E-09 4.4E-14 95.0 17.7 122 179-300 620-749 (791)
156 TIGR02562 cas3_yersinia CRISPR 99.2 1.6E-09 3.5E-14 105.0 17.6 91 196-289 759-881 (1110)
157 COG0553 HepA Superfamily II DN 99.1 4.1E-09 9E-14 106.1 17.3 117 179-295 692-815 (866)
158 KOG1015|consensus 99.1 4.2E-09 9.1E-14 99.5 15.1 116 181-296 1128-1271(1567)
159 PF07652 Flavi_DEAD: Flaviviru 99.0 2.8E-10 6.2E-15 85.1 3.8 126 3-145 10-142 (148)
160 KOG2340|consensus 99.0 8.4E-09 1.8E-13 91.8 13.2 284 24-308 293-676 (698)
161 COG0610 Type I site-specific r 98.9 5E-07 1.1E-11 90.2 22.3 284 5-298 281-651 (962)
162 KOG0391|consensus 98.8 5.9E-08 1.3E-12 93.7 11.9 123 178-300 1259-1387(1958)
163 PF00176 SNF2_N: SNF2 family N 98.7 3.4E-08 7.4E-13 86.6 7.1 113 25-141 59-174 (299)
164 TIGR00596 rad1 DNA repair prot 98.6 4.5E-06 9.7E-11 81.3 19.6 70 71-140 4-73 (814)
165 PF13307 Helicase_C_2: Helicas 98.5 3.9E-07 8.5E-12 72.3 7.6 112 186-300 3-150 (167)
166 COG1199 DinG Rad3-related DNA 98.5 4.7E-06 1E-10 81.2 15.0 114 183-300 470-617 (654)
167 PRK11747 dinG ATP-dependent DN 98.3 2.5E-05 5.5E-10 76.0 16.7 111 184-300 527-674 (697)
168 KOG1016|consensus 98.3 0.00027 5.8E-09 66.7 20.9 104 193-296 719-843 (1387)
169 TIGR00604 rad3 DNA repair heli 98.3 7.7E-05 1.7E-09 73.1 18.0 108 193-300 522-674 (705)
170 PF07517 SecA_DEAD: SecA DEAD- 98.1 1.2E-05 2.6E-10 68.0 8.4 108 1-111 94-210 (266)
171 KOG0952|consensus 98.0 2.3E-06 5E-11 82.5 1.9 233 2-242 948-1204(1230)
172 KOG1001|consensus 97.9 4.1E-05 8.9E-10 73.2 7.6 101 195-295 541-643 (674)
173 smart00489 DEXDc3 DEAD-like he 97.7 0.0001 2.2E-09 64.0 7.5 47 1-47 31-84 (289)
174 smart00488 DEXDc2 DEAD-like he 97.7 0.0001 2.2E-09 64.0 7.5 47 1-47 31-84 (289)
175 smart00492 HELICc3 helicase su 97.6 0.00076 1.7E-08 51.6 9.5 52 221-272 25-79 (141)
176 KOG0391|consensus 97.6 0.00016 3.6E-09 70.9 6.8 128 5-140 644-776 (1958)
177 PF14617 CMS1: U3-containing 9 97.6 0.00022 4.8E-09 59.7 6.8 87 21-108 123-211 (252)
178 smart00491 HELICc2 helicase su 97.5 0.00079 1.7E-08 51.7 8.5 94 206-299 4-138 (142)
179 PF13871 Helicase_C_4: Helicas 97.4 0.00057 1.2E-08 58.0 7.0 57 234-290 52-116 (278)
180 KOG0921|consensus 97.1 0.0014 3E-08 63.1 7.2 105 193-298 643-772 (1282)
181 PRK15483 type III restriction- 97.0 0.0029 6.2E-08 62.7 8.3 73 243-315 501-583 (986)
182 COG3587 Restriction endonuclea 96.8 0.019 4.1E-07 55.5 12.0 72 243-314 483-567 (985)
183 PF13872 AAA_34: P-loop contai 96.6 0.0048 1E-07 52.8 6.0 116 24-145 91-226 (303)
184 PRK11747 dinG ATP-dependent DN 96.5 0.0066 1.4E-07 59.5 6.9 38 1-41 53-95 (697)
185 KOG0701|consensus 96.5 0.0023 4.9E-08 66.2 3.8 93 194-286 293-397 (1606)
186 PRK10917 ATP-dependent DNA hel 96.3 0.03 6.5E-07 54.9 10.0 79 192-270 309-392 (681)
187 PF09848 DUF2075: Uncharacteri 96.0 0.014 3E-07 52.5 5.8 86 4-112 10-97 (352)
188 KOG0298|consensus 96.0 0.019 4.1E-07 57.7 6.8 118 23-145 419-556 (1394)
189 PF13086 AAA_11: AAA domain; P 95.7 0.034 7.4E-07 46.5 6.8 46 1-46 21-75 (236)
190 TIGR00643 recG ATP-dependent D 95.7 0.062 1.3E-06 52.3 9.3 78 192-269 283-365 (630)
191 COG1199 DinG Rad3-related DNA 95.6 0.0092 2E-07 58.4 3.2 44 1-47 38-86 (654)
192 PRK05580 primosome assembly pr 95.6 0.13 2.8E-06 50.4 11.0 91 179-270 174-267 (679)
193 TIGR00595 priA primosomal prot 95.5 0.13 2.8E-06 48.5 10.4 78 192-270 24-102 (505)
194 COG1110 Reverse gyrase [DNA re 95.5 0.065 1.4E-06 53.0 8.3 72 181-252 113-190 (1187)
195 PRK14873 primosome assembly pr 95.4 0.18 3.8E-06 49.1 10.9 92 178-270 171-266 (665)
196 TIGR00580 mfd transcription-re 95.3 0.12 2.5E-06 52.3 9.5 79 192-270 499-582 (926)
197 PF12340 DUF3638: Protein of u 95.0 0.089 1.9E-06 43.5 6.6 76 10-88 58-144 (229)
198 COG1200 RecG RecG-like helicas 95.0 0.19 4.1E-06 47.8 9.5 85 184-268 301-391 (677)
199 KOG1513|consensus 94.9 0.022 4.7E-07 54.6 3.0 55 235-289 849-911 (1300)
200 PRK10689 transcription-repair 94.3 0.21 4.5E-06 51.8 8.6 78 192-269 648-730 (1147)
201 PF13604 AAA_30: AAA domain; P 94.0 0.046 1E-06 44.6 2.9 99 2-137 23-129 (196)
202 COG1197 Mfd Transcription-repa 93.9 0.34 7.3E-06 49.1 9.0 79 189-267 639-722 (1139)
203 COG1198 PriA Primosomal protei 93.9 0.4 8.7E-06 46.8 9.2 93 174-267 224-319 (730)
204 KOG1802|consensus 93.8 0.1 2.2E-06 49.3 4.8 54 1-60 429-486 (935)
205 COG0513 SrmB Superfamily II DN 93.6 0.45 9.8E-06 45.1 9.1 70 196-269 102-182 (513)
206 KOG0339|consensus 93.5 0.89 1.9E-05 41.9 9.9 70 194-267 296-376 (731)
207 KOG1133|consensus 93.4 2.7 5.8E-05 40.4 13.2 112 185-300 622-780 (821)
208 KOG1803|consensus 93.2 0.063 1.4E-06 50.0 2.5 44 1-44 205-249 (649)
209 PRK14701 reverse gyrase; Provi 93.1 0.48 1E-05 50.9 9.1 61 192-252 121-187 (1638)
210 KOG0338|consensus 93.1 0.76 1.6E-05 42.3 9.0 80 193-276 252-342 (691)
211 PF10593 Z1: Z1 domain; Inter 93.0 0.63 1.4E-05 39.1 8.0 88 208-301 102-194 (239)
212 PF13245 AAA_19: Part of AAA d 92.7 0.13 2.7E-06 34.7 2.9 42 2-44 15-62 (76)
213 PF06733 DEAD_2: DEAD_2; Inte 92.7 0.075 1.6E-06 42.4 2.1 41 72-112 117-159 (174)
214 cd00268 DEADc DEAD-box helicas 92.7 4.6 0.0001 32.8 12.9 75 192-270 68-152 (203)
215 PF05127 Helicase_RecD: Helica 92.4 0.22 4.7E-06 39.6 4.3 120 2-140 2-124 (177)
216 KOG1132|consensus 92.4 0.55 1.2E-05 46.0 7.6 78 193-271 561-655 (945)
217 KOG0330|consensus 92.1 1 2.2E-05 40.0 8.3 83 180-266 116-209 (476)
218 PF03354 Terminase_1: Phage Te 91.9 0.29 6.3E-06 46.0 5.2 108 20-135 50-159 (477)
219 COG1111 MPH1 ERCC4-like helica 91.8 2 4.4E-05 39.6 10.1 133 188-326 54-200 (542)
220 TIGR00614 recQ_fam ATP-depende 91.6 0.76 1.6E-05 43.1 7.7 77 193-269 51-135 (470)
221 PRK11776 ATP-dependent RNA hel 91.5 2.2 4.8E-05 39.9 10.7 74 194-271 73-157 (460)
222 PRK11634 ATP-dependent RNA hel 90.8 2.9 6.3E-05 40.8 11.0 74 192-269 73-157 (629)
223 PRK14974 cell division protein 90.8 1.3 2.8E-05 39.3 7.9 54 97-150 221-275 (336)
224 PHA03368 DNA packaging termina 90.6 0.89 1.9E-05 43.7 6.9 104 24-140 284-391 (738)
225 PRK12898 secA preprotein trans 90.5 2.4 5.3E-05 41.1 9.9 70 185-261 136-209 (656)
226 TIGR00376 DNA helicase, putati 90.4 0.52 1.1E-05 45.9 5.4 43 1-46 177-223 (637)
227 PF13401 AAA_22: AAA domain; P 90.4 0.72 1.6E-05 34.5 5.2 37 100-139 89-125 (131)
228 TIGR01447 recD exodeoxyribonuc 90.1 1.9 4.2E-05 41.5 8.9 96 25-138 194-295 (586)
229 TIGR01054 rgy reverse gyrase. 89.6 1.1 2.4E-05 46.8 7.3 78 192-269 120-207 (1171)
230 KOG0331|consensus 89.2 1.7 3.7E-05 40.6 7.6 82 10-103 329-414 (519)
231 PRK10875 recD exonuclease V su 89.2 1.3 2.9E-05 42.8 7.1 96 25-138 200-301 (615)
232 TIGR01389 recQ ATP-dependent D 88.3 2.1 4.5E-05 41.6 7.9 59 193-251 53-111 (591)
233 COG1875 NYN ribonuclease and A 88.1 0.3 6.6E-06 43.0 1.8 34 3-37 253-289 (436)
234 KOG0347|consensus 87.9 2.4 5.3E-05 39.6 7.4 72 195-270 265-349 (731)
235 PRK11192 ATP-dependent RNA hel 87.7 3 6.5E-05 38.7 8.4 74 193-270 73-156 (434)
236 TIGR00631 uvrb excinuclease AB 87.6 8 0.00017 37.9 11.3 80 21-110 439-522 (655)
237 PRK05642 DNA replication initi 87.3 4.3 9.3E-05 34.1 8.3 68 73-140 72-140 (234)
238 COG4098 comFA Superfamily II D 87.0 2 4.4E-05 37.6 6.1 93 13-113 294-388 (441)
239 KOG0298|consensus 86.9 1.9 4.1E-05 44.2 6.7 98 190-291 1218-1315(1394)
240 PRK04537 ATP-dependent RNA hel 86.7 3.5 7.7E-05 39.7 8.4 74 24-107 257-334 (572)
241 PRK12723 flagellar biosynthesi 86.6 2.6 5.7E-05 38.2 7.0 86 52-141 206-299 (388)
242 KOG1805|consensus 86.0 1.4 3.1E-05 43.8 5.2 98 5-112 695-810 (1100)
243 COG3421 Uncharacterized protei 85.8 2 4.3E-05 40.6 5.7 107 1-112 1-126 (812)
244 smart00382 AAA ATPases associa 85.7 1.4 3E-05 32.9 4.3 37 1-37 6-43 (148)
245 PF00308 Bac_DnaA: Bacterial d 85.6 5.1 0.00011 33.2 7.8 113 28-143 10-144 (219)
246 cd01524 RHOD_Pyr_redox Member 85.0 1.8 3.8E-05 30.0 4.2 36 193-228 51-86 (90)
247 KOG0350|consensus 84.7 3.1 6.8E-05 38.4 6.4 79 193-271 215-305 (620)
248 PF00448 SRP54: SRP54-type pro 84.6 8.4 0.00018 31.3 8.5 122 2-147 6-133 (196)
249 PRK04837 ATP-dependent RNA hel 84.3 3.7 8E-05 38.0 7.1 72 25-106 256-331 (423)
250 PRK11057 ATP-dependent DNA hel 84.1 4.4 9.5E-05 39.5 7.8 59 193-251 65-123 (607)
251 PLN03137 ATP-dependent DNA hel 84.1 4.5 9.9E-05 41.7 7.9 59 193-251 500-560 (1195)
252 PRK08084 DNA replication initi 84.1 6.8 0.00015 32.9 8.0 98 42-140 34-141 (235)
253 cd00079 HELICc Helicase superf 83.8 7.5 0.00016 28.6 7.5 76 23-108 27-106 (131)
254 PF00270 DEAD: DEAD/DEAH box h 83.8 13 0.00028 28.9 9.2 74 192-269 43-127 (169)
255 KOG0329|consensus 83.7 5.4 0.00012 33.5 6.9 111 194-311 111-237 (387)
256 COG4626 Phage terminase-like p 83.1 2 4.3E-05 40.3 4.6 105 22-137 116-223 (546)
257 PRK10590 ATP-dependent RNA hel 82.8 6.9 0.00015 36.6 8.3 73 194-270 76-158 (456)
258 COG1205 Distinct helicase fami 82.6 22 0.00047 36.2 12.0 121 194-318 116-259 (851)
259 TIGR00963 secA preprotein tran 82.5 7.6 0.00017 38.3 8.5 62 185-252 89-154 (745)
260 TIGR00604 rad3 DNA repair heli 82.4 1.4 3E-05 43.7 3.7 47 1-48 33-84 (705)
261 TIGR03420 DnaA_homol_Hda DnaA 82.4 12 0.00026 31.0 8.9 99 41-139 26-132 (226)
262 PRK09401 reverse gyrase; Revie 82.0 6.5 0.00014 41.3 8.4 78 192-269 122-209 (1176)
263 KOG1132|consensus 82.0 60 0.0013 32.7 14.2 40 70-110 218-259 (945)
264 TIGR01448 recD_rel helicase, p 81.8 2.7 5.9E-05 41.7 5.4 38 97-138 415-452 (720)
265 COG0556 UvrB Helicase subunit 81.6 1.5 3.3E-05 40.8 3.3 47 3-51 38-84 (663)
266 KOG0344|consensus 81.6 13 0.00028 35.1 9.2 76 24-108 387-466 (593)
267 cd00032 CASc Caspase, interleu 81.6 27 0.00059 29.4 10.8 85 192-282 8-108 (243)
268 PF02302 PTS_IIB: PTS system, 81.4 3.9 8.5E-05 28.2 4.8 58 26-86 1-59 (90)
269 cd01523 RHOD_Lact_B Member of 81.4 2.5 5.5E-05 29.8 3.9 37 192-228 60-96 (100)
270 PRK01297 ATP-dependent RNA hel 81.2 15 0.00032 34.6 10.0 73 194-269 163-245 (475)
271 PRK13766 Hef nuclease; Provisi 81.1 24 0.00053 35.6 12.0 123 191-319 56-193 (773)
272 TIGR03817 DECH_helic helicase/ 81.1 11 0.00024 37.6 9.4 74 192-270 80-166 (742)
273 smart00450 RHOD Rhodanese Homo 81.0 4.3 9.3E-05 28.1 5.0 40 190-229 53-93 (100)
274 PTZ00110 helicase; Provisional 80.5 9.3 0.0002 36.7 8.4 72 23-104 376-451 (545)
275 cd01529 4RHOD_Repeats Member o 79.8 4.2 9.1E-05 28.5 4.5 37 192-228 55-92 (96)
276 COG0514 RecQ Superfamily II DN 79.3 6.2 0.00013 37.8 6.6 123 193-317 57-193 (590)
277 PRK09694 helicase Cas3; Provis 78.8 7.5 0.00016 39.4 7.4 79 22-108 558-648 (878)
278 PRK06893 DNA replication initi 78.5 16 0.00035 30.5 8.3 46 96-141 89-136 (229)
279 PRK13104 secA preprotein trans 77.4 14 0.00029 37.4 8.5 63 184-252 114-180 (896)
280 PRK14087 dnaA chromosomal repl 76.6 18 0.0004 33.7 8.8 111 26-140 115-249 (450)
281 KOG0340|consensus 76.5 8.1 0.00017 34.2 5.9 55 193-251 75-133 (442)
282 PRK14722 flhF flagellar biosyn 76.3 10 0.00022 34.3 6.9 69 78-150 199-269 (374)
283 KOG1131|consensus 76.2 4.6 0.0001 37.6 4.6 31 242-272 589-623 (755)
284 PHA03333 putative ATPase subun 76.1 8.7 0.00019 37.4 6.6 28 24-51 216-243 (752)
285 PRK15483 type III restriction- 76.1 7.9 0.00017 39.4 6.6 135 2-141 64-240 (986)
286 PRK12422 chromosomal replicati 75.9 38 0.00083 31.6 10.7 120 25-144 110-250 (445)
287 cd05566 PTS_IIB_galactitol PTS 75.7 12 0.00025 25.8 5.8 57 25-84 1-58 (89)
288 PRK08727 hypothetical protein; 75.2 22 0.00047 29.8 8.3 89 54-142 42-139 (233)
289 TIGR01970 DEAH_box_HrpB ATP-de 75.1 17 0.00037 36.7 8.7 73 24-103 209-285 (819)
290 cd01120 RecA-like_NTPases RecA 74.9 4.8 0.0001 31.0 4.1 17 96-112 83-99 (165)
291 TIGR02768 TraA_Ti Ti-type conj 74.8 5 0.00011 40.0 4.9 39 95-136 436-474 (744)
292 PRK04296 thymidine kinase; Pro 74.7 22 0.00047 28.7 7.9 28 80-110 63-90 (190)
293 PLN00206 DEAD-box ATP-dependen 74.7 13 0.00029 35.4 7.6 72 24-104 367-442 (518)
294 COG2909 MalT ATP-dependent tra 74.6 3.1 6.8E-05 41.0 3.3 44 97-140 128-171 (894)
295 PRK14088 dnaA chromosomal repl 74.6 44 0.00096 31.1 10.8 115 27-144 106-242 (440)
296 cd01532 4RHOD_Repeat_1 Member 74.3 6.9 0.00015 27.2 4.3 36 193-228 50-88 (92)
297 PRK05298 excinuclease ABC subu 73.9 51 0.0011 32.5 11.5 80 21-110 443-526 (652)
298 cd01534 4RHOD_Repeat_3 Member 73.7 5.9 0.00013 27.6 3.9 36 193-228 56-91 (95)
299 smart00115 CASc Caspase, inter 73.7 54 0.0012 27.6 10.9 84 192-281 7-106 (241)
300 cd01518 RHOD_YceA Member of th 73.6 8.5 0.00018 27.2 4.7 38 191-228 59-97 (101)
301 COG1435 Tdk Thymidine kinase [ 73.1 22 0.00048 28.8 7.2 75 50-126 30-109 (201)
302 PHA03372 DNA packaging termina 73.0 16 0.00035 35.1 7.3 111 10-139 219-337 (668)
303 PF05621 TniB: Bacterial TniB 72.9 8.5 0.00018 33.5 5.2 19 96-114 143-161 (302)
304 smart00487 DEXDc DEAD-like hel 72.9 44 0.00095 26.3 9.5 72 193-268 54-136 (201)
305 cd01521 RHOD_PspE2 Member of t 72.7 7.2 0.00016 28.1 4.2 38 192-229 63-102 (110)
306 cd00133 PTS_IIB PTS_IIB: subun 72.7 23 0.0005 23.5 6.7 54 26-83 1-55 (84)
307 KOG0389|consensus 72.6 29 0.00063 34.4 9.0 72 181-255 436-511 (941)
308 PRK00771 signal recognition pa 72.3 9.7 0.00021 35.3 5.8 52 99-150 176-228 (437)
309 TIGR01547 phage_term_2 phage t 72.2 6.2 0.00013 36.1 4.6 119 23-151 31-152 (396)
310 PRK13767 ATP-dependent helicas 72.1 24 0.00052 36.2 9.1 77 24-106 284-366 (876)
311 PF07279 DUF1442: Protein of u 71.8 6.1 0.00013 32.3 3.9 24 75-105 98-122 (218)
312 COG3973 Superfamily I DNA and 71.4 19 0.00041 34.5 7.3 123 131-271 590-717 (747)
313 PRK06921 hypothetical protein; 71.1 11 0.00024 32.4 5.6 14 96-109 175-188 (266)
314 cd01444 GlpE_ST GlpE sulfurtra 70.8 16 0.00035 25.2 5.6 37 192-228 55-92 (96)
315 TIGR03158 cas3_cyano CRISPR-as 70.7 18 0.00039 32.6 7.1 71 24-105 272-342 (357)
316 TIGR01587 cas3_core CRISPR-ass 70.5 12 0.00027 33.5 6.2 75 23-106 221-303 (358)
317 PRK09751 putative ATP-dependen 70.4 23 0.00049 38.3 8.6 73 193-269 37-132 (1490)
318 PF00580 UvrD-helicase: UvrD/R 69.8 4.4 9.5E-05 35.4 3.0 102 1-108 17-125 (315)
319 PF04364 DNA_pol3_chi: DNA pol 69.8 37 0.00081 25.7 7.7 81 181-272 15-97 (137)
320 KOG1513|consensus 69.8 9.7 0.00021 37.5 5.3 116 21-139 315-454 (1300)
321 cd01526 RHOD_ThiF Member of th 69.8 6.9 0.00015 28.9 3.6 38 192-229 71-110 (122)
322 cd01527 RHOD_YgaP Member of th 69.7 9 0.0002 26.9 4.1 37 192-228 53-90 (99)
323 PRK06620 hypothetical protein; 68.9 37 0.0008 28.0 8.1 83 22-110 12-97 (214)
324 PF13173 AAA_14: AAA domain 68.7 8.6 0.00019 28.7 4.0 37 98-138 61-97 (128)
325 PRK09200 preprotein translocas 68.7 22 0.00048 35.6 7.7 62 184-251 110-176 (790)
326 PRK11664 ATP-dependent RNA hel 68.4 28 0.00062 35.2 8.5 73 24-103 212-288 (812)
327 COG0593 DnaA ATPase involved i 68.2 47 0.001 30.4 9.1 122 21-144 82-223 (408)
328 PRK13103 secA preprotein trans 68.1 31 0.00066 35.0 8.5 66 181-252 111-180 (913)
329 PRK12899 secA preprotein trans 68.0 28 0.00061 35.4 8.2 55 192-252 134-192 (970)
330 PF05872 DUF853: Bacterial pro 67.6 13 0.00027 34.4 5.3 47 95-141 251-302 (502)
331 cd00046 DEXDc DEAD-like helica 67.6 45 0.00098 24.3 8.2 57 192-252 29-88 (144)
332 KOG0333|consensus 67.2 13 0.00028 34.8 5.4 69 25-103 518-590 (673)
333 cd01528 RHOD_2 Member of the R 67.0 11 0.00023 26.7 4.1 38 192-229 57-95 (101)
334 PRK06835 DNA replication prote 66.9 46 0.00099 29.6 8.7 109 34-142 162-292 (329)
335 cd00009 AAA The AAA+ (ATPases 66.9 11 0.00023 28.2 4.3 14 97-110 83-96 (151)
336 PRK07003 DNA polymerase III su 66.9 5.6 0.00012 39.3 3.2 39 97-136 118-156 (830)
337 PHA02653 RNA helicase NPH-II; 66.9 27 0.00058 34.5 7.8 72 24-103 395-469 (675)
338 PRK13889 conjugal transfer rel 66.8 9.8 0.00021 39.1 5.0 23 193-215 556-578 (988)
339 PHA02533 17 large terminase pr 66.8 12 0.00025 35.8 5.3 78 24-112 104-183 (534)
340 PRK07952 DNA replication prote 66.7 16 0.00034 31.0 5.5 45 96-140 160-206 (244)
341 PRK05703 flhF flagellar biosyn 66.7 32 0.00068 31.9 7.9 68 79-150 284-354 (424)
342 PF02463 SMC_N: RecF/RecN/SMC 66.6 7.4 0.00016 32.2 3.6 41 97-137 157-197 (220)
343 PRK14086 dnaA chromosomal repl 66.4 56 0.0012 31.8 9.6 114 26-142 288-423 (617)
344 cd01525 RHOD_Kc Member of the 66.3 13 0.00028 26.3 4.4 36 193-228 65-101 (105)
345 PRK12323 DNA polymerase III su 66.3 6.5 0.00014 38.2 3.4 41 96-137 122-162 (700)
346 cd01447 Polysulfide_ST Polysul 65.9 7.1 0.00015 27.5 3.0 37 192-228 60-97 (103)
347 PTZ00424 helicase 45; Provisio 65.9 30 0.00064 31.6 7.7 72 25-106 268-343 (401)
348 COG1203 CRISPR-associated heli 65.7 18 0.00039 36.2 6.6 62 17-82 433-502 (733)
349 PRK11889 flhF flagellar biosyn 65.6 21 0.00046 32.6 6.3 76 74-150 296-374 (436)
350 KOG0343|consensus 65.6 79 0.0017 30.2 9.9 54 192-251 140-198 (758)
351 cd01449 TST_Repeat_2 Thiosulfa 65.3 16 0.00035 26.5 4.9 37 192-228 77-114 (118)
352 cd01533 4RHOD_Repeat_2 Member 65.2 11 0.00025 27.0 4.0 38 192-229 65-104 (109)
353 cd01519 RHOD_HSP67B2 Member of 65.1 9.7 0.00021 27.0 3.6 37 192-228 65-102 (106)
354 cd05563 PTS_IIB_ascorbate PTS_ 65.1 29 0.00062 23.6 5.8 53 26-83 1-54 (86)
355 cd01520 RHOD_YbbB Member of th 65.1 11 0.00024 28.1 4.0 38 192-229 85-123 (128)
356 PHA02558 uvsW UvsW helicase; P 65.0 27 0.00059 33.2 7.4 73 24-105 344-420 (501)
357 PRK07413 hypothetical protein; 64.8 33 0.00072 31.1 7.4 99 96-194 123-228 (382)
358 KOG3089|consensus 64.0 9 0.0002 31.3 3.3 34 74-107 196-229 (271)
359 KOG0342|consensus 64.0 40 0.00088 31.4 7.7 55 193-251 154-213 (543)
360 TIGR02760 TraI_TIGR conjugativ 63.8 2.1E+02 0.0045 32.7 14.4 141 95-243 526-686 (1960)
361 TIGR00362 DnaA chromosomal rep 63.6 53 0.0011 30.2 8.9 110 27-140 111-242 (405)
362 PRK08116 hypothetical protein; 63.5 11 0.00023 32.5 4.0 48 96-143 176-225 (268)
363 PRK00149 dnaA chromosomal repl 63.2 58 0.0013 30.4 9.2 111 26-140 122-254 (450)
364 PF14617 CMS1: U3-containing 9 63.1 42 0.00091 28.5 7.3 69 195-266 128-206 (252)
365 PRK13826 Dtr system oriT relax 62.9 15 0.00032 38.3 5.4 23 193-215 589-611 (1102)
366 KOG0989|consensus 62.7 9.6 0.00021 33.1 3.5 45 95-140 126-170 (346)
367 KOG0334|consensus 62.6 30 0.00066 35.2 7.3 53 195-251 440-496 (997)
368 PRK06526 transposase; Provisio 62.5 12 0.00025 32.0 4.1 69 73-141 125-203 (254)
369 PRK14958 DNA polymerase III su 62.5 7.2 0.00016 37.0 3.0 39 97-136 118-156 (509)
370 PF05876 Terminase_GpA: Phage 62.3 14 0.00031 35.5 5.0 82 25-112 63-148 (557)
371 PRK12904 preprotein translocas 62.2 44 0.00095 33.7 8.3 64 183-252 112-179 (830)
372 cd01535 4RHOD_Repeat_4 Member 62.1 28 0.0006 26.7 5.7 37 193-229 49-86 (145)
373 KOG0328|consensus 61.9 24 0.00051 30.4 5.5 69 25-103 267-339 (400)
374 COG1419 FlhF Flagellar GTP-bin 61.4 36 0.00078 31.0 7.0 70 78-151 265-336 (407)
375 KOG0337|consensus 60.9 41 0.00089 30.8 7.1 84 182-269 78-172 (529)
376 PRK04195 replication factor C 60.7 97 0.0021 29.3 10.2 78 35-112 21-112 (482)
377 cd00158 RHOD Rhodanese Homolog 60.7 20 0.00043 24.1 4.4 38 191-228 48-86 (89)
378 cd01448 TST_Repeat_1 Thiosulfa 60.4 20 0.00043 26.3 4.6 38 192-229 78-117 (122)
379 PHA02544 44 clamp loader, smal 59.7 16 0.00035 32.1 4.7 40 97-136 99-138 (316)
380 COG2519 GCD14 tRNA(1-methylade 59.6 53 0.0011 27.8 7.2 39 97-141 162-200 (256)
381 cd00561 CobA_CobO_BtuR ATP:cor 57.6 19 0.00042 28.1 4.2 52 96-147 93-146 (159)
382 TIGR01425 SRP54_euk signal rec 57.5 69 0.0015 29.7 8.3 54 97-150 181-235 (429)
383 PF11496 HDA2-3: Class II hist 55.8 97 0.0021 27.1 8.6 124 178-301 95-246 (297)
384 KOG0348|consensus 55.3 21 0.00046 33.6 4.5 74 193-267 211-293 (708)
385 PRK07764 DNA polymerase III su 55.0 18 0.0004 36.5 4.5 39 97-136 119-157 (824)
386 PRK10287 thiosulfate:cyanide s 54.7 28 0.00061 24.9 4.4 36 193-228 60-95 (104)
387 PRK14964 DNA polymerase III su 54.7 93 0.002 29.5 8.8 40 96-136 114-153 (491)
388 TIGR00708 cobA cob(I)alamin ad 53.5 18 0.0004 28.7 3.5 52 96-147 95-148 (173)
389 PRK10310 PTS system galactitol 53.4 75 0.0016 22.2 6.5 57 25-84 3-60 (94)
390 COG4152 ABC-type uncharacteriz 53.1 49 0.0011 28.1 5.9 104 146-267 141-248 (300)
391 COG0470 HolB ATPase involved i 52.6 40 0.00086 29.6 6.0 40 97-137 108-147 (325)
392 PRK09087 hypothetical protein; 52.3 1.4E+02 0.003 24.9 9.5 108 24-141 19-129 (226)
393 PRK08903 DnaA regulatory inact 51.5 1.4E+02 0.003 24.7 10.2 83 53-140 42-132 (227)
394 PRK07994 DNA polymerase III su 51.3 13 0.00028 36.3 2.8 38 97-135 118-155 (647)
395 TIGR02981 phageshock_pspE phag 51.2 34 0.00073 24.3 4.3 36 193-228 58-93 (101)
396 PF05707 Zot: Zonular occluden 51.2 25 0.00055 28.4 4.1 51 98-149 79-135 (193)
397 PRK08181 transposase; Validate 51.0 38 0.00083 29.1 5.3 68 73-140 133-210 (269)
398 COG1444 Predicted P-loop ATPas 50.9 70 0.0015 31.9 7.5 97 24-140 261-357 (758)
399 PF00004 AAA: ATPase family as 50.9 30 0.00065 25.4 4.3 16 99-114 59-74 (132)
400 TIGR02621 cas3_GSU0051 CRISPR- 50.3 46 0.001 33.7 6.4 54 194-251 62-143 (844)
401 cd01445 TST_Repeats Thiosulfat 50.0 43 0.00093 25.4 5.0 46 183-228 82-134 (138)
402 PRK12727 flagellar biosynthesi 49.8 1.1E+02 0.0023 29.4 8.3 55 81-140 415-470 (559)
403 PRK02362 ski2-like helicase; P 49.7 29 0.00063 34.8 5.0 72 192-270 66-146 (737)
404 PF15586 Imm47: Immunity prote 49.6 22 0.00047 26.1 3.1 34 74-108 44-77 (116)
405 PF01751 Toprim: Toprim domain 48.6 17 0.00037 25.7 2.4 61 196-256 1-73 (100)
406 cd01122 GP4d_helicase GP4d_hel 48.5 64 0.0014 27.5 6.5 16 97-112 139-154 (271)
407 PRK13107 preprotein translocas 48.5 85 0.0018 32.0 7.8 66 181-252 111-180 (908)
408 PRK07414 cob(I)yrinic acid a,c 48.4 26 0.00055 28.0 3.5 51 96-146 113-165 (178)
409 PRK14956 DNA polymerase III su 48.4 20 0.00044 33.5 3.4 22 97-118 120-141 (484)
410 PRK10867 signal recognition pa 48.2 98 0.0021 28.8 7.8 55 97-151 182-237 (433)
411 PLN02160 thiosulfate sulfurtra 48.2 31 0.00068 26.1 4.0 38 192-229 80-118 (136)
412 KOG0346|consensus 48.1 59 0.0013 30.0 6.0 74 181-258 75-165 (569)
413 cd03115 SRP The signal recogni 47.7 69 0.0015 25.1 6.1 53 97-149 81-134 (173)
414 cd01522 RHOD_1 Member of the R 47.4 32 0.00069 25.1 3.8 38 192-229 63-101 (117)
415 PF05970 PIF1: PIF1-like helic 47.3 10 0.00022 34.3 1.3 21 96-116 100-120 (364)
416 cd03028 GRX_PICOT_like Glutare 47.2 92 0.002 21.4 6.6 46 192-237 6-57 (90)
417 PF13177 DNA_pol3_delta2: DNA 47.1 43 0.00094 26.2 4.8 42 97-139 101-142 (162)
418 PRK05986 cob(I)alamin adenolsy 46.9 28 0.0006 28.2 3.6 52 96-147 113-166 (191)
419 KOG0345|consensus 46.8 71 0.0015 29.7 6.4 70 195-267 81-163 (567)
420 PLN03025 replication factor C 46.5 27 0.0006 30.8 3.9 40 97-138 98-137 (319)
421 PRK05728 DNA polymerase III su 46.2 1.3E+02 0.0029 22.9 8.9 84 176-271 10-95 (142)
422 PRK00162 glpE thiosulfate sulf 46.1 34 0.00075 24.4 3.8 38 192-229 57-95 (108)
423 cd05565 PTS_IIB_lactose PTS_II 46.1 94 0.002 22.1 5.8 64 41-108 17-82 (99)
424 COG1204 Superfamily II helicas 46.1 72 0.0016 32.1 7.0 52 193-251 76-130 (766)
425 PRK14951 DNA polymerase III su 45.3 27 0.00059 34.0 3.9 39 97-136 123-161 (618)
426 cd03027 GRX_DEP Glutaredoxin ( 45.2 84 0.0018 20.4 6.6 55 195-249 2-57 (73)
427 cd05564 PTS_IIB_chitobiose_lic 45.1 1.1E+02 0.0023 21.5 6.2 65 41-108 16-81 (96)
428 PRK05320 rhodanese superfamily 45.1 45 0.00097 28.5 4.8 38 192-229 174-212 (257)
429 KOG0383|consensus 45.1 15 0.00032 36.0 2.1 76 180-256 616-696 (696)
430 cd03031 GRX_GRX_like Glutaredo 44.9 1.4E+02 0.0031 23.0 7.3 46 195-240 1-53 (147)
431 KOG1133|consensus 44.8 16 0.00034 35.5 2.1 38 74-112 323-362 (821)
432 TIGR03865 PQQ_CXXCW PQQ-depend 44.3 43 0.00094 26.2 4.3 38 192-229 115-154 (162)
433 TIGR03714 secA2 accessory Sec 44.1 95 0.0021 31.1 7.4 62 185-252 103-173 (762)
434 PRK04914 ATP-dependent helicas 43.8 1.1E+02 0.0025 31.6 8.1 73 24-105 493-571 (956)
435 COG2812 DnaX DNA polymerase II 43.5 15 0.00033 34.7 1.8 25 96-120 117-141 (515)
436 PRK14952 DNA polymerase III su 43.2 46 0.001 32.2 5.1 40 96-136 116-155 (584)
437 PF03808 Glyco_tran_WecB: Glyc 43.1 1.7E+02 0.0036 23.2 8.9 68 181-248 34-106 (172)
438 KOG0332|consensus 43.0 70 0.0015 28.8 5.6 69 25-103 331-403 (477)
439 TIGR00696 wecB_tagA_cpsF bacte 43.0 1.7E+02 0.0037 23.3 9.1 67 181-247 34-104 (177)
440 TIGR01967 DEAH_box_HrpA ATP-de 42.9 1.4E+02 0.0031 32.1 8.7 73 24-103 279-353 (1283)
441 cd06533 Glyco_transf_WecG_TagA 42.2 1.7E+02 0.0037 23.1 8.9 67 181-247 32-103 (171)
442 PRK11054 helD DNA helicase IV; 42.2 19 0.0004 35.7 2.3 58 1-58 213-275 (684)
443 PF00581 Rhodanese: Rhodanese- 42.0 40 0.00086 23.9 3.6 38 192-229 66-109 (113)
444 PF02562 PhoH: PhoH-like prote 41.9 39 0.00084 27.7 3.8 34 100-137 121-154 (205)
445 PRK10536 hypothetical protein; 41.7 41 0.00089 28.7 4.0 32 100-135 178-209 (262)
446 PRK12326 preprotein translocas 41.6 1.6E+02 0.0034 29.5 8.3 57 181-237 107-167 (764)
447 PRK14965 DNA polymerase III su 41.4 1.3E+02 0.0029 29.2 7.9 40 96-136 117-156 (576)
448 PF02572 CobA_CobO_BtuR: ATP:c 41.1 36 0.00078 27.0 3.4 52 96-147 94-147 (172)
449 PTZ00112 origin recognition co 40.8 4.2E+02 0.009 27.7 11.0 17 97-113 868-884 (1164)
450 PRK14955 DNA polymerase III su 40.6 1.9E+02 0.004 26.6 8.5 39 96-135 125-163 (397)
451 PRK00254 ski2-like helicase; P 40.5 1E+02 0.0022 30.9 7.3 71 193-270 68-147 (720)
452 cd05567 PTS_IIB_mannitol PTS_I 40.2 1E+02 0.0023 21.0 5.3 71 26-106 2-73 (87)
453 cd01124 KaiC KaiC is a circadi 39.8 59 0.0013 25.7 4.7 46 1-47 3-49 (187)
454 COG0079 HisC Histidinol-phosph 39.8 2E+02 0.0044 25.9 8.4 74 25-109 100-187 (356)
455 TIGR00064 ftsY signal recognit 39.7 1.9E+02 0.0042 24.9 8.0 53 97-149 153-212 (272)
456 PF12683 DUF3798: Protein of u 39.6 41 0.0009 28.7 3.6 126 131-275 4-144 (275)
457 PF13304 AAA_21: AAA domain; P 39.6 41 0.00089 28.0 3.9 38 100-137 259-297 (303)
458 TIGR00853 pts-lac PTS system, 39.5 1.3E+02 0.0029 21.0 6.7 80 25-108 4-85 (95)
459 KOG0351|consensus 39.4 76 0.0017 32.7 6.1 124 194-318 305-448 (941)
460 PRK14960 DNA polymerase III su 39.4 36 0.00078 33.4 3.7 39 97-136 117-155 (702)
461 PHA00350 putative assembly pro 39.1 41 0.0009 30.7 3.9 14 100-113 83-96 (399)
462 PRK14969 DNA polymerase III su 39.0 30 0.00066 33.0 3.2 40 96-136 117-156 (527)
463 PRK10919 ATP-dependent DNA hel 38.6 19 0.0004 35.7 1.7 32 194-225 343-374 (672)
464 PF02142 MGS: MGS-like domain 38.6 33 0.00072 23.9 2.6 43 210-252 23-69 (95)
465 cd01530 Cdc25 Cdc25 phosphatas 38.6 48 0.001 24.4 3.6 37 192-228 67-117 (121)
466 COG2519 GCD14 tRNA(1-methylade 38.6 79 0.0017 26.8 5.1 38 181-218 175-213 (256)
467 COG1196 Smc Chromosome segrega 38.2 55 0.0012 34.9 5.2 52 96-149 1086-1137(1163)
468 PRK12377 putative replication 38.0 2.5E+02 0.0055 23.8 9.9 64 74-137 129-204 (248)
469 PRK14961 DNA polymerase III su 37.5 32 0.00069 31.1 3.0 39 97-136 118-156 (363)
470 COG3972 Superfamily I DNA and 37.4 1.6E+02 0.0034 27.9 7.1 30 19-48 201-230 (660)
471 cd01400 6PGL 6PGL: 6-Phosphogl 36.5 1.3E+02 0.0029 24.8 6.3 57 34-108 5-62 (219)
472 PRK08691 DNA polymerase III su 36.4 51 0.0011 32.6 4.2 40 96-136 117-156 (709)
473 PRK04841 transcriptional regul 36.2 47 0.001 34.1 4.3 43 98-140 121-163 (903)
474 PRK14971 DNA polymerase III su 36.0 2E+02 0.0043 28.3 8.2 41 96-138 119-159 (614)
475 PRK09860 putative alcohol dehy 35.9 3.1E+02 0.0068 25.0 9.1 71 180-250 18-95 (383)
476 PRK06904 replicative DNA helic 35.8 62 0.0013 30.5 4.6 15 98-112 334-348 (472)
477 PRK06645 DNA polymerase III su 35.8 59 0.0013 30.9 4.5 22 96-117 126-147 (507)
478 COG2109 BtuR ATP:corrinoid ade 35.7 84 0.0018 25.4 4.6 52 97-148 121-174 (198)
479 PRK14949 DNA polymerase III su 35.6 51 0.0011 33.6 4.2 38 97-135 118-155 (944)
480 KOG0336|consensus 35.5 1.8E+02 0.004 26.7 7.1 57 191-251 292-351 (629)
481 PRK09111 DNA polymerase III su 35.4 39 0.00085 32.9 3.3 40 96-136 130-169 (598)
482 PRK11784 tRNA 2-selenouridine 35.4 1.5E+02 0.0032 26.7 6.7 48 192-240 87-135 (345)
483 TIGR00365 monothiol glutaredox 35.3 1.6E+02 0.0034 20.7 7.6 47 191-237 9-61 (97)
484 PRK08451 DNA polymerase III su 35.3 53 0.0012 31.4 4.1 40 96-136 115-154 (535)
485 PRK12906 secA preprotein trans 35.3 2.1E+02 0.0046 29.0 8.2 58 180-237 108-169 (796)
486 COG1168 MalY Bifunctional PLP- 35.1 69 0.0015 28.9 4.4 113 181-294 147-272 (388)
487 COG0074 SucD Succinyl-CoA synt 35.0 3E+02 0.0066 23.9 9.3 67 179-245 52-118 (293)
488 PRK04132 replication factor C 34.9 93 0.002 31.7 5.8 39 98-137 630-668 (846)
489 PF01182 Glucosamine_iso: Gluc 34.7 1.3E+02 0.0028 24.4 5.9 60 34-108 3-62 (199)
490 COG1484 DnaC DNA replication p 34.5 67 0.0015 27.4 4.3 17 96-112 165-181 (254)
491 PF12846 AAA_10: AAA-like doma 34.1 76 0.0016 27.3 4.8 43 97-139 219-263 (304)
492 PRK14954 DNA polymerase III su 34.1 1.6E+02 0.0035 28.9 7.2 40 96-136 125-164 (620)
493 PRK14959 DNA polymerase III su 33.9 58 0.0013 31.8 4.1 18 97-114 118-135 (624)
494 TIGR01198 pgl 6-phosphoglucono 33.8 1.7E+02 0.0037 24.5 6.6 53 38-108 14-66 (233)
495 COG0607 PspE Rhodanese-related 33.7 49 0.0011 23.3 3.0 37 192-228 60-97 (110)
496 PF10657 RC-P840_PscD: Photosy 33.5 50 0.0011 24.1 2.8 48 223-270 54-107 (144)
497 cd03418 GRX_GRXb_1_3_like Glut 33.4 1.3E+02 0.0029 19.3 7.0 44 196-239 2-46 (75)
498 PRK11131 ATP-dependent RNA hel 33.3 2E+02 0.0043 31.0 8.0 73 24-103 286-360 (1294)
499 TIGR00959 ffh signal recogniti 33.2 2.7E+02 0.0057 26.0 8.1 54 97-150 181-235 (428)
500 PRK06647 DNA polymerase III su 32.9 2.3E+02 0.0049 27.5 8.0 20 96-115 117-136 (563)
No 1
>KOG0326|consensus
Probab=100.00 E-value=8.6e-62 Score=396.41 Aligned_cols=324 Identities=77% Similarity=1.201 Sum_probs=314.8
Q ss_pred ccCCcchhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHH
Q psy13286 5 RQEPTQFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGR 84 (351)
Q Consensus 5 ~tgs~~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~ 84 (351)
|||++.+|+|.++.+.... -.+++++||++||.|..+.|+++.+..++++...+||++.++++..+....+++|+||++
T Consensus 135 KT~a~~IP~Lekid~~~~~-IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGR 213 (459)
T KOG0326|consen 135 KTAAYCIPVLEKIDPKKNV-IQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGR 213 (459)
T ss_pred CccceechhhhhcCccccc-eeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChh
Confidence 4555699999999988877 899999999999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCeEEeeccccc
Q psy13286 85 ILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELT 164 (351)
Q Consensus 85 l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
++++.+.+-.++++..++|+||||.+++.+|.+.+..++..+|+.+|++++|||+|-.+..|+.+++.+|+.+++-++..
T Consensus 214 IlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLt 293 (459)
T KOG0326|consen 214 ILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELT 293 (459)
T ss_pred HHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhh
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCc
Q psy13286 165 LKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLC 244 (351)
Q Consensus 165 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 244 (351)
..++.++|.++.+..|..+|..++....-.++||||+|...++.+|+.+...|+.+.++|+.|.++.|.++..+|++|.+
T Consensus 294 l~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~c 373 (459)
T KOG0326|consen 294 LKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKC 373 (459)
T ss_pred hcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcccc
Confidence 99999999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhccccCCCCcccc
Q psy13286 245 RNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIKSIPKVID 324 (351)
Q Consensus 245 ~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 324 (351)
+.||||+.+.+|+|++++++|||||+|+++++|+||+||+||.|..|.+|.++..+|...++++|+.+|+++..+|..+|
T Consensus 374 rnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 374 RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred ceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q psy13286 325 PALYV 329 (351)
Q Consensus 325 ~~~~~ 329 (351)
+.+|.
T Consensus 454 k~lyv 458 (459)
T KOG0326|consen 454 KSLYV 458 (459)
T ss_pred ccccc
Confidence 98774
No 2
>KOG0330|consensus
Probab=100.00 E-value=1.2e-58 Score=387.20 Aligned_cols=313 Identities=33% Similarity=0.580 Sum_probs=297.3
Q ss_pred ccCCcchhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHH
Q psy13286 5 RQEPTQFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGR 84 (351)
Q Consensus 5 ~tgs~~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~ 84 (351)
|||+++||++++|...... ++++||+|||||+.|+.+.+..++...|+++..+.||.+...+...+.+.++|+|+||++
T Consensus 111 KT~afaLPIl~~LL~~p~~-~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGr 189 (476)
T KOG0330|consen 111 KTGAFALPILQRLLQEPKL-FFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGR 189 (476)
T ss_pred chhhhHHHHHHHHHcCCCC-ceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHH
Confidence 4445699999999887666 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-ccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCeEEeecccc
Q psy13286 85 ILDLMD-KQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEEL 163 (351)
Q Consensus 85 l~~~l~-~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
|+++++ .+.+.+..++++|+||||++++++|...+..++..+|..+|.+++|||++..+..+...-+.+|..+......
T Consensus 190 L~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky 269 (476)
T KOG0330|consen 190 LWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY 269 (476)
T ss_pred HHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh
Confidence 999998 4667889999999999999999999999999999999999999999999999999998888999988887554
Q ss_pred -ccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcC
Q psy13286 164 -TLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG 242 (351)
Q Consensus 164 -~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 242 (351)
..+.+.+.|.+++...|...|..+++...+...||||++...+..++-.|+..|+.+..+||.|++..|.-.++.|++|
T Consensus 270 ~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~ 349 (476)
T KOG0330|consen 270 QTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG 349 (476)
T ss_pred cchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc
Confidence 6677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhccccCC
Q psy13286 243 LCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIKS 318 (351)
Q Consensus 243 ~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~~ 318 (351)
...||||||+.++|+|+|.+++|||||.|.+..+|+||+||.+|.|.+|.+|++++.+|...+.+||..+++...+
T Consensus 350 ~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 350 ARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred CCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876
No 3
>KOG0331|consensus
Probab=100.00 E-value=1.7e-57 Score=403.72 Aligned_cols=329 Identities=31% Similarity=0.515 Sum_probs=304.7
Q ss_pred cccccCCc-----chhhhcccCc-----CCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHH
Q psy13286 2 VQARQEPT-----QFLYLNKLTP-----AKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRI 71 (351)
Q Consensus 2 ~~a~tgs~-----~l~~l~~l~~-----~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 71 (351)
..|.|||| +||++.++.. ....++++|||+||||||.|+...+.++....++++.+++|+.+...+...+
T Consensus 133 ~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l 212 (519)
T KOG0331|consen 133 GIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDL 212 (519)
T ss_pred EEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHH
Confidence 35788884 8998888764 2444699999999999999999999999999999999999999999999999
Q ss_pred hCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhC-CCCCcEEEEEeeCcchHHHHHHHh
Q psy13286 72 YQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISIL-PHERQILLYSATFPLTVKNFMEKH 150 (351)
Q Consensus 72 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~~~~~~~ 150 (351)
.++.+|+|+||+++.++++.+..+++++.++|+||||+|++++|.+.+..++..+ +...|.+++|||+|..++.++..+
T Consensus 213 ~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~f 292 (519)
T KOG0331|consen 213 ERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDF 292 (519)
T ss_pred hcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 445589999999999999999999
Q ss_pred cCCCeEEeeccc---cccCCceEEEEEcCcccHHHHHHHHHhhC---CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEec
Q psy13286 151 LKDPYEINLMEE---LTLKGVTQYYAFVQERQKVHCLNTLFSKL---QINQSIIFCNSTQRVELLAKKITELGYCCYYIH 224 (351)
Q Consensus 151 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~ 224 (351)
+.++..+.+... ....++.+....++...|...+..++... .++++||||+++..|..++..|+..++++..+|
T Consensus 293 l~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iH 372 (519)
T KOG0331|consen 293 LNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIH 372 (519)
T ss_pred hcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeec
Confidence 999999988743 56778889999999888888888888755 467999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHH
Q psy13286 225 ARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYA 304 (351)
Q Consensus 225 ~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~ 304 (351)
|+.++.+|+.+++.|++|+..|||||+++++|+|+|++++|||||+|.+.++|+||+||.||.|+.|.+++|+...+...
T Consensus 373 Gd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 373 GDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKL 452 (519)
T ss_pred ccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCcccccccccc
Q psy13286 305 LHRIEKELGTEIKSIPKVIDPALYVA 330 (351)
Q Consensus 305 ~~~l~~~l~~~~~~~~~~~~~~~~~~ 330 (351)
...+.+.+....+.+|..+.......
T Consensus 453 a~~l~~~l~e~~q~v~~~l~~~~~~~ 478 (519)
T KOG0331|consen 453 ARELIKVLREAGQTVPPDLLEYARVS 478 (519)
T ss_pred HHHHHHHHHHccCCCChHHHHHHhhc
Confidence 99999999999999998887764443
No 4
>KOG0328|consensus
Probab=100.00 E-value=2.3e-57 Score=364.56 Aligned_cols=322 Identities=37% Similarity=0.655 Sum_probs=300.6
Q ss_pred ccccCCc---chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEE
Q psy13286 3 QARQEPT---QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLII 79 (351)
Q Consensus 3 ~a~tgs~---~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv 79 (351)
||.||++ .+.++..+...... -+++++.|||+|+.|+.+.+..++.+.++.+..+.|+.+..+.+..+..+.+++.
T Consensus 72 qSGTGKTa~~si~vlq~~d~~~r~-tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVs 150 (400)
T KOG0328|consen 72 QSGTGKTATFSISVLQSLDISVRE-TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVS 150 (400)
T ss_pred cCCCCceEEEEeeeeeecccccce-eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEee
Confidence 3445553 55566666555554 7899999999999999999999999999999999999999999988889999999
Q ss_pred EccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCeEEee
Q psy13286 80 ATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINL 159 (351)
Q Consensus 80 ~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 159 (351)
+||+++++++++..+....+.++|+||||.+++.+|...+-.+++.+|+..|++++|||+|..+.+..+.+..+|+.+-+
T Consensus 151 GtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilv 230 (400)
T KOG0328|consen 151 GTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILV 230 (400)
T ss_pred CCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred c-cccccCCceEEEEEcCcc-cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHH
Q psy13286 160 M-EELTLKGVTQYYAFVQER-QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFH 237 (351)
Q Consensus 160 ~-~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 237 (351)
. ++.+..++.+++..+..+ .|.+.|.++.....-.+++|||+++..+..+.+.++...+.+...||+|++++|+++++
T Consensus 231 krdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~ 310 (400)
T KOG0328|consen 231 KRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMN 310 (400)
T ss_pred ecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHH
Confidence 6 556777899999888766 49999999999988899999999999999999999999999999999999999999999
Q ss_pred HhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhccccC
Q psy13286 238 DFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIK 317 (351)
Q Consensus 238 ~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~ 317 (351)
+|++|+.+||++|++..+|+|+|.+++|||||+|...+.|+||+||.||.|.+|.++-|+..+|...++.+++.|++.+.
T Consensus 311 dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~ 390 (400)
T KOG0328|consen 311 DFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQID 390 (400)
T ss_pred HhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccc
Q psy13286 318 SIPKVIDP 325 (351)
Q Consensus 318 ~~~~~~~~ 325 (351)
++|..+.+
T Consensus 391 emp~nvad 398 (400)
T KOG0328|consen 391 EMPMNVAD 398 (400)
T ss_pred cccchhhh
Confidence 99987654
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-55 Score=403.75 Aligned_cols=316 Identities=35% Similarity=0.601 Sum_probs=294.1
Q ss_pred CcccccCCc-----chhhhcccCc--CCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC-CceEEEEECCcchHHHHHHHh
Q psy13286 1 MVQARQEPT-----QFLYLNKLTP--AKITSKATLIIVPTRELALQTSQICIELAKHL-NVKVMVTTGGTNLRDDIMRIY 72 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~--~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~ 72 (351)
+++|+|||| ++|++..+.. .... ..+||++|||+||.|+++.++++.... ++++..++|+.+...+...+.
T Consensus 70 i~~A~TGsGKT~Af~lP~l~~l~~~~~~~~-~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~ 148 (513)
T COG0513 70 LGQAQTGTGKTAAFLLPLLQKILKSVERKY-VSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK 148 (513)
T ss_pred EEECCCCChHHHHHHHHHHHHHhcccccCC-CceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh
Confidence 468999995 9999999764 3222 229999999999999999999999998 799999999999998888888
Q ss_pred CCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcC
Q psy13286 73 QKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLK 152 (351)
Q Consensus 73 ~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 152 (351)
.+++|+|+||.++++++.++.++++.+.++|+||||+|++.+|.+.+..+...++...|.+++|||++..+..+.+.++.
T Consensus 149 ~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~ 228 (513)
T COG0513 149 RGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLN 228 (513)
T ss_pred cCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEeecc-cc--ccCCceEEEEEcCccc-HHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCC
Q psy13286 153 DPYEINLME-EL--TLKGVTQYYAFVQERQ-KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 228 (351)
Q Consensus 153 ~~~~~~~~~-~~--~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 228 (351)
+|..+.+.. .. ....+.+++..+.... |...|..+++.....++||||+++..++.++..|...|+.+..+||+++
T Consensus 229 ~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~ 308 (513)
T COG0513 229 DPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLP 308 (513)
T ss_pred CCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCC
Confidence 999887763 33 6788999999999876 9999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccc-hHHHHHH
Q psy13286 229 QAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYE-DRYALHR 307 (351)
Q Consensus 229 ~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~-~~~~~~~ 307 (351)
+.+|.+.++.|++|+.+|||||+++++|+|+|++++|||||+|.+++.|+||+||+||.|..|.+++|+.+. |...+..
T Consensus 309 q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ 388 (513)
T COG0513 309 QEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKR 388 (513)
T ss_pred HHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976 8999999
Q ss_pred HHHHhccccC
Q psy13286 308 IEKELGTEIK 317 (351)
Q Consensus 308 l~~~l~~~~~ 317 (351)
+++.++....
T Consensus 389 ie~~~~~~~~ 398 (513)
T COG0513 389 IEKRLERKLP 398 (513)
T ss_pred HHHHHhcccc
Confidence 9999877644
No 6
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.1e-54 Score=396.73 Aligned_cols=318 Identities=31% Similarity=0.551 Sum_probs=293.7
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC-CceEEEEECCcchHHHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL-NVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
+++|||||| .+|++..+..... +.++||++||++|+.|+.+.++.+.... ++++..++|+.+...+...+..+
T Consensus 45 i~~a~TGsGKT~a~~lpil~~l~~~~~-~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~ 123 (460)
T PRK11776 45 IAQAKTGSGKTAAFGLGLLQKLDVKRF-RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHG 123 (460)
T ss_pred EEECCCCCcHHHHHHHHHHHHhhhccC-CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCC
Confidence 478999996 6888888755443 3689999999999999999999998765 78999999999988888888889
Q ss_pred CcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 75 VHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
++|+|+||+++.+++.++...+.+++++|+||+|++++.+|...+..++..++...|++++|||+++.+..+...++.++
T Consensus 124 ~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~ 203 (460)
T PRK11776 124 AHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDP 203 (460)
T ss_pred CCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCC
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHH
Q psy13286 155 YEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNR 234 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 234 (351)
..+.+........+.+.+..+....|...+..++....+.++||||++++.++.+++.|...++.+..+||++++.+|..
T Consensus 204 ~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~ 283 (460)
T PRK11776 204 VEVKVESTHDLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQ 283 (460)
T ss_pred EEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Confidence 88887766666668888888888889999999998888889999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhcc
Q psy13286 235 VFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGT 314 (351)
Q Consensus 235 ~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~ 314 (351)
+++.|++|+.++||||+++++|+|+|++++||+|+.|.+..+|+||+||+||.|..|.+++|+...|...+..+++.++.
T Consensus 284 ~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 284 VLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred HHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCC
Q psy13286 315 EIKSI 319 (351)
Q Consensus 315 ~~~~~ 319 (351)
.+...
T Consensus 364 ~~~~~ 368 (460)
T PRK11776 364 KLNWE 368 (460)
T ss_pred CCcee
Confidence 76643
No 7
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.6e-53 Score=389.39 Aligned_cols=325 Identities=28% Similarity=0.416 Sum_probs=287.6
Q ss_pred CcccccCCc-----chhhhcccCcCC------CCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAK------ITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM 69 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 69 (351)
+++|||||| ++|++..+.... ..++++|||+||++|+.|+.+.++.+....++++..++|+.+...+..
T Consensus 49 i~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~ 128 (423)
T PRK04837 49 AGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK 128 (423)
T ss_pred EEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH
Confidence 478999996 678877764321 234799999999999999999999999999999999999988877777
Q ss_pred HHhCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCC--CCcEEEEEeeCcchHHHHH
Q psy13286 70 RIYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPH--ERQILLYSATFPLTVKNFM 147 (351)
Q Consensus 70 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~~SaT~~~~~~~~~ 147 (351)
.+..+++|+|+||+++.+++.+..+.+.+++++|+||||++++.+|...+..+...++. ..+.+++|||++.....+.
T Consensus 129 ~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~ 208 (423)
T PRK04837 129 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELA 208 (423)
T ss_pred HhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHH
Confidence 77778999999999999999988888999999999999999999999999999888874 4567899999999999888
Q ss_pred HHhcCCCeEEeeccc-cccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccC
Q psy13286 148 EKHLKDPYEINLMEE-LTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAR 226 (351)
Q Consensus 148 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 226 (351)
...+.++..+.+... .....+.+.+.......|...+..++......++||||+++..++.+++.|...++.+..+||+
T Consensus 209 ~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~ 288 (423)
T PRK04837 209 FEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGD 288 (423)
T ss_pred HHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCC
Confidence 888888877766433 2334566666666677888889899888778899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHH
Q psy13286 227 MAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALH 306 (351)
Q Consensus 227 ~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~ 306 (351)
+++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|..|.+++|+.+.|...+.
T Consensus 289 ~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~ 368 (423)
T PRK04837 289 VAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLP 368 (423)
T ss_pred CChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCccccc
Q psy13286 307 RIEKELGTEIKSIPKVIDP 325 (351)
Q Consensus 307 ~l~~~l~~~~~~~~~~~~~ 325 (351)
.+++.++..+...+...++
T Consensus 369 ~i~~~~~~~~~~~~~~~~~ 387 (423)
T PRK04837 369 AIETYIGHSIPVSKYDSDA 387 (423)
T ss_pred HHHHHhCCCCCCccCChhh
Confidence 9999999887665544433
No 8
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.5e-53 Score=395.93 Aligned_cols=331 Identities=27% Similarity=0.478 Sum_probs=294.5
Q ss_pred CcccccCCc-----chhhhcccCcC----CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPA----KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRI 71 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 71 (351)
+++|||||| +||++.++... ...++.+|||+||++|+.|+.+.++++....++++..++|+.+...+...+
T Consensus 171 I~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l 250 (545)
T PTZ00110 171 IGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYAL 250 (545)
T ss_pred EEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHH
Confidence 478999996 67887766432 223578999999999999999999999998899999999999888888888
Q ss_pred hCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc
Q psy13286 72 YQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL 151 (351)
Q Consensus 72 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 151 (351)
..+++|+|+||++|.+++.++...+.++++||+||||++++.+|...+..++..++...|++++|||++.....+...++
T Consensus 251 ~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~ 330 (545)
T PTZ00110 251 RRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLC 330 (545)
T ss_pred HcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHh
Confidence 88999999999999999998888899999999999999999999999999999999999999999999999888888777
Q ss_pred C-CCeEEeeccc--cccCCceEEEEEcCcccHHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccC
Q psy13286 152 K-DPYEINLMEE--LTLKGVTQYYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHAR 226 (351)
Q Consensus 152 ~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 226 (351)
. ++..+.+... .....+.+.+..+....|...+..++... .+.++||||++++.|+.+++.|+..++.+..+||+
T Consensus 331 ~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~ 410 (545)
T PTZ00110 331 KEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGD 410 (545)
T ss_pred ccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECC
Confidence 5 4555554322 23445677777777778888888888765 46799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHH
Q psy13286 227 MAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALH 306 (351)
Q Consensus 227 ~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~ 306 (351)
+++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|..|.+++|++..|...+.
T Consensus 411 ~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~ 490 (545)
T PTZ00110 411 KKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLAR 490 (545)
T ss_pred CcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCccccccccccC
Q psy13286 307 RIEKELGTEIKSIPKVIDPALYVAR 331 (351)
Q Consensus 307 ~l~~~l~~~~~~~~~~~~~~~~~~~ 331 (351)
.+.+.+....+++|..+.+......
T Consensus 491 ~l~~~l~~~~q~vp~~l~~~~~~~~ 515 (545)
T PTZ00110 491 DLVKVLREAKQPVPPELEKLSNERS 515 (545)
T ss_pred HHHHHHHHccCCCCHHHHHHHHHhc
Confidence 9999999999999999887755443
No 9
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.2e-52 Score=385.93 Aligned_cols=317 Identities=34% Similarity=0.561 Sum_probs=287.5
Q ss_pred CcccccCCc-----chhhhcccCcCC-----CCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAK-----ITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMR 70 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 70 (351)
+++|||||| ++|++..+.... ....++|||+||++|+.|+.+.++++....++++..++|+.+...++..
T Consensus 42 lv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 121 (456)
T PRK10590 42 MASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK 121 (456)
T ss_pred EEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH
Confidence 578999996 788888775432 1235899999999999999999999999999999999999998888777
Q ss_pred HhCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHh
Q psy13286 71 IYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKH 150 (351)
Q Consensus 71 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~ 150 (351)
+...++|+|+||++|.+++......++++++||+||||++++.+|...+..++..++...|.+++|||++..+..+...+
T Consensus 122 l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~ 201 (456)
T PRK10590 122 LRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKL 201 (456)
T ss_pred HcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHH
Confidence 77889999999999999988888889999999999999999999999999999999999999999999999999999888
Q ss_pred cCCCeEEeeccc-cccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCH
Q psy13286 151 LKDPYEINLMEE-LTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQ 229 (351)
Q Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 229 (351)
+.++..+.+... .....+.+++..+....+...+..++......++||||+++..++.+++.|...++.+..+||++++
T Consensus 202 ~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~ 281 (456)
T PRK10590 202 LHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ 281 (456)
T ss_pred cCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCH
Confidence 888877766533 3445677778888888888888888888777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHH
Q psy13286 230 AHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIE 309 (351)
Q Consensus 230 ~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~ 309 (351)
.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.+..+|+||+||+||.|..|.+++|+..+|...++.++
T Consensus 282 ~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie 361 (456)
T PRK10590 282 GARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIE 361 (456)
T ss_pred HHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccC
Q psy13286 310 KELGTEIK 317 (351)
Q Consensus 310 ~~l~~~~~ 317 (351)
+.++.++.
T Consensus 362 ~~l~~~~~ 369 (456)
T PRK10590 362 KLLKKEIP 369 (456)
T ss_pred HHhcCCCc
Confidence 99988874
No 10
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.9e-52 Score=392.09 Aligned_cols=320 Identities=28% Similarity=0.494 Sum_probs=290.6
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC-CceEEEEECCcchHHHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL-NVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
+++|||||| .+|++..+..... ++++|||+||++|+.|+++.+.++.... ++++..++|+.+...+...+..+
T Consensus 47 l~~ApTGsGKT~af~lpll~~l~~~~~-~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~ 125 (629)
T PRK11634 47 LGMAQTGSGKTAAFSLPLLHNLDPELK-APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 (629)
T ss_pred EEEcCCCCcHHHHHHHHHHHHhhhccC-CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCC
Confidence 578999996 6788887765443 3799999999999999999999998776 79999999999888887778788
Q ss_pred CcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 75 VHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
++|+|+||+++.+++.+..++++++++||+||||.+++.+|...+..++..++...|++++|||++..+..+...++.++
T Consensus 126 ~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~ 205 (629)
T PRK11634 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEP 205 (629)
T ss_pred CCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCC
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999888
Q ss_pred eEEeeccc-cccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHH
Q psy13286 155 YEINLMEE-LTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRN 233 (351)
Q Consensus 155 ~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 233 (351)
..+.+... .....+.+.+..+....|...+..++......++||||+++..+..+++.|...++.+..+||+|++.+|.
T Consensus 206 ~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~ 285 (629)
T PRK11634 206 QEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALRE 285 (629)
T ss_pred eEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHH
Confidence 87766533 34456677777777778889999999887778999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhc
Q psy13286 234 RVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELG 313 (351)
Q Consensus 234 ~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~ 313 (351)
.+++.|++|+.+|||||+++++|+|+|++++||+||+|.+.++|+||+||+||.|..|.+++|+...|...++.+++.++
T Consensus 286 ~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~ 365 (629)
T PRK11634 286 QTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 (629)
T ss_pred HHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCCc
Q psy13286 314 TEIKSIPK 321 (351)
Q Consensus 314 ~~~~~~~~ 321 (351)
..+.+++.
T Consensus 366 ~~i~~~~~ 373 (629)
T PRK11634 366 LTIPEVEL 373 (629)
T ss_pred CCcceecC
Confidence 88876543
No 11
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.9e-52 Score=386.96 Aligned_cols=327 Identities=30% Similarity=0.469 Sum_probs=288.5
Q ss_pred CcccccCCc-----chhhhcccCc------CCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTP------AKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM 69 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 69 (351)
+++|||||| ++|++.++.. ....++++|||+||++|+.|+.+.++.+.+..++++..+.|+.....+..
T Consensus 162 iv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~ 241 (518)
T PLN00206 162 LVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLY 241 (518)
T ss_pred EEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHH
Confidence 478999996 7888776542 12245899999999999999999999999888899999999988888877
Q ss_pred HHhCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHH
Q psy13286 70 RIYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEK 149 (351)
Q Consensus 70 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 149 (351)
.+..+++|+|+||++|.+++.+....++++++||+||||++++.+|...+..+...++ .+|++++|||++..+..+...
T Consensus 242 ~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~ 320 (518)
T PLN00206 242 RIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASS 320 (518)
T ss_pred HhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHH
Confidence 7778899999999999999998888899999999999999999999998888888874 679999999999999999988
Q ss_pred hcCCCeEEeecccc-ccCCceEEEEEcCcccHHHHHHHHHhhCC--CCcEEEEeCchHHHHHHHHHHHh-cCCeEEEecc
Q psy13286 150 HLKDPYEINLMEEL-TLKGVTQYYAFVQERQKVHCLNTLFSKLQ--INQSIIFCNSTQRVELLAKKITE-LGYCCYYIHA 225 (351)
Q Consensus 150 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~l~~~l~~~~--~~~~lIf~~~~~~~~~l~~~L~~-~~~~~~~~~~ 225 (351)
+..++..+...... ....+.+.+.++....+...+..++.... ..++||||+++..++.+++.|.. .++.+..+||
T Consensus 321 ~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg 400 (518)
T PLN00206 321 LAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHG 400 (518)
T ss_pred hCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeC
Confidence 88888777665433 33446677777777777777777776543 36899999999999999999975 5899999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHH
Q psy13286 226 RMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYAL 305 (351)
Q Consensus 226 ~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~ 305 (351)
++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|..|.+++|++.+|...+
T Consensus 401 ~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~ 480 (518)
T PLN00206 401 EKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLF 480 (518)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCcccccccc
Q psy13286 306 HRIEKELGTEIKSIPKVIDPALY 328 (351)
Q Consensus 306 ~~l~~~l~~~~~~~~~~~~~~~~ 328 (351)
..+.+.+....+.+|..+.+..+
T Consensus 481 ~~l~~~l~~~~~~vp~~l~~~~~ 503 (518)
T PLN00206 481 PELVALLKSSGAAIPRELANSRY 503 (518)
T ss_pred HHHHHHHHHcCCCCCHHHHhChh
Confidence 99999999999999998877653
No 12
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.3e-51 Score=375.82 Aligned_cols=318 Identities=33% Similarity=0.534 Sum_probs=281.9
Q ss_pred CcccccCCc-----chhhhcccCcC---CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHh
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPA---KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIY 72 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 72 (351)
+++||||+| ++|++..+... ..+++++||++||++|+.|+.+.++.+....++++..++|+.....+...+.
T Consensus 42 l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~ 121 (434)
T PRK11192 42 LGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS 121 (434)
T ss_pred EEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc
Confidence 578999996 67888776432 2234799999999999999999999999999999999999998877776777
Q ss_pred CCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcc-hHHHHHHHhc
Q psy13286 73 QKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPL-TVKNFMEKHL 151 (351)
Q Consensus 73 ~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~~~~~~~ 151 (351)
.+++|+|+||++|.+++.++.+.+.++++||+||||++++.+|...+..+....+...|++++|||++. .+..+....+
T Consensus 122 ~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~ 201 (434)
T PRK11192 122 ENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLL 201 (434)
T ss_pred CCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHc
Confidence 789999999999999999888889999999999999999999999999999999889999999999985 4677777777
Q ss_pred CCCeEEeeccc-cccCCceEEEEEcCc-ccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCH
Q psy13286 152 KDPYEINLMEE-LTLKGVTQYYAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQ 229 (351)
Q Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 229 (351)
.++..+..... .....+.+++..... ..+...+..+++.....++||||++++.++.+++.|+..++.+..+||+|++
T Consensus 202 ~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~ 281 (434)
T PRK11192 202 NDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQ 281 (434)
T ss_pred cCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCH
Confidence 78877766533 234456676666653 5788888888887777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHH
Q psy13286 230 AHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIE 309 (351)
Q Consensus 230 ~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~ 309 (351)
.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.+...|+||+||+||.|..|.+++++...|...+..++
T Consensus 282 ~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~ 361 (434)
T PRK11192 282 AKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIE 361 (434)
T ss_pred HHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCC
Q psy13286 310 KELGTEIKS 318 (351)
Q Consensus 310 ~~l~~~~~~ 318 (351)
+.+..++..
T Consensus 362 ~~~~~~~~~ 370 (434)
T PRK11192 362 RYIEEPLKA 370 (434)
T ss_pred HHHhccccc
Confidence 988776643
No 13
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-51 Score=386.09 Aligned_cols=319 Identities=30% Similarity=0.477 Sum_probs=283.3
Q ss_pred CcccccCCc-----chhhhcccCcC------CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPA------KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM 69 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 69 (351)
+++|||||| ++|++.++... ...++++|||+||++|+.|+++.++++....++++..++|+.....+..
T Consensus 50 i~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~ 129 (572)
T PRK04537 50 AGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRE 129 (572)
T ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH
Confidence 478999996 78888776432 1124799999999999999999999999999999999999998877777
Q ss_pred HHhCCCcEEEEccHHHHHHHhcc-CcCCCCccEEEEcccccccCcchHHHHHHHHHhCCC--CCcEEEEEeeCcchHHHH
Q psy13286 70 RIYQKVHLIIATPGRILDLMDKQ-VANMDHCKILVLDEADKLLSQDFKGMLDHVISILPH--ERQILLYSATFPLTVKNF 146 (351)
Q Consensus 70 ~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~~SaT~~~~~~~~ 146 (351)
.+..+++|+|+||++|++++.+. .+.+..+++||+||+|++++.+|...+..++..++. ..|++++|||++..+..+
T Consensus 130 ~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l 209 (572)
T PRK04537 130 LLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLEL 209 (572)
T ss_pred HHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHH
Confidence 77778999999999999988765 456889999999999999999999999999988876 679999999999998888
Q ss_pred HHHhcCCCeEEeec-cccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEecc
Q psy13286 147 MEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHA 225 (351)
Q Consensus 147 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~ 225 (351)
...++.++..+... .......+.+.+.......|...+..++....+.++||||+++..++.+++.|...++.+..+||
T Consensus 210 ~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg 289 (572)
T PRK04537 210 AYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSG 289 (572)
T ss_pred HHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 88888877665543 23344567777777777888888888888888889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHH
Q psy13286 226 RMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYAL 305 (351)
Q Consensus 226 ~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~ 305 (351)
++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||.|.+...|+||+||+||.|..|.+++|+.+.+...+
T Consensus 290 ~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l 369 (572)
T PRK04537 290 DVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSL 369 (572)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCC
Q psy13286 306 HRIEKELGTEIKSI 319 (351)
Q Consensus 306 ~~l~~~l~~~~~~~ 319 (351)
.++++.++.++...
T Consensus 370 ~~i~~~~~~~~~~~ 383 (572)
T PRK04537 370 PDIEAYIEQKIPVE 383 (572)
T ss_pred HHHHHHHcCCCCcc
Confidence 99999988877543
No 14
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-51 Score=378.98 Aligned_cols=317 Identities=30% Similarity=0.496 Sum_probs=281.9
Q ss_pred CcccccCCc-----chhhhcccCcCCC------CCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKI------TSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM 69 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 69 (351)
+++|||||| ++|++..+..... +.+++|||+||++|+.|+.+.++++.+..++++..++|+.....+..
T Consensus 128 i~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~ 207 (475)
T PRK01297 128 IGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLK 207 (475)
T ss_pred EEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHH
Confidence 478999996 7888887754321 24799999999999999999999999989999999999987766665
Q ss_pred HHh-CCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCC--CCcEEEEEeeCcchHHHH
Q psy13286 70 RIY-QKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPH--ERQILLYSATFPLTVKNF 146 (351)
Q Consensus 70 ~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~~SaT~~~~~~~~ 146 (351)
.+. ..++|+|+||++|.+++.++...++++++|||||+|++.+.+|...+..++..++. ..|++++|||++.....+
T Consensus 208 ~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~ 287 (475)
T PRK01297 208 QLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNL 287 (475)
T ss_pred HHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHH
Confidence 554 46899999999999999888888999999999999999999999889988888854 569999999999999999
Q ss_pred HHHhcCCCeEEeeccc-cccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEecc
Q psy13286 147 MEKHLKDPYEINLMEE-LTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHA 225 (351)
Q Consensus 147 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~ 225 (351)
...++.++..+.+... .....+.+.+..+...++...+..++......++||||+++++++.+++.|...++.+..+||
T Consensus 288 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g 367 (475)
T PRK01297 288 AKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSG 367 (475)
T ss_pred HHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 9998888877665433 233456667777777788888999988887789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHH
Q psy13286 226 RMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYAL 305 (351)
Q Consensus 226 ~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~ 305 (351)
+++.++|.++++.|++|+.++||||+++++|+|+|++++||++++|.|..+|+||+||+||.|..|.+++|++++|...+
T Consensus 368 ~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~ 447 (475)
T PRK01297 368 DVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQL 447 (475)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccC
Q psy13286 306 HRIEKELGTEIK 317 (351)
Q Consensus 306 ~~l~~~l~~~~~ 317 (351)
..+++.++..+.
T Consensus 448 ~~~~~~~~~~~~ 459 (475)
T PRK01297 448 PEIEELLGRKIS 459 (475)
T ss_pred HHHHHHhCCCCc
Confidence 999999998873
No 15
>KOG0333|consensus
Probab=100.00 E-value=8.1e-52 Score=358.24 Aligned_cols=321 Identities=29% Similarity=0.480 Sum_probs=288.6
Q ss_pred ccccCCc-----chhhhcccC--c------CCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH
Q psy13286 3 QARQEPT-----QFLYLNKLT--P------AKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM 69 (351)
Q Consensus 3 ~a~tgs~-----~l~~l~~l~--~------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 69 (351)
.|-|||| ++|++..|- | ....++++++++||++|++|+.+.-.+|++.++++++.+.|+....++--
T Consensus 288 vaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~f 367 (673)
T KOG0333|consen 288 VAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGF 367 (673)
T ss_pred EEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhh
Confidence 4556664 666665541 1 23447999999999999999999999999999999999999999888866
Q ss_pred HHhCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCC---------------------
Q psy13286 70 RIYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPH--------------------- 128 (351)
Q Consensus 70 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~--------------------- 128 (351)
.+..+|+|+|+||.+|.+-|.+..+-+++..++|+|||+++.+++|.+.+..++..+|.
T Consensus 368 qls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~ 447 (673)
T KOG0333|consen 368 QLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFS 447 (673)
T ss_pred hhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcc
Confidence 77789999999999999999999888999999999999999999999999999988863
Q ss_pred ----CCcEEEEEeeCcchHHHHHHHhcCCCeEEeeccc-cccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCch
Q psy13286 129 ----ERQILLYSATFPLTVKNFMEKHLKDPYEINLMEE-LTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNST 203 (351)
Q Consensus 129 ----~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~ 203 (351)
-+|.+.||||+++.+..++..|+.+|+.+.+... ...+.+.+.+..+..+.|...|..++......++|||+|++
T Consensus 448 ~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~k 527 (673)
T KOG0333|consen 448 SSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTK 527 (673)
T ss_pred cccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEech
Confidence 1689999999999999999999999999988643 45667889999999999999999999988778999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccc
Q psy13286 204 QRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGR 283 (351)
Q Consensus 204 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR 283 (351)
+.|+.+|+.|.+.|+.++.+||+-++++|+..++.|++|..+|||||++.++|+|+|++++|||||++.|.+.|+||+||
T Consensus 528 k~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGR 607 (673)
T KOG0333|consen 528 KGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGR 607 (673)
T ss_pred hhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeEEEEeccchHHHHHHHHHHhc-cccCCCCccc
Q psy13286 284 SGRYGHLGIAINLITYEDRYALHRIEKELG-TEIKSIPKVI 323 (351)
Q Consensus 284 ~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~ 323 (351)
.||.|+.|.+++|+...|...++.|.+.+. -.-..+|..+
T Consensus 608 TgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~El 648 (673)
T KOG0333|consen 608 TGRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPEL 648 (673)
T ss_pred ccccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhh
Confidence 999999999999999999888888888766 3333444443
No 16
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3e-50 Score=366.99 Aligned_cols=323 Identities=39% Similarity=0.677 Sum_probs=285.2
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+++|||||| ++|++..+..... +.++||++|+++|+.|+.+.++.++...+..+..+.|+......+..+..++
T Consensus 69 ii~apTGsGKT~~~~l~~l~~~~~~~~-~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 147 (401)
T PTZ00424 69 IGQAQSGTGKTATFVIAALQLIDYDLN-ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGV 147 (401)
T ss_pred EEECCCCChHHHHHHHHHHHHhcCCCC-CceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCC
Confidence 478999997 5677776654433 4799999999999999999999999888889999999988877777777889
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCe
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPY 155 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 155 (351)
+|+|+||+++.+.+.+....+++++++|+||+|++.+.+|...+..+...++...|++++|||++.........++.++.
T Consensus 148 ~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 227 (401)
T PTZ00424 148 HMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPK 227 (401)
T ss_pred CEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCE
Confidence 99999999999998888778999999999999999998898888889999989999999999999988888888888777
Q ss_pred EEeecc-ccccCCceEEEEEcCc-ccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHH
Q psy13286 156 EINLME-ELTLKGVTQYYAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRN 233 (351)
Q Consensus 156 ~~~~~~-~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 233 (351)
.+.... .....++.+++..... ..+...+..++......++||||+++++++.+++.|...++.+..+||+++..+|.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~ 307 (401)
T PTZ00424 228 RILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRD 307 (401)
T ss_pred EEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHH
Confidence 665543 3344556666666554 34677777788777778999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhc
Q psy13286 234 RVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELG 313 (351)
Q Consensus 234 ~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~ 313 (351)
.+++.|++|+.+|||||+.+++|+|+|++++||++++|.|...|+||+||+||.|..|.+++++.++|...++.+++.++
T Consensus 308 ~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~ 387 (401)
T PTZ00424 308 LIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYN 387 (401)
T ss_pred HHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccc
Q psy13286 314 TEIKSIPKVID 324 (351)
Q Consensus 314 ~~~~~~~~~~~ 324 (351)
..+++.+....
T Consensus 388 ~~~~~~~~~~~ 398 (401)
T PTZ00424 388 TQIEEMPMEVA 398 (401)
T ss_pred CcccccCcchh
Confidence 99988776543
No 17
>KOG0345|consensus
Probab=100.00 E-value=2.1e-50 Score=345.40 Aligned_cols=308 Identities=29% Similarity=0.496 Sum_probs=279.1
Q ss_pred cccccCCc-----chhhhcccC--cCCCCC--ceEEEEcCCHHHHHHHHHHHHHHHhh-CCceEEEEECCcchHHHHHHH
Q psy13286 2 VQARQEPT-----QFLYLNKLT--PAKITS--KATLIIVPTRELALQTSQICIELAKH-LNVKVMVTTGGTNLRDDIMRI 71 (351)
Q Consensus 2 ~~a~tgs~-----~l~~l~~l~--~~~~~~--~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~ 71 (351)
|+|+|||| ++|++..+. .+.... .-+|||+|||+|+.|+.+++..|... .++++..+.||.+..+++..+
T Consensus 48 veavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~f 127 (567)
T KOG0345|consen 48 VEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTF 127 (567)
T ss_pred EEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHH
Confidence 78999996 899999883 233332 36999999999999999999999988 579999999999988888777
Q ss_pred hC-CCcEEEEccHHHHHHHhccCc--CCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHH
Q psy13286 72 YQ-KVHLIIATPGRILDLMDKQVA--NMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFME 148 (351)
Q Consensus 72 ~~-~~~Ilv~Tp~~l~~~l~~~~~--~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~ 148 (351)
.+ +++|+|+||++|.+++.+... ++..+.++|+||||++++.+|...+..+++.+|+.++.-+||||-+....++..
T Consensus 128 kee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~r 207 (567)
T KOG0345|consen 128 KEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLAR 207 (567)
T ss_pred HHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHH
Confidence 54 788999999999999988554 455999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEeecccc---ccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc--CCeEEEe
Q psy13286 149 KHLKDPYEINLMEEL---TLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL--GYCCYYI 223 (351)
Q Consensus 149 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~~~ 223 (351)
..+++|+.+.+.... .+.....+|..+....|...+.+++......++|||++|...++.....|... ...+..+
T Consensus 208 aGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~i 287 (567)
T KOG0345|consen 208 AGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSI 287 (567)
T ss_pred hhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEe
Confidence 999999999887544 67778899999999999999999999999999999999999999999999876 6788999
Q ss_pred ccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHH
Q psy13286 224 HARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRY 303 (351)
Q Consensus 224 ~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~ 303 (351)
||.|....|..+++.|+...-.+|+||+++.+|+|||+++.||+||+|..+..|.||+||+||.|..|.+++|+.+.+..
T Consensus 288 HGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~a 367 (567)
T KOG0345|consen 288 HGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEA 367 (567)
T ss_pred cchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHH
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999997765
Q ss_pred HHHHHH
Q psy13286 304 ALHRIE 309 (351)
Q Consensus 304 ~~~~l~ 309 (351)
+.+.+.
T Consensus 368 YveFl~ 373 (567)
T KOG0345|consen 368 YVEFLR 373 (567)
T ss_pred HHHHHH
Confidence 554443
No 18
>KOG0335|consensus
Probab=100.00 E-value=8.5e-51 Score=355.08 Aligned_cols=325 Identities=30% Similarity=0.468 Sum_probs=296.2
Q ss_pred CcccccCCc-----chhhhcccCcCCC---------CCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKI---------TSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRD 66 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~---------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~ 66 (351)
+.+|+|||| ++|++..+..... ..++++|++||++|+.|++++++++.....+++...+|+.+...
T Consensus 115 ~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~ 194 (482)
T KOG0335|consen 115 MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGA 194 (482)
T ss_pred EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhh
Confidence 468999995 9999988864322 23899999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccC-cchHHHHHHHHHhCCC----CCcEEEEEeeCcc
Q psy13286 67 DIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLS-QDFKGMLDHVISILPH----ERQILLYSATFPL 141 (351)
Q Consensus 67 ~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~-~~~~~~~~~~~~~~~~----~~~~i~~SaT~~~ 141 (351)
+.....++++|+|+||++|.++++.+.+.+..+.++|+||||+|++ .+|.+.+..+.....- ..|.++||||++.
T Consensus 195 q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~ 274 (482)
T KOG0335|consen 195 QLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPK 274 (482)
T ss_pred hhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCCh
Confidence 9999999999999999999999999999999999999999999999 9999999999888754 6799999999999
Q ss_pred hHHHHHHHhcCCC-eEEeec-cccccCCceEEEEEcCcccHHHHHHHHHhhCC----CC-----cEEEEeCchHHHHHHH
Q psy13286 142 TVKNFMEKHLKDP-YEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQ----IN-----QSIIFCNSTQRVELLA 210 (351)
Q Consensus 142 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~----~~-----~~lIf~~~~~~~~~l~ 210 (351)
.+..++..++.+. ..+.+. ......++.+...++.+..|...|.+++.... .+ +++|||++++.|..++
T Consensus 275 ~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~ 354 (482)
T KOG0335|consen 275 EIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELA 354 (482)
T ss_pred hhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHH
Confidence 9988877777763 333332 34567789999999999999999998887443 33 7999999999999999
Q ss_pred HHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCc
Q psy13286 211 KKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHL 290 (351)
Q Consensus 211 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~ 290 (351)
..|...++++..+||..++.+|.+.++.|++|+..+||||++.++|+|+|+|+|||+||+|....+|+||+||+||.|+.
T Consensus 355 ~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~ 434 (482)
T KOG0335|consen 355 AFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNG 434 (482)
T ss_pred HHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeccchHHHHHHHHHHhccccCCCCccccc
Q psy13286 291 GIAINLITYEDRYALHRIEKELGTEIKSIPKVIDP 325 (351)
Q Consensus 291 ~~~i~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 325 (351)
|.+++|++..+....+.+.+.+...-+++|.++.+
T Consensus 435 G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 435 GRATSFFNEKNQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred ceeEEEeccccchhHHHHHHHHHHhcccCcHHHHh
Confidence 99999999999999999999999999999999987
No 19
>KOG0342|consensus
Probab=100.00 E-value=5.4e-50 Score=344.91 Aligned_cols=309 Identities=31% Similarity=0.458 Sum_probs=280.3
Q ss_pred CcccccCCc-----chhhhcccC---cCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC-CceEEEEECCcchHHHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLT---PAKITSKATLIIVPTRELALQTSQICIELAKHL-NVKVMVTTGGTNLRDDIMRI 71 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~---~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 71 (351)
|+.|+||+| ++|++..+. +....+-.++|++|||+|+-|++.+++++..++ ++.+..+.||.+.......+
T Consensus 123 l~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl 202 (543)
T KOG0342|consen 123 LAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKL 202 (543)
T ss_pred eeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHh
Confidence 568999995 888777664 344456789999999999999999999999999 89999999999988888888
Q ss_pred hCCCcEEEEccHHHHHHHhccCc-CCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHh
Q psy13286 72 YQKVHLIIATPGRILDLMDKQVA-NMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKH 150 (351)
Q Consensus 72 ~~~~~Ilv~Tp~~l~~~l~~~~~-~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~ 150 (351)
.++++|+|+||++|.+++.+..- -+..++++|+||||++++.+|...+..+...++..+|.++||||.++.+.+.....
T Consensus 203 ~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~ 282 (543)
T KOG0342|consen 203 VKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGA 282 (543)
T ss_pred hccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHh
Confidence 88999999999999999987543 35677899999999999999999999999999999999999999999999888776
Q ss_pred cCC-CeEEeeccc---cccCCceEEEEEcCcccHHHHHHHHHhhCCC-CcEEEEeCchHHHHHHHHHHHhcCCeEEEecc
Q psy13286 151 LKD-PYEINLMEE---LTLKGVTQYYAFVQERQKVHCLNTLFSKLQI-NQSIIFCNSTQRVELLAKKITELGYCCYYIHA 225 (351)
Q Consensus 151 ~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~-~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~ 225 (351)
+.. +..+++.+. .+-.++.+.|..+.....+..+..+++++.. .++||||+|...+.-+++.|+...++|..+||
T Consensus 283 L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHg 362 (543)
T KOG0342|consen 283 LKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHG 362 (543)
T ss_pred hcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhc
Confidence 654 777777643 4556788989988888888888888887765 89999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHH
Q psy13286 226 RMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYAL 305 (351)
Q Consensus 226 ~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~ 305 (351)
+.++..|..+...|++.+..||+||++..+|+|+|+++.|++||+|..+.+|+||+||.||.|..|.+++++.+.+...+
T Consensus 363 k~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Fl 442 (543)
T KOG0342|consen 363 KQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFL 442 (543)
T ss_pred CCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy13286 306 HRIE 309 (351)
Q Consensus 306 ~~l~ 309 (351)
+.+.
T Consensus 443 r~LK 446 (543)
T KOG0342|consen 443 RYLK 446 (543)
T ss_pred HHHh
Confidence 9888
No 20
>KOG0338|consensus
Probab=100.00 E-value=2.9e-50 Score=347.48 Aligned_cols=309 Identities=30% Similarity=0.514 Sum_probs=281.5
Q ss_pred ccccCCc-----chhhhcccC--cCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 3 QARQEPT-----QFLYLNKLT--PAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 3 ~a~tgs~-----~l~~l~~l~--~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|.|||| .||+|.+|+ |.....-|+|||+|||+|+-|++.+.++++++..+.+.++.||.+.+.+-..+.+.+
T Consensus 224 ~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~P 303 (691)
T KOG0338|consen 224 CAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRP 303 (691)
T ss_pred eecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCC
Confidence 5678884 899998885 333445799999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccHHHHHHHhccC-cCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 76 HLIIATPGRILDLMDKQV-ANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~-~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
||+|+||++|.+++++.. ++++++..+|+||||+|++.+|...+..++..+++++|.++||||++..+.+++.--+.+|
T Consensus 304 DIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kP 383 (691)
T KOG0338|consen 304 DIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKP 383 (691)
T ss_pred CEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCC
Confidence 999999999999998754 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecccc-ccCCceEEEEEcCc---ccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHH
Q psy13286 155 YEINLMEEL-TLKGVTQYYAFVQE---RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQA 230 (351)
Q Consensus 155 ~~~~~~~~~-~~~~~~~~~~~~~~---~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 230 (351)
+.+.+.... ..+.+.+.|..... ..+...+..++...-..+++||+.+++.|.++.-.|--.|..+.-+||.+++.
T Consensus 384 vrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~ 463 (691)
T KOG0338|consen 384 VRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQE 463 (691)
T ss_pred eEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHH
Confidence 999887543 45566666665543 35667777777776678999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHH
Q psy13286 231 HRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEK 310 (351)
Q Consensus 231 ~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~ 310 (351)
+|.+.++.|+.++++|||||++.++|+||+++..||||.+|.+.+.|+||.||..|.|..|.+++|+.+.|...++.+.+
T Consensus 464 QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik 543 (691)
T KOG0338|consen 464 QRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIK 543 (691)
T ss_pred HHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred H
Q psy13286 311 E 311 (351)
Q Consensus 311 ~ 311 (351)
.
T Consensus 544 ~ 544 (691)
T KOG0338|consen 544 S 544 (691)
T ss_pred h
Confidence 6
No 21
>KOG0343|consensus
Probab=100.00 E-value=1e-48 Score=340.89 Aligned_cols=314 Identities=32% Similarity=0.519 Sum_probs=284.7
Q ss_pred ccccCCc-----chhhhcccCc---CCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCC
Q psy13286 3 QARQEPT-----QFLYLNKLTP---AKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 3 ~a~tgs~-----~l~~l~~l~~---~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
.|+|||| ++|+|.+|.. ....|.-+|||.|||+||.|+++.+.+.++.+.++...+.||.........+ ++
T Consensus 112 AAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~ 190 (758)
T KOG0343|consen 112 AAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQ 190 (758)
T ss_pred ccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hc
Confidence 4788885 8888877743 4555788999999999999999999999999999999999999876665554 57
Q ss_pred CcEEEEccHHHHHHHhccC-cCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCC
Q psy13286 75 VHLIIATPGRILDLMDKQV-ANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKD 153 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~-~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~ 153 (351)
.+|+||||++|+.++.... +..+++.++|+||||++++++|...+..++..+|+.+|.++||||.+..+.+++...+.+
T Consensus 191 mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~d 270 (758)
T KOG0343|consen 191 MNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKD 270 (758)
T ss_pred CCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCC
Confidence 9999999999999887654 467899999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeecc---ccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc--CCeEEEeccCCC
Q psy13286 154 PYEINLME---ELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMA 228 (351)
Q Consensus 154 ~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~ 228 (351)
|..+.+.. ...+.+..+.|..++..+|++.|..++..+...++|||++|.+++.-+++.+++. |++...+||.|+
T Consensus 271 P~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~ 350 (758)
T KOG0343|consen 271 PVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMS 350 (758)
T ss_pred CcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchh
Confidence 99998873 3467789999999999999999999999999999999999999999999999987 788999999999
Q ss_pred HHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccch-HHHHHH
Q psy13286 229 QAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYED-RYALHR 307 (351)
Q Consensus 229 ~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~-~~~~~~ 307 (351)
+..|.++...|...+..||+||++.++|+|+|.+++||++|.|.++++|+||.||.+|.+..|.+++++.+.+ ...+..
T Consensus 351 Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~ 430 (758)
T KOG0343|consen 351 QKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKK 430 (758)
T ss_pred HHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988887 666777
Q ss_pred HHHHhccccCC
Q psy13286 308 IEKELGTEIKS 318 (351)
Q Consensus 308 l~~~l~~~~~~ 318 (351)
+++.. +++.+
T Consensus 431 Lq~k~-I~i~~ 440 (758)
T KOG0343|consen 431 LQKKK-IPIKE 440 (758)
T ss_pred HHHcC-CCHHh
Confidence 77653 44444
No 22
>KOG0340|consensus
Probab=100.00 E-value=7.1e-49 Score=325.03 Aligned_cols=321 Identities=33% Similarity=0.517 Sum_probs=286.6
Q ss_pred ccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcE
Q psy13286 3 QARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHL 77 (351)
Q Consensus 3 ~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~I 77 (351)
+|+|||| .||+|+++..+..+ ..++|++||++|+-|+.+.|..+++..++++..+.|+...-.+-..+...+++
T Consensus 50 ~AkTGsGKT~AFaLPil~rLsedP~g-iFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHv 128 (442)
T KOG0340|consen 50 CAKTGSGKTAAFALPILNRLSEDPYG-IFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHV 128 (442)
T ss_pred ccccCCCcchhhhHHHHHhhccCCCc-ceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCe
Confidence 5899995 89999998777665 89999999999999999999999999999999999999988887788889999
Q ss_pred EEEccHHHHHHHhccC----cCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCC
Q psy13286 78 IIATPGRILDLMDKQV----ANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKD 153 (351)
Q Consensus 78 lv~Tp~~l~~~l~~~~----~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~ 153 (351)
+|+||+++.++++++. ..+.++.++|+||||++++..|...+..+...+|..+|.++||||+++.+..+...-...
T Consensus 129 VvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k 208 (442)
T KOG0340|consen 129 VVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITK 208 (442)
T ss_pred EecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCccc
Confidence 9999999999887762 247899999999999999999999999999999999999999999998887766554444
Q ss_pred C--eEEee-ccccccCCceEEEEEcCcccHHHHHHHHHhhCC---CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCC
Q psy13286 154 P--YEINL-MEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQ---INQSIIFCNSTQRVELLAKKITELGYCCYYIHARM 227 (351)
Q Consensus 154 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 227 (351)
+ ..... ..........+.|..++...|..-+..+++..+ .+.++||+++..+|+.++..|+..++.+..+|+.|
T Consensus 209 ~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m 288 (442)
T KOG0340|consen 209 SIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQM 288 (442)
T ss_pred ccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcc
Confidence 2 22222 233455667788999998888877888776443 56799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHH
Q psy13286 228 AQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHR 307 (351)
Q Consensus 228 ~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~ 307 (351)
++.+|...+..|+++..++||||++.++|+|||.++.|||+|.|..|..|+||.||..|.|..|.+++++...|...+..
T Consensus 289 ~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~a 368 (442)
T KOG0340|consen 289 PQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQA 368 (442)
T ss_pred hHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCcccc
Q psy13286 308 IEKELGTEIKSIPKVID 324 (351)
Q Consensus 308 l~~~l~~~~~~~~~~~~ 324 (351)
+++..|....+-+...+
T Consensus 369 iE~~igkKl~e~~~~~~ 385 (442)
T KOG0340|consen 369 IEEEIGKKLTEYNKVQR 385 (442)
T ss_pred HHHHHhcccccccccch
Confidence 99999999998776553
No 23
>KOG0336|consensus
Probab=100.00 E-value=1.5e-48 Score=328.82 Aligned_cols=334 Identities=28% Similarity=0.434 Sum_probs=299.5
Q ss_pred ccccCCc-----chhhhcccCcC-----CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHh
Q psy13286 3 QARQEPT-----QFLYLNKLTPA-----KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIY 72 (351)
Q Consensus 3 ~a~tgs~-----~l~~l~~l~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 72 (351)
+|.||++ ++|-+-++... ...++.+|+++||++|+.|+...+.++ .+.+.+..+++|+.+...+...+.
T Consensus 263 VAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky-syng~ksvc~ygggnR~eqie~lk 341 (629)
T KOG0336|consen 263 VAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY-SYNGLKSVCVYGGGNRNEQIEDLK 341 (629)
T ss_pred EEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh-hhcCcceEEEecCCCchhHHHHHh
Confidence 3455553 66666555432 334689999999999999999998777 456889999999999999999999
Q ss_pred CCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcC
Q psy13286 73 QKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLK 152 (351)
Q Consensus 73 ~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 152 (351)
.+.+|+|+||.+|.++.-.+..++..+.++|+||||+|++++|.+.+..++-...+.+|.++.|||+|+.+..+..+|+.
T Consensus 342 rgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~K 421 (629)
T KOG0336|consen 342 RGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLK 421 (629)
T ss_pred cCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEeec--cccccCCceEEEEEcCcccHHHHHHHHHhhCC-CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCH
Q psy13286 153 DPYEINLM--EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQ-INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQ 229 (351)
Q Consensus 153 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 229 (351)
+|..+.+. +-.....+.+.+....+.+|...+..+..... ..++||||..+..|..+...|.-.|+.+..+||+-.+
T Consensus 422 ep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q 501 (629)
T KOG0336|consen 422 EPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQ 501 (629)
T ss_pred CceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhh
Confidence 99887664 33455567788877788899999998888765 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHH
Q psy13286 230 AHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIE 309 (351)
Q Consensus 230 ~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~ 309 (351)
.+|+..+++|++|+.+|||+|+..++|+|+|+++||++||+|.+.++|+||.||.||.|..|.+++|+..+|-....++.
T Consensus 502 ~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI 581 (629)
T KOG0336|consen 502 SDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELI 581 (629)
T ss_pred hhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCccccccccccCCccccc
Q psy13286 310 KELGTEIKSIPKVIDPALYVARPEDMDR 337 (351)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (351)
+.|....+++|+.+-.+.......+-.|
T Consensus 582 ~ILe~aeQevPdeL~~mAeryk~~q~kR 609 (629)
T KOG0336|consen 582 QILERAEQEVPDELVRMAERYKLKQSKR 609 (629)
T ss_pred HHHHHhhhhCcHHHHHHHHHHHhhhccc
Confidence 9999999999999988877655544333
No 24
>KOG0339|consensus
Probab=100.00 E-value=2e-46 Score=323.62 Aligned_cols=325 Identities=26% Similarity=0.412 Sum_probs=293.5
Q ss_pred ccccCCc-----chhhhcccCcC----CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhC
Q psy13286 3 QARQEPT-----QFLYLNKLTPA----KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQ 73 (351)
Q Consensus 3 ~a~tgs~-----~l~~l~~l~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 73 (351)
.|+|||| ++|++-++... ...++..||++||++|+.|++.++++|++..+++++.++|+-+.-++...+..
T Consensus 266 IAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~ 345 (731)
T KOG0339|consen 266 IAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKE 345 (731)
T ss_pred eeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhc
Confidence 4789995 77777777432 34569999999999999999999999999999999999999999888888889
Q ss_pred CCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCC
Q psy13286 74 KVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKD 153 (351)
Q Consensus 74 ~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~ 153 (351)
++.|+|+||++|.++++-+..++.++.++|+||+++|.+.+|...++.|.....+.+|.++||||++..+..+...++.+
T Consensus 346 g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~d 425 (731)
T KOG0339|consen 346 GAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSD 425 (731)
T ss_pred CCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeecc-ccccCCceEEEEEcCcc-cHHHHHH-HHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHH
Q psy13286 154 PYEINLME-ELTLKGVTQYYAFVQER-QKVHCLN-TLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQA 230 (351)
Q Consensus 154 ~~~~~~~~-~~~~~~~~~~~~~~~~~-~k~~~l~-~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 230 (351)
|+.+...+ ......+.+.+..+... .|+.-|. .+......+++|||+.-+..++.++..|+-.++++..+||++.+.
T Consensus 426 pVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa 505 (731)
T KOG0339|consen 426 PVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQA 505 (731)
T ss_pred CeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhH
Confidence 98765542 23444577777777665 4555444 444455678999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHH
Q psy13286 231 HRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEK 310 (351)
Q Consensus 231 ~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~ 310 (351)
+|.+++..|+.+...|||+|++..+|+|||.+..|++||.-.+.+.|.||+||.||.|.+|.+++++.+.|....-.|.+
T Consensus 506 ~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVn 585 (731)
T KOG0339|consen 506 ERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVN 585 (731)
T ss_pred HHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccCCCCccccccc
Q psy13286 311 ELGTEIKSIPKVIDPAL 327 (351)
Q Consensus 311 ~l~~~~~~~~~~~~~~~ 327 (351)
.|.-.-+.+|..+-+..
T Consensus 586 nLe~agQnVP~~l~dla 602 (731)
T KOG0339|consen 586 NLEGAGQNVPDELMDLA 602 (731)
T ss_pred HHhhccccCChHHHHHH
Confidence 99999999999887653
No 25
>KOG0346|consensus
Probab=100.00 E-value=3.6e-47 Score=322.97 Aligned_cols=316 Identities=27% Similarity=0.413 Sum_probs=280.5
Q ss_pred CcccccCCc-----chhhhcccCcC-----CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCC--ceEEEEECCcchHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPA-----KITSKATLIIVPTRELALQTSQICIELAKHLN--VKVMVTTGGTNLRDDI 68 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~ 68 (351)
+.+|+|||| ++|++..|... ...++.++|++||++|++|++..+.++..+.+ ++++.+.++.+.....
T Consensus 60 varArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~ 139 (569)
T KOG0346|consen 60 VARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS 139 (569)
T ss_pred eeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH
Confidence 357899996 89999888543 33468999999999999999999999988775 6666666555555555
Q ss_pred HHHhCCCcEEEEccHHHHHHHhccC-cCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHH
Q psy13286 69 MRIYQKVHLIIATPGRILDLMDKQV-ANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFM 147 (351)
Q Consensus 69 ~~~~~~~~Ilv~Tp~~l~~~l~~~~-~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 147 (351)
..+...++|+|+||.+++.++..+. ..+..+.++|+||||.++..+|.+.+..+.+.+|+..|.++||||+++++..+.
T Consensus 140 ~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LK 219 (569)
T KOG0346|consen 140 VALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALK 219 (569)
T ss_pred HHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHH
Confidence 6677789999999999999998877 568899999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEeecccc--ccCCceEEEEEcCcccHHHHHHHHHhh-CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEec
Q psy13286 148 EKHLKDPYEINLMEEL--TLKGVTQYYAFVQERQKVHCLNTLFSK-LQINQSIIFCNSTQRVELLAKKITELGYCCYYIH 224 (351)
Q Consensus 148 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~ 224 (351)
+.++++|+.+.+.+.. .+..+.+++..|.+.+|.-.+..+++- .-.+++|||+|+...+.++.-.|...|+..++++
T Consensus 220 kL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLN 299 (569)
T KOG0346|consen 220 KLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILN 299 (569)
T ss_pred HHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhc
Confidence 9999999998887554 447899999999999999988888873 3468999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhcCCccEEEEeC-----------------------------------cCCCCCCCCCCCEEEEec
Q psy13286 225 ARMAQAHRNRVFHDFRSGLCRNLVCSD-----------------------------------LFTRGIDVQAVNVVINFD 269 (351)
Q Consensus 225 ~~~~~~~r~~~~~~f~~g~~~ilv~T~-----------------------------------~~~~G~di~~~~~Vi~~~ 269 (351)
|.+|...|-.+++.|+.|-++++|||+ ...+|+|+.++.+|+|||
T Consensus 300 seLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD 379 (569)
T KOG0346|consen 300 SELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFD 379 (569)
T ss_pred ccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecC
Confidence 999999999999999999999999999 145799999999999999
Q ss_pred CCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhcccc
Q psy13286 270 FPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEI 316 (351)
Q Consensus 270 ~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~ 316 (351)
+|.+..+|+||+||.+|.+++|.+++|+.+.+......++..+..++
T Consensus 380 ~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~~ 426 (569)
T KOG0346|consen 380 FPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDEN 426 (569)
T ss_pred CCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhHH
Confidence 99999999999999999999999999999999887777777766654
No 26
>KOG0332|consensus
Probab=100.00 E-value=4.9e-47 Score=316.01 Aligned_cols=315 Identities=34% Similarity=0.563 Sum_probs=276.2
Q ss_pred ccccCCc---chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEE
Q psy13286 3 QARQEPT---QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLII 79 (351)
Q Consensus 3 ~a~tgs~---~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv 79 (351)
|+.||++ .|++|.++.+.... |.++.|+||++||.|+.+.+.+++++.+++......+.....- ..-..+|+|
T Consensus 137 qsGtGKTaaFvL~MLsrvd~~~~~-PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG---~~i~eqIvi 212 (477)
T KOG0332|consen 137 QSGTGKTAAFVLTMLSRVDPDVVV-PQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG---NKLTEQIVI 212 (477)
T ss_pred cCCCchhHHHHHHHHHhcCccccC-CCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC---Ccchhheee
Confidence 5666664 88888888888887 9999999999999999999999999998888777766531110 011257999
Q ss_pred EccHHHHHHHhc-cCcCCCCccEEEEcccccccC-cchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCeEE
Q psy13286 80 ATPGRILDLMDK-QVANMDHCKILVLDEADKLLS-QDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEI 157 (351)
Q Consensus 80 ~Tp~~l~~~l~~-~~~~~~~~~lvViDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~ 157 (351)
+||..+.+++.. ..+++..+..+|+|||+.+++ .+|+..-..+...++.+.|++++|||+......|......++..+
T Consensus 213 GTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i 292 (477)
T KOG0332|consen 213 GTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVI 292 (477)
T ss_pred CCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCcee
Confidence 999999998887 777899999999999999887 568888888899999999999999999999999999999998887
Q ss_pred eec-cccccCCceEEEEEcCcc-cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHH
Q psy13286 158 NLM-EELTLKGVTQYYAFVQER-QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRV 235 (351)
Q Consensus 158 ~~~-~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 235 (351)
.+. ++....++.++|..|..+ +|+..+..+.....-+++||||.++..|.+++..+...|+.+..+||+|...+|..+
T Consensus 293 ~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~i 372 (477)
T KOG0332|consen 293 ILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAI 372 (477)
T ss_pred eeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHH
Confidence 775 567888999999988764 799999999988888999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCC------ChhhHhhhccccccCCCceeEEEEeccchH-HHHHHH
Q psy13286 236 FHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPK------MAETYLHRIGRSGRYGHLGIAINLITYEDR-YALHRI 308 (351)
Q Consensus 236 ~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~------s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~-~~~~~l 308 (351)
++.|+.|..+|||+|+++.+|+|++.++.|||||+|. +.+.|+||+||+||+|..|.++.+++.++. ..+..|
T Consensus 373 i~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~i 452 (477)
T KOG0332|consen 373 IDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKI 452 (477)
T ss_pred HHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHH
Confidence 9999999999999999999999999999999999994 578999999999999999999999988754 446688
Q ss_pred HHHhccccCCCCc
Q psy13286 309 EKELGTEIKSIPK 321 (351)
Q Consensus 309 ~~~l~~~~~~~~~ 321 (351)
++.++..+.....
T Consensus 453 q~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 453 QKHFNMKIKRLDP 465 (477)
T ss_pred HHHHhhcceecCC
Confidence 8888776665433
No 27
>KOG0327|consensus
Probab=100.00 E-value=2.8e-46 Score=313.62 Aligned_cols=320 Identities=37% Similarity=0.661 Sum_probs=295.9
Q ss_pred ccccCC---cchhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHh-CCCcEE
Q psy13286 3 QARQEP---TQFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIY-QKVHLI 78 (351)
Q Consensus 3 ~a~tgs---~~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~Il 78 (351)
||.||+ +.++++..+...... ..+++++|+++|+.|.....+.++...+.++..+.|+.+...+...+. ..++|+
T Consensus 71 qsgTgKt~af~i~iLq~iD~~~ke-~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hiv 149 (397)
T KOG0327|consen 71 QSGTGKTAAFLISILQQIDMSVKE-TQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIV 149 (397)
T ss_pred eccccchhhhHHHHHhhcCcchHH-HHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceee
Confidence 344444 488888888666665 789999999999999999999999999999999999998775555544 468999
Q ss_pred EEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCeEEe
Q psy13286 79 IATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEIN 158 (351)
Q Consensus 79 v~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~ 158 (351)
++||+++.+++....+....+.++|+||+|.++..+|.+.+..+...++...|++++|||.+.+.....+.+..+|..+.
T Consensus 150 vGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~ 229 (397)
T KOG0327|consen 150 VGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRIL 229 (397)
T ss_pred cCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEE
Confidence 99999999999988888888999999999999999999999999999999999999999999999999999999999998
Q ss_pred ec-cccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHH
Q psy13286 159 LM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFH 237 (351)
Q Consensus 159 ~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 237 (351)
+. .+....++.+++..+..+.|+..+.++.+ .-.+.+|||++++.+..+...|.+.++.+..+|+.|.+.+|..+++
T Consensus 230 vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ 307 (397)
T KOG0327|consen 230 VKKDELTLEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMR 307 (397)
T ss_pred ecchhhhhhheeeeeeeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHH
Confidence 86 44678889999999999999999999999 5568999999999999999999999999999999999999999999
Q ss_pred HhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhccccC
Q psy13286 238 DFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIK 317 (351)
Q Consensus 238 ~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~ 317 (351)
.|++|..++||+|+.+++|+|+..++.|++|++|...+.|+||+||+||+|.+|.++.++.+.|...+++++++|+..++
T Consensus 308 ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~ 387 (397)
T KOG0327|consen 308 EFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIE 387 (397)
T ss_pred HhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccc
Q psy13286 318 SIPKVIDP 325 (351)
Q Consensus 318 ~~~~~~~~ 325 (351)
++|..+.+
T Consensus 388 e~p~~~~~ 395 (397)
T KOG0327|consen 388 ELPSNFAD 395 (397)
T ss_pred ecccchhh
Confidence 99988754
No 28
>KOG0341|consensus
Probab=100.00 E-value=3e-47 Score=318.94 Aligned_cols=322 Identities=30% Similarity=0.493 Sum_probs=286.2
Q ss_pred cccCCc-----chhhh-------cccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC------CceEEEEECCcchH
Q psy13286 4 ARQEPT-----QFLYL-------NKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL------NVKVMVTTGGTNLR 65 (351)
Q Consensus 4 a~tgs~-----~l~~l-------~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~------~~~v~~~~~~~~~~ 65 (351)
|-|||| .||++ .++..+.+.|+.-||+||+|+|+.|.++.+.++...+ .++...+.|+.+..
T Consensus 214 AfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~ 293 (610)
T KOG0341|consen 214 AFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVR 293 (610)
T ss_pred EeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHH
Confidence 457774 56654 1223456678999999999999999999999998765 37889999999999
Q ss_pred HHHHHHhCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHH
Q psy13286 66 DDIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKN 145 (351)
Q Consensus 66 ~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 145 (351)
+++..+..+.+|+|+||++|.+++..+.+.+.-.+++.+||||++.+.+|...+..+...+...+|.++||||+|..+..
T Consensus 294 eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~ 373 (610)
T KOG0341|consen 294 EQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQN 373 (610)
T ss_pred HHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEeecccc-ccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEec
Q psy13286 146 FMEKHLKDPYEINLMEEL-TLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIH 224 (351)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~ 224 (351)
|+.+-+.+|+.+++.... ..-++.+.+.++..+.|+--+...++... .++||||..+..+..+.++|--.|..+..+|
T Consensus 374 FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlKGVEavaIH 452 (610)
T KOG0341|consen 374 FAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLLKGVEAVAIH 452 (610)
T ss_pred HHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccCC-CceEEEeccccChHHHHHHHHHccceeEEee
Confidence 999999999999886543 33345555666677778777777777665 5899999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccc-hHH
Q psy13286 225 ARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYE-DRY 303 (351)
Q Consensus 225 ~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~-~~~ 303 (351)
|+-.+++|...++.|+.|+.+|||+|++.+.|+|+|++.||||||+|...+.|.||+||.||.|..|.+.+|++.. +..
T Consensus 453 GGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~es 532 (610)
T KOG0341|consen 453 GGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEES 532 (610)
T ss_pred cCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876 566
Q ss_pred HHHHHHHHhccccCCCCcccccc
Q psy13286 304 ALHRIEKELGTEIKSIPKVIDPA 326 (351)
Q Consensus 304 ~~~~l~~~l~~~~~~~~~~~~~~ 326 (351)
.+..+...|-..-+++|..+...
T Consensus 533 vLlDLK~LL~EakQ~vP~~L~~L 555 (610)
T KOG0341|consen 533 VLLDLKHLLQEAKQEVPPVLAEL 555 (610)
T ss_pred HHHHHHHHHHHhhccCCHHHHHh
Confidence 78888888888888888887654
No 29
>KOG4284|consensus
Probab=100.00 E-value=1.9e-45 Score=325.68 Aligned_cols=300 Identities=33% Similarity=0.576 Sum_probs=271.8
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC-CceEEEEECCcchHHHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL-NVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
+||||.|+| .+.++..+.+.... ...+||+|||+++.|+.+.+++++..+ |.++..+.||+........+. +
T Consensus 66 iVQaKSGTGKTlVfsv~av~sl~~~~~~-~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~ 143 (980)
T KOG4284|consen 66 IVQAKSGTGKTLVFSVLAVESLDSRSSH-IQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-Q 143 (980)
T ss_pred EEEecCCCCceEEEEeeeehhcCcccCc-ceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-h
Confidence 578888775 34455555555554 899999999999999999999998754 799999999999887776654 5
Q ss_pred CcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccC-cchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCC
Q psy13286 75 VHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLS-QDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKD 153 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~ 153 (351)
++|+|+||+++..+++.+.++.++++++|+||||.+.+ ..|...+..++..+|+..|++++|||.+..+.+.+..++++
T Consensus 144 ~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrd 223 (980)
T KOG4284|consen 144 TRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRD 223 (980)
T ss_pred ceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcc
Confidence 88999999999999999999999999999999999998 67999999999999999999999999999999999999999
Q ss_pred CeEEeecc-ccccCCceEEEEEcCcc--------cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEec
Q psy13286 154 PYEINLME-ELTLKGVTQYYAFVQER--------QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIH 224 (351)
Q Consensus 154 ~~~~~~~~-~~~~~~~~~~~~~~~~~--------~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~ 224 (351)
|..+.... .....++.+++...... .|+..|.++++..+-.+.||||+....|+-++..|...|+.+.++.
T Consensus 224 p~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~IS 303 (980)
T KOG4284|consen 224 PALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFIS 303 (980)
T ss_pred cceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEec
Confidence 99988864 45677888888776553 4788899999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchH
Q psy13286 225 ARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDR 302 (351)
Q Consensus 225 ~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~ 302 (351)
|.|++.+|..+++.++.-..+|||+|+.-.+|+|-++++.|||.|+|.+.++|.||+|||||+|.+|.+++|+..+..
T Consensus 304 gaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 304 GAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887654
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.5e-44 Score=344.72 Aligned_cols=310 Identities=17% Similarity=0.224 Sum_probs=239.8
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+++|||||| +||++..+... .+.++|||+||++|+.|+...++++. ..++++..+.|+.+.. +...+..++
T Consensus 55 vv~apTGSGKTla~~LPiL~~l~~~--~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~ 130 (742)
T TIGR03817 55 VVATGTASGKSLAYQLPVLSALADD--PRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHA 130 (742)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhhC--CCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCC
Confidence 478999996 88999888653 34799999999999999999999997 4478888888887643 334556679
Q ss_pred cEEEEccHHHHHHHh-c---cCcCCCCccEEEEcccccccCcchHHHHHHH-------HHhCCCCCcEEEEEeeCcchHH
Q psy13286 76 HLIIATPGRILDLMD-K---QVANMDHCKILVLDEADKLLSQDFKGMLDHV-------ISILPHERQILLYSATFPLTVK 144 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~-~---~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~-------~~~~~~~~~~i~~SaT~~~~~~ 144 (351)
+|+|+||+++...+. . +...++++++||+||+|.+.+ .|+..+..+ ....+..+|++++|||+++...
T Consensus 131 ~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~ 209 (742)
T TIGR03817 131 RYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA 209 (742)
T ss_pred CEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH
Confidence 999999999965332 1 112378999999999999865 366554433 3334567899999999988754
Q ss_pred HHHHHhcCCCeEEeeccccccCCceEEEEEcCc-----------------ccHHHHHHHHHhhCCCCcEEEEeCchHHHH
Q psy13286 145 NFMEKHLKDPYEINLMEELTLKGVTQYYAFVQE-----------------RQKVHCLNTLFSKLQINQSIIFCNSTQRVE 207 (351)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~ 207 (351)
+...++..+..+ +..............+.+. ..+...+..++.. +.++||||+|++.++
T Consensus 210 -~~~~l~g~~~~~-i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae 285 (742)
T TIGR03817 210 -AASRLIGAPVVA-VTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAE 285 (742)
T ss_pred -HHHHHcCCCeEE-ECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHH
Confidence 566666666443 2222222222222222211 1344555556553 578999999999999
Q ss_pred HHHHHHHhc--------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhh
Q psy13286 208 LLAKKITEL--------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLH 279 (351)
Q Consensus 208 ~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q 279 (351)
.++..|+.. +..+..+||++++++|.++++.|++|+.++||||+++++|+|+|++++||+++.|.+..+|+|
T Consensus 286 ~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~q 365 (742)
T TIGR03817 286 LVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQ 365 (742)
T ss_pred HHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHH
Confidence 999998764 567889999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCCceeEEEEec--cchHHHHHHHHHHhccccCCC
Q psy13286 280 RIGRSGRYGHLGIAINLIT--YEDRYALHRIEKELGTEIKSI 319 (351)
Q Consensus 280 ~~GR~gR~~~~~~~i~~~~--~~~~~~~~~l~~~l~~~~~~~ 319 (351)
|+||+||.|..|.++++.. ..|...+...++.++..++..
T Consensus 366 RiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~ 407 (742)
T TIGR03817 366 QAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEAT 407 (742)
T ss_pred hccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccc
Confidence 9999999999999999986 456777777888888776654
No 31
>KOG0350|consensus
Probab=100.00 E-value=4.6e-45 Score=314.69 Aligned_cols=313 Identities=27% Similarity=0.434 Sum_probs=269.0
Q ss_pred cccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCC-C
Q psy13286 2 VQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQK-V 75 (351)
Q Consensus 2 ~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~ 75 (351)
|-|||||| .+|+++.+-...-...|++||+|+++|+.|+++.|.+++...|+.|..+.|..+...+..++.+. +
T Consensus 188 V~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~ 267 (620)
T KOG0350|consen 188 VNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPP 267 (620)
T ss_pred EecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCC
Confidence 67999996 89999998777555699999999999999999999999999999999999999988887777653 3
Q ss_pred ----cEEEEccHHHHHHHhc-cCcCCCCccEEEEcccccccCcchHHHHHHHHHhCC-----------------------
Q psy13286 76 ----HLIIATPGRILDLMDK-QVANMDHCKILVLDEADKLLSQDFKGMLDHVISILP----------------------- 127 (351)
Q Consensus 76 ----~Ilv~Tp~~l~~~l~~-~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~----------------------- 127 (351)
||+|+||++|.+++.+ ..+++++++++||||||++++..|..++..+...+.
T Consensus 268 ~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~ 347 (620)
T KOG0350|consen 268 ECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVL 347 (620)
T ss_pred ccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhh
Confidence 8999999999999985 667899999999999999999888877765544332
Q ss_pred -----------CCCcEEEEEeeCcchHHHHHHHhcCCCeEEeecc----c-cccCCceEEEEEcCcccHHHHHHHHHhhC
Q psy13286 128 -----------HERQILLYSATFPLTVKNFMEKHLKDPYEINLME----E-LTLKGVTQYYAFVQERQKVHCLNTLFSKL 191 (351)
Q Consensus 128 -----------~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 191 (351)
.+.+.+++|||+..+...+....+..|....+.. . ..+..+.+....+....|...+..++...
T Consensus 348 ~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~ 427 (620)
T KOG0350|consen 348 SELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN 427 (620)
T ss_pred HHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh
Confidence 1234778899998888888877777776555542 1 23344666667777778888999999999
Q ss_pred CCCcEEEEeCchHHHHHHHHHHH----hcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEE
Q psy13286 192 QINQSIIFCNSTQRVELLAKKIT----ELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVIN 267 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~ 267 (351)
+..++|+|+++.+.+.+++..|+ +....+..+.|+++.+.|.++++.|+.|.+++|||++++.+|+|+.++++||+
T Consensus 428 k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN 507 (620)
T KOG0350|consen 428 KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN 507 (620)
T ss_pred hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee
Confidence 99999999999999999999987 23567778999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhcc
Q psy13286 268 FDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGT 314 (351)
Q Consensus 268 ~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~ 314 (351)
||+|.+..+|+||+||.+|.|+.|.++++.+..+.+.+.++-+..+.
T Consensus 508 Yd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 508 YDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred cCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 99999999999999999999999999999999998888888776555
No 32
>KOG0348|consensus
Probab=100.00 E-value=7.1e-45 Score=315.85 Aligned_cols=311 Identities=28% Similarity=0.451 Sum_probs=260.0
Q ss_pred CcccccCCc-----chhhhcccCc-----CCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCc-eEEEEECCcchHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTP-----AKITSKATLIIVPTRELALQTSQICIELAKHLNV-KVMVTTGGTNLRDDIM 69 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~-----~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~ 69 (351)
||.|+|||| ++|++..|.. ....|+.+||++||||||.|+++.++++.+.... --..+.||.+...+..
T Consensus 178 lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKA 257 (708)
T KOG0348|consen 178 LVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKA 257 (708)
T ss_pred EEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHH
Confidence 588999996 8888877743 3445799999999999999999999999887542 3345668888777888
Q ss_pred HHhCCCcEEEEccHHHHHHHhc-cCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCC-------------CCcEEEE
Q psy13286 70 RIYQKVHLIIATPGRILDLMDK-QVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPH-------------ERQILLY 135 (351)
Q Consensus 70 ~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~ 135 (351)
.+.++++|+|+||++|.+.+.+ ..+.++++.++|+||+|++++.+|...+..++..... ..|.+++
T Consensus 258 RLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLl 337 (708)
T KOG0348|consen 258 RLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLL 337 (708)
T ss_pred HHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhh
Confidence 8899999999999999999887 4567899999999999999999999999988877621 3578999
Q ss_pred EeeCcchHHHHHHHhcCCCeEEeeccc--------------------------cccCCceEEEEEcCcccHHHHHHHHHh
Q psy13286 136 SATFPLTVKNFMEKHLKDPYEINLMEE--------------------------LTLKGVTQYYAFVQERQKVHCLNTLFS 189 (351)
Q Consensus 136 SaT~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~k~~~l~~~l~ 189 (351)
|||+++.+..+...-+.+|+.+..... ..+....+.|..++..-.+-+|..++.
T Consensus 338 SATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~ 417 (708)
T KOG0348|consen 338 SATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLL 417 (708)
T ss_pred hhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHH
Confidence 999999999999999999998873211 112234466677777655555555443
Q ss_pred ----hCCCCcEEEEeCchHHHHHHHHHHHhc----------------------CCeEEEeccCCCHHHHHHHHHHhhcCC
Q psy13286 190 ----KLQINQSIIFCNSTQRVELLAKKITEL----------------------GYCCYYIHARMAQAHRNRVFHDFRSGL 243 (351)
Q Consensus 190 ----~~~~~~~lIf~~~~~~~~~l~~~L~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~ 243 (351)
.....++|||+++.+.++-=+..|... +..+..+||+|.+++|..+++.|...+
T Consensus 418 ~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~ 497 (708)
T KOG0348|consen 418 NKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSR 497 (708)
T ss_pred HHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhcccc
Confidence 445679999999999998777777542 345789999999999999999999999
Q ss_pred ccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHH
Q psy13286 244 CRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKE 311 (351)
Q Consensus 244 ~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~ 311 (351)
-.||+||++.++|+|+|++.+||.||+|.+.++|+||+||..|.|.+|.+++|+.+.|..++..++..
T Consensus 498 ~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 498 RAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred ceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999998877776664
No 33
>KOG0347|consensus
Probab=100.00 E-value=2.6e-45 Score=319.51 Aligned_cols=313 Identities=27% Similarity=0.428 Sum_probs=249.4
Q ss_pred cccCCc-----chhhhcccCcCCC----------CCce--EEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHH
Q psy13286 4 ARQEPT-----QFLYLNKLTPAKI----------TSKA--TLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRD 66 (351)
Q Consensus 4 a~tgs~-----~l~~l~~l~~~~~----------~~~~--~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~ 66 (351)
|-|||| .+|+++.+..... ..++ .||++|||+||.|+.+.+...+...++++..++||.....
T Consensus 226 AeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqK 305 (731)
T KOG0347|consen 226 AETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQK 305 (731)
T ss_pred cccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHH
Confidence 567874 8899986654221 1244 9999999999999999999999999999999999999888
Q ss_pred HHHHHhCCCcEEEEccHHHHHHHhccCc---CCCCccEEEEcccccccCcchHHHHHHHHHhCC-----CCCcEEEEEee
Q psy13286 67 DIMRIYQKVHLIIATPGRILDLMDKQVA---NMDHCKILVLDEADKLLSQDFKGMLDHVISILP-----HERQILLYSAT 138 (351)
Q Consensus 67 ~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~---~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~-----~~~~~i~~SaT 138 (351)
+-+.+...++|+|+||++|+.++..+.. .++++.++|+||+|+|+..+...++..++..+. ...|.++||||
T Consensus 306 QqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSAT 385 (731)
T KOG0347|consen 306 QQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSAT 385 (731)
T ss_pred HHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEE
Confidence 8777888999999999999999986544 578999999999999999998888888877764 45699999999
Q ss_pred CcchHH---------------------HHHHH--hcCCCeEEeeccc-cccCCceEEEEEcCcccHHHHHHHHHhhCCCC
Q psy13286 139 FPLTVK---------------------NFMEK--HLKDPYEINLMEE-LTLKGVTQYYAFVQERQKVHCLNTLFSKLQIN 194 (351)
Q Consensus 139 ~~~~~~---------------------~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 194 (351)
++-... .+++. +..+|..++.... .....+..-...|+..+|--.+..++.. -++
T Consensus 386 lt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~r-yPG 464 (731)
T KOG0347|consen 386 LTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTR-YPG 464 (731)
T ss_pred eehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEee-cCC
Confidence 853221 11211 1223444444321 1111111111111111111111112222 248
Q ss_pred cEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCCh
Q psy13286 195 QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMA 274 (351)
Q Consensus 195 ~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~ 274 (351)
++|||||++..+.+++-.|+..++....+|+.|.+.+|..-++.|++....|||||++..+|+|||++.|||||-.|++.
T Consensus 465 rTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrts 544 (731)
T KOG0347|consen 465 RTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTS 544 (731)
T ss_pred ceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhccccC
Q psy13286 275 ETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIK 317 (351)
Q Consensus 275 ~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~ 317 (351)
+-|+||.||.+|.+..|..++++.+.+...+.++++.|....+
T Consensus 545 eiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 545 EIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred ceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999887655
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.4e-43 Score=322.92 Aligned_cols=295 Identities=19% Similarity=0.236 Sum_probs=223.1
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHH-
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRI- 71 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~- 71 (351)
+++|||||| ++|++. .++.+||++|+++|+.|+.+.++.+ ++++..+.++....+.. ..+
T Consensus 30 lv~apTGsGKTl~y~lp~l~-------~~~~~lVi~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~ 98 (470)
T TIGR00614 30 FVVMPTGGGKSLCYQLPALC-------SDGITLVISPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQKNVLTDLK 98 (470)
T ss_pred EEEcCCCCcHhHHHHHHHHH-------cCCcEEEEecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHh
Confidence 478999997 455543 1368999999999999999887654 77888887776644321 222
Q ss_pred hCCCcEEEEccHHHHHHHh-ccCc-CCCCccEEEEcccccccCcc--hHHHHHHH---HHhCCCCCcEEEEEeeCcchHH
Q psy13286 72 YQKVHLIIATPGRILDLMD-KQVA-NMDHCKILVLDEADKLLSQD--FKGMLDHV---ISILPHERQILLYSATFPLTVK 144 (351)
Q Consensus 72 ~~~~~Ilv~Tp~~l~~~l~-~~~~-~~~~~~lvViDE~h~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SaT~~~~~~ 144 (351)
....+|+++||+++..... ...+ ...+++++||||||++.+++ |...+..+ ...+ +..+++++|||+++...
T Consensus 99 ~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~ 177 (470)
T TIGR00614 99 DGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKF-PNVPIMALTATASPSVR 177 (470)
T ss_pred cCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHc-CCCceEEEecCCCHHHH
Confidence 2358999999999743210 1111 46789999999999998764 66655443 3334 46779999999998876
Q ss_pred HHHHHhcC--CCeEEeeccccccCCceEEEEEcCcccHHHHHHHHHh-hCCCCcEEEEeCchHHHHHHHHHHHhcCCeEE
Q psy13286 145 NFMEKHLK--DPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS-KLQINQSIIFCNSTQRVELLAKKITELGYCCY 221 (351)
Q Consensus 145 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~ 221 (351)
..+...+. ++... ......+++....... .......+..++. ..++.++||||+++++++.+++.|+..++.+.
T Consensus 178 ~di~~~l~l~~~~~~--~~s~~r~nl~~~v~~~-~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~ 254 (470)
T TIGR00614 178 EDILRQLNLKNPQIF--CTSFDRPNLYYEVRRK-TPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAG 254 (470)
T ss_pred HHHHHHcCCCCCcEE--eCCCCCCCcEEEEEeC-CccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCee
Confidence 65555432 33322 2223333332222211 1234555555555 45556679999999999999999999999999
Q ss_pred EeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccch
Q psy13286 222 YIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYED 301 (351)
Q Consensus 222 ~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~ 301 (351)
.+|++|++++|..+++.|++|+.+|||||+++++|+|+|++++||++++|.|.+.|+||+||+||.|..|.++++++..|
T Consensus 255 ~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d 334 (470)
T TIGR00614 255 AYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPAD 334 (470)
T ss_pred EeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHH
Q psy13286 302 RYALHRIEK 310 (351)
Q Consensus 302 ~~~~~~l~~ 310 (351)
...++.+..
T Consensus 335 ~~~~~~~~~ 343 (470)
T TIGR00614 335 INRLRRLLM 343 (470)
T ss_pred HHHHHHHHh
Confidence 766655543
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.7e-43 Score=335.90 Aligned_cols=297 Identities=19% Similarity=0.257 Sum_probs=227.8
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHh---
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIY--- 72 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--- 72 (351)
+++||||+| +||+|.. ++.+|||+|+++|+.++...+.. .+++...+.++....++...+.
T Consensus 479 LVimPTGSGKSLcYQLPAL~~-------~GiTLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~ 547 (1195)
T PLN03137 479 FVLMPTGGGKSLTYQLPALIC-------PGITLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELS 547 (1195)
T ss_pred EEEcCCCccHHHHHHHHHHHc-------CCcEEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHH
Confidence 578999997 7777643 36899999999999877766543 3788888998877554433221
Q ss_pred ---CCCcEEEEccHHHHH--HHhccC---cCCCCccEEEEcccccccCcc--hHHHHHHH--HHhCCCCCcEEEEEeeCc
Q psy13286 73 ---QKVHLIIATPGRILD--LMDKQV---ANMDHCKILVLDEADKLLSQD--FKGMLDHV--ISILPHERQILLYSATFP 140 (351)
Q Consensus 73 ---~~~~Ilv~Tp~~l~~--~l~~~~---~~~~~~~lvViDE~h~~~~~~--~~~~~~~~--~~~~~~~~~~i~~SaT~~ 140 (351)
..++|+++||+++.. .+.+.. .....+.+|||||||++++++ |++.+..+ +.......+++++|||++
T Consensus 548 s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT 627 (1195)
T PLN03137 548 SEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATAT 627 (1195)
T ss_pred hcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCC
Confidence 368999999999852 121111 123458899999999999875 77766653 333335677999999999
Q ss_pred chHHHHHHHhcCCCeEEeeccccccCCceEEEEEcCccc-HHHHHHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhcCC
Q psy13286 141 LTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQ-KVHCLNTLFSKL-QINQSIIFCNSTQRVELLAKKITELGY 218 (351)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~-~~~~~lIf~~~~~~~~~l~~~L~~~~~ 218 (351)
......+...+..............+++ .+....... ....+..++... .+.++||||.++..++.++..|+..|+
T Consensus 628 ~~V~eDI~~~L~l~~~~vfr~Sf~RpNL--~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gi 705 (1195)
T PLN03137 628 ASVKEDVVQALGLVNCVVFRQSFNRPNL--WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGH 705 (1195)
T ss_pred HHHHHHHHHHcCCCCcEEeecccCccce--EEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCC
Confidence 9888766665543322233334444443 233333222 234555555543 356899999999999999999999999
Q ss_pred eEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEec
Q psy13286 219 CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLIT 298 (351)
Q Consensus 219 ~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~ 298 (351)
.+..+||+|++.+|..+++.|.+|+++|||||+++++|+|+|++++||||++|.|.+.|+||+||+||.|..+.|++|++
T Consensus 706 ka~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys 785 (1195)
T PLN03137 706 KAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYS 785 (1195)
T ss_pred CeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHH
Q psy13286 299 YEDRYALHRIEK 310 (351)
Q Consensus 299 ~~~~~~~~~l~~ 310 (351)
..|...++.+.+
T Consensus 786 ~~D~~~~~~lI~ 797 (1195)
T PLN03137 786 YSDYIRVKHMIS 797 (1195)
T ss_pred HHHHHHHHHHHh
Confidence 888766665543
No 36
>KOG0334|consensus
Probab=100.00 E-value=6.5e-43 Score=326.41 Aligned_cols=325 Identities=29% Similarity=0.526 Sum_probs=292.6
Q ss_pred CcccccCCc-----chhhhcccCc----CCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTP----AKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRI 71 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~----~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 71 (351)
|.+|+|||| +||++.++.. ....||.++|++||++|+.|+.+++++|.+..++++...+|++...+++..+
T Consensus 406 IgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiael 485 (997)
T KOG0334|consen 406 IGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAEL 485 (997)
T ss_pred EEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHH
Confidence 457999995 6888877643 3444799999999999999999999999999999999999999999999999
Q ss_pred hCCCcEEEEccHHHHHHHhccCc---CCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHH
Q psy13286 72 YQKVHLIIATPGRILDLMDKQVA---NMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFME 148 (351)
Q Consensus 72 ~~~~~Ilv~Tp~~l~~~l~~~~~---~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~ 148 (351)
.+++.|+|+||+++.+++..+.- .+.+..++|+||+|++++.+|.+....++..++...|.+++|||++..+..+..
T Consensus 486 kRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~ 565 (997)
T KOG0334|consen 486 KRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALAR 565 (997)
T ss_pred hcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHH
Confidence 99999999999999998865444 345555999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEeec-cccccCCceEEEEEcC-cccHHHHHHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEecc
Q psy13286 149 KHLKDPYEINLM-EELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKL-QINQSIIFCNSTQRVELLAKKITELGYCCYYIHA 225 (351)
Q Consensus 149 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~-~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~ 225 (351)
..+..|+.+.+. .......+.+.+..+. +..|...|..++... ..+++||||.+.+.|..+.+.|.+.|+.+..+||
T Consensus 566 ~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHG 645 (997)
T KOG0334|consen 566 KVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHG 645 (997)
T ss_pred HhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcC
Confidence 999999887765 4445667888888888 778988888888744 3789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHH
Q psy13286 226 RMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYAL 305 (351)
Q Consensus 226 ~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~ 305 (351)
+.++.+|..++++|++|...+||+|+.+.+|+|++.+..||||++|...+.|+||.||+||.|.+|.+++|+.+.+....
T Consensus 646 gv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a 725 (997)
T KOG0334|consen 646 GVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYA 725 (997)
T ss_pred CCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCccccc
Q psy13286 306 HRIEKELGTEIKSIPKVIDP 325 (351)
Q Consensus 306 ~~l~~~l~~~~~~~~~~~~~ 325 (351)
..|.+++...-+.+|..+..
T Consensus 726 ~dl~~al~~~~~~~P~~l~~ 745 (997)
T KOG0334|consen 726 GDLCKALELSKQPVPKLLQA 745 (997)
T ss_pred HHHHHHHHhccCCCchHHHH
Confidence 99999997777777755543
No 37
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.1e-41 Score=322.14 Aligned_cols=292 Identities=20% Similarity=0.237 Sum_probs=224.0
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH---HHh
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM---RIY 72 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~ 72 (351)
+|.||||+| ++|++.. ++.+||++|+++|+.|+.+.++.+ ++....+.++........ ...
T Consensus 44 lv~apTGsGKTl~y~lpal~~-------~g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~ 112 (607)
T PRK11057 44 LVVMPTGGGKSLCYQIPALVL-------DGLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCR 112 (607)
T ss_pred EEEcCCCchHHHHHHHHHHHc-------CCCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHh
Confidence 578999997 5555532 358999999999999999888654 677777777765443322 222
Q ss_pred -CCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcc--hHHHHHH---HHHhCCCCCcEEEEEeeCcchHHHH
Q psy13286 73 -QKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQD--FKGMLDH---VISILPHERQILLYSATFPLTVKNF 146 (351)
Q Consensus 73 -~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~--~~~~~~~---~~~~~~~~~~~i~~SaT~~~~~~~~ 146 (351)
...+++++||+++........+...+++++||||||++.+++ |.+.+.. +...+ +..+++++|||++......
T Consensus 113 ~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~d 191 (607)
T PRK11057 113 TGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQD 191 (607)
T ss_pred CCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHH
Confidence 357899999999863211122334678999999999998754 6655443 33444 4678999999999887655
Q ss_pred HHHhcC--CCeEEeeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEec
Q psy13286 147 MEKHLK--DPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIH 224 (351)
Q Consensus 147 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~ 224 (351)
+...+. ++.. .......+++ .+.......+...+...+....+.++||||+++++++.+++.|+..++.+..+|
T Consensus 192 i~~~l~l~~~~~--~~~~~~r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~H 267 (607)
T PRK11057 192 IVRLLGLNDPLI--QISSFDRPNI--RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYH 267 (607)
T ss_pred HHHHhCCCCeEE--EECCCCCCcc--eeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEec
Confidence 544432 3322 2222333333 233333344556666777777788999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHH
Q psy13286 225 ARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYA 304 (351)
Q Consensus 225 ~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~ 304 (351)
++|+.++|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.|.++|+||+||+||.|.+|.+++|++..|...
T Consensus 268 a~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~ 347 (607)
T PRK11057 268 AGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAW 347 (607)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888655
Q ss_pred HHHH
Q psy13286 305 LHRI 308 (351)
Q Consensus 305 ~~~l 308 (351)
++.+
T Consensus 348 ~~~~ 351 (607)
T PRK11057 348 LRRC 351 (607)
T ss_pred HHHH
Confidence 5444
No 38
>KOG0337|consensus
Probab=100.00 E-value=3.9e-43 Score=296.94 Aligned_cols=313 Identities=28% Similarity=0.425 Sum_probs=290.4
Q ss_pred CcchhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHH
Q psy13286 8 PTQFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILD 87 (351)
Q Consensus 8 s~~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~ 87 (351)
++++|++.++......+.+++++.||++|+.|..+..+.+++..+++...+.|+.+..+++..+..++||+++||.++..
T Consensus 74 af~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h 153 (529)
T KOG0337|consen 74 AFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLH 153 (529)
T ss_pred hHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeee
Confidence 35999999999888888999999999999999999999999999999999999999999999999899999999999988
Q ss_pred HHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCeEEeecc-ccccC
Q psy13286 88 LMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLME-ELTLK 166 (351)
Q Consensus 88 ~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 166 (351)
+...-.+.++.+.+||+||++++..++|.+.+..+++.++...|.++||||+|..+.++.+.-+.+|..+.+.. .....
T Consensus 154 ~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise 233 (529)
T KOG0337|consen 154 LGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISE 233 (529)
T ss_pred eehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcch
Confidence 76666678999999999999999999999999999999999999999999999999999999999999988653 33455
Q ss_pred CceEEEEEcCcccHHHHHHHHHhhCC-CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCcc
Q psy13286 167 GVTQYYAFVQERQKVHCLNTLFSKLQ-INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCR 245 (351)
Q Consensus 167 ~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 245 (351)
.....+..+...+|...|..++.... +.+++|||.+..+++.+...|+..|+.+..+++.+.+..|..-..+|+.++..
T Consensus 234 ~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~ 313 (529)
T KOG0337|consen 234 LLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTS 313 (529)
T ss_pred hhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccc
Confidence 56677788888899999998887654 56899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhccccCCCC
Q psy13286 246 NLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIKSIP 320 (351)
Q Consensus 246 ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~~~~ 320 (351)
+||.|+...+|+|+|-.+.||+||.|.+..-|.||.||+.|.|..|.+|+++.+.|..++-.+..+++.++...+
T Consensus 314 ~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~ 388 (529)
T KOG0337|consen 314 ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAI 388 (529)
T ss_pred eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876543
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.1e-41 Score=317.97 Aligned_cols=295 Identities=20% Similarity=0.245 Sum_probs=229.8
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH---HH-
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM---RI- 71 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~- 71 (351)
++.||||+| ++|++. .++.++|++|+++|+.|+.+.++++ ++.+..++++....+... .+
T Consensus 32 lv~~PTG~GKTl~y~lpal~-------~~g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~ 100 (591)
T TIGR01389 32 LVVMPTGGGKSLCYQVPALL-------LKGLTVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALV 100 (591)
T ss_pred EEEcCCCccHhHHHHHHHHH-------cCCcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHh
Confidence 478999997 455542 1367999999999999999988765 678888888776544322 22
Q ss_pred hCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCc--chHHHHHHH---HHhCCCCCcEEEEEeeCcchHHHH
Q psy13286 72 YQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQ--DFKGMLDHV---ISILPHERQILLYSATFPLTVKNF 146 (351)
Q Consensus 72 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~--~~~~~~~~~---~~~~~~~~~~i~~SaT~~~~~~~~ 146 (351)
....+|+++||+++........+...+++++||||||++..+ +|.+.+..+ ...++.. +++++|||+++.....
T Consensus 101 ~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~-~vi~lTAT~~~~~~~~ 179 (591)
T TIGR01389 101 NGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQV-PRIALTATADAETRQD 179 (591)
T ss_pred CCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCC-CEEEEEeCCCHHHHHH
Confidence 246899999999995433333344678999999999999874 466655544 3444444 4999999999888777
Q ss_pred HHHhcCCCeEEeeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccC
Q psy13286 147 MEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAR 226 (351)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 226 (351)
+...+.-+...........+++ .+.......+...+..++....+.++||||++++.++.+++.|...++.+..+|++
T Consensus 180 i~~~l~~~~~~~~~~~~~r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~ 257 (591)
T TIGR01389 180 IRELLRLADANEFITSFDRPNL--RFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAG 257 (591)
T ss_pred HHHHcCCCCCCeEecCCCCCCc--EEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECC
Confidence 6666542222122223333333 23333344566777778877777899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHH
Q psy13286 227 MAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALH 306 (351)
Q Consensus 227 ~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~ 306 (351)
|+.++|..+++.|.+|+.+|||||+++++|+|+|++++||++++|.|.+.|+|++||+||.|..+.++++++..|...++
T Consensus 258 l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~ 337 (591)
T TIGR01389 258 LSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLK 337 (591)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887765544
Q ss_pred HHH
Q psy13286 307 RIE 309 (351)
Q Consensus 307 ~l~ 309 (351)
.+.
T Consensus 338 ~~i 340 (591)
T TIGR01389 338 RRI 340 (591)
T ss_pred HHH
Confidence 433
No 40
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.4e-39 Score=323.31 Aligned_cols=314 Identities=19% Similarity=0.230 Sum_probs=225.4
Q ss_pred cccccCCc-----chhhhcccCcCC---------CCCceEEEEcCCHHHHHHHHHHHHHHHh------------hCCceE
Q psy13286 2 VQARQEPT-----QFLYLNKLTPAK---------ITSKATLIIVPTRELALQTSQICIELAK------------HLNVKV 55 (351)
Q Consensus 2 ~~a~tgs~-----~l~~l~~l~~~~---------~~~~~~lil~P~~~L~~q~~~~~~~~~~------------~~~~~v 55 (351)
|+|||||| .||++..+.... ..+.++|||+|+++|+.|+.+.++.... ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 68999996 788888775431 2357999999999999999998875321 236899
Q ss_pred EEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhccC-cCCCCccEEEEcccccccCcchH----HHHHHHHHhCCCCC
Q psy13286 56 MVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQV-ANMDHCKILVLDEADKLLSQDFK----GMLDHVISILPHER 130 (351)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~-~~~~~~~lvViDE~h~~~~~~~~----~~~~~~~~~~~~~~ 130 (351)
...+|+++..+....+.+.++|+|+||++|..++.++. ..++++++|||||+|.+.+..++ ..+..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999998877766667789999999999988876542 35899999999999999876443 45566666677789
Q ss_pred cEEEEEeeCcchHHHHHHHhcC--CCeEEeeccccccCCceEEEEEcCcc--------------------cHH-HHHHHH
Q psy13286 131 QILLYSATFPLTVKNFMEKHLK--DPYEINLMEELTLKGVTQYYAFVQER--------------------QKV-HCLNTL 187 (351)
Q Consensus 131 ~~i~~SaT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~k~-~~l~~~ 187 (351)
|++++|||+++. .+..+ ++. .++.+..........+... ...... ... .....+
T Consensus 161 QrIgLSATI~n~-eevA~-~L~g~~pv~Iv~~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAA-FLGGDRPVTVVNPPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHH-HhcCCCCEEEECCCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999873 44443 433 2444322211111122211 111110 000 111123
Q ss_pred Hhh-CCCCcEEEEeCchHHHHHHHHHHHhcC---------------------------------CeEEEeccCCCHHHHH
Q psy13286 188 FSK-LQINQSIIFCNSTQRVELLAKKITELG---------------------------------YCCYYIHARMAQAHRN 233 (351)
Q Consensus 188 l~~-~~~~~~lIf~~~~~~~~~l~~~L~~~~---------------------------------~~~~~~~~~~~~~~r~ 233 (351)
+.. ..+.++||||||+..|+.++..|++.. ..+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 332 235789999999999999999997641 1257899999999999
Q ss_pred HHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccC-CCceeEEEEeccch-H-HHHHHHHH
Q psy13286 234 RVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRY-GHLGIAINLITYED-R-YALHRIEK 310 (351)
Q Consensus 234 ~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~-~~~~~~i~~~~~~~-~-~~~~~l~~ 310 (351)
.+++.|++|++++||||+.++.|+|++++++||+++.|.|..+|+||+||+||. |..+.++++....+ . ....-++.
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~~~ve~ 397 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVEC 397 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997 33345554433322 1 11223555
Q ss_pred HhccccCC
Q psy13286 311 ELGTEIKS 318 (351)
Q Consensus 311 ~l~~~~~~ 318 (351)
.+.-.++.
T Consensus 398 ~l~g~iE~ 405 (1490)
T PRK09751 398 MFAGRLEN 405 (1490)
T ss_pred HhcCCCCc
Confidence 56555554
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.8e-39 Score=315.93 Aligned_cols=286 Identities=19% Similarity=0.237 Sum_probs=207.9
Q ss_pred CcccccCCc-----chhhhcccCcCC-----CCCceEEEEcCCHHHHHHHHHHHHHH-------H----hhC-CceEEEE
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAK-----ITSKATLIIVPTRELALQTSQICIEL-------A----KHL-NVKVMVT 58 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~-------~----~~~-~~~v~~~ 58 (351)
+|+|||||| .+|++..+.... ..+.++||++|+++|++|+++.+.+. + ... ++++...
T Consensus 51 li~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~ 130 (876)
T PRK13767 51 LISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIR 130 (876)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEE
Confidence 579999997 778877765321 23478999999999999999866532 2 122 6788999
Q ss_pred ECCcchHHHHHHHhCCCcEEEEccHHHHHHHhccCc--CCCCccEEEEcccccccCcchHHHHH----HHHHhCCCCCcE
Q psy13286 59 TGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQVA--NMDHCKILVLDEADKLLSQDFKGMLD----HVISILPHERQI 132 (351)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~--~~~~~~lvViDE~h~~~~~~~~~~~~----~~~~~~~~~~~~ 132 (351)
+|+.+.......+.+.++|+|+||+++..++.+... .+.++++||+||+|.+.+..++..+. .+....+...|.
T Consensus 131 ~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~ 210 (876)
T PRK13767 131 TGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVR 210 (876)
T ss_pred cCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeE
Confidence 999987777667777899999999999887765433 46899999999999998766554443 344444467899
Q ss_pred EEEEeeCcch--HHHHHHHhcC--CCeEEeeccccccCCceEEEE-------EcCcc----cHHHHHHHHHhhCCCCcEE
Q psy13286 133 LLYSATFPLT--VKNFMEKHLK--DPYEINLMEELTLKGVTQYYA-------FVQER----QKVHCLNTLFSKLQINQSI 197 (351)
Q Consensus 133 i~~SaT~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~k~~~l~~~l~~~~~~~~l 197 (351)
+++|||+++. +..++..... .+....+.............. ..... .....+..+++ .++++|
T Consensus 211 IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~L 288 (876)
T PRK13767 211 IGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTL 288 (876)
T ss_pred EEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHh--cCCCEE
Confidence 9999998762 2222221110 011111111111111111110 01111 11223333333 356899
Q ss_pred EEeCchHHHHHHHHHHHhc------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCC
Q psy13286 198 IFCNSTQRVELLAKKITEL------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFP 271 (351)
Q Consensus 198 If~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p 271 (351)
|||++++.|+.++..|+.. +..+..+||++++++|..+++.|++|+.++||||+++++|+|+|++++||+++.|
T Consensus 289 VF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P 368 (876)
T PRK13767 289 IFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSP 368 (876)
T ss_pred EEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCC
Confidence 9999999999999999873 4679999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHhhhccccccCC
Q psy13286 272 KMAETYLHRIGRSGRYG 288 (351)
Q Consensus 272 ~s~~~~~q~~GR~gR~~ 288 (351)
.+..+|+||+||+||.+
T Consensus 369 ~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 369 KSVSRLLQRIGRAGHRL 385 (876)
T ss_pred CCHHHHHHhcccCCCCC
Confidence 99999999999999874
No 42
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.7e-39 Score=294.32 Aligned_cols=298 Identities=20% Similarity=0.236 Sum_probs=235.0
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHHh
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRIY 72 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~ 72 (351)
++.+|||.| .+|.+-. .+-+|||.|..+|...+.+.+++. |+....+.+..+..+.. ..+.
T Consensus 36 lvvmPTGgGKSlCyQiPAll~-------~G~TLVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~ 104 (590)
T COG0514 36 LVVMPTGGGKSLCYQIPALLL-------EGLTLVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLK 104 (590)
T ss_pred EEEccCCCCcchHhhhHHHhc-------CCCEEEECchHHHHHHHHHHHHHc----CceeehhhcccCHHHHHHHHHHHh
Confidence 467899996 7776554 369999999999999999988666 67888888775543332 2232
Q ss_pred C-CCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcc--hHHHHHHHHHh---CCCCCcEEEEEeeCcchHHHH
Q psy13286 73 Q-KVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQD--FKGMLDHVISI---LPHERQILLYSATFPLTVKNF 146 (351)
Q Consensus 73 ~-~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~--~~~~~~~~~~~---~~~~~~~i~~SaT~~~~~~~~ 146 (351)
. ..+++.-+||++..-...+.+.-.++.+++|||||+++.++ |++.+..+... ++ ++.++.+|||.++.+...
T Consensus 105 ~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~D 183 (590)
T COG0514 105 SGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDD 183 (590)
T ss_pred cCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHH
Confidence 2 48999999999954322222235678999999999999985 88887765443 44 677999999999999888
Q ss_pred HHHhcCCCeEEeeccccccCCceEEEEEcC-cccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEecc
Q psy13286 147 MEKHLKDPYEINLMEELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHA 225 (351)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~ 225 (351)
+...+.-..........+.+++........ ...+...+.. ......+..||||.|+..++.++++|+..|+.+..+|+
T Consensus 184 I~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHa 262 (590)
T COG0514 184 IREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHA 262 (590)
T ss_pred HHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecC
Confidence 877776544444555666666544443332 1122222222 12455677999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHH
Q psy13286 226 RMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYAL 305 (351)
Q Consensus 226 ~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~ 305 (351)
+|+.++|..+.+.|..++..|+|||.++++|+|.|+++.||||++|.|.++|.|..|||||+|..+.+++++++.|....
T Consensus 263 Gl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~ 342 (590)
T COG0514 263 GLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQ 342 (590)
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred HHHHHH
Q psy13286 306 HRIEKE 311 (351)
Q Consensus 306 ~~l~~~ 311 (351)
+.+.+.
T Consensus 343 ~~~i~~ 348 (590)
T COG0514 343 RYLIEQ 348 (590)
T ss_pred HHHHHh
Confidence 555554
No 43
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=7.6e-39 Score=309.94 Aligned_cols=294 Identities=19% Similarity=0.200 Sum_probs=221.0
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHHh
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRIY 72 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~ 72 (351)
||+++|||| ++|++..+ ..+++++|++||++|+.|+++.+++++...++++..++|..+..+. +..+.
T Consensus 476 Ll~adTGsGKT~val~a~l~al----~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~ 551 (926)
T TIGR00580 476 LVCGDVGFGKTEVAMRAAFKAV----LDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELA 551 (926)
T ss_pred EEECCCCccHHHHHHHHHHHHH----HhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHH
Confidence 589999997 33444333 2347999999999999999999999988888999999887764332 23333
Q ss_pred C-CCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc
Q psy13286 73 Q-KVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL 151 (351)
Q Consensus 73 ~-~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 151 (351)
. .++|+|+||..+ .....+.+++++|+||+|++ +......+..++..++++++|||+.+..........
T Consensus 552 ~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~ 621 (926)
T TIGR00580 552 SGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGI 621 (926)
T ss_pred cCCceEEEchHHHh-----hCCCCcccCCEEEeeccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcC
Confidence 3 589999999543 23446789999999999984 233344556667788999999998877666555555
Q ss_pred CCCeEEeeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc--CCeEEEeccCCCH
Q psy13286 152 KDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQ 229 (351)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~ 229 (351)
.++..+..... ...++..++...........+...+ ..+++++|||+++++++.+++.|+.. +..+..+||+|++
T Consensus 622 ~d~s~I~~~p~-~R~~V~t~v~~~~~~~i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~ 698 (926)
T TIGR00580 622 RDLSIIATPPE-DRLPVRTFVMEYDPELVREAIRREL--LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTE 698 (926)
T ss_pred CCcEEEecCCC-CccceEEEEEecCHHHHHHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCH
Confidence 56555544322 1223434333222211112222222 24678999999999999999999985 6889999999999
Q ss_pred HHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCC-ChhhHhhhccccccCCCceeEEEEeccc------hH
Q psy13286 230 AHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPK-MAETYLHRIGRSGRYGHLGIAINLITYE------DR 302 (351)
Q Consensus 230 ~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~-s~~~~~q~~GR~gR~~~~~~~i~~~~~~------~~ 302 (351)
.+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|. +..+|.||+||+||.|..|.|++++... ..
T Consensus 699 ~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~ 778 (926)
T TIGR00580 699 NELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQ 778 (926)
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHH
Confidence 9999999999999999999999999999999999999999875 5678999999999999999999998643 34
Q ss_pred HHHHHHHHH
Q psy13286 303 YALHRIEKE 311 (351)
Q Consensus 303 ~~~~~l~~~ 311 (351)
..++.+++.
T Consensus 779 ~RL~~~~~~ 787 (926)
T TIGR00580 779 KRLEAIQEF 787 (926)
T ss_pred HHHHHHHHh
Confidence 445555554
No 44
>KOG0344|consensus
Probab=100.00 E-value=3.1e-40 Score=291.06 Aligned_cols=327 Identities=27% Similarity=0.354 Sum_probs=273.9
Q ss_pred CcccccCCc-----chhhhcccCcCC----CCCceEEEEcCCHHHHHHHHHHHHHHH--hhCCceEEEEECCcchHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAK----ITSKATLIIVPTRELALQTSQICIELA--KHLNVKVMVTTGGTNLRDDIM 69 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~ 69 (351)
|.+|||||| .+|++.+|.... ..|-+++|+.|+++|+.|++..+.++. ...+.+...+.......+...
T Consensus 177 lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a 256 (593)
T KOG0344|consen 177 LACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPA 256 (593)
T ss_pred EEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccc
Confidence 458999995 889998887665 567899999999999999999999998 444555544444322221111
Q ss_pred H-HhCCCcEEEEccHHHHHHHhccC--cCCCCccEEEEcccccccCc-chHHHHHHHHHhCCCC-CcEEEEEeeCcchHH
Q psy13286 70 R-IYQKVHLIIATPGRILDLMDKQV--ANMDHCKILVLDEADKLLSQ-DFKGMLDHVISILPHE-RQILLYSATFPLTVK 144 (351)
Q Consensus 70 ~-~~~~~~Ilv~Tp~~l~~~l~~~~--~~~~~~~lvViDE~h~~~~~-~~~~~~~~~~~~~~~~-~~~i~~SaT~~~~~~ 144 (351)
. ....++++|+||.++...+..+. .++..+.++|+||+|++.+. .|...+..+++.+..+ ..+-+||||.+..+.
T Consensus 257 ~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VE 336 (593)
T KOG0344|consen 257 FLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVE 336 (593)
T ss_pred hhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHH
Confidence 1 12247899999999999988776 57899999999999999998 8888888888887654 456688999999999
Q ss_pred HHHHHhcCCCeEEeeccc-cccCCceEEEEEcC-cccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHH-HhcCCeEE
Q psy13286 145 NFMEKHLKDPYEINLMEE-LTLKGVTQYYAFVQ-ERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKI-TELGYCCY 221 (351)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L-~~~~~~~~ 221 (351)
+.++....++..+.+... .....+.+...++. +..|.-.+.+++...-..+++||+.+.+.|..+...| .-.++.+.
T Consensus 337 E~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~ 416 (593)
T KOG0344|consen 337 EWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVD 416 (593)
T ss_pred HHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCccee
Confidence 999988887777666432 23444556555554 4578888999998887789999999999999999999 56689999
Q ss_pred EeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccch
Q psy13286 222 YIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYED 301 (351)
Q Consensus 222 ~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~ 301 (351)
.+||+.++.+|++.++.|+.|++.+|+||+.+++|+|+.+++.||+||.|.+..+|+||+||+||.|+.|.+++||...|
T Consensus 417 vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d 496 (593)
T KOG0344|consen 417 VIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQD 496 (593)
T ss_pred eEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCCCccccccc
Q psy13286 302 RYALHRIEKELGTEIKSIPKVIDPAL 327 (351)
Q Consensus 302 ~~~~~~l~~~l~~~~~~~~~~~~~~~ 327 (351)
...++-+...+...-.++|+.+..+.
T Consensus 497 ~~~ir~iae~~~~sG~evpe~~m~~~ 522 (593)
T KOG0344|consen 497 MPRIRSIAEVMEQSGCEVPEKIMGIK 522 (593)
T ss_pred chhhhhHHHHHHHcCCcchHHHHhhh
Confidence 99999999998888899998875543
No 45
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.6e-39 Score=310.08 Aligned_cols=288 Identities=22% Similarity=0.321 Sum_probs=212.8
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+++|||||| .+|++..+. .++++||++|+++|+.|+++.++++.. .++++..++|+...... ....+
T Consensus 43 lv~APTGSGKTlia~lail~~l~----~~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~ 114 (737)
T PRK02362 43 LAAIPTASGKTLIAELAMLKAIA----RGGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDN 114 (737)
T ss_pred EEECCCcchHHHHHHHHHHHHHh----cCCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCC
Confidence 578999997 455666553 347999999999999999999998754 48899999998764432 23468
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhC---CCCCcEEEEEeeCcchHHHHHHHhcC
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISIL---PHERQILLYSATFPLTVKNFMEKHLK 152 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~---~~~~~~i~~SaT~~~~~~~~~~~~~~ 152 (351)
+|+|+||+++..+++++...+.+++++|+||+|.+.+.+++..+..++..+ ....|++++|||+++. .++. .++.
T Consensus 115 ~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la-~wl~ 192 (737)
T PRK02362 115 DIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELA-DWLD 192 (737)
T ss_pred CEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHH-HHhC
Confidence 999999999999888766667899999999999998888887777665443 4678999999999753 2222 2222
Q ss_pred C--------CeEEee--c--cccccCCceEEEEEc-CcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc---
Q psy13286 153 D--------PYEINL--M--EELTLKGVTQYYAFV-QERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL--- 216 (351)
Q Consensus 153 ~--------~~~~~~--~--~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~--- 216 (351)
. |+.+.. . ....... .+..... ........+...+. .++++||||++++.|+.+++.|...
T Consensus 193 ~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~ 269 (737)
T PRK02362 193 AELVDSEWRPIDLREGVFYGGAIHFDD-SQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKK 269 (737)
T ss_pred CCcccCCCCCCCCeeeEecCCeecccc-ccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhh
Confidence 1 111100 0 0000000 0000000 00122223333332 5678999999999999998888643
Q ss_pred ---------------------------------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCC
Q psy13286 217 ---------------------------------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVN 263 (351)
Q Consensus 217 ---------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~ 263 (351)
..++.++|+++++.+|..+++.|++|.++|||||+++++|+|+|+.+
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~ 349 (737)
T PRK02362 270 TLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARR 349 (737)
T ss_pred cCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceE
Confidence 13688999999999999999999999999999999999999999999
Q ss_pred EEEE----ec-----CCCChhhHhhhccccccCCCc--eeEEEEeccch
Q psy13286 264 VVIN----FD-----FPKMAETYLHRIGRSGRYGHL--GIAINLITYED 301 (351)
Q Consensus 264 ~Vi~----~~-----~p~s~~~~~q~~GR~gR~~~~--~~~i~~~~~~~ 301 (351)
+||. |+ .|.+..+|.||+|||||.|.+ |.+++++...+
T Consensus 350 VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 350 VIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred EEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 9986 65 588899999999999999865 88898887654
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.9e-38 Score=301.91 Aligned_cols=281 Identities=17% Similarity=0.203 Sum_probs=206.4
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHHh
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRIY 72 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~ 72 (351)
|++++|||| ++|++..+ ..+.+++|++||++|+.|+++.+++++...++++..++|+.+..+. +..+.
T Consensus 286 Ll~~~TGSGKT~va~~~il~~~----~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~ 361 (681)
T PRK10917 286 LLQGDVGSGKTVVAALAALAAI----EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIA 361 (681)
T ss_pred EEECCCCCcHHHHHHHHHHHHH----HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 589999997 44554444 2357999999999999999999999999999999999999875333 33343
Q ss_pred C-CCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc
Q psy13286 73 Q-KVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL 151 (351)
Q Consensus 73 ~-~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 151 (351)
+ .++|+|+||..+.+ ...+.+++++|+||+|++... ....+......++++++|||+.+....+.....
T Consensus 362 ~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~-----qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~ 431 (681)
T PRK10917 362 SGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE-----QRLALREKGENPHVLVMTATPIPRTLAMTAYGD 431 (681)
T ss_pred CCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH-----HHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCC
Confidence 4 59999999988754 234789999999999985322 222333345568899999998776544433221
Q ss_pred CCCeEEeeccccccCCceEEEEEcCcccHHHHHHHHHhh-CCCCcEEEEeCch--------HHHHHHHHHHHhc--CCeE
Q psy13286 152 KDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSK-LQINQSIIFCNST--------QRVELLAKKITEL--GYCC 220 (351)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~lIf~~~~--------~~~~~l~~~L~~~--~~~~ 220 (351)
.+...+.... .....+...+.. .......+..+... ..+.+++|||+.. ..+..+++.|... +..+
T Consensus 432 ~~~s~i~~~p-~~r~~i~~~~~~--~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v 508 (681)
T PRK10917 432 LDVSVIDELP-PGRKPITTVVIP--DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRV 508 (681)
T ss_pred CceEEEecCC-CCCCCcEEEEeC--cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcE
Confidence 2222221111 112223333322 22222222222222 3467899999854 3456778888765 4789
Q ss_pred EEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCC-ChhhHhhhccccccCCCceeEEEEec
Q psy13286 221 YYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPK-MAETYLHRIGRSGRYGHLGIAINLIT 298 (351)
Q Consensus 221 ~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~-s~~~~~q~~GR~gR~~~~~~~i~~~~ 298 (351)
..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|. ...+|.|+.||+||.|..|.|++++.
T Consensus 509 ~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 509 GLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999997 46788899999999999999999995
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.6e-37 Score=306.85 Aligned_cols=281 Identities=18% Similarity=0.176 Sum_probs=215.7
Q ss_pred CcccccCCc--ch---hhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHH---Hh
Q psy13286 1 MVQARQEPT--QF---LYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMR---IY 72 (351)
Q Consensus 1 ~~~a~tgs~--~l---~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~ 72 (351)
|++++||+| .+ +++..+ ..+++++||+||++|+.|+++.+++.+...++++..+++..+..++... +.
T Consensus 625 Ll~a~TGsGKT~val~aa~~~~----~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~ 700 (1147)
T PRK10689 625 LVCGDVGFGKTEVAMRAAFLAV----ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAA 700 (1147)
T ss_pred EEEcCCCcCHHHHHHHHHHHHH----HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHH
Confidence 578999997 22 332222 2358999999999999999999998887778888888888775554332 22
Q ss_pred -CCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc
Q psy13286 73 -QKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL 151 (351)
Q Consensus 73 -~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 151 (351)
..++|+|+||+.+. ....+.+++++||||+|++. +. ....+..++..+|++++|||+.+....+....+
T Consensus 701 ~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG---~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl 770 (1147)
T PRK10689 701 EGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFG---VR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 (1147)
T ss_pred hCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcc---hh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhC
Confidence 36899999997542 23456899999999999862 22 234456677889999999999888777777777
Q ss_pred CCCeEEeeccccccCCceEEEEEcCcc-cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc--CCeEEEeccCCC
Q psy13286 152 KDPYEINLMEELTLKGVTQYYAFVQER-QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMA 228 (351)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~ 228 (351)
.++..+...... ...+..++...... .+...+..+. .+++++|||++++.++.+++.|++. +.++..+||+|+
T Consensus 771 ~d~~~I~~~p~~-r~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~ 846 (1147)
T PRK10689 771 RDLSIIATPPAR-RLAVKTFVREYDSLVVREAILREIL---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 (1147)
T ss_pred CCcEEEecCCCC-CCCceEEEEecCcHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence 787776553322 22344443332221 1222222222 3578999999999999999999987 778999999999
Q ss_pred HHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCC-CChhhHhhhccccccCCCceeEEEEecc
Q psy13286 229 QAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFP-KMAETYLHRIGRSGRYGHLGIAINLITY 299 (351)
Q Consensus 229 ~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p-~s~~~~~q~~GR~gR~~~~~~~i~~~~~ 299 (351)
+.+|.+++++|++|+.+|||||+++++|+|+|++++||..+.. .+...|.|++||+||.|..|.|++++..
T Consensus 847 q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred HHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 9999999999999999999999999999999999999965543 3456899999999999999999999854
No 48
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-37 Score=301.35 Aligned_cols=290 Identities=22% Similarity=0.308 Sum_probs=215.0
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|+|||||| .+|++..+.. .++++|||+|+++|+.|+++.++++. ..++++..++|+...... ....+
T Consensus 43 lv~apTGsGKT~~~~l~il~~l~~---~~~~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~ 115 (720)
T PRK00254 43 VLAIPTASGKTLVAEIVMVNKLLR---EGGKAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKY 115 (720)
T ss_pred EEECCCCcHHHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccC
Confidence 578999996 4666665543 24799999999999999999998864 468999999998765433 23568
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCe
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPY 155 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 155 (351)
+|+|+||+++..++++....+++++++|+||+|.+.+.+++..+..++..+...+|++++|||+++. .++.. ++....
T Consensus 116 ~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~ 193 (720)
T PRK00254 116 DIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAEL 193 (720)
T ss_pred CEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCcc
Confidence 9999999999988887666789999999999999988888899999999988899999999999753 33443 333221
Q ss_pred EEeeccccccC-C-ceEEEEEcCcc-------cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc----------
Q psy13286 156 EINLMEELTLK-G-VTQYYAFVQER-------QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL---------- 216 (351)
Q Consensus 156 ~~~~~~~~~~~-~-~~~~~~~~~~~-------~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~---------- 216 (351)
........... . ..+.+...... .....+...+. .++++||||++++.|+.++..|...
T Consensus 194 ~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~ 271 (720)
T PRK00254 194 VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPEL 271 (720)
T ss_pred ccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhH
Confidence 11110110000 0 00001111111 11122233333 3578999999999998877666321
Q ss_pred -----------------------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEE------
Q psy13286 217 -----------------------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVIN------ 267 (351)
Q Consensus 217 -----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~------ 267 (351)
..++.++|++|++++|..+.+.|++|.++|||||+++++|+|+|+.++||.
T Consensus 272 ~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~ 351 (720)
T PRK00254 272 RALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYS 351 (720)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcC
Confidence 236899999999999999999999999999999999999999999998884
Q ss_pred -ecCCC-ChhhHhhhccccccCC--CceeEEEEeccch
Q psy13286 268 -FDFPK-MAETYLHRIGRSGRYG--HLGIAINLITYED 301 (351)
Q Consensus 268 -~~~p~-s~~~~~q~~GR~gR~~--~~~~~i~~~~~~~ 301 (351)
++.|. +..+|.||+|||||.| ..|.++++....+
T Consensus 352 ~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 352 NFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred CCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 44433 4679999999999975 5689999887654
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3e-37 Score=293.16 Aligned_cols=281 Identities=19% Similarity=0.223 Sum_probs=203.6
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHHh
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRIY 72 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~ 72 (351)
||+++|||| ++|++..+ ..+.+++|++||++|+.|+++.+++++...++++..++|+.+..+. +..+.
T Consensus 260 Ll~g~TGSGKT~va~l~il~~~----~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~ 335 (630)
T TIGR00643 260 LLQGDVGSGKTLVAALAMLAAI----EAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIA 335 (630)
T ss_pred EEECCCCCcHHHHHHHHHHHHH----HcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHh
Confidence 589999997 34444443 2357999999999999999999999999889999999999875442 33333
Q ss_pred C-CCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCC--CCCcEEEEEeeCcchHHHHHHH
Q psy13286 73 Q-KVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILP--HERQILLYSATFPLTVKNFMEK 149 (351)
Q Consensus 73 ~-~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~--~~~~~i~~SaT~~~~~~~~~~~ 149 (351)
. .++|+|+||..+.+. ..+.+++++|+||+|++...... .+..... ..++++++|||+.+....+...
T Consensus 336 ~g~~~IiVgT~~ll~~~-----~~~~~l~lvVIDEaH~fg~~qr~----~l~~~~~~~~~~~~l~~SATp~prtl~l~~~ 406 (630)
T TIGR00643 336 SGQIHLVVGTHALIQEK-----VEFKRLALVIIDEQHRFGVEQRK----KLREKGQGGFTPHVLVMSATPIPRTLALTVY 406 (630)
T ss_pred CCCCCEEEecHHHHhcc-----ccccccceEEEechhhccHHHHH----HHHHhcccCCCCCEEEEeCCCCcHHHHHHhc
Confidence 3 589999999987542 34789999999999986433211 2222222 2678999999987654433221
Q ss_pred hcCCCeEEeeccccccCCceEEEEEcCcccHHHHHHHHHhh-CCCCcEEEEeCch--------HHHHHHHHHHHhc--CC
Q psy13286 150 HLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSK-LQINQSIIFCNST--------QRVELLAKKITEL--GY 218 (351)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~lIf~~~~--------~~~~~l~~~L~~~--~~ 218 (351)
...+...+.... .....+...+ .....+...+..+... ..+.+++|||+.. ..++.+++.|... ++
T Consensus 407 ~~l~~~~i~~~p-~~r~~i~~~~--~~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~ 483 (630)
T TIGR00643 407 GDLDTSIIDELP-PGRKPITTVL--IKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKY 483 (630)
T ss_pred CCcceeeeccCC-CCCCceEEEE--eCcchHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCC
Confidence 111111111111 1112222222 2222232333333333 2467899999875 4566777887764 67
Q ss_pred eEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCC-ChhhHhhhccccccCCCceeEEEEe
Q psy13286 219 CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPK-MAETYLHRIGRSGRYGHLGIAINLI 297 (351)
Q Consensus 219 ~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~-s~~~~~q~~GR~gR~~~~~~~i~~~ 297 (351)
.+..+||+|+.++|.++++.|++|+.+|||||+++++|+|+|++++||+++.|. +...|.|+.||+||.|..|.|++++
T Consensus 484 ~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 484 NVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 899999999999999999999999999999999999999999999999999986 5778889999999999999999998
No 50
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.2e-37 Score=267.36 Aligned_cols=298 Identities=18% Similarity=0.268 Sum_probs=220.2
Q ss_pred CcccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEE
Q psy13286 1 MVQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78 (351)
Q Consensus 1 ~~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Il 78 (351)
||+.|||-| .++++-....-...++++|+++||+.|+.|++..|+++.....-.+..++|.....+. ...+...+|+
T Consensus 33 LvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R-~~~w~~~kVf 111 (542)
T COG1111 33 LVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEER-EELWAKKKVF 111 (542)
T ss_pred EEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHH-HHHHhhCCEE
Confidence 678999986 3333322212222234999999999999999999999988777889999998875543 3345568999
Q ss_pred EEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHH---HHHHhcCCCe
Q psy13286 79 IATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKN---FMEKHLKDPY 155 (351)
Q Consensus 79 v~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~---~~~~~~~~~~ 155 (351)
|+||+.+.+.+..+.+++.++.++||||||+-....-...+........+++.++++||||..+... ..++.....+
T Consensus 112 vaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~v 191 (542)
T COG1111 112 VATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKV 191 (542)
T ss_pred EeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceE
Confidence 9999999999999999999999999999999877665555666666666888899999998765443 2333322222
Q ss_pred EEeeccccccCC----ceEEEEEc-----------------------------------------------------C-c
Q psy13286 156 EINLMEELTLKG----VTQYYAFV-----------------------------------------------------Q-E 177 (351)
Q Consensus 156 ~~~~~~~~~~~~----~~~~~~~~-----------------------------------------------------~-~ 177 (351)
.+...++.+... +...+..+ . .
T Consensus 192 evrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~ 271 (542)
T COG1111 192 EVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNED 271 (542)
T ss_pred EEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCcc
Confidence 222211111000 00000000 0 0
Q ss_pred ---------------------------------------------------------------------------ccHHH
Q psy13286 178 ---------------------------------------------------------------------------RQKVH 182 (351)
Q Consensus 178 ---------------------------------------------------------------------------~~k~~ 182 (351)
..|+.
T Consensus 272 ~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~ 351 (542)
T COG1111 272 SDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLE 351 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHH
Confidence 01222
Q ss_pred HHHHHH----hhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEE--Ee-------ccCCCHHHHHHHHHHhhcCCccEEEE
Q psy13286 183 CLNTLF----SKLQINQSIIFCNSTQRVELLAKKITELGYCCY--YI-------HARMAQAHRNRVFHDFRSGLCRNLVC 249 (351)
Q Consensus 183 ~l~~~l----~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~--~~-------~~~~~~~~r~~~~~~f~~g~~~ilv~ 249 (351)
.+..++ ...++.++|||++.+.+|+.+.+.|.+.+..+. ++ ..||++.++.++++.|+.|+.++|||
T Consensus 352 ~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVa 431 (542)
T COG1111 352 KLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVA 431 (542)
T ss_pred HHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEE
Confidence 222222 233567999999999999999999999887763 22 35799999999999999999999999
Q ss_pred eCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccc
Q psy13286 250 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYE 300 (351)
Q Consensus 250 T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~ 300 (351)
|++.++|+|+|.++.||+|++..|+-.++||.||+||. .+|.+++++..+
T Consensus 432 TSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 432 TSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred cccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 99999999999999999999999999999999999998 778888888775
No 51
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=7.4e-37 Score=288.47 Aligned_cols=284 Identities=17% Similarity=0.258 Sum_probs=213.9
Q ss_pred CcccccCCcc-----hhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC-----------------------C
Q psy13286 1 MVQARQEPTQ-----FLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL-----------------------N 52 (351)
Q Consensus 1 ~~~a~tgs~~-----l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-----------------------~ 52 (351)
+++||||||- ++.+. +........+.++++|+|+|+.|+++.++++++.. +
T Consensus 35 ~~~apTGSGKTaa~aafll~-~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~ 113 (844)
T TIGR02621 35 SCSTPTGLGKTSIIAAWLLA-VEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRP 113 (844)
T ss_pred eEecCCCCcccHHHHHhhcc-ccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCC
Confidence 3578999972 33332 22223332345557799999999999999999865 4
Q ss_pred ceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhccCc----------------CCCCccEEEEcccccccCcchH
Q psy13286 53 VKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQVA----------------NMDHCKILVLDEADKLLSQDFK 116 (351)
Q Consensus 53 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~----------------~~~~~~lvViDE~h~~~~~~~~ 116 (351)
+++..++|+.+...++..+..+++|+|+|++.+. ++.+ .+.++.++|+|||| ++.+|.
T Consensus 114 l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~----sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~ 187 (844)
T TIGR02621 114 LAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIG----SRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQ 187 (844)
T ss_pred eEEEEEECCCChHHHHHhcCCCCcEEEECHHHHc----CCccccccccccccccchhhhhccceEEEEehhh--hccccH
Confidence 8899999999999999988889999999965553 3332 26788999999999 678899
Q ss_pred HHHHHHHHhC--CC---CCcEEEEEeeCcchHHHHHHHhcCCCeEEeecc-ccccCCceEEEEEcCcccHHHHHHHHH--
Q psy13286 117 GMLDHVISIL--PH---ERQILLYSATFPLTVKNFMEKHLKDPYEINLME-ELTLKGVTQYYAFVQERQKVHCLNTLF-- 188 (351)
Q Consensus 117 ~~~~~~~~~~--~~---~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~l-- 188 (351)
..+..+.... +. +.|+++||||++.........+..++..+.+.. .....++.++ ..+....|...+...+
T Consensus 188 ~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ 266 (844)
T TIGR02621 188 ELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL-VPPSDEKFLSTMVKELNL 266 (844)
T ss_pred HHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEE-EecChHHHHHHHHHHHHH
Confidence 9999999864 33 269999999999888777777766665554432 2233344443 3333333433322221
Q ss_pred -hhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHH-----HHHHHhhc----CC-------ccEEEEeC
Q psy13286 189 -SKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRN-----RVFHDFRS----GL-------CRNLVCSD 251 (351)
Q Consensus 189 -~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~----g~-------~~ilv~T~ 251 (351)
....++++||||++++.|+.+++.|+..++ ..+||+|++.+|. .+++.|++ |+ ..|||||+
T Consensus 267 ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATd 344 (844)
T TIGR02621 267 LMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTS 344 (844)
T ss_pred HHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccc
Confidence 123467899999999999999999998876 8999999999999 78899987 44 68999999
Q ss_pred cCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCc-eeEEEEe
Q psy13286 252 LFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHL-GIAINLI 297 (351)
Q Consensus 252 ~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~-~~~i~~~ 297 (351)
++++|+||+. ++||++..| .++|+||+||+||.|.. +..+.++
T Consensus 345 VaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 345 AGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred hhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 9999999986 889988777 68999999999999885 3334444
No 52
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6.2e-37 Score=287.48 Aligned_cols=295 Identities=20% Similarity=0.244 Sum_probs=230.5
Q ss_pred CcccccCCc-----chhhhcccCcC----CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPA----KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRI 71 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 71 (351)
||.|||||| .||+++.|... ...+..+|||+|.++|.+++...++.+++..|+.+..-+|+++..+.-...
T Consensus 41 LiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~ 120 (814)
T COG1201 41 LIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKML 120 (814)
T ss_pred EEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhcc
Confidence 688999996 88999888665 234588999999999999999999999999999999999999988887788
Q ss_pred hCCCcEEEEccHHHHHHHhccCc--CCCCccEEEEcccccccCcchHHHHH----HHHHhCCCCCcEEEEEeeCcchHHH
Q psy13286 72 YQKVHLIIATPGRILDLMDKQVA--NMDHCKILVLDEADKLLSQDFKGMLD----HVISILPHERQILLYSATFPLTVKN 145 (351)
Q Consensus 72 ~~~~~Ilv~Tp~~l~~~l~~~~~--~~~~~~lvViDE~h~~~~~~~~~~~~----~~~~~~~~~~~~i~~SaT~~~~~~~ 145 (351)
.+.++|+|+|||+|.-++..... .+.++.++||||+|.+.....+..+. .+....+ +.|.+++|||..+. ..
T Consensus 121 ~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~ 198 (814)
T COG1201 121 KNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG-DFQRIGLSATVGPP-EE 198 (814)
T ss_pred CCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HH
Confidence 88999999999999887766433 47899999999999998876555444 3434444 89999999998743 22
Q ss_pred HHHHhcCC--CeEEeeccccccCCceEEEEEc-------CcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc
Q psy13286 146 FMEKHLKD--PYEINLMEELTLKGVTQYYAFV-------QERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL 216 (351)
Q Consensus 146 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~ 216 (351)
..+..... ++.+..........+.-..-.. ........+..+++++. .+|||+||+..|+.++..|+..
T Consensus 199 varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~ 276 (814)
T COG1201 199 VAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKL 276 (814)
T ss_pred HHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHh
Confidence 33322222 3333322222221111111110 11123455555555554 7999999999999999999998
Q ss_pred C-CeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccC-CCceeEE
Q psy13286 217 G-YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRY-GHLGIAI 294 (351)
Q Consensus 217 ~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~-~~~~~~i 294 (351)
+ ..+..+||+++++.|..+.++|++|+.+.+|||+.++.|+|+.+++.||+++.|.++..++||+||+|+. +...+++
T Consensus 277 ~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ 356 (814)
T COG1201 277 GPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGI 356 (814)
T ss_pred cCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEE
Confidence 7 8999999999999999999999999999999999999999999999999999999999999999999975 5445555
Q ss_pred EEecc
Q psy13286 295 NLITY 299 (351)
Q Consensus 295 ~~~~~ 299 (351)
++...
T Consensus 357 ii~~~ 361 (814)
T COG1201 357 IIAED 361 (814)
T ss_pred EEecC
Confidence 55444
No 53
>KOG0329|consensus
Probab=100.00 E-value=5.4e-38 Score=249.58 Aligned_cols=291 Identities=37% Similarity=0.638 Sum_probs=256.0
Q ss_pred cccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC-CceEEEEECCcchHHHHHHHhCCC
Q psy13286 2 VQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL-NVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 2 ~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
-||++|.| .|+.|+.+.+-.+. ..++++|.||+|+-|+.....+|.++. +.++..++||.+..+....+.+-+
T Consensus 84 cqaksgmgktavfvl~tlqqiepv~g~-vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~P 162 (387)
T KOG0329|consen 84 CQAKSGMGKTAVFVLATLQQIEPVDGQ-VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCP 162 (387)
T ss_pred eecccCCCceeeeehhhhhhcCCCCCe-EEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCC
Confidence 47888885 66677777777665 889999999999999999999999888 489999999999888877888889
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccC-cchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLS-QDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
+|+|+||++++-+.+++.++++++..+|+||++.++. -+.+..++.+.+..|...|++.+|||++.+++.....++.+|
T Consensus 163 hivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdP 242 (387)
T KOG0329|consen 163 HIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDP 242 (387)
T ss_pred eEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCc
Confidence 9999999999999999999999999999999998776 367788999999999999999999999999999999999999
Q ss_pred eEEeeccc--cccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHH
Q psy13286 155 YEINLMEE--LTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHR 232 (351)
Q Consensus 155 ~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 232 (351)
..+.+.++ ....+..++|....+.+|...+.++++..+=.+++||+.+... | +
T Consensus 243 mEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l--------------~---- 297 (387)
T KOG0329|consen 243 MEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L--------------S---- 297 (387)
T ss_pred hhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhh-------h--------------h----
Confidence 88877755 4677899999999999898888888888887889999998764 1 0
Q ss_pred HHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccc-hHHHHHHHHHH
Q psy13286 233 NRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYE-DRYALHRIEKE 311 (351)
Q Consensus 233 ~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~-~~~~~~~l~~~ 311 (351)
| ..+ +|+|+.+++|+|+..++.++|||.|.+.++|+||.|||||.|.+|.+|.|++.. |...+..+...
T Consensus 298 ------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdR 367 (387)
T KOG0329|consen 298 ------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDR 367 (387)
T ss_pred ------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHh
Confidence 2 224 899999999999999999999999999999999999999999999999998765 67778899999
Q ss_pred hccccCCCCcccccccc
Q psy13286 312 LGTEIKSIPKVIDPALY 328 (351)
Q Consensus 312 l~~~~~~~~~~~~~~~~ 328 (351)
+...+.++|+.++...|
T Consensus 368 f~v~i~eLpdeid~s~y 384 (387)
T KOG0329|consen 368 FEVNIKELPDEIDFSTY 384 (387)
T ss_pred hhccHhhcCcccchhhh
Confidence 99999999998765444
No 54
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.4e-35 Score=276.63 Aligned_cols=294 Identities=15% Similarity=0.191 Sum_probs=215.1
Q ss_pred CcccccCCc---chh-----------hhcccCc--CCCCCceEEEEcCCHHHHHHHHHHHHHHHhh---CCceEEEEECC
Q psy13286 1 MVQARQEPT---QFL-----------YLNKLTP--AKITSKATLIIVPTRELALQTSQICIELAKH---LNVKVMVTTGG 61 (351)
Q Consensus 1 ~~~a~tgs~---~l~-----------~l~~l~~--~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~---~~~~v~~~~~~ 61 (351)
+++|+|||| ++| .+..+.. ....++++++++|+++|+.|+...+.+.... .+.++...+|+
T Consensus 183 Iv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg 262 (675)
T PHA02653 183 VLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGS 262 (675)
T ss_pred EEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECC
Confidence 578999997 433 2332211 1223478999999999999999998877655 35678888998
Q ss_pred cchHHHHHHHhCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhC-CCCCcEEEEEeeCc
Q psy13286 62 TNLRDDIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISIL-PHERQILLYSATFP 140 (351)
Q Consensus 62 ~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~ 140 (351)
... ..........+|+|+|+.... ..++++++||+||||.....+ ..+..++... +..+|+++||||++
T Consensus 263 ~~~-~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~~~~~rq~ILmSATl~ 332 (675)
T PHA02653 263 IPD-ELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG--DIIIAVARKHIDKIRSLFLMTATLE 332 (675)
T ss_pred cch-HHhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccch--hHHHHHHHHhhhhcCEEEEEccCCc
Confidence 863 211222336789999976311 136889999999999976654 3344444433 33458999999999
Q ss_pred chHHHHHHHhcCCCeEEeeccccccCCceEEEEEcC----------cccHHHHHHHHHhh--CCCCcEEEEeCchHHHHH
Q psy13286 141 LTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQ----------ERQKVHCLNTLFSK--LQINQSIIFCNSTQRVEL 208 (351)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~l~~--~~~~~~lIf~~~~~~~~~ 208 (351)
.+...+ ..++.++..+.+... ...++.+++.... ...+...+..+... ..++++||||++.++++.
T Consensus 333 ~dv~~l-~~~~~~p~~I~I~gr-t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~ 410 (675)
T PHA02653 333 DDRDRI-KEFFPNPAFVHIPGG-TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEE 410 (675)
T ss_pred HhHHHH-HHHhcCCcEEEeCCC-cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHH
Confidence 887665 567778877776432 3345666665332 11222233333332 235689999999999999
Q ss_pred HHHHHHhc--CCeEEEeccCCCHHHHHHHHHHh-hcCCccEEEEeCcCCCCCCCCCCCEEEEec---CCC---------C
Q psy13286 209 LAKKITEL--GYCCYYIHARMAQAHRNRVFHDF-RSGLCRNLVCSDLFTRGIDVQAVNVVINFD---FPK---------M 273 (351)
Q Consensus 209 l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~---~p~---------s 273 (351)
+++.|++. ++.+..+||++++. ++.++.| ++|+.+|||||+++++|+|+|++++||++| .|. |
T Consensus 411 l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iS 488 (675)
T PHA02653 411 YKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFIS 488 (675)
T ss_pred HHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccC
Confidence 99999887 68999999999975 4566776 789999999999999999999999999998 554 7
Q ss_pred hhhHhhhccccccCCCceeEEEEeccchHHHHHHHH
Q psy13286 274 AETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIE 309 (351)
Q Consensus 274 ~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~ 309 (351)
.++|.||+||+||. .+|.|+.+++..+...+.++.
T Consensus 489 kasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 489 KSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred HHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 88999999999999 789999999988755555555
No 55
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.5e-35 Score=282.77 Aligned_cols=284 Identities=17% Similarity=0.253 Sum_probs=216.5
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHH-HHHhhCCceEEEEECCcchHHHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICI-ELAKHLNVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
+|+|+|||| .++++... ..+++++++.|+++++.|+++.+. .+....+..|........ .....
T Consensus 21 Ii~a~TGSGKTT~vpl~lL~~~----~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~------~~s~~ 90 (819)
T TIGR01970 21 VLEAPPGAGKSTAVPLALLDAP----GIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN------KVSRR 90 (819)
T ss_pred EEECCCCCCHHHHHHHHHHHhh----ccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc------ccCCC
Confidence 578999997 33444443 234699999999999999999875 444444566665555433 22345
Q ss_pred CcEEEEccHHHHHHHhccCcCCCCccEEEEcccc-cccCcchHH-HHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcC
Q psy13286 75 VHLIIATPGRILDLMDKQVANMDHCKILVLDEAD-KLLSQDFKG-MLDHVISILPHERQILLYSATFPLTVKNFMEKHLK 152 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h-~~~~~~~~~-~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 152 (351)
.+|+|+||+.|.+.+.+.. .++++++||+||+| +.++.++.. .+..+...++...|+++||||++... +..++.
T Consensus 91 t~I~v~T~G~Llr~l~~d~-~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~ 166 (819)
T TIGR01970 91 TRLEVVTEGILTRMIQDDP-ELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER---LSSLLP 166 (819)
T ss_pred CcEEEECCcHHHHHHhhCc-ccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH---HHHHcC
Confidence 7899999999999887643 58999999999999 467766543 33455666778899999999998653 355665
Q ss_pred CCeEEeeccccccCCceEEEEEcCcccHH-----HHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHh---cCCeEEEec
Q psy13286 153 DPYEINLMEELTLKGVTQYYAFVQERQKV-----HCLNTLFSKLQINQSIIFCNSTQRVELLAKKITE---LGYCCYYIH 224 (351)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~---~~~~~~~~~ 224 (351)
++..+..... ...+.++|.......+. ..+..+++. ..+.+|||+++.++++.+++.|++ .++.+..+|
T Consensus 167 ~~~vI~~~gr--~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLH 243 (819)
T TIGR01970 167 DAPVVESEGR--SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLY 243 (819)
T ss_pred CCcEEEecCc--ceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 5544444322 22355666555443332 234444444 357899999999999999999987 378899999
Q ss_pred cCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCC------------------ChhhHhhhcccccc
Q psy13286 225 ARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPK------------------MAETYLHRIGRSGR 286 (351)
Q Consensus 225 ~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~------------------s~~~~~q~~GR~gR 286 (351)
|+++.++|.++++.|++|+.+|+|||+++++|+|||++++||+++.|. |.++|.||.||+||
T Consensus 244 g~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR 323 (819)
T TIGR01970 244 GELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGR 323 (819)
T ss_pred CCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCC
Confidence 999999999999999999999999999999999999999999999875 33468999999999
Q ss_pred CCCceeEEEEeccchH
Q psy13286 287 YGHLGIAINLITYEDR 302 (351)
Q Consensus 287 ~~~~~~~i~~~~~~~~ 302 (351)
. .+|.||.++++.+.
T Consensus 324 ~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 324 L-EPGVCYRLWSEEQH 338 (819)
T ss_pred C-CCCEEEEeCCHHHH
Confidence 9 89999999988754
No 56
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=6.8e-36 Score=287.64 Aligned_cols=285 Identities=20% Similarity=0.251 Sum_probs=204.8
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|+|||||| .++++..+. .+++++|++|+++|+.|+++.++++. ..+.++...+|+...... ....+
T Consensus 41 lv~apTGSGKTl~a~lail~~l~----~~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~ 112 (674)
T PRK01172 41 IVSVPTAAGKTLIAYSAIYETFL----AGLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRY 112 (674)
T ss_pred EEECCCCchHHHHHHHHHHHHHH----hCCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccC
Confidence 578999997 334444432 24789999999999999999998864 468888888887754332 23468
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHh---CCCCCcEEEEEeeCcchHHHHHHHhcC
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISI---LPHERQILLYSATFPLTVKNFMEKHLK 152 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~---~~~~~~~i~~SaT~~~~~~~~~~~~~~ 152 (351)
+|+|+||+++..++.++...+.+++++|+||+|++.+.+++..+..++.. .+...|++++|||+++. .++.+ ++.
T Consensus 113 dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~ 190 (674)
T PRK01172 113 DVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLN 190 (674)
T ss_pred CEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhC
Confidence 99999999999888877766889999999999999887777766665443 45678999999999753 33333 332
Q ss_pred CCeEEeeccccccCCceEE-------EEEcCcccHHHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhc-------
Q psy13286 153 DPYEINLMEELTLKGVTQY-------YAFVQERQKVHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITEL------- 216 (351)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~k~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~~~------- 216 (351)
.... . ....+.+.... +.......... +..++.. .+++++||||++++.++.++..|...
T Consensus 191 ~~~~-~--~~~r~vpl~~~i~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~ 266 (674)
T PRK01172 191 ASLI-K--SNFRPVPLKLGILYRKRLILDGYERSQVD-INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDF 266 (674)
T ss_pred CCcc-C--CCCCCCCeEEEEEecCeeeeccccccccc-HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccc
Confidence 2111 0 11111111111 10001111111 2222222 34678999999999999999888653
Q ss_pred ------------------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecC--------
Q psy13286 217 ------------------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDF-------- 270 (351)
Q Consensus 217 ------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~-------- 270 (351)
..++.++|++++.++|..+.+.|++|..+|||||+++++|+|+|+. .||+.+.
T Consensus 267 ~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~ 345 (674)
T PRK01172 267 KVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGI 345 (674)
T ss_pred cccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCc
Confidence 1357899999999999999999999999999999999999999985 5555443
Q ss_pred -CCChhhHhhhccccccCCC--ceeEEEEeccc
Q psy13286 271 -PKMAETYLHRIGRSGRYGH--LGIAINLITYE 300 (351)
Q Consensus 271 -p~s~~~~~q~~GR~gR~~~--~~~~i~~~~~~ 300 (351)
|.+..+|.||+|||||.|. .|.+++++...
T Consensus 346 ~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 346 RYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred eeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 4578899999999999985 56677776544
No 57
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.8e-35 Score=282.10 Aligned_cols=284 Identities=15% Similarity=0.238 Sum_probs=215.6
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHH-HHhhCCceEEEEECCcchHHHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIE-LAKHLNVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
+|+|+|||| .+|++... ..+++++++.|++++|.|+++.+.+ +....+..+....++.+. ....
T Consensus 24 vv~A~TGSGKTt~~pl~lL~~~----~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~------~~~~ 93 (812)
T PRK11664 24 LLKAPTGAGKSTWLPLQLLQHG----GINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESK------VGPN 93 (812)
T ss_pred EEEcCCCCCHHHHHHHHHHHcC----CcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccc------cCCC
Confidence 479999997 33344332 2236899999999999999998754 445556777777666542 1235
Q ss_pred CcEEEEccHHHHHHHhccCcCCCCccEEEEccccc-ccCcchH-HHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcC
Q psy13286 75 VHLIIATPGRILDLMDKQVANMDHCKILVLDEADK-LLSQDFK-GMLDHVISILPHERQILLYSATFPLTVKNFMEKHLK 152 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~-~~~~~~~-~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 152 (351)
.+|+|+||+.+.+.+.... .++++++||+||+|. .++.++. ..+..+...++...|+++||||++.. .+..++.
T Consensus 94 t~I~v~T~G~Llr~l~~d~-~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~---~l~~~~~ 169 (812)
T PRK11664 94 TRLEVVTEGILTRMIQRDP-ELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND---RLQQLLP 169 (812)
T ss_pred CcEEEEChhHHHHHHhhCC-CcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH---HHHHhcC
Confidence 6899999999999887643 589999999999996 3444432 23345556677888999999999864 2345665
Q ss_pred CCeEEeeccccccCCceEEEEEcCcccHHH-----HHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHh---cCCeEEEec
Q psy13286 153 DPYEINLMEELTLKGVTQYYAFVQERQKVH-----CLNTLFSKLQINQSIIFCNSTQRVELLAKKITE---LGYCCYYIH 224 (351)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-----~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~---~~~~~~~~~ 224 (351)
++..+..... ...+.++|.......+.. .+..++.. .++.+|||+++.++++.+++.|+. .++.+..+|
T Consensus 170 ~~~~I~~~gr--~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lh 246 (812)
T PRK11664 170 DAPVIVSEGR--SFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLY 246 (812)
T ss_pred CCCEEEecCc--cccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEee
Confidence 5555444322 234566666555444432 33444443 358899999999999999999987 467899999
Q ss_pred cCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCC------------------ChhhHhhhcccccc
Q psy13286 225 ARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPK------------------MAETYLHRIGRSGR 286 (351)
Q Consensus 225 ~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~------------------s~~~~~q~~GR~gR 286 (351)
|+++.++|.++++.|++|+.+|+|||+++++|+|||++++||+++.++ |.++|.||.||+||
T Consensus 247 g~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR 326 (812)
T PRK11664 247 GALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGR 326 (812)
T ss_pred CCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCC
Confidence 999999999999999999999999999999999999999999988764 34589999999999
Q ss_pred CCCceeEEEEeccchH
Q psy13286 287 YGHLGIAINLITYEDR 302 (351)
Q Consensus 287 ~~~~~~~i~~~~~~~~ 302 (351)
. .+|.||.++++.+.
T Consensus 327 ~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 327 L-EPGICLHLYSKEQA 341 (812)
T ss_pred C-CCcEEEEecCHHHH
Confidence 9 69999999987653
No 58
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.4e-35 Score=264.71 Aligned_cols=291 Identities=16% Similarity=0.200 Sum_probs=198.7
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcch-----------
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNL----------- 64 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~----------- 64 (351)
+|+|||||| .+|++..+.. ..+.+++|++|+++|+.|+++.++.++.. ++..+++....
T Consensus 3 vi~apTGsGKT~~~~~~~l~~~~~--~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
T TIGR01587 3 VIEAPTGYGKTEAALLWALHSIKS--QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSEE 77 (358)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhh--CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCchh
Confidence 578999997 5555555432 23469999999999999999999887532 34444443221
Q ss_pred -HHHHHHH------hCCCcEEEEccHHHHHHHhccCc----C--CCCccEEEEcccccccCcchHHHHHHHHHhC-CCCC
Q psy13286 65 -RDDIMRI------YQKVHLIIATPGRILDLMDKQVA----N--MDHCKILVLDEADKLLSQDFKGMLDHVISIL-PHER 130 (351)
Q Consensus 65 -~~~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~----~--~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~-~~~~ 130 (351)
....... ....+|+|+||+++...+..... . ....+++|+||+|.+....+.. +..++..+ ....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~ 156 (358)
T TIGR01587 78 FEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDV 156 (358)
T ss_pred HHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCC
Confidence 0111111 12467999999999876654211 1 1133789999999988765443 44433333 3568
Q ss_pred cEEEEEeeCcchHHHHHHHhcCCCeEEeeccccccCCceEEEEEc--CcccHHHHHHHHHhhC-CCCcEEEEeCchHHHH
Q psy13286 131 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFV--QERQKVHCLNTLFSKL-QINQSIIFCNSTQRVE 207 (351)
Q Consensus 131 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~~~l~~~-~~~~~lIf~~~~~~~~ 207 (351)
|++++|||++..+..+.......+...............+.+... ....+...+..++... .++++||||+++++++
T Consensus 157 ~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~ 236 (358)
T TIGR01587 157 PILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQ 236 (358)
T ss_pred CEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHH
Confidence 899999999977766666543322111111000000111222111 1224555666666543 4689999999999999
Q ss_pred HHHHHHHhcCC--eEEEeccCCCHHHHHH----HHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhc
Q psy13286 208 LLAKKITELGY--CCYYIHARMAQAHRNR----VFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRI 281 (351)
Q Consensus 208 ~l~~~L~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~ 281 (351)
.+++.|++.+. .+..+||++++.+|.+ +++.|++|+..+||||+++++|+|++ +++||++..| .++|+||+
T Consensus 237 ~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~ 313 (358)
T TIGR01587 237 EFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRL 313 (358)
T ss_pred HHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHh
Confidence 99999988765 5899999999999876 48899999999999999999999995 7888888777 78999999
Q ss_pred cccccCCCc----eeEEEEeccc
Q psy13286 282 GRSGRYGHL----GIAINLITYE 300 (351)
Q Consensus 282 GR~gR~~~~----~~~i~~~~~~ 300 (351)
||+||.|.. |.++++....
T Consensus 314 GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 314 GRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred ccccCCCCCCCCCCeEEEEeecC
Confidence 999998754 3566666543
No 59
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.5e-35 Score=271.71 Aligned_cols=278 Identities=14% Similarity=0.142 Sum_probs=193.7
Q ss_pred CcccccCCcch---hhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcE
Q psy13286 1 MVQARQEPTQF---LYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHL 77 (351)
Q Consensus 1 ~~~a~tgs~~l---~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~I 77 (351)
+++||||+|-- +.+.....+ ....++|||+||++|+.||.+.++++.......+..+.++.... .+.+|
T Consensus 133 il~apTGsGKT~i~~~l~~~~~~-~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I 204 (501)
T PHA02558 133 LLNLPTSAGKSLIQYLLSRYYLE-NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPI 204 (501)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCE
Confidence 47899999822 222211122 22359999999999999999999998765445555555555321 35789
Q ss_pred EEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHH--HHHhcCCCe
Q psy13286 78 IIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNF--MEKHLKDPY 155 (351)
Q Consensus 78 lv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~--~~~~~~~~~ 155 (351)
+|+||+++.+... ..+.+++++|+||||++....+ ..++..+++..+++++|||+.+..... ....++ +.
T Consensus 205 ~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~~~----~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG-~i 276 (501)
T PHA02558 205 VVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGKSL----TSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFG-DI 276 (501)
T ss_pred EEeeHHHHhhchh---hhccccCEEEEEchhcccchhH----HHHHHhhhccceEEEEeccCCCccccHHHHHHhhC-Cc
Confidence 9999999976432 2367899999999999877654 455555656678999999996532211 111222 11
Q ss_pred EEeec--ccccc---CCceEE------------------E-----EEcCcccHHHHHHHHHhh--CCCCcEEEEeCchHH
Q psy13286 156 EINLM--EELTL---KGVTQY------------------Y-----AFVQERQKVHCLNTLFSK--LQINQSIIFCNSTQR 205 (351)
Q Consensus 156 ~~~~~--~~~~~---~~~~~~------------------~-----~~~~~~~k~~~l~~~l~~--~~~~~~lIf~~~~~~ 205 (351)
...+. +.... ...... + .......+...+..+... ..+.+++|||++.++
T Consensus 277 ~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h 356 (501)
T PHA02558 277 FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEH 356 (501)
T ss_pred eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHH
Confidence 11110 00000 000000 0 000111222233333322 235789999999999
Q ss_pred HHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEe-CcCCCCCCCCCCCEEEEecCCCChhhHhhhcccc
Q psy13286 206 VELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS-DLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRS 284 (351)
Q Consensus 206 ~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T-~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~ 284 (351)
++.+++.|+..+..+..+||+++.++|..+++.|++|+..+|||| +.+++|+|+|++++||++.++.|...|+||+||+
T Consensus 357 ~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~ 436 (501)
T PHA02558 357 GKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRV 436 (501)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhcc
Confidence 999999999999999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred ccCCCceeEE
Q psy13286 285 GRYGHLGIAI 294 (351)
Q Consensus 285 gR~~~~~~~i 294 (351)
+|.+.++...
T Consensus 437 ~R~~~~K~~~ 446 (501)
T PHA02558 437 LRKHGSKSIA 446 (501)
T ss_pred ccCCCCCceE
Confidence 9987654333
No 60
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2e-35 Score=280.63 Aligned_cols=292 Identities=22% Similarity=0.255 Sum_probs=215.4
Q ss_pred CcccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEE
Q psy13286 1 MVQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78 (351)
Q Consensus 1 ~~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Il 78 (351)
||+|||||| +++.+..+......+.+++|++|+++|+.|.++.++ .....|++|...+|+...... ...+++|+
T Consensus 51 li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~Vi 126 (766)
T COG1204 51 LISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVI 126 (766)
T ss_pred EEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEE
Confidence 588999996 666665555444446899999999999999999998 446679999999999875553 23569999
Q ss_pred EEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCC---CCCcEEEEEeeCcchHHHHHHHhcCCCe
Q psy13286 79 IATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILP---HERQILLYSATFPLTVKNFMEKHLKDPY 155 (351)
Q Consensus 79 v~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~---~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 155 (351)
|+|||++..++++.......+++||+||+|.+.+...+..+..+..... ...|++++|||+++.. ++....-.++.
T Consensus 127 VtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~-evA~wL~a~~~ 205 (766)
T COG1204 127 VTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAE-EVADWLNAKLV 205 (766)
T ss_pred EEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHH-HHHHHhCCccc
Confidence 9999999999998888889999999999998888767776666655543 3379999999998753 23333222322
Q ss_pred EEeec--cccccCCceEEEEEcCcc-------cHHHHHHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhc---------
Q psy13286 156 EINLM--EELTLKGVTQYYAFVQER-------QKVHCLNTLFSKL-QINQSIIFCNSTQRVELLAKKITEL--------- 216 (351)
Q Consensus 156 ~~~~~--~~~~~~~~~~~~~~~~~~-------~k~~~l~~~l~~~-~~~~~lIf~~~~~~~~~l~~~L~~~--------- 216 (351)
..... ...........+...... .....+..++... .+++++|||+|+..+...|+.+...
T Consensus 206 ~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~ 285 (766)
T COG1204 206 ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDE 285 (766)
T ss_pred ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhh
Confidence 11111 111111222222222211 2233444444433 4679999999999999999999730
Q ss_pred ----------------------------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEE--
Q psy13286 217 ----------------------------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVI-- 266 (351)
Q Consensus 217 ----------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi-- 266 (351)
..++.++|++++.++|..+.+.|+.|.++||+||+++..|+|+|.-.+||
T Consensus 286 ~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~ 365 (766)
T COG1204 286 KIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKD 365 (766)
T ss_pred hhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEee
Confidence 12578999999999999999999999999999999999999999866655
Q ss_pred --Eec-----CCCChhhHhhhccccccCCCc--eeEEEEe
Q psy13286 267 --NFD-----FPKMAETYLHRIGRSGRYGHL--GIAINLI 297 (351)
Q Consensus 267 --~~~-----~p~s~~~~~q~~GR~gR~~~~--~~~i~~~ 297 (351)
.|+ .+.++-+++||+|||||.|-. |.++++.
T Consensus 366 ~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 366 TRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred eEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 355 345678999999999998754 5666666
No 61
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=5.9e-35 Score=256.54 Aligned_cols=295 Identities=21% Similarity=0.217 Sum_probs=231.9
Q ss_pred CcccccCC--cchhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH----HHHhCC
Q psy13286 1 MVQARQEP--TQFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI----MRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs--~~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~ 74 (351)
||+|+|+| +++.-++.+......+++.|+++|..+|++|-++.|++-...+++++..-.|.......- ......
T Consensus 236 lVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~d 315 (830)
T COG1202 236 LVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPD 315 (830)
T ss_pred EEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCC
Confidence 46777777 599999999888887899999999999999999999999888898887777765433321 111235
Q ss_pred CcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHh---CCCCCcEEEEEeeCcchHHHHHHHhc
Q psy13286 75 VHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISI---LPHERQILLYSATFPLTVKNFMEKHL 151 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~---~~~~~~~i~~SaT~~~~~~~~~~~~~ 151 (351)
+||||+|++-+..+++.+ -++.+++.|||||+|.+-+...++.+..+... +.+..|++++|||..+. .++++...
T Consensus 316 ADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~ 393 (830)
T COG1202 316 ADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLG 393 (830)
T ss_pred CcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhC
Confidence 899999999998888877 46899999999999988876656555544333 34578999999998654 45555554
Q ss_pred CCCeEEeeccccccCCceEEEEEcC-cccHHHHHHHHHhhC--------CCCcEEEEeCchHHHHHHHHHHHhcCCeEEE
Q psy13286 152 KDPYEINLMEELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKL--------QINQSIIFCNSTQRVELLAKKITELGYCCYY 222 (351)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~--------~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~ 222 (351)
.+.+.. ...+.++..+..++. +.+|.+.+..+.+.. -.+++|||++|+..|..++..|..+|+.+..
T Consensus 394 a~lV~y----~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~p 469 (830)
T COG1202 394 AKLVLY----DERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAP 469 (830)
T ss_pred CeeEee----cCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCccccc
Confidence 443332 223334555555555 678888888877532 2578999999999999999999999999999
Q ss_pred eccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEE---EecCC-CChhhHhhhccccccCCC--ceeEEEE
Q psy13286 223 IHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVI---NFDFP-KMAETYLHRIGRSGRYGH--LGIAINL 296 (351)
Q Consensus 223 ~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi---~~~~p-~s~~~~~q~~GR~gR~~~--~~~~i~~ 296 (351)
+|++++..+|..+...|.++++.++|+|.+++-|+|+|+-.+|+ -++.. .|+.+|.||+|||||.+- .|+++++
T Consensus 470 YHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyll 549 (830)
T COG1202 470 YHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLL 549 (830)
T ss_pred ccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEE
Confidence 99999999999999999999999999999999999999754433 12223 378999999999999865 4889988
Q ss_pred eccch
Q psy13286 297 ITYED 301 (351)
Q Consensus 297 ~~~~~ 301 (351)
+.+..
T Consensus 550 vepg~ 554 (830)
T COG1202 550 VEPGK 554 (830)
T ss_pred ecCCh
Confidence 87653
No 62
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.5e-34 Score=262.26 Aligned_cols=293 Identities=16% Similarity=0.119 Sum_probs=223.1
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+.+|+||+| ++|++.. .. .++.++|++||++||.|.+++++.+....++++..+.|+.+.. ......++
T Consensus 120 Iae~~TGeGKTla~~lp~~~~---al-~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~--~r~~~y~~ 193 (656)
T PRK12898 120 LAEMQTGEGKTLTATLPAGTA---AL-AGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPD--ERRAAYGA 193 (656)
T ss_pred eeeeeCCCCcHHHHHHHHHHH---hh-cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHH--HHHHHcCC
Confidence 468899996 4455443 33 3489999999999999999999999999999999999997643 33445689
Q ss_pred cEEEEccHHH-HHHHhccCcC-------------------------CCCccEEEEcccccccC---------------c-
Q psy13286 76 HLIIATPGRI-LDLMDKQVAN-------------------------MDHCKILVLDEADKLLS---------------Q- 113 (351)
Q Consensus 76 ~Ilv~Tp~~l-~~~l~~~~~~-------------------------~~~~~lvViDE~h~~~~---------------~- 113 (351)
+|+++|...+ .++|+.+... ...+++.||||+|.++= .
T Consensus 194 dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~ 273 (656)
T PRK12898 194 DITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEAD 273 (656)
T ss_pred CEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCc
Confidence 9999999999 6677654321 25678999999996521 0
Q ss_pred --chHHHHHHHHHhC--------------------------------CC-------------------------------
Q psy13286 114 --DFKGMLDHVISIL--------------------------------PH------------------------------- 128 (351)
Q Consensus 114 --~~~~~~~~~~~~~--------------------------------~~------------------------------- 128 (351)
.+......+...+ +.
T Consensus 274 ~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 353 (656)
T PRK12898 274 EAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVR 353 (656)
T ss_pred hhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 0000000010000 00
Q ss_pred ------------------------------------------------------CCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 129 ------------------------------------------------------ERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 129 ------------------------------------------------------~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
-.++.+||||.+....++.+.|..++
T Consensus 354 d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~v 433 (656)
T PRK12898 354 DGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPV 433 (656)
T ss_pred CCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCe
Confidence 23577999999888788888888877
Q ss_pred eEEeeccccccCCceEEEEEcCcccHHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHH
Q psy13286 155 YEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHR 232 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 232 (351)
..+......... ..+.+..+...+|...+...+... .+.++||||++++.++.+++.|...++.+..+||.++. |
T Consensus 434 v~IPt~kp~~r~-~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~--r 510 (656)
T PRK12898 434 VRIPTNRPSQRR-HLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDA--E 510 (656)
T ss_pred EEeCCCCCccce-ecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHH--H
Confidence 666554443222 334455666778888888888764 35789999999999999999999999999999998654 4
Q ss_pred HHHHHHhhcCCccEEEEeCcCCCCCCCC---CCC-----EEEEecCCCChhhHhhhccccccCCCceeEEEEeccchH
Q psy13286 233 NRVFHDFRSGLCRNLVCSDLFTRGIDVQ---AVN-----VVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDR 302 (351)
Q Consensus 233 ~~~~~~f~~g~~~ilv~T~~~~~G~di~---~~~-----~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~ 302 (351)
+..+..++.+...|+|||+++++|+||+ ++. |||+++.|.|...|.||+||+||.|.+|.+++|++.+|.
T Consensus 511 E~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 511 EAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 5555556666668999999999999999 665 999999999999999999999999999999999998763
No 63
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.9e-33 Score=264.12 Aligned_cols=297 Identities=17% Similarity=0.164 Sum_probs=216.6
Q ss_pred CcccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEE
Q psy13286 1 MVQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78 (351)
Q Consensus 1 ~~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Il 78 (351)
+.+|+||+| +..++..+..+.. |+.+.|++||+.||.|.++++..+....|+++..+.|+.+...+... ..+++|+
T Consensus 95 Iaem~TGeGKTL~a~lp~~l~al~-G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~-~y~~dIv 172 (790)
T PRK09200 95 IAEMQTGEGKTLTATMPLYLNALE-GKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKA-IYEADII 172 (790)
T ss_pred eeeecCCCcchHHHHHHHHHHHHc-CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHH-hcCCCEE
Confidence 357899996 3333333333333 48999999999999999999999999999999999999873333232 3569999
Q ss_pred EEccHHH-HHHHhccC------cCCCCccEEEEcccccccCc----------------chHHHHHHHHHhCCC-------
Q psy13286 79 IATPGRI-LDLMDKQV------ANMDHCKILVLDEADKLLSQ----------------DFKGMLDHVISILPH------- 128 (351)
Q Consensus 79 v~Tp~~l-~~~l~~~~------~~~~~~~lvViDE~h~~~~~----------------~~~~~~~~~~~~~~~------- 128 (351)
++||..+ .++++.+. .....+.++|+||+|.++=+ .+......+...+..
T Consensus 173 ygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d 252 (790)
T PRK09200 173 YTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFD 252 (790)
T ss_pred EECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEe
Confidence 9999999 66665543 24578899999999976310 011111111111100
Q ss_pred --------------------------------------------------------------------------------
Q psy13286 129 -------------------------------------------------------------------------------- 128 (351)
Q Consensus 129 -------------------------------------------------------------------------------- 128 (351)
T Consensus 253 ~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~Gl 332 (790)
T PRK09200 253 EEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGL 332 (790)
T ss_pred cCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHH
Confidence
Q ss_pred ------------------------------CCcEEEEEeeCcchHHHHHHHhcCCCeEEeeccccccCCceEEEEEcCcc
Q psy13286 129 ------------------------------ERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQER 178 (351)
Q Consensus 129 ------------------------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (351)
-..+.+||+|......++.+.|..+...+............ ........
T Consensus 333 hQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt~kp~~r~d~~-~~i~~~~~ 411 (790)
T PRK09200 333 HQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYP-DKVFVTLD 411 (790)
T ss_pred HHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcEEECCCCCCcccccCC-CeEEcCHH
Confidence 12455667766554445544443332222211111111111 12334556
Q ss_pred cHHHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCC
Q psy13286 179 QKVHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRG 256 (351)
Q Consensus 179 ~k~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G 256 (351)
+|...+...+.. ..+.++||||++++.++.++..|...++++..+||.+...++..+...+++| .|+|||+++++|
T Consensus 412 ~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG 489 (790)
T PRK09200 412 EKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRG 489 (790)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcC
Confidence 788888887765 3578999999999999999999999999999999999988888888887777 799999999999
Q ss_pred CCC---CCCC-----EEEEecCCCChhhHhhhccccccCCCceeEEEEeccchH
Q psy13286 257 IDV---QAVN-----VVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDR 302 (351)
Q Consensus 257 ~di---~~~~-----~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~ 302 (351)
+|+ |++. |||+++.|.+...|.||+||+||.|.+|.+++|++.+|.
T Consensus 490 ~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 490 TDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred cCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 999 6898 999999999999999999999999999999999998763
No 64
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.9e-33 Score=278.60 Aligned_cols=270 Identities=19% Similarity=0.240 Sum_probs=205.9
Q ss_pred CcccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcch-----HHHHHHH
Q psy13286 1 MVQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNL-----RDDIMRI 71 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~ 71 (351)
+++|||||| .++++..+ . ..+++++||+||++|+.|+.+.+++++...++.+..+.++... ......+
T Consensus 99 ~i~ApTGsGKT~f~l~~~~~l--~-~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l 175 (1176)
T PRK09401 99 AIIAPTGVGKTTFGLVMSLYL--A-KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERL 175 (1176)
T ss_pred EEEcCCCCCHHHHHHHHHHHH--H-hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHH
Confidence 478999997 23333222 2 2358999999999999999999999999888888877776542 2223333
Q ss_pred h-CCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccC-----------cchH-HHHHHHHHhCCC----------
Q psy13286 72 Y-QKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLS-----------QDFK-GMLDHVISILPH---------- 128 (351)
Q Consensus 72 ~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~-----------~~~~-~~~~~~~~~~~~---------- 128 (351)
. ..++|+|+||++|.+.+. .+...+++++|+||||++++ .+|. +.+..++..++.
T Consensus 176 ~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~ 253 (1176)
T PRK09401 176 KEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEK 253 (1176)
T ss_pred hcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhH
Confidence 4 358999999999998776 34456799999999999986 4564 456666655543
Q ss_pred --------------CCcEEEEEeeCcch-HHHHHHHhcCCCeEEeecc-ccccCCceEEEEEcCcccHHHHHHHHHhhCC
Q psy13286 129 --------------ERQILLYSATFPLT-VKNFMEKHLKDPYEINLME-ELTLKGVTQYYAFVQERQKVHCLNTLFSKLQ 192 (351)
Q Consensus 129 --------------~~~~i~~SaT~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 192 (351)
..|++++|||.++. .... .+.+...+.+.. .....++.+.+..+. ++...+..+++...
T Consensus 254 i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~---l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~ 328 (1176)
T PRK09401 254 IRELEEKIAELKDKKGVLVVSSATGRPRGNRVK---LFRELLGFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRLG 328 (1176)
T ss_pred HHHHHHhhhhcccCCceEEEEeCCCCccchHHH---HhhccceEEecCcccccCCceEEEEEcc--cHHHHHHHHHHhcC
Confidence 68999999999864 3321 122333333332 234456777777665 56777778887665
Q ss_pred CCcEEEEeCchHH---HHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEE----eCcCCCCCCCCC-CCE
Q psy13286 193 INQSIIFCNSTQR---VELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC----SDLFTRGIDVQA-VNV 264 (351)
Q Consensus 193 ~~~~lIf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~----T~~~~~G~di~~-~~~ 264 (351)
.++||||+++.. ++.+++.|+..|+.+..+||++ .+.+++|++|+.+|||| |+.+++|+|+|+ +++
T Consensus 329 -~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~Iry 402 (1176)
T PRK09401 329 -DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRY 402 (1176)
T ss_pred -CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeE
Confidence 579999999877 9999999999999999999999 22359999999999999 589999999999 899
Q ss_pred EEEecCCC------ChhhHhhhcccccc
Q psy13286 265 VINFDFPK------MAETYLHRIGRSGR 286 (351)
Q Consensus 265 Vi~~~~p~------s~~~~~q~~GR~gR 286 (351)
|||||.|. ..+.|.|++||...
T Consensus 403 VI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 403 AIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 99999997 56889999999863
No 65
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.1e-32 Score=257.79 Aligned_cols=294 Identities=14% Similarity=0.152 Sum_probs=213.0
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcc---hHHHHHHHh
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTN---LRDDIMRIY 72 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~ 72 (351)
+++++||+| ++|++. .+.. ++.++|++|+++|+.|+.+++..+.+.+|+++....++.. .........
T Consensus 87 Iaem~TGeGKTLta~Lpa~l---~aL~-g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~ 162 (762)
T TIGR03714 87 IAEMKTGEGKTLTATMPLYL---NALT-GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKI 162 (762)
T ss_pred eeEecCCcchHHHHHHHHHH---Hhhc-CCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHh
Confidence 468999996 445432 2323 3679999999999999999999999999999988776521 222223344
Q ss_pred CCCcEEEEccHHH-HHHHhcc------CcCCCCccEEEEcccccccCcc----------------hHHHHHHHHHhCCC-
Q psy13286 73 QKVHLIIATPGRI-LDLMDKQ------VANMDHCKILVLDEADKLLSQD----------------FKGMLDHVISILPH- 128 (351)
Q Consensus 73 ~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~~~lvViDE~h~~~~~~----------------~~~~~~~~~~~~~~- 128 (351)
.+++|+++||++| .+++..+ ...+..+.++|+||||.++-+. .......+...+..
T Consensus 163 y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~ 242 (762)
T TIGR03714 163 YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKED 242 (762)
T ss_pred CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCC
Confidence 6799999999999 5666432 2236789999999999773210 11111111111100
Q ss_pred --------------------------------------------------------------------------------
Q psy13286 129 -------------------------------------------------------------------------------- 128 (351)
Q Consensus 129 -------------------------------------------------------------------------------- 128 (351)
T Consensus 243 ~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr 322 (762)
T TIGR03714 243 VDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGT 322 (762)
T ss_pred CCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCC
Confidence
Q ss_pred ------------------------------------CCcEEEEEeeCcchHHHHHHHhcCCCeEEeeccccccCCceEEE
Q psy13286 129 ------------------------------------ERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYY 172 (351)
Q Consensus 129 ------------------------------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (351)
-.++.+||+|......++.+-|..+.+.+............ ..
T Consensus 323 ~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~-d~ 401 (762)
T TIGR03714 323 KLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYP-DK 401 (762)
T ss_pred CcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCC-Ce
Confidence 13566777776555556665554332222222211111111 13
Q ss_pred EEcCcccHHHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEe
Q psy13286 173 AFVQERQKVHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS 250 (351)
Q Consensus 173 ~~~~~~~k~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T 250 (351)
.+....+|...+...+.+ ..+.++||||++++.++.++..|...++++..+|+.+...++..+.+.++.| .|+|||
T Consensus 402 i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIAT 479 (762)
T TIGR03714 402 IYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVAT 479 (762)
T ss_pred EEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEc
Confidence 444556788888887765 4578999999999999999999999999999999999998888888877777 799999
Q ss_pred CcCCCCCCCC---------CCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchH
Q psy13286 251 DLFTRGIDVQ---------AVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDR 302 (351)
Q Consensus 251 ~~~~~G~di~---------~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~ 302 (351)
+++++|+||| ++.+|+++++|..... .||.||+||.|.+|.++.|++.+|.
T Consensus 480 dmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 480 SMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred cccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 9999999999 8999999999987666 9999999999999999999998763
No 66
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=7.2e-32 Score=264.45 Aligned_cols=294 Identities=19% Similarity=0.250 Sum_probs=212.6
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
||++|||+| .+++...+ . ..++++|||+||++|+.|+.+.++++....+.++..++|+.+..+ ......++
T Consensus 33 lv~~ptG~GKT~~a~~~i~~~l-~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~-r~~~~~~~ 108 (773)
T PRK13766 33 LVVLPTGLGKTAIALLVIAERL-H--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEK-RAELWEKA 108 (773)
T ss_pred EEEcCCCccHHHHHHHHHHHHH-H--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHH-HHHHHhCC
Confidence 578999997 22344443 2 334799999999999999999999887655568888888876543 33445678
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHH---HHHHHhcC
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVK---NFMEKHLK 152 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~---~~~~~~~~ 152 (351)
+|+|+||+.+...+..+.+.+.+++++|+||||++........+........+.++++++|||+..... ..+.....
T Consensus 109 ~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i 188 (773)
T PRK13766 109 KVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSDEEKIKEVCENLGI 188 (773)
T ss_pred CEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCc
Confidence 999999999988777777788999999999999987654333344444444566789999999843321 11111110
Q ss_pred CCeE--------------------Eeec--cc----------------------cccCCce----------------EE-
Q psy13286 153 DPYE--------------------INLM--EE----------------------LTLKGVT----------------QY- 171 (351)
Q Consensus 153 ~~~~--------------------~~~~--~~----------------------~~~~~~~----------------~~- 171 (351)
.... +.+. .. ....... ..
T Consensus 189 ~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 268 (773)
T PRK13766 189 EHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEI 268 (773)
T ss_pred eEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHh
Confidence 0000 0000 00 0000000 00
Q ss_pred -----------------------------------------------------------------------EEEcCcccH
Q psy13286 172 -----------------------------------------------------------------------YAFVQERQK 180 (351)
Q Consensus 172 -----------------------------------------------------------------------~~~~~~~~k 180 (351)
........|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK 348 (773)
T PRK13766 269 ANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPK 348 (773)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChH
Confidence 000011234
Q ss_pred HHHHHHHHhh----CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccC--------CCHHHHHHHHHHhhcCCccEEE
Q psy13286 181 VHCLNTLFSK----LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAR--------MAQAHRNRVFHDFRSGLCRNLV 248 (351)
Q Consensus 181 ~~~l~~~l~~----~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~ilv 248 (351)
...+..+++. .++.++||||+++..+..+++.|...++.+..+||. +++.+|.++++.|++|+.++||
T Consensus 349 ~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLv 428 (773)
T PRK13766 349 LEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLV 428 (773)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 5555555543 567899999999999999999999999998888886 8999999999999999999999
Q ss_pred EeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEecc
Q psy13286 249 CSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITY 299 (351)
Q Consensus 249 ~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~ 299 (351)
+|+++++|+|+|++++||+||+|+++..|+||+||+||.+. |.++.++..
T Consensus 429 aT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~ 478 (773)
T PRK13766 429 STSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAK 478 (773)
T ss_pred ECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeC
Confidence 99999999999999999999999999999999999999866 666766654
No 67
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=9.5e-33 Score=279.21 Aligned_cols=296 Identities=18% Similarity=0.190 Sum_probs=215.3
Q ss_pred CcccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC--CceEEEEECCcchHHHH---HHHhC
Q psy13286 1 MVQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL--NVKVMVTTGGTNLRDDI---MRIYQ 73 (351)
Q Consensus 1 ~~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~---~~~~~ 73 (351)
+++|||||| ++.++..+... ..++++|||+||++|+.|+.+.+++++... ++++..++|+.+..++. ..+.+
T Consensus 98 li~APTGsGKTl~~~~~al~~~-~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~ 176 (1638)
T PRK14701 98 SIVAPTGMGKSTFGAFIALFLA-LKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIEN 176 (1638)
T ss_pred EEEEcCCCCHHHHHHHHHHHHH-hcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhc
Confidence 478999997 21111122222 234799999999999999999999998875 46778888888765542 33444
Q ss_pred -CCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccC-----------cchHHHHHH----HHH-------------
Q psy13286 74 -KVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLS-----------QDFKGMLDH----VIS------------- 124 (351)
Q Consensus 74 -~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~-----------~~~~~~~~~----~~~------------- 124 (351)
.++|+|+||+.+.+.+.... ..+++++|+||||++++ .+|.+.+.. ++.
T Consensus 177 g~~dILV~TPgrL~~~~~~l~--~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~ 254 (1638)
T PRK14701 177 GDFDILVTTAQFLARNFPEMK--HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEK 254 (1638)
T ss_pred CCCCEEEECCchhHHhHHHHh--hCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhh
Confidence 48999999999987665321 26799999999999976 367766643 221
Q ss_pred ---------hCCCCCc-EEEEEeeCcchHHHHHHHhcCCCeEEeecc-ccccCCceEEEEEcCcccHHHHHHHHHhhCCC
Q psy13286 125 ---------ILPHERQ-ILLYSATFPLTVKNFMEKHLKDPYEINLME-ELTLKGVTQYYAFVQERQKVHCLNTLFSKLQI 193 (351)
Q Consensus 125 ---------~~~~~~~-~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 193 (351)
.+++..| ++.+|||.++.. .....+.++..+.+.. .....++.+.+.......+ ..+..+++.. +
T Consensus 255 ~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g 330 (1638)
T PRK14701 255 REILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL-G 330 (1638)
T ss_pred hhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-C
Confidence 2344555 677999998641 1112334555554432 2344567777776655544 5677777766 4
Q ss_pred CcEEEEeCchHH---HHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC----cCCCCCCCCC-CCEE
Q psy13286 194 NQSIIFCNSTQR---VELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD----LFTRGIDVQA-VNVV 265 (351)
Q Consensus 194 ~~~lIf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~----~~~~G~di~~-~~~V 265 (351)
.++||||++++. |+.+++.|+..|+.+..+|++ |...++.|++|+.+|||||+ .+.+|+|+|+ +++|
T Consensus 331 ~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryv 405 (1638)
T PRK14701 331 KGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFA 405 (1638)
T ss_pred CCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEE
Confidence 689999999875 589999999999999999995 88999999999999999994 7889999998 9999
Q ss_pred EEecCCC---ChhhHhhhc-------------cccccCCCceeEEEEeccchHHHHHHH
Q psy13286 266 INFDFPK---MAETYLHRI-------------GRSGRYGHLGIAINLITYEDRYALHRI 308 (351)
Q Consensus 266 i~~~~p~---s~~~~~q~~-------------GR~gR~~~~~~~i~~~~~~~~~~~~~l 308 (351)
||||+|. +.+.|.|.. ||+||.|..+.++..+...+...++.+
T Consensus 406 i~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 406 VFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred EEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHH
Confidence 9999999 777666655 999999988777655555554444433
No 68
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.3e-32 Score=254.14 Aligned_cols=297 Identities=14% Similarity=0.140 Sum_probs=217.8
Q ss_pred CcccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEE
Q psy13286 1 MVQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78 (351)
Q Consensus 1 ~~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Il 78 (351)
+.+|+||+| +..++..+..+.. +..+.|++||+.||.|.++++.++.+.+|+++..+.|+.+...... ...++|+
T Consensus 73 Iaem~TGeGKTLva~lpa~l~aL~-G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~--~y~~dIv 149 (745)
T TIGR00963 73 IAEMKTGEGKTLTATLPAYLNALT-GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERRE--AYACDIT 149 (745)
T ss_pred eeeecCCCccHHHHHHHHHHHHHh-CCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHH--hcCCCEE
Confidence 357899996 3333333223323 3579999999999999999999999999999999999987654433 2358999
Q ss_pred EEccHHH-HHHHhccC------cCCCCccEEEEcccccccCcc-h---------------HHHHHHHHHhCCC-------
Q psy13286 79 IATPGRI-LDLMDKQV------ANMDHCKILVLDEADKLLSQD-F---------------KGMLDHVISILPH------- 128 (351)
Q Consensus 79 v~Tp~~l-~~~l~~~~------~~~~~~~lvViDE~h~~~~~~-~---------------~~~~~~~~~~~~~------- 128 (351)
++||.+| .++++.+. ..+..++++|+||+|.++-+. . ......+...+..
T Consensus 150 yGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~d 229 (745)
T TIGR00963 150 YGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVD 229 (745)
T ss_pred EECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEe
Confidence 9999999 88888763 357899999999999764310 0 0000011111100
Q ss_pred --------------------------------------------------------------------------------
Q psy13286 129 -------------------------------------------------------------------------------- 128 (351)
Q Consensus 129 -------------------------------------------------------------------------------- 128 (351)
T Consensus 230 e~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GL 309 (745)
T TIGR00963 230 EKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGL 309 (745)
T ss_pred cCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHH
Confidence
Q ss_pred ------------------------------CCcEEEEEeeCcchHHHHHHHhcCCCeEEeeccccccCCceEEEEEcCcc
Q psy13286 129 ------------------------------ERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQER 178 (351)
Q Consensus 129 ------------------------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (351)
-..+.+||+|......++.+-|..+...+............. ..+....
T Consensus 310 hQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~R~d~~d-~i~~t~~ 388 (745)
T TIGR00963 310 HQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKDLSD-LVYKTEE 388 (745)
T ss_pred HHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeCCCCCeeeeeCCC-eEEcCHH
Confidence 124556666665555555555544433322222211111111 2233345
Q ss_pred cHHHHHHHHHh--hCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCC
Q psy13286 179 QKVHCLNTLFS--KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRG 256 (351)
Q Consensus 179 ~k~~~l~~~l~--~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G 256 (351)
+|...+...+. ...+.++||||++.+.++.+++.|.+.+++...+|+. ..+|+..+..|+.+...|+|||+++++|
T Consensus 389 ~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRG 466 (745)
T TIGR00963 389 EKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRG 466 (745)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCC
Confidence 67777766552 3457899999999999999999999999999999998 7789999999999999999999999999
Q ss_pred CCCCC-------CCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHH
Q psy13286 257 IDVQA-------VNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRY 303 (351)
Q Consensus 257 ~di~~-------~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~ 303 (351)
+||+. ..|||+++.|.|...|.|+.||+||.|.+|.+..|++.+|.-
T Consensus 467 tDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 467 TDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNL 520 (745)
T ss_pred cCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHH
Confidence 99997 459999999999999999999999999999999999988643
No 69
>KOG0351|consensus
Probab=100.00 E-value=2.7e-32 Score=261.28 Aligned_cols=305 Identities=19% Similarity=0.241 Sum_probs=234.1
Q ss_pred CcccccCCcchhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHHhC---C
Q psy13286 1 MVQARQEPTQFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRIYQ---K 74 (351)
Q Consensus 1 ~~~a~tgs~~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~---~ 74 (351)
+|.+|||.|-.-- .-+|+.-.++.+|+|.|..+|++.+...+ ...+++...++++....+. ++.+.+ .
T Consensus 283 fvlmpTG~GKSLC--YQlPA~l~~gitvVISPL~SLm~DQv~~L----~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ 356 (941)
T KOG0351|consen 283 FVLMPTGGGKSLC--YQLPALLLGGVTVVISPLISLMQDQVTHL----SKKGIPACFLSSIQTAAERLAILQKLANGNPI 356 (941)
T ss_pred EEEeecCCceeeE--eeccccccCCceEEeccHHHHHHHHHHhh----hhcCcceeeccccccHHHHHHHHHHHhCCCCe
Confidence 3678999972111 12233333469999999999998877665 3347888888888776533 233333 4
Q ss_pred CcEEEEccHHHHH--HHhccCcCCCC---ccEEEEcccccccCc--chHHHHHHHH---HhCCCCCcEEEEEeeCcchHH
Q psy13286 75 VHLIIATPGRILD--LMDKQVANMDH---CKILVLDEADKLLSQ--DFKGMLDHVI---SILPHERQILLYSATFPLTVK 144 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~--~l~~~~~~~~~---~~lvViDE~h~~~~~--~~~~~~~~~~---~~~~~~~~~i~~SaT~~~~~~ 144 (351)
.+|+..|||++.. .+......+.. +.++||||||+...+ +|++.++.+. ..++ ...++++|||.+..+.
T Consensus 357 ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~ 435 (941)
T KOG0351|consen 357 IKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFP-GVPFIALTATATERVR 435 (941)
T ss_pred EEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHH
Confidence 7899999999944 22222223334 789999999998875 4777766543 3333 3679999999999988
Q ss_pred HHHHHhcCCCeEEeeccccccCCceEEEEEcC-cccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEe
Q psy13286 145 NFMEKHLKDPYEINLMEELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYI 223 (351)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~ 223 (351)
..+-..++-.....+...+..++....+..-. ...-...+.......+...+||||.++.+++.++..|++.++.+..|
T Consensus 436 ~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~Y 515 (941)
T KOG0351|consen 436 EDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFY 515 (941)
T ss_pred HHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhh
Confidence 87776665444444555666666544444433 22334444555556678899999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHH
Q psy13286 224 HARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRY 303 (351)
Q Consensus 224 ~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~ 303 (351)
|++|+..+|..+.++|.+++++|+|||=++++|+|.|+|+.||||++|.|.+.|.|.+|||||.|....|++|++..|..
T Consensus 516 HAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~ 595 (941)
T KOG0351|consen 516 HAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADIS 595 (941)
T ss_pred hcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHHHHHHHh
Q psy13286 304 ALHRIEKEL 312 (351)
Q Consensus 304 ~~~~l~~~l 312 (351)
.++.+...-
T Consensus 596 ~l~~ll~s~ 604 (941)
T KOG0351|consen 596 ELRRLLTSG 604 (941)
T ss_pred HHHHHHHcc
Confidence 777766543
No 70
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.9e-32 Score=251.42 Aligned_cols=279 Identities=15% Similarity=0.129 Sum_probs=192.2
Q ss_pred CcccccCCc--c--hhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCc
Q psy13286 1 MVQARQEPT--Q--FLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVH 76 (351)
Q Consensus 1 ~~~a~tgs~--~--l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 76 (351)
+|++|||+| + +.++..+ ++++|||||+.+|+.||.+.+.++.......+..++|+.+.. .....+
T Consensus 277 IIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-----~~~~~~ 345 (732)
T TIGR00603 277 IIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER-----FHGEAG 345 (732)
T ss_pred EEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc-----cccCCc
Confidence 478999997 2 2233322 368999999999999999999998755556677777765421 123478
Q ss_pred EEEEccHHHHHHHhc--------cCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchH--HHH
Q psy13286 77 LIIATPGRILDLMDK--------QVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTV--KNF 146 (351)
Q Consensus 77 Ilv~Tp~~l~~~l~~--------~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~--~~~ 146 (351)
|+|+|++++.....+ ..+....++++|+||+|++....|.. +...+. ....+++|||+...- ...
T Consensus 346 VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~----il~~l~-a~~RLGLTATP~ReD~~~~~ 420 (732)
T TIGR00603 346 VVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRR----VLTIVQ-AHCKLGLTATLVREDDKITD 420 (732)
T ss_pred EEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHH----HHHhcC-cCcEEEEeecCcccCCchhh
Confidence 999999988543221 11223578999999999987655554 333332 334799999985321 111
Q ss_pred HHHhcCCCeEEeec--cccccC---CceEE-----------------------EEEcCcccHHHHHHHHHhhC--CCCcE
Q psy13286 147 MEKHLKDPYEINLM--EELTLK---GVTQY-----------------------YAFVQERQKVHCLNTLFSKL--QINQS 196 (351)
Q Consensus 147 ~~~~~~~~~~~~~~--~~~~~~---~~~~~-----------------------~~~~~~~~k~~~l~~~l~~~--~~~~~ 196 (351)
+..+++ |...... +..... +.... ........|...+..+++.+ .+.++
T Consensus 421 L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~ki 499 (732)
T TIGR00603 421 LNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKI 499 (732)
T ss_pred hhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeE
Confidence 222222 2211111 000000 00000 00111224566666677654 67899
Q ss_pred EEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcC-CccEEEEeCcCCCCCCCCCCCEEEEecCC-CCh
Q psy13286 197 IIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG-LCRNLVCSDLFTRGIDVQAVNVVINFDFP-KMA 274 (351)
Q Consensus 197 lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~ilv~T~~~~~G~di~~~~~Vi~~~~p-~s~ 274 (351)
||||.+...+..+++.|. +..+||+++..+|.++++.|++| ..++||+|+++.+|+|+|++++||+++.| .|.
T Consensus 500 LVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~ 574 (732)
T TIGR00603 500 IVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSR 574 (732)
T ss_pred EEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCH
Confidence 999999999999998872 45789999999999999999875 78999999999999999999999999987 599
Q ss_pred hhHhhhccccccCCCce-------eEEEEeccch
Q psy13286 275 ETYLHRIGRSGRYGHLG-------IAINLITYED 301 (351)
Q Consensus 275 ~~~~q~~GR~gR~~~~~-------~~i~~~~~~~ 301 (351)
..|+||+||++|.+..| ..+.+++.+.
T Consensus 575 ~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 575 RQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred HHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 99999999999986554 4488888763
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=5.2e-31 Score=234.29 Aligned_cols=271 Identities=16% Similarity=0.136 Sum_probs=182.0
Q ss_pred CcccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC----CceEEEEECCcchHH-HHH----
Q psy13286 1 MVQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL----NVKVMVTTGGTNLRD-DIM---- 69 (351)
Q Consensus 1 ~~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~----~~~v~~~~~~~~~~~-~~~---- 69 (351)
++.|||||| ..+++..+. .+.++++++|+++|++|+++.++++.... +..+..+.|.+.... ...
T Consensus 18 ~i~apTGsGKT~~~~~~~l~----~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~ 93 (357)
T TIGR03158 18 FNTAPTGAGKTLAWLTPLLH----GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKV 93 (357)
T ss_pred EEECCCCCCHHHHHHHHHHH----cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhc
Confidence 368999997 333332221 23578999999999999999999987543 466766776532210 000
Q ss_pred ---------------HHhCCCcEEEEccHHHHHHHhccCc--------CCCCccEEEEcccccccCcchHH-----HHHH
Q psy13286 70 ---------------RIYQKVHLIIATPGRILDLMDKQVA--------NMDHCKILVLDEADKLLSQDFKG-----MLDH 121 (351)
Q Consensus 70 ---------------~~~~~~~Ilv~Tp~~l~~~l~~~~~--------~~~~~~lvViDE~h~~~~~~~~~-----~~~~ 121 (351)
...+.+.|+++||+.+..++++... .+..++++|+||+|.+....... ....
T Consensus 94 ~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~ 173 (357)
T TIGR03158 94 GSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQ 173 (357)
T ss_pred ccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHH
Confidence 1123688999999999776654211 14789999999999876533211 1222
Q ss_pred HHHhCCCCCcEEEEEeeCcchHHHHHHHh--cCCCeEEeecc------------c-------cccCCceEEEEEcCcccH
Q psy13286 122 VISILPHERQILLYSATFPLTVKNFMEKH--LKDPYEINLME------------E-------LTLKGVTQYYAFVQERQK 180 (351)
Q Consensus 122 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~--~~~~~~~~~~~------------~-------~~~~~~~~~~~~~~~~~k 180 (351)
+........+++++|||+++.....+... ...+....... . ...+.+.+.+.. ....+
T Consensus 174 ~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 252 (357)
T TIGR03158 174 LIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFK 252 (357)
T ss_pred HHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchh
Confidence 22333335789999999998877777654 33322111111 0 011244444444 22233
Q ss_pred HHHHHH-------HHhhCCCCcEEEEeCchHHHHHHHHHHHhcC--CeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 181 VHCLNT-------LFSKLQINQSIIFCNSTQRVELLAKKITELG--YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 181 ~~~l~~-------~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
...+.. .++..+++++||||+++..++.+++.|+..+ ..+..+||.+++.+|.+. ++..+||||+
T Consensus 253 ~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTd 326 (357)
T TIGR03158 253 EEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTS 326 (357)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEec
Confidence 332322 2223456799999999999999999999864 578889999999988654 4789999999
Q ss_pred cCCCCCCCCCCCEEEEecCCCChhhHhhhccccc
Q psy13286 252 LFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSG 285 (351)
Q Consensus 252 ~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~g 285 (351)
++++|+|+|.. +|| ++ |.+.++|+||+||+|
T Consensus 327 v~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 327 TVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99999999986 565 45 889999999999986
No 72
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.2e-31 Score=255.45 Aligned_cols=309 Identities=22% Similarity=0.313 Sum_probs=240.4
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCC--ceEEEEECCcchHHHHHHHhC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLN--VKVMVTTGGTNLRDDIMRIYQ 73 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~ 73 (351)
+|.++|||| ++|+++.+...... ++|+|.||++|++.|.+.++++....+ +.+..++|+++..+....+.+
T Consensus 89 vVtTgTgSGKTe~FllPIld~~l~~~~a--~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~ 166 (851)
T COG1205 89 VVTTGTGSGKTESFLLPILDHLLRDPSA--RALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRN 166 (851)
T ss_pred EEECCCCCchhHHHHHHHHHHHhhCcCc--cEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhC
Confidence 578999996 99999999888776 999999999999999999999999988 888889999987777677788
Q ss_pred CCcEEEEccHHHHH-HHhccC---cCCCCccEEEEcccccccCcchHHHHHHH-------HHhCCCCCcEEEEEeeCcch
Q psy13286 74 KVHLIIATPGRILD-LMDKQV---ANMDHCKILVLDEADKLLSQDFKGMLDHV-------ISILPHERQILLYSATFPLT 142 (351)
Q Consensus 74 ~~~Ilv~Tp~~l~~-~l~~~~---~~~~~~~lvViDE~h~~~~~~~~~~~~~~-------~~~~~~~~~~i~~SaT~~~~ 142 (351)
.++|+++||++|.. ++.++. ..++++++||+||+|..-. -|+..+..+ ....+.++|++..|||+...
T Consensus 167 pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG-v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np 245 (851)
T COG1205 167 PPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG-VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP 245 (851)
T ss_pred CCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc-cchhHHHHHHHHHHHHHhccCCCceEEEEeccccCh
Confidence 99999999999977 444322 2367899999999995433 244444333 33345688999999998765
Q ss_pred HHHHHHHhcCCCeEEeeccccccCCceEEEEEcC---------cccHHHHHHHHHhhC--CCCcEEEEeCchHHHHHHH-
Q psy13286 143 VKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQ---------ERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLA- 210 (351)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~k~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~- 210 (351)
.++.+.+........+.+...+.....+....+ ...+...+..+.... .+-++|+|+.++..++.++
T Consensus 246 -~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~ 324 (851)
T COG1205 246 -GEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYL 324 (851)
T ss_pred -HHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhh
Confidence 445555655555554555555555555555554 224444444444432 4678999999999999997
Q ss_pred ---HHHHhcC----CeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCC-ChhhHhhhcc
Q psy13286 211 ---KKITELG----YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPK-MAETYLHRIG 282 (351)
Q Consensus 211 ---~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~-s~~~~~q~~G 282 (351)
..+...+ ..+..+++++...+|.++...|++|+..++++|++++-|+|+.+++.||..+.|. +..+++||.|
T Consensus 325 ~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~G 404 (851)
T COG1205 325 SPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAG 404 (851)
T ss_pred chhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhh
Confidence 4444445 5688999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred ccccCCCceeEEEEeccc--hHHHHHHHHHHhc
Q psy13286 283 RSGRYGHLGIAINLITYE--DRYALHRIEKELG 313 (351)
Q Consensus 283 R~gR~~~~~~~i~~~~~~--~~~~~~~l~~~l~ 313 (351)
|+||.++.+..+.+...+ |......-+..++
T Consensus 405 RaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 405 RAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred hccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999877777766643 4555555555555
No 73
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2.4e-31 Score=264.06 Aligned_cols=256 Identities=19% Similarity=0.270 Sum_probs=186.0
Q ss_pred CcccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEE---EEECCcchHHH---HHH
Q psy13286 1 MVQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVM---VTTGGTNLRDD---IMR 70 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~---~~~~~~~~~~~---~~~ 70 (351)
+++|||||| .+|++..+. ..+++++||+||++|+.|+.+.+++++...++.+. .++|+.+..++ +..
T Consensus 97 vi~ApTGsGKT~f~l~~~~~l~---~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~ 173 (1171)
T TIGR01054 97 AIIAPTGVGKTTFGLAMSLFLA---KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMER 173 (1171)
T ss_pred EEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHH
Confidence 468999997 344433332 22579999999999999999999999988776543 46787765443 233
Q ss_pred HhC-CCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccC-----------cchHHH-HHHH---------------
Q psy13286 71 IYQ-KVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLS-----------QDFKGM-LDHV--------------- 122 (351)
Q Consensus 71 ~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~-----------~~~~~~-~~~~--------------- 122 (351)
+.+ +++|+|+||++|.+.+..-. . +++++|+||||++++ .+|.+. +..+
T Consensus 174 l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~ 250 (1171)
T TIGR01054 174 IENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALH 250 (1171)
T ss_pred HhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHH
Confidence 333 59999999999988766421 2 899999999999987 456542 3332
Q ss_pred -------HHhCCCCCc--EEEEEee-CcchHHHHHHHhcCCCeEEeecc-ccccCCceEEEEEcCcccHHHHHHHHHhhC
Q psy13286 123 -------ISILPHERQ--ILLYSAT-FPLTVKNFMEKHLKDPYEINLME-ELTLKGVTQYYAFVQERQKVHCLNTLFSKL 191 (351)
Q Consensus 123 -------~~~~~~~~~--~i~~SaT-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 191 (351)
....++..| ++++||| .+...... ++.+...+.+.. .....++.+.+..... +...+..+++..
T Consensus 251 ~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~---l~r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l 325 (1171)
T TIGR01054 251 AKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAK---LFRELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL 325 (1171)
T ss_pred HHHHHHHHHhhhhccCcEEEEEeCCCCccccHHH---HcccccceEecCccccccceEEEEEeccc--HHHHHHHHHHHc
Confidence 223344444 6778999 45444322 233333344432 2234556666654443 245566777665
Q ss_pred CCCcEEEEeCch---HHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEe----CcCCCCCCCCC-CC
Q psy13286 192 QINQSIIFCNST---QRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS----DLFTRGIDVQA-VN 263 (351)
Q Consensus 192 ~~~~~lIf~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T----~~~~~G~di~~-~~ 263 (351)
. .++||||+++ +.|+.+++.|+..|+.+..+||+++. ..++.|++|+.+||||| +++++|+|+|+ ++
T Consensus 326 ~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~ 400 (1171)
T TIGR01054 326 G-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVR 400 (1171)
T ss_pred C-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCcccc
Confidence 4 6799999999 99999999999999999999999973 67999999999999995 89999999999 89
Q ss_pred EEEEecCCC
Q psy13286 264 VVINFDFPK 272 (351)
Q Consensus 264 ~Vi~~~~p~ 272 (351)
+||+||+|.
T Consensus 401 ~vI~~~~P~ 409 (1171)
T TIGR01054 401 YAVFLGVPK 409 (1171)
T ss_pred EEEEECCCC
Confidence 999998873
No 74
>KOG0352|consensus
Probab=99.98 E-value=5e-32 Score=230.30 Aligned_cols=294 Identities=18% Similarity=0.199 Sum_probs=213.6
Q ss_pred cccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHH--
Q psy13286 2 VQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRI-- 71 (351)
Q Consensus 2 ~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~-- 71 (351)
|.+|||+| .||.|-. ++.++++.|..+|+.++.+.+.++ .+++..+.+..+..+. +..+
T Consensus 41 VsMPTGaGKSLCyQLPaL~~-------~gITIV~SPLiALIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ 109 (641)
T KOG0352|consen 41 VSMPTGAGKSLCYQLPALVH-------GGITIVISPLIALIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAK 109 (641)
T ss_pred EeccCCCchhhhhhchHHHh-------CCeEEEehHHHHHHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHh
Confidence 68999997 6665543 469999999999999999998776 4444444444332221 2222
Q ss_pred -hCCCcEEEEccHHHHHHH----hccCcCCCCccEEEEcccccccCc--chHHHHHHH---HHhCCCCCcEEEEEeeCcc
Q psy13286 72 -YQKVHLIIATPGRILDLM----DKQVANMDHCKILVLDEADKLLSQ--DFKGMLDHV---ISILPHERQILLYSATFPL 141 (351)
Q Consensus 72 -~~~~~Ilv~Tp~~l~~~l----~~~~~~~~~~~lvViDE~h~~~~~--~~~~~~~~~---~~~~~~~~~~i~~SaT~~~ 141 (351)
..+..++..|||...... -+....-..+.++|+||||+...+ +|++.+..+ .+.+ ....-+.+|||.++
T Consensus 110 ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~ 188 (641)
T KOG0352|consen 110 EKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVC-PGVPWVALTATANA 188 (641)
T ss_pred cCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhC-CCCceEEeecccCh
Confidence 225779999999873321 122223456789999999998875 477665544 3334 34568899999998
Q ss_pred hHHHHH--HHhcCCCeEEeeccccccCCceEEEEEcCcc---cHHHHHHHHHhh----------C---CCCcEEEEeCch
Q psy13286 142 TVKNFM--EKHLKDPYEINLMEELTLKGVTQYYAFVQER---QKVHCLNTLFSK----------L---QINQSIIFCNST 203 (351)
Q Consensus 142 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~----------~---~~~~~lIf~~~~ 203 (351)
.+.+.+ ...+.+|+.+.-...+. -+.+|...-.+ +-+..|.++... . -.+..||||.++
T Consensus 189 ~VqEDi~~qL~L~~PVAiFkTP~FR---~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR 265 (641)
T KOG0352|consen 189 KVQEDIAFQLKLRNPVAIFKTPTFR---DNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTR 265 (641)
T ss_pred hHHHHHHHHHhhcCcHHhccCcchh---hhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccH
Confidence 877654 34455666543322211 11112111111 112222222211 1 136789999999
Q ss_pred HHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccc
Q psy13286 204 QRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGR 283 (351)
Q Consensus 204 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR 283 (351)
++++.++-.|...|+++..+|.++...+|.++.++|-+++..|+++|..+++|+|-|+++.|||.++|.+..-|.|..||
T Consensus 266 ~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGR 345 (641)
T KOG0352|consen 266 NECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGR 345 (641)
T ss_pred HHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeEEEEeccchHHHHHHHHH
Q psy13286 284 SGRYGHLGIAINLITYEDRYALHRIEK 310 (351)
Q Consensus 284 ~gR~~~~~~~i~~~~~~~~~~~~~l~~ 310 (351)
+||.|...+|-++++..|...+..+.+
T Consensus 346 AGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 346 AGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred cccCCCccceeeeecccchHHHHHHHh
Confidence 999999999999999988777665544
No 75
>KOG0354|consensus
Probab=99.98 E-value=4.7e-31 Score=242.52 Aligned_cols=294 Identities=19% Similarity=0.273 Sum_probs=201.1
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
||.+|||+| +..++.++..-.. +++++++|++.|+.|+...+..++.. ..+....|+.........+....
T Consensus 80 ii~lPTG~GKTfIAa~Vm~nh~rw~p~--~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~ 155 (746)
T KOG0354|consen 80 IIALPTGSGKTFIAAVIMKNHFEWRPK--GKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASK 155 (746)
T ss_pred EEEeecCCCccchHHHHHHHHHhcCCc--ceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhccc
Confidence 588999997 3333344433333 79999999999999999777666543 55666666655555555667789
Q ss_pred cEEEEccHHHHHHHhccCcC-CCCccEEEEcccccccCcc-hHHHHHHHHHhCCCCCcEEEEEeeCcchHHHH---HHHh
Q psy13286 76 HLIIATPGRILDLMDKQVAN-MDHCKILVLDEADKLLSQD-FKGMLDHVISILPHERQILLYSATFPLTVKNF---MEKH 150 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~-~~~~~lvViDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~---~~~~ 150 (351)
+|+|+||+.+.+.|.++..+ ++.|.++||||||+-.... +...+...+..-....|++++|||+....... +...
T Consensus 156 ~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L 235 (746)
T KOG0354|consen 156 RVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNL 235 (746)
T ss_pred ceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhh
Confidence 99999999998888776654 4899999999999876644 55556566555555569999999975432211 1111
Q ss_pred cCC----------------------CeEE-------------------------eec----------------cccccCC
Q psy13286 151 LKD----------------------PYEI-------------------------NLM----------------EELTLKG 167 (351)
Q Consensus 151 ~~~----------------------~~~~-------------------------~~~----------------~~~~~~~ 167 (351)
+.. |+.+ .+. .....++
T Consensus 236 ~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 315 (746)
T KOG0354|consen 236 CASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPN 315 (746)
T ss_pred heecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccC
Confidence 100 0000 000 0000000
Q ss_pred ce--EE--------------------EE------Ec--------------------------------------C--ccc
Q psy13286 168 VT--QY--------------------YA------FV--------------------------------------Q--ERQ 179 (351)
Q Consensus 168 ~~--~~--------------------~~------~~--------------------------------------~--~~~ 179 (351)
.. +. .. .. . ...
T Consensus 316 ~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~np 395 (746)
T KOG0354|consen 316 GPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENP 395 (746)
T ss_pred CCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccCh
Confidence 00 00 00 00 0 012
Q ss_pred HHHHHHHHH----hhCCCCcEEEEeCchHHHHHHHHHHHhc---CCeEEEec--------cCCCHHHHHHHHHHhhcCCc
Q psy13286 180 KVHCLNTLF----SKLQINQSIIFCNSTQRVELLAKKITEL---GYCCYYIH--------ARMAQAHRNRVFHDFRSGLC 244 (351)
Q Consensus 180 k~~~l~~~l----~~~~~~~~lIf~~~~~~~~~l~~~L~~~---~~~~~~~~--------~~~~~~~r~~~~~~f~~g~~ 244 (351)
|+..+...+ ...+..++||||.+++.|..+.++|... ++...++- .+|++.++.+++++|++|+.
T Consensus 396 kle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~ 475 (746)
T KOG0354|consen 396 KLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEI 475 (746)
T ss_pred hHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCc
Confidence 222222222 2335679999999999999999999842 33443433 37999999999999999999
Q ss_pred cEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccc
Q psy13286 245 RNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYE 300 (351)
Q Consensus 245 ~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~ 300 (351)
++||||++.++|+||+.|+.||.||...++-.++||.|| ||. ..|.++++....
T Consensus 476 NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~ 529 (746)
T KOG0354|consen 476 NVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGS 529 (746)
T ss_pred cEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcch
Confidence 999999999999999999999999999999999999999 998 456777666654
No 76
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.98 E-value=2.1e-30 Score=234.88 Aligned_cols=287 Identities=16% Similarity=0.234 Sum_probs=222.1
Q ss_pred CcccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHHhC-C
Q psy13286 1 MVQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRIYQ-K 74 (351)
Q Consensus 1 ~~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~-~ 74 (351)
|||.--||| ++++++++..-.. |.++.+++||.-||.|.++.+.+++...+++|..++|..+-... ...+.+ .
T Consensus 287 LlQGDVGSGKTvVA~laml~ai~~-G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~ 365 (677)
T COG1200 287 LLQGDVGSGKTVVALLAMLAAIEA-GYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGE 365 (677)
T ss_pred HhccCcCCCHHHHHHHHHHHHHHc-CCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCC
Confidence 567777775 7777777554444 48999999999999999999999999999999999999875443 334444 4
Q ss_pred CcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCC-CCcEEEEEeeCcchHHHHHHHhcCC
Q psy13286 75 VHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPH-ERQILLYSATFPLTVKNFMEKHLKD 153 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~ 153 (351)
.+|+|+|..-+.+-. .+.++.++|+||-|+ |+-.-...+..-.. .+.++.|||||-++...+... .+
T Consensus 366 ~~ivVGTHALiQd~V-----~F~~LgLVIiDEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~f--gD 433 (677)
T COG1200 366 IDIVVGTHALIQDKV-----EFHNLGLVIIDEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAF--GD 433 (677)
T ss_pred CCEEEEcchhhhcce-----eecceeEEEEecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHh--cc
Confidence 999999998886644 488999999999998 56555555555555 688999999988776554433 22
Q ss_pred CeEEeeccccccCCceEEEEEcCcccHHHHHHHHHhhC-CCCcEEEEeCchH--------HHHHHHHHHHhc--CCeEEE
Q psy13286 154 PYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKL-QINQSIIFCNSTQ--------RVELLAKKITEL--GYCCYY 222 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lIf~~~~~--------~~~~l~~~L~~~--~~~~~~ 222 (351)
..+...++.++...+..-.+.........+..+..+. ++.++.|.|+-.+ .|..+++.|+.. +..+..
T Consensus 434 -ldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL 512 (677)
T COG1200 434 -LDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGL 512 (677)
T ss_pred -ccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEE
Confidence 2344555666555555555555555555555555443 4678899997654 455667777744 567999
Q ss_pred eccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCC-hhhHhhhccccccCCCceeEEEEeccch
Q psy13286 223 IHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKM-AETYLHRIGRSGRYGHLGIAINLITYED 301 (351)
Q Consensus 223 ~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s-~~~~~q~~GR~gR~~~~~~~i~~~~~~~ 301 (351)
+||.|+.++++++++.|++|+.+|||||.+++.|+|+|+++++++.+..+- .++.-|-.||+||.+..++|+.++....
T Consensus 513 ~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 513 VHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999998765 4566677799999999999999998875
No 77
>KOG0952|consensus
Probab=99.98 E-value=4.2e-31 Score=246.25 Aligned_cols=302 Identities=21% Similarity=0.264 Sum_probs=215.7
Q ss_pred CcccccCCc-----chhhhcccCc------CCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTP------AKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM 69 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 69 (351)
||+|||||| .|.+|..+.. ......+++||+|+++||.++++.+.+-+...|++|..++|+....+.-
T Consensus 130 LIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te- 208 (1230)
T KOG0952|consen 130 LICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE- 208 (1230)
T ss_pred EEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH-
Confidence 689999996 5555555543 1223589999999999999999988888888899999999998754442
Q ss_pred HHhCCCcEEEEccHHHHHHHhccC---cCCCCccEEEEcccccccCcchHHHHHHHHHhC-------CCCCcEEEEEeeC
Q psy13286 70 RIYQKVHLIIATPGRILDLMDKQV---ANMDHCKILVLDEADKLLSQDFKGMLDHVISIL-------PHERQILLYSATF 139 (351)
Q Consensus 70 ~~~~~~~Ilv~Tp~~l~~~l~~~~---~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~-------~~~~~~i~~SaT~ 139 (351)
...++|+|+|||++.-.-+++. ..++.+.+||+||+|.+ .+..++.++.+.+.. ....+++++|||+
T Consensus 209 --i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlL-hd~RGpvlEtiVaRtlr~vessqs~IRivgLSATl 285 (1230)
T KOG0952|consen 209 --IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLL-HDDRGPVLETIVARTLRLVESSQSMIRIVGLSATL 285 (1230)
T ss_pred --HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhh-cCcccchHHHHHHHHHHHHHhhhhheEEEEeeccC
Confidence 3459999999999943333222 13678899999999955 554667666655443 4567899999999
Q ss_pred cchHHHHHHHhcC-C--CeEEeeccccccCCceEEEEEcCcc---cHHHHHH-----HHHh-hCCCCcEEEEeCchHHHH
Q psy13286 140 PLTVKNFMEKHLK-D--PYEINLMEELTLKGVTQYYAFVQER---QKVHCLN-----TLFS-KLQINQSIIFCNSTQRVE 207 (351)
Q Consensus 140 ~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~-----~~l~-~~~~~~~lIf~~~~~~~~ 207 (351)
|.... ...+++ + .-...+.....+....+.+...... ...+.+. .+.. ..++.+++|||.+++.+.
T Consensus 286 PN~eD--vA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti 363 (1230)
T KOG0952|consen 286 PNYED--VARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETI 363 (1230)
T ss_pred CCHHH--HHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHH
Confidence 97543 222333 2 1233444556666666666555443 2222222 1222 124678999999999999
Q ss_pred HHHHHHHhc-----------------------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCE
Q psy13286 208 LLAKKITEL-----------------------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNV 264 (351)
Q Consensus 208 ~l~~~L~~~-----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~ 264 (351)
+.|+.|... ..+..++|+||...+|..+.+.|..|.++||+||..+..|+|+|+-.+
T Consensus 364 ~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aV 443 (1230)
T KOG0952|consen 364 RTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAV 443 (1230)
T ss_pred HHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEE
Confidence 999998652 135678999999999999999999999999999999999999997544
Q ss_pred EE----EecCCC------ChhhHhhhccccccC--CCceeEEEEeccchHHHHHHH
Q psy13286 265 VI----NFDFPK------MAETYLHRIGRSGRY--GHLGIAINLITYEDRYALHRI 308 (351)
Q Consensus 265 Vi----~~~~p~------s~~~~~q~~GR~gR~--~~~~~~i~~~~~~~~~~~~~l 308 (351)
+| .||... ....-+|.+|||||. +..|.++++.+.+-..++..+
T Consensus 444 iIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sL 499 (1230)
T KOG0952|consen 444 IIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESL 499 (1230)
T ss_pred EecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHH
Confidence 44 233332 345779999999996 567888888776654444433
No 78
>KOG0349|consensus
Probab=99.97 E-value=1.1e-29 Score=216.49 Aligned_cols=305 Identities=29% Similarity=0.513 Sum_probs=242.9
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhC---CceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhccCcCCCCcc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHL---NVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQVANMDHCK 100 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 100 (351)
++.++|+-|+++|++|..+.+++|-.+. .++...+.|+...+.+..++..+.+|+|+||.++.+.+..+...+.+..
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 4899999999999999999888887665 3566788898888999999999999999999999999999999999999
Q ss_pred EEEEcccccccCcchHHHHHHHHHhCC------CCCcEEEEEeeCcc-hHHHHHHHhcCCCeEEeeccccccC-CceEEE
Q psy13286 101 ILVLDEADKLLSQDFKGMLDHVISILP------HERQILLYSATFPL-TVKNFMEKHLKDPYEINLMEELTLK-GVTQYY 172 (351)
Q Consensus 101 lvViDE~h~~~~~~~~~~~~~~~~~~~------~~~~~i~~SaT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 172 (351)
++|.||++.++..++...+..+...++ ...|.+++|||+.. ++....++.+.-|..+++..+...+ .+.+..
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 999999999999888888887776665 35689999999753 2333445555556666665332222 222222
Q ss_pred EEcCc----------------------------------ccHHHHH-----HHHHhhCCCCcEEEEeCchHHHHHHHHHH
Q psy13286 173 AFVQE----------------------------------RQKVHCL-----NTLFSKLQINQSIIFCNSTQRVELLAKKI 213 (351)
Q Consensus 173 ~~~~~----------------------------------~~k~~~l-----~~~l~~~~~~~~lIf~~~~~~~~~l~~~L 213 (351)
..+.. ....+++ ...++++.-.++||||.++..+..+-+++
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~ 525 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMM 525 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHH
Confidence 21111 0011111 11223344578999999999999999999
Q ss_pred HhcC---CeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCc
Q psy13286 214 TELG---YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHL 290 (351)
Q Consensus 214 ~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~ 290 (351)
..++ +.+.++||+..+.+|.+.++.|+.+..++||||++..+|+||.++-.+|+..+|.....|.||+||+||...-
T Consensus 526 ~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraerm 605 (725)
T KOG0349|consen 526 NQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERM 605 (725)
T ss_pred HHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhc
Confidence 8874 6899999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred eeEEEEec--------------------------------cchHHHHHHHHHHhccccCCCCcccccccc
Q psy13286 291 GIAINLIT--------------------------------YEDRYALHRIEKELGTEIKSIPKVIDPALY 328 (351)
Q Consensus 291 ~~~i~~~~--------------------------------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 328 (351)
|.+|+++. .++...+.++++.++.-++.++..++....
T Consensus 606 glaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~~vpv~ 675 (725)
T KOG0349|consen 606 GLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTMDVPVN 675 (725)
T ss_pred ceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCCCCCccc
Confidence 87777654 246677888999999999888887765443
No 79
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=3e-29 Score=245.95 Aligned_cols=282 Identities=18% Similarity=0.239 Sum_probs=194.6
Q ss_pred CcccccCCc---chhhhcccCcCCCCCceEEEEcCC----HHHHHHHHHHHHH-HHhhCCceEEEEECCcchHHHHHHHh
Q psy13286 1 MVQARQEPT---QFLYLNKLTPAKITSKATLIIVPT----RELALQTSQICIE-LAKHLNVKVMVTTGGTNLRDDIMRIY 72 (351)
Q Consensus 1 ~~~a~tgs~---~l~~l~~l~~~~~~~~~~lil~P~----~~L~~q~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~ 72 (351)
+|.++|||| .+|.+..-. .....+.+++.-|. ++|+.|+.+.+.. ++...|+.+ ...+ ...
T Consensus 93 iI~GeTGSGKTTqlPq~lle~-g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v----rf~~------~~s 161 (1294)
T PRK11131 93 IVAGETGSGKTTQLPKICLEL-GRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV----RFND------QVS 161 (1294)
T ss_pred EEECCCCCCHHHHHHHHHHHc-CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee----cCcc------ccC
Confidence 367899997 666332211 11222355555674 5777777776653 322223222 1111 113
Q ss_pred CCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccc-cccCcchHHH-HHHHHHhCCCCCcEEEEEeeCcchHHHHHHHh
Q psy13286 73 QKVHLIIATPGRILDLMDKQVANMDHCKILVLDEAD-KLLSQDFKGM-LDHVISILPHERQILLYSATFPLTVKNFMEKH 150 (351)
Q Consensus 73 ~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h-~~~~~~~~~~-~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~ 150 (351)
.+++|+++||++|++.+..... ++++++||+|||| +.++.+|... +..++.. .+..|++++|||++. ..+.+.+
T Consensus 162 ~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlKvILmSATid~--e~fs~~F 237 (1294)
T PRK11131 162 DNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKVIITSATIDP--ERFSRHF 237 (1294)
T ss_pred CCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc-CCCceEEEeeCCCCH--HHHHHHc
Confidence 4689999999999998876654 8999999999999 5778776632 3333322 245799999999974 3455444
Q ss_pred cCCCeEEeeccccccCCceEEEEEcCcc------cHHHHHHHHH---hhCCCCcEEEEeCchHHHHHHHHHHHhcCCe--
Q psy13286 151 LKDPYEINLMEELTLKGVTQYYAFVQER------QKVHCLNTLF---SKLQINQSIIFCNSTQRVELLAKKITELGYC-- 219 (351)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~k~~~l~~~l---~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~-- 219 (351)
...+ .+.+... ...+...|...... +....+...+ ....++.+|||+++.++++.+++.|++.+..
T Consensus 238 ~~ap-vI~V~Gr--~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~ 314 (1294)
T PRK11131 238 NNAP-IIEVSGR--TYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHT 314 (1294)
T ss_pred CCCC-EEEEcCc--cccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcc
Confidence 4333 3444332 23355555544321 1222222222 1345688999999999999999999987654
Q ss_pred -EEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecC---------------C---CChhhHhhh
Q psy13286 220 -CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDF---------------P---KMAETYLHR 280 (351)
Q Consensus 220 -~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~---------------p---~s~~~~~q~ 280 (351)
+..+||+++.++|..+++. .|..+|+|||++++.|+|+|++++||+++. | .|.++|.||
T Consensus 315 ~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QR 392 (1294)
T PRK11131 315 EILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQR 392 (1294)
T ss_pred eEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhh
Confidence 6789999999999999886 478899999999999999999999999863 3 456899999
Q ss_pred ccccccCCCceeEEEEeccchHH
Q psy13286 281 IGRSGRYGHLGIAINLITYEDRY 303 (351)
Q Consensus 281 ~GR~gR~~~~~~~i~~~~~~~~~ 303 (351)
+||+||. .+|.||.++++.+..
T Consensus 393 aGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 393 KGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred ccccCCC-CCcEEEEeCCHHHHH
Confidence 9999999 789999999987643
No 80
>KOG0353|consensus
Probab=99.97 E-value=1.1e-29 Score=213.48 Aligned_cols=305 Identities=18% Similarity=0.217 Sum_probs=232.5
Q ss_pred cccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH------HHH
Q psy13286 2 VQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD------IMR 70 (351)
Q Consensus 2 ~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~ 70 (351)
|..|||.| .||.|.. .+.+|+++|..+|++.+.-.++++ |+....+....+..+. +..
T Consensus 114 lil~tgggkslcyqlpal~a-------dg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~n 182 (695)
T KOG0353|consen 114 LILPTGGGKSLCYQLPALCA-------DGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITN 182 (695)
T ss_pred EEEeCCCccchhhhhhHHhc-------CCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcC
Confidence 45688875 6666554 479999999999999999888777 5554444444432211 122
Q ss_pred HhCCCcEEEEccHHHHH---HHh--ccCcCCCCccEEEEcccccccCcc--hHHHHH--HHHHhCCCCCcEEEEEeeCcc
Q psy13286 71 IYQKVHLIIATPGRILD---LMD--KQVANMDHCKILVLDEADKLLSQD--FKGMLD--HVISILPHERQILLYSATFPL 141 (351)
Q Consensus 71 ~~~~~~Ilv~Tp~~l~~---~l~--~~~~~~~~~~lvViDE~h~~~~~~--~~~~~~--~~~~~~~~~~~~i~~SaT~~~ 141 (351)
..+...++..||+++.+ ++. .+.+....+.++-+||+|++..++ |++.+. .++....+...++++|||.+.
T Consensus 183 kdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn 262 (695)
T KOG0353|consen 183 KDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATN 262 (695)
T ss_pred CCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhc
Confidence 23357799999999943 222 134456788999999999998754 665554 344444567779999999998
Q ss_pred hHHHHHHHhcCCCeEEeeccccccCCceEEEEEcCc--ccHHHHHHHHHh-hCCCCcEEEEeCchHHHHHHHHHHHhcCC
Q psy13286 142 TVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQE--RQKVHCLNTLFS-KLQINQSIIFCNSTQRVELLAKKITELGY 218 (351)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~~l~~~l~-~~~~~~~lIf~~~~~~~~~l~~~L~~~~~ 218 (351)
.+....+..+.-.....+...+..++....+..-+. ++-.+.+..+++ ...+...||||-+++.++.++..|+..|+
T Consensus 263 ~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi 342 (695)
T KOG0353|consen 263 HVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGI 342 (695)
T ss_pred chhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCc
Confidence 888777776654455556666666666544443332 233444444443 44567889999999999999999999999
Q ss_pred eEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhh-------------------
Q psy13286 219 CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLH------------------- 279 (351)
Q Consensus 219 ~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q------------------- 279 (351)
.+..+|..|.+.++.-.-+.|..|+++|+|+|-.+++|+|-|+++.||+.++|.|.+.|.|
T Consensus 343 ~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtg 422 (695)
T KOG0353|consen 343 HAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTG 422 (695)
T ss_pred cccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------------hccccccCCCceeEEEEeccchHHHHHHHHHHhccccC
Q psy13286 280 ------------------------RIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIK 317 (351)
Q Consensus 280 ------------------------~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~ 317 (351)
..||+||.+.++.||+++.-.|......+...-+..++
T Consensus 423 gstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ssmv~~e~~g~q 484 (695)
T KOG0353|consen 423 GSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSMVQMENTGIQ 484 (695)
T ss_pred CcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHHHHHHHhhhHH
Confidence 77999999999999999998887776666655444443
No 81
>KOG0951|consensus
Probab=99.97 E-value=2.1e-29 Score=237.97 Aligned_cols=298 Identities=19% Similarity=0.259 Sum_probs=222.1
Q ss_pred CcccccCCc-----chhhhcccCcCCC-------CCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKI-------TSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI 68 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~-------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 68 (351)
|++||||+| ++.+|..+..+.+ ...+++|++|.++|+++|...|.+.....|++|...+|+.....+
T Consensus 329 LlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~- 407 (1674)
T KOG0951|consen 329 LLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKE- 407 (1674)
T ss_pred EEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhh-
Confidence 589999996 6667766655433 236899999999999999999999999999999999998764332
Q ss_pred HHHhCCCcEEEEccHHHHHHHhccC--cCCCCccEEEEcccccccCcchHHHHHHHHHhC-------CCCCcEEEEEeeC
Q psy13286 69 MRIYQKVHLIIATPGRILDLMDKQV--ANMDHCKILVLDEADKLLSQDFKGMLDHVISIL-------PHERQILLYSATF 139 (351)
Q Consensus 69 ~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~-------~~~~~~i~~SaT~ 139 (351)
+ ..+..|+|+|||+..-+-++.. ...+-++++|+||.|. +.++.++.+..+.... ...++++++|||+
T Consensus 408 -q-ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHL-LhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATL 484 (1674)
T KOG0951|consen 408 -Q-IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHL-LHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATL 484 (1674)
T ss_pred -h-hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhh-cccccchHHHHHHHHHHHHhhhcccCceeeeecccC
Confidence 1 2468999999999954433311 1245778999999995 5555667776554443 2367899999999
Q ss_pred cchHHHHHHHhcC--CCeEEeeccccccCCceEEEEEcCcccHH--------HHHHHHHhhCCCCcEEEEeCchHHHHHH
Q psy13286 140 PLTVKNFMEKHLK--DPYEINLMEELTLKGVTQYYAFVQERQKV--------HCLNTLFSKLQINQSIIFCNSTQRVELL 209 (351)
Q Consensus 140 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--------~~l~~~l~~~~~~~~lIf~~~~~~~~~l 209 (351)
|+... ...+++ .+-......+..+.++.+-+.-+.+..-. .+...++.....+++|||+.+++++.+.
T Consensus 485 PNy~D--V~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~kt 562 (1674)
T KOG0951|consen 485 PNYED--VASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKT 562 (1674)
T ss_pred Cchhh--hHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHH
Confidence 98653 223222 22333444566777777777766654221 2344566666779999999999999999
Q ss_pred HHHHHh-------------------------------------cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc
Q psy13286 210 AKKITE-------------------------------------LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL 252 (351)
Q Consensus 210 ~~~L~~-------------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 252 (351)
|+.++. ..++++++|.||++.+|..+.+.|+.|+++++|+|..
T Consensus 563 A~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstat 642 (1674)
T KOG0951|consen 563 ARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTAT 642 (1674)
T ss_pred HHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehh
Confidence 998873 2467899999999999999999999999999999999
Q ss_pred CCCCCCCCCCCEEE----EecC------CCChhhHhhhccccccCCC--ceeEEEEeccchHHH
Q psy13286 253 FTRGIDVQAVNVVI----NFDF------PKMAETYLHRIGRSGRYGH--LGIAINLITYEDRYA 304 (351)
Q Consensus 253 ~~~G~di~~~~~Vi----~~~~------p~s~~~~~q~~GR~gR~~~--~~~~i~~~~~~~~~~ 304 (351)
+++|+|+|+.+++| .||+ +.|+.+..||+|||||.+. .|..++..+..+...
T Consensus 643 lawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qy 706 (1674)
T KOG0951|consen 643 LAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQY 706 (1674)
T ss_pred hhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhh
Confidence 99999999877766 3554 4578899999999999754 356666555544333
No 82
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=3.8e-28 Score=234.91 Aligned_cols=136 Identities=20% Similarity=0.288 Sum_probs=117.0
Q ss_pred cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHH-hcCCeEEEeccCCCHHHHHHHHHHhhcC--CccEEEEeCcCCC
Q psy13286 179 QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKIT-ELGYCCYYIHARMAQAHRNRVFHDFRSG--LCRNLVCSDLFTR 255 (351)
Q Consensus 179 ~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~ilv~T~~~~~ 255 (351)
.|.+.+..+++...+.++||||+++..+..+++.|+ ..|+.+..+||+|+..+|.++++.|+++ ..+|||||++.++
T Consensus 479 ~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgse 558 (956)
T PRK04914 479 PRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSE 558 (956)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhcc
Confidence 456677778887778899999999999999999994 5699999999999999999999999984 5999999999999
Q ss_pred CCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhcc
Q psy13286 256 GIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGT 314 (351)
Q Consensus 256 G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~ 314 (351)
|+|++.+++||+||+|+++..|.||+||++|.|+++.+.+++...+......+.+.+..
T Consensus 559 GlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 559 GRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred CCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999887776655443333444444443
No 83
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=3.9e-27 Score=217.07 Aligned_cols=284 Identities=17% Similarity=0.177 Sum_probs=186.2
Q ss_pred CcccccCCc-chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHHh-CCC
Q psy13286 1 MVQARQEPT-QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRIY-QKV 75 (351)
Q Consensus 1 ~~~a~tgs~-~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~-~~~ 75 (351)
||+++|||| ...++..+......++++||++|+++|+.|+++.+++.. +.++..++++.+..+. |..+. ...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~g~~ 77 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKNGEI 77 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 789999998 222222232223345789999999999999999987754 5678888888765433 33333 357
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcc-----h-HHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHH
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQD-----F-KGMLDHVISILPHERQILLYSATFPLTVKNFMEK 149 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~-----~-~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 149 (351)
+|+|+|+..+. .++.++++|||||.|....+. | ...+....... ...+++++|||++.+.......
T Consensus 78 ~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~-~~~~vil~SATPsles~~~~~~ 149 (505)
T TIGR00595 78 LVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK-FNCPVVLGSATPSLESYHNAKQ 149 (505)
T ss_pred CEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHh-cCCCEEEEeCCCCHHHHHHHhc
Confidence 99999998773 357899999999999766432 1 12233333333 5677999999987554333321
Q ss_pred hcCCCeEEeeccccccCCceEE-EEEcCccc----HHHHHH-HHHhhC-CCCcEEEEeCchHH-----------------
Q psy13286 150 HLKDPYEINLMEELTLKGVTQY-YAFVQERQ----KVHCLN-TLFSKL-QINQSIIFCNSTQR----------------- 205 (351)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----k~~~l~-~~l~~~-~~~~~lIf~~~~~~----------------- 205 (351)
+....+.............. +....... ....+. .+.+.. .++++|||+|.+.-
T Consensus 150 --g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~ 227 (505)
T TIGR00595 150 --KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPN 227 (505)
T ss_pred --CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCC
Confidence 11112222221111111111 11111111 111222 222222 34578998665432
Q ss_pred -------------------------------------------HHHHHHHHHhc--CCeEEEeccCCCHHHH--HHHHHH
Q psy13286 206 -------------------------------------------VELLAKKITEL--GYCCYYIHARMAQAHR--NRVFHD 238 (351)
Q Consensus 206 -------------------------------------------~~~l~~~L~~~--~~~~~~~~~~~~~~~r--~~~~~~ 238 (351)
++++.+.|++. +.++..+|++++...+ +.+++.
T Consensus 228 C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~ 307 (505)
T TIGR00595 228 CDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQ 307 (505)
T ss_pred CCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHH
Confidence 57788888876 6788999999876655 889999
Q ss_pred hhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCC------------ChhhHhhhccccccCCCceeEEEEe
Q psy13286 239 FRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPK------------MAETYLHRIGRSGRYGHLGIAINLI 297 (351)
Q Consensus 239 f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~------------s~~~~~q~~GR~gR~~~~~~~i~~~ 297 (351)
|++|+.+|||+|++++.|+|+|++++|+.+|... ....|.|++||+||.+..|.+++..
T Consensus 308 f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 308 FANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred HhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 9999999999999999999999999886554431 1356899999999999999888654
No 84
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=4.8e-28 Score=220.53 Aligned_cols=271 Identities=17% Similarity=0.205 Sum_probs=183.6
Q ss_pred CcccccCCcchhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEE
Q psy13286 1 MVQARQEPTQFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIA 80 (351)
Q Consensus 1 ~~~a~tgs~~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~ 80 (351)
+|++|||+|.--+...+...... .+|||+|+++|+.||.+.+.+..... ..+..+.|+..... . ..|.|+
T Consensus 59 vivlpTGaGKT~va~~~~~~~~~--~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~~~~~------~-~~i~va 128 (442)
T COG1061 59 VIVLPTGAGKTVVAAEAIAELKR--STLVLVPTKELLDQWAEALKKFLLLN-DEIGIYGGGEKELE------P-AKVTVA 128 (442)
T ss_pred EEEeCCCCCHHHHHHHHHHHhcC--CEEEEECcHHHHHHHHHHHHHhcCCc-cccceecCceeccC------C-CcEEEE
Confidence 47899999833222222222222 39999999999999997765554321 13344444443111 1 469999
Q ss_pred ccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchH---HHHHHHhcCCCeEE
Q psy13286 81 TPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTV---KNFMEKHLKDPYEI 157 (351)
Q Consensus 81 Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~---~~~~~~~~~~~~~~ 157 (351)
|.+.+.............+++||+||||++.+..+......+....+ ++++|||++..- ...+...+. +...
T Consensus 129 t~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~----~LGLTATp~R~D~~~~~~l~~~~g-~~vy 203 (442)
T COG1061 129 TVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYP----RLGLTATPEREDGGRIGDLFDLIG-PIVY 203 (442)
T ss_pred EhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcccc----eeeeccCceeecCCchhHHHHhcC-CeEe
Confidence 99999764211122345799999999999988876655555433332 899999976321 111121221 1222
Q ss_pred eec--cc---cccCCceEEEEEc--------------------------------------CcccHHHHHHHHHhhC-CC
Q psy13286 158 NLM--EE---LTLKGVTQYYAFV--------------------------------------QERQKVHCLNTLFSKL-QI 193 (351)
Q Consensus 158 ~~~--~~---~~~~~~~~~~~~~--------------------------------------~~~~k~~~l~~~l~~~-~~ 193 (351)
... +. ....+.......+ ....+...+..++... ++
T Consensus 204 ~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (442)
T COG1061 204 EVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARG 283 (442)
T ss_pred ecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCC
Confidence 111 00 0000111111111 1112334444555544 46
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCC
Q psy13286 194 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKM 273 (351)
Q Consensus 194 ~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s 273 (351)
.+++|||.+..++..++..+...+. +..+++..+..+|..+++.|+.|..++|+++.++.+|+|+|+++++|...+..|
T Consensus 284 ~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S 362 (442)
T COG1061 284 DKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGS 362 (442)
T ss_pred CcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCc
Confidence 7999999999999999999988877 889999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhccccccC
Q psy13286 274 AETYLHRIGRSGRY 287 (351)
Q Consensus 274 ~~~~~q~~GR~gR~ 287 (351)
...|+||+||..|.
T Consensus 363 ~~~~~Q~lGR~LR~ 376 (442)
T COG1061 363 RRLFIQRLGRGLRP 376 (442)
T ss_pred HHHHHHHhhhhccC
Confidence 99999999999993
No 85
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=1.1e-27 Score=235.77 Aligned_cols=287 Identities=18% Similarity=0.195 Sum_probs=196.8
Q ss_pred CcccccCCc---chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcE
Q psy13286 1 MVQARQEPT---QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHL 77 (351)
Q Consensus 1 ~~~a~tgs~---~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~I 77 (351)
+|+++|||| .+|.+..- ......+++++.-|.+.-+..++..+.+ ..+.++....|..-..+. .......|
T Consensus 86 ii~g~TGSGKTTqlPq~lle-~~~~~~~~I~~tQPRRlAA~svA~RvA~---elg~~lG~~VGY~vR~~~--~~s~~T~I 159 (1283)
T TIGR01967 86 IIAGETGSGKTTQLPKICLE-LGRGSHGLIGHTQPRRLAARTVAQRIAE---ELGTPLGEKVGYKVRFHD--QVSSNTLV 159 (1283)
T ss_pred EEeCCCCCCcHHHHHHHHHH-cCCCCCceEecCCccHHHHHHHHHHHHH---HhCCCcceEEeeEEcCCc--ccCCCcee
Confidence 478999997 66644321 1222235777788998888776655433 334444333332110001 11345789
Q ss_pred EEEccHHHHHHHhccCcCCCCccEEEEcccc-cccCcchHHH-HHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCe
Q psy13286 78 IIATPGRILDLMDKQVANMDHCKILVLDEAD-KLLSQDFKGM-LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPY 155 (351)
Q Consensus 78 lv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h-~~~~~~~~~~-~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 155 (351)
.++|++.|++.+..... +..+++||+||+| +.++.+|.-. ++.++... +..+++++|||++. ..+.+.+...+
T Consensus 160 ~~~TdGiLLr~l~~d~~-L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSATld~--~~fa~~F~~ap- 234 (1283)
T TIGR01967 160 KLMTDGILLAETQQDRF-LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSATIDP--ERFSRHFNNAP- 234 (1283)
T ss_pred eeccccHHHHHhhhCcc-cccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCCcCH--HHHHHHhcCCC-
Confidence 99999999988866553 7899999999999 5778776643 45554443 46789999999974 34444443333
Q ss_pred EEeeccccccCCceEEEEEcCcc------cHHHHHHHHHh---hCCCCcEEEEeCchHHHHHHHHHHHhcC---CeEEEe
Q psy13286 156 EINLMEELTLKGVTQYYAFVQER------QKVHCLNTLFS---KLQINQSIIFCNSTQRVELLAKKITELG---YCCYYI 223 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~------~k~~~l~~~l~---~~~~~~~lIf~~~~~~~~~l~~~L~~~~---~~~~~~ 223 (351)
.+.+... ...+..+|...... ++...+...+. ...++.+|||+++..+++.+++.|++.+ ..+..+
T Consensus 235 vI~V~Gr--~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpL 312 (1283)
T TIGR01967 235 IIEVSGR--TYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPL 312 (1283)
T ss_pred EEEECCC--cccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEec
Confidence 3444322 22344444433211 22233322222 2245889999999999999999998764 458899
Q ss_pred ccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCC------------------CChhhHhhhccccc
Q psy13286 224 HARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFP------------------KMAETYLHRIGRSG 285 (351)
Q Consensus 224 ~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p------------------~s~~~~~q~~GR~g 285 (351)
||+++.++|.++++.+ +..+|+|||++++.|+|+|++++||+++.+ .|.++|.||.||+|
T Consensus 313 hg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAG 390 (1283)
T TIGR01967 313 YARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCG 390 (1283)
T ss_pred cCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhC
Confidence 9999999999986654 346899999999999999999999999853 36689999999999
Q ss_pred cCCCceeEEEEeccchHH
Q psy13286 286 RYGHLGIAINLITYEDRY 303 (351)
Q Consensus 286 R~~~~~~~i~~~~~~~~~ 303 (351)
|.+ +|.|+.++++.+..
T Consensus 391 R~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 391 RVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred CCC-CceEEEecCHHHHH
Confidence 997 89999999977543
No 86
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.9e-27 Score=222.18 Aligned_cols=296 Identities=15% Similarity=0.140 Sum_probs=215.9
Q ss_pred CcccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEE
Q psy13286 1 MVQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78 (351)
Q Consensus 1 ~~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Il 78 (351)
+.+++||+| +++.+..+..+..+ ..+-+++|+.-||.|-++++..+...+|+++..+.++.+..+... ...++|+
T Consensus 97 iaEm~TGEGKTLvA~l~a~l~al~G-~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~--~y~~dI~ 173 (796)
T PRK12906 97 IAEMKTGEGKTLTATLPVYLNALTG-KGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRA--AYNCDIT 173 (796)
T ss_pred cccccCCCCCcHHHHHHHHHHHHcC-CCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHH--HhcCCCe
Confidence 357889886 67777776666665 788899999999999999999999999999999998776554432 3468999
Q ss_pred EEccHHH-HHHHhccCc------CCCCccEEEEcccccccCc-------------c---hHHHHHHHHHhCCC-------
Q psy13286 79 IATPGRI-LDLMDKQVA------NMDHCKILVLDEADKLLSQ-------------D---FKGMLDHVISILPH------- 128 (351)
Q Consensus 79 v~Tp~~l-~~~l~~~~~------~~~~~~lvViDE~h~~~~~-------------~---~~~~~~~~~~~~~~------- 128 (351)
.+|...+ .++|+.+.. ....+.+.||||+|.++=+ . ....+..+...+..
T Consensus 174 Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~ 253 (796)
T PRK12906 174 YSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGD 253 (796)
T ss_pred ecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhcccc
Confidence 9999999 566665432 2357889999999965310 0 00111111110000
Q ss_pred --------------------------------------------------------------------------------
Q psy13286 129 -------------------------------------------------------------------------------- 128 (351)
Q Consensus 129 -------------------------------------------------------------------------------- 128 (351)
T Consensus 254 ~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR 333 (796)
T PRK12906 254 DDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGR 333 (796)
T ss_pred ccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCC
Confidence
Q ss_pred -----------------------------------------CCcEEEEEeeCcchHHHHHHHhcCCCeEEeeccccccCC
Q psy13286 129 -----------------------------------------ERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKG 167 (351)
Q Consensus 129 -----------------------------------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (351)
-.++.+||+|......++.+-|..+...+..........
T Consensus 334 ~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d 413 (796)
T PRK12906 334 VMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKD 413 (796)
T ss_pred cCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeee
Confidence 124556666665444445444433322221111111111
Q ss_pred ceEEEEEcCcccHHHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCcc
Q psy13286 168 VTQYYAFVQERQKVHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCR 245 (351)
Q Consensus 168 ~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 245 (351)
.+ ...+.....|...+...+.. ..+.++||||+|++.++.++..|.+.+++...+|+++...++..+.+.+++|.
T Consensus 414 ~~-d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~-- 490 (796)
T PRK12906 414 SP-DLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA-- 490 (796)
T ss_pred CC-CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--
Confidence 11 12233445688888877753 36789999999999999999999999999999999999888888888888885
Q ss_pred EEEEeCcCCCCCCCC---CCC-----EEEEecCCCChhhHhhhccccccCCCceeEEEEeccchH
Q psy13286 246 NLVCSDLFTRGIDVQ---AVN-----VVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDR 302 (351)
Q Consensus 246 ilv~T~~~~~G~di~---~~~-----~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~ 302 (351)
|+|||+++++|+||+ ++. |||+++.|.|...|.|+.||+||.|.+|.+..+++.+|.
T Consensus 491 VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 491 VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 999999999999995 788 999999999999999999999999999999999998763
No 87
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=8.1e-27 Score=220.30 Aligned_cols=293 Identities=14% Similarity=0.156 Sum_probs=206.7
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+.+|+||+| .+|++... .. +..++|++||++||.|.++++..+.+.+|+++..+.|+.+....... ..+
T Consensus 99 Iaem~TGeGKTL~a~Lpa~~~a---l~-G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~--y~~ 172 (896)
T PRK13104 99 IAEMRTGEGKTLVATLPAYLNA---IS-GRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEA--YKA 172 (896)
T ss_pred cccccCCCCchHHHHHHHHHHH---hc-CCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHH--hCC
Confidence 357899996 45554333 23 35799999999999999999999999999999999999876655333 368
Q ss_pred cEEEEccHHH-HHHHhccC-cCC-----CCccEEEEcccccccCc----------------chHHHHHHHHHhCC-----
Q psy13286 76 HLIIATPGRI-LDLMDKQV-ANM-----DHCKILVLDEADKLLSQ----------------DFKGMLDHVISILP----- 127 (351)
Q Consensus 76 ~Ilv~Tp~~l-~~~l~~~~-~~~-----~~~~lvViDE~h~~~~~----------------~~~~~~~~~~~~~~----- 127 (351)
+|+++||..| +++++.+. ..+ ..+.++|+||+|.++=+ .....+..+...+.
T Consensus 173 dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~ 252 (896)
T PRK13104 173 DIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEE 252 (896)
T ss_pred CEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhcccc
Confidence 9999999999 99998773 333 58999999999976310 00111111111110
Q ss_pred ---------C----------------------------------------------------------------------
Q psy13286 128 ---------H---------------------------------------------------------------------- 128 (351)
Q Consensus 128 ---------~---------------------------------------------------------------------- 128 (351)
.
T Consensus 253 ~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVD 332 (896)
T PRK13104 253 GDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVD 332 (896)
T ss_pred CCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEE
Confidence 0
Q ss_pred ----------------------------------------------CCcEEEEEeeCcchHHHHHHHhcCCCeEEeeccc
Q psy13286 129 ----------------------------------------------ERQILLYSATFPLTVKNFMEKHLKDPYEINLMEE 162 (351)
Q Consensus 129 ----------------------------------------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
-.++-+||+|......++.+-|..+.+.+.....
T Consensus 333 e~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp 412 (896)
T PRK13104 333 EHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRS 412 (896)
T ss_pred CCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCC
Confidence 1123344444433333333333332222211111
Q ss_pred cccCCceEEEEEcCcccHHHHHHHHHh--hCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhh
Q psy13286 163 LTLKGVTQYYAFVQERQKVHCLNTLFS--KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFR 240 (351)
Q Consensus 163 ~~~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 240 (351)
......+. ..+.....|...+...+. ...+.|+||||+|++.++.+++.|.+.+++...+|+.+...++..+.+.|+
T Consensus 413 ~~R~d~~d-~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~ 491 (896)
T PRK13104 413 MIRKDEAD-LVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGR 491 (896)
T ss_pred cceecCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCC
Confidence 11111111 233344567777766553 345789999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCcCCCCCCCCCC--------------------------------------CEEEEecCCCChhhHhhhcc
Q psy13286 241 SGLCRNLVCSDLFTRGIDVQAV--------------------------------------NVVINFDFPKMAETYLHRIG 282 (351)
Q Consensus 241 ~g~~~ilv~T~~~~~G~di~~~--------------------------------------~~Vi~~~~p~s~~~~~q~~G 282 (351)
+| .|+|||+++++|+||.=- =|||--..+.|..-=-|-.|
T Consensus 492 ~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrG 569 (896)
T PRK13104 492 PG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRG 569 (896)
T ss_pred CC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhcc
Confidence 99 499999999999998611 25777777777777789999
Q ss_pred ccccCCCceeEEEEeccchH
Q psy13286 283 RSGRYGHLGIAINLITYEDR 302 (351)
Q Consensus 283 R~gR~~~~~~~i~~~~~~~~ 302 (351)
|+||.|.+|.+-.|++-+|.
T Consensus 570 RaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 570 RAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred ccccCCCCCceEEEEEcCcH
Confidence 99999999999999987764
No 88
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=6.3e-27 Score=223.72 Aligned_cols=268 Identities=22% Similarity=0.239 Sum_probs=212.5
Q ss_pred cCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH---HHhC-CCcEEEEccHHHHHHHhccCc
Q psy13286 19 PAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM---RIYQ-KVHLIIATPGRILDLMDKQVA 94 (351)
Q Consensus 19 ~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~-~~~Ilv~Tp~~l~~~l~~~~~ 94 (351)
.+...|+++.+||||.-|++|.++.|++-....+++|..++.-.+..++.. .+.+ ..||+|+|+.-|.+ ..
T Consensus 638 kAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~k-----dv 712 (1139)
T COG1197 638 KAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSK-----DV 712 (1139)
T ss_pred HHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCC-----Cc
Confidence 344556999999999999999999999999999999999887776555433 3333 69999999876644 33
Q ss_pred CCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCeEEeeccccccCCceEEEEE
Q psy13286 95 NMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAF 174 (351)
Q Consensus 95 ~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (351)
.+++++++||||-|+ |+-.-+.-++.+..+.-++-+||||-++...+....+++-..+.++.....+ +.-++..
T Consensus 713 ~FkdLGLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p-V~T~V~~ 786 (1139)
T COG1197 713 KFKDLGLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP-VKTFVSE 786 (1139)
T ss_pred EEecCCeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc-eEEEEec
Confidence 588999999999998 5555566666667777899999999999888888877776666554443333 3222222
Q ss_pred cCcccHHHHHHHHHhh-CCCCcEEEEeCchHHHHHHHHHHHhc--CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 175 VQERQKVHCLNTLFSK-LQINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 175 ~~~~~k~~~l~~~l~~-~~~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
.+..-.. ..++++ .++|++...+|.++..+.+++.|+.. ..++.+.||.|+..+-++++.+|-+|+.+|||||.
T Consensus 787 ~d~~~ir---eAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT 863 (1139)
T COG1197 787 YDDLLIR---EAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT 863 (1139)
T ss_pred CChHHHH---HHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee
Confidence 2222112 223333 34678888889999999999999987 67789999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCEEEEecCCCC-hhhHhhhccccccCCCceeEEEEeccc
Q psy13286 252 LFTRGIDVQAVNVVINFDFPKM-AETYLHRIGRSGRYGHLGIAINLITYE 300 (351)
Q Consensus 252 ~~~~G~di~~~~~Vi~~~~p~s-~~~~~q~~GR~gR~~~~~~~i~~~~~~ 300 (351)
+++.|+|||+++.+|..+...- .++..|..||+||.+..++|+.++...
T Consensus 864 IIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 864 IIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred eeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 9999999999999998887643 678899999999999999999999863
No 89
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.95 E-value=1.9e-26 Score=220.05 Aligned_cols=287 Identities=16% Similarity=0.160 Sum_probs=186.8
Q ss_pred CcccccCCcc-hhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHHh-CCC
Q psy13286 1 MVQARQEPTQ-FLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRIY-QKV 75 (351)
Q Consensus 1 ~~~a~tgs~~-l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~-~~~ 75 (351)
|++++||||- ..++..+......++++||++|+++|+.|+.+.+++.. +.++..++|+.+..+. +..+. ...
T Consensus 166 Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~ 242 (679)
T PRK05580 166 LLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEA 242 (679)
T ss_pred EEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 5789999972 22222222222235799999999999999999887654 6789999998765433 33333 358
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcch------HHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHH
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDF------KGMLDHVISILPHERQILLYSATFPLTVKNFMEK 149 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~------~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 149 (351)
+|+|+|+..+. .++.++++||+||+|....... ...+. .......+.+++++|||++.........
T Consensus 243 ~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va-~~ra~~~~~~~il~SATps~~s~~~~~~ 314 (679)
T PRK05580 243 KVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA-VVRAKLENIPVVLGSATPSLESLANAQQ 314 (679)
T ss_pred CEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHH-HHHhhccCCCEEEEcCCCCHHHHHHHhc
Confidence 99999998774 3578999999999997654321 11222 2233346788999999987655443322
Q ss_pred hcCCCeEEeeccccccCCceEEE-EEcCcc-------cHHHHHHH-HHhhC-CCCcEEEEeCch----------------
Q psy13286 150 HLKDPYEINLMEELTLKGVTQYY-AFVQER-------QKVHCLNT-LFSKL-QINQSIIFCNST---------------- 203 (351)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~k~~~l~~-~l~~~-~~~~~lIf~~~~---------------- 203 (351)
+....+............... ...... .....+.. +.+.. .+.++|||++.+
T Consensus 315 --g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~ 392 (679)
T PRK05580 315 --GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAE 392 (679)
T ss_pred --cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccC
Confidence 122222222222111111111 111000 01111222 22222 244677776542
Q ss_pred --------------------------------------------HHHHHHHHHHHhc--CCeEEEeccCCC--HHHHHHH
Q psy13286 204 --------------------------------------------QRVELLAKKITEL--GYCCYYIHARMA--QAHRNRV 235 (351)
Q Consensus 204 --------------------------------------------~~~~~l~~~L~~~--~~~~~~~~~~~~--~~~r~~~ 235 (351)
..++++++.|++. +.++..+|+++. .++++++
T Consensus 393 C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~ 472 (679)
T PRK05580 393 CPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQL 472 (679)
T ss_pred CCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHH
Confidence 2456788888776 678899999986 4678999
Q ss_pred HHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCC--CC----------hhhHhhhccccccCCCceeEEEEeccc
Q psy13286 236 FHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFP--KM----------AETYLHRIGRSGRYGHLGIAINLITYE 300 (351)
Q Consensus 236 ~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p--~s----------~~~~~q~~GR~gR~~~~~~~i~~~~~~ 300 (351)
++.|++|+.+|||+|+++++|+|+|++++|+.++.. .+ ...|.|++||+||.+..|.+++.....
T Consensus 473 l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 473 LAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred HHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 999999999999999999999999999998766543 22 256899999999999999999765443
No 90
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=2.4e-26 Score=216.91 Aligned_cols=296 Identities=16% Similarity=0.150 Sum_probs=217.8
Q ss_pred CcccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEE
Q psy13286 1 MVQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78 (351)
Q Consensus 1 ~~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Il 78 (351)
+.+++||+| +...+..+..+..+ ..+-|++||..||.|.++++..+.+.+|+++..+.|+.+.......+ .++|+
T Consensus 98 Iaem~TGeGKTLva~lpa~l~aL~G-~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ 174 (830)
T PRK12904 98 IAEMKTGEGKTLVATLPAYLNALTG-KGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAY--AADIT 174 (830)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHHcC-CCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeE
Confidence 357888886 44443443333333 45779999999999999999999999999999999998776654443 59999
Q ss_pred EEccHHH-HHHHhccCc------CCCCccEEEEcccccccCc----------------chHHHHHHHHHhCCC-------
Q psy13286 79 IATPGRI-LDLMDKQVA------NMDHCKILVLDEADKLLSQ----------------DFKGMLDHVISILPH------- 128 (351)
Q Consensus 79 v~Tp~~l-~~~l~~~~~------~~~~~~lvViDE~h~~~~~----------------~~~~~~~~~~~~~~~------- 128 (351)
++||..+ .++++.+.. ....+.++|+||+|.++=+ .....+..+...+..
T Consensus 175 ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 254 (830)
T PRK12904 175 YGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVD 254 (830)
T ss_pred EECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEE
Confidence 9999999 899987652 3678899999999976310 011111111111100
Q ss_pred --------------------------------------------------------------------------------
Q psy13286 129 -------------------------------------------------------------------------------- 128 (351)
Q Consensus 129 -------------------------------------------------------------------------------- 128 (351)
T Consensus 255 e~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GL 334 (830)
T PRK12904 255 EKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGL 334 (830)
T ss_pred cCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHH
Confidence
Q ss_pred ------------------------------CCcEEEEEeeCcchHHHHHHHhcCCCeEEeeccccccCCceEEEEEcCcc
Q psy13286 129 ------------------------------ERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQER 178 (351)
Q Consensus 129 ------------------------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (351)
-..+.+||+|......++.+-|..+...+...........+. .......
T Consensus 335 HQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d-~i~~t~~ 413 (830)
T PRK12904 335 HQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPD-LIYKTEK 413 (830)
T ss_pred HHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCC-eEEECHH
Confidence 124567777776555555555544433332222211111111 2334455
Q ss_pred cHHHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCC
Q psy13286 179 QKVHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRG 256 (351)
Q Consensus 179 ~k~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G 256 (351)
+|...+...+.. ..+.++||||+|++.++.+++.|...++++..+|+. ..+|+..+..|+.+...|+|||+++++|
T Consensus 414 ~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRG 491 (830)
T PRK12904 414 EKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRG 491 (830)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCC
Confidence 788888888865 567899999999999999999999999999999995 7789999999999999999999999999
Q ss_pred CCCCCC--------------------------------------CEEEEecCCCChhhHhhhccccccCCCceeEEEEec
Q psy13286 257 IDVQAV--------------------------------------NVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLIT 298 (351)
Q Consensus 257 ~di~~~--------------------------------------~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~ 298 (351)
+||+-- =|||.-..|.|..---|-.||+||.|.+|.+-.|++
T Consensus 492 tDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lS 571 (830)
T PRK12904 492 TDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLS 571 (830)
T ss_pred cCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEE
Confidence 999632 268888888888888899999999999999999998
Q ss_pred cchH
Q psy13286 299 YEDR 302 (351)
Q Consensus 299 ~~~~ 302 (351)
-+|.
T Consensus 572 leD~ 575 (830)
T PRK12904 572 LEDD 575 (830)
T ss_pred cCcH
Confidence 7763
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=3.9e-26 Score=219.71 Aligned_cols=284 Identities=19% Similarity=0.277 Sum_probs=184.7
Q ss_pred CcccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC--CceEEEEECCcchHHHH------
Q psy13286 1 MVQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL--NVKVMVTTGGTNLRDDI------ 68 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~------ 68 (351)
+|+||||+| .|.....+... ....+++|..||++.++|+++.++++.... ..++...+|........
T Consensus 305 ileApTGsGKTEAAL~~A~~l~~~-~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~ 383 (878)
T PRK09694 305 IIEAPTGSGKTEAALAYAWRLIDQ-GLADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSR 383 (878)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHh-CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcc
Confidence 578999997 34433443333 334799999999999999999998765432 35677777765421110
Q ss_pred ---------------HHHh---C---CCcEEEEccHHHHHH-HhccCcCCCCc----cEEEEcccccccCcchHHHHHHH
Q psy13286 69 ---------------MRIY---Q---KVHLIIATPGRILDL-MDKQVANMDHC----KILVLDEADKLLSQDFKGMLDHV 122 (351)
Q Consensus 69 ---------------~~~~---~---~~~Ilv~Tp~~l~~~-l~~~~~~~~~~----~lvViDE~h~~~~~~~~~~~~~~ 122 (351)
.++. + -.+|+|+|++.++.. +..+...+..+ ++|||||+|.+ +......+..+
T Consensus 384 ~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~ 462 (878)
T PRK09694 384 AATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAV 462 (878)
T ss_pred cccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHH
Confidence 1111 1 268999999999753 32222222333 48999999965 44444455554
Q ss_pred HHhC-CCCCcEEEEEeeCcchHHHHHHH-hcCC-CeE-------Eeec-----cccccC------CceEEEE--Ec--Cc
Q psy13286 123 ISIL-PHERQILLYSATFPLTVKNFMEK-HLKD-PYE-------INLM-----EELTLK------GVTQYYA--FV--QE 177 (351)
Q Consensus 123 ~~~~-~~~~~~i~~SaT~~~~~~~~~~~-~~~~-~~~-------~~~~-----~~~~~~------~~~~~~~--~~--~~ 177 (351)
+..+ .....+++||||+|......+.. +... +.. +... ...... .....+. .. ..
T Consensus 463 L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~ 542 (878)
T PRK09694 463 LKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLAD 542 (878)
T ss_pred HHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeecccc
Confidence 4443 23456999999999887654433 2111 000 0000 000000 0111111 11 11
Q ss_pred -ccHHHHHHHHHhh-CCCCcEEEEeCchHHHHHHHHHHHhcC---CeEEEeccCCCHHHHH----HHHHHh-hcCC---c
Q psy13286 178 -RQKVHCLNTLFSK-LQINQSIIFCNSTQRVELLAKKITELG---YCCYYIHARMAQAHRN----RVFHDF-RSGL---C 244 (351)
Q Consensus 178 -~~k~~~l~~~l~~-~~~~~~lIf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~----~~~~~f-~~g~---~ 244 (351)
......+..+++. ..+++++||||+++.|+.+++.|++.+ ..+..+|++++..+|. ++++.| ++|+ .
T Consensus 543 ~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~ 622 (878)
T PRK09694 543 MLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQG 622 (878)
T ss_pred ccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCC
Confidence 1223344455543 346789999999999999999999764 6799999999999884 567788 5665 4
Q ss_pred cEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCC
Q psy13286 245 RNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGH 289 (351)
Q Consensus 245 ~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~ 289 (351)
.|||+|++++.|+|+ +++++|....| .+.++||+||+||.+.
T Consensus 623 ~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 623 RILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 799999999999999 58999998888 7899999999999875
No 92
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=3e-25 Score=184.43 Aligned_cols=280 Identities=17% Similarity=0.189 Sum_probs=197.6
Q ss_pred CcccccCCcch-hhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEE
Q psy13286 1 MVQARQEPTQF-LYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLII 79 (351)
Q Consensus 1 ~~~a~tgs~~l-~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv 79 (351)
||+|=||+|-- .+++.+..+.+.|.++.+..|....+.+.+..+++-.. +..+..++|+.+. .. +.+++|
T Consensus 120 lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~--~~~I~~Lyg~S~~------~f-r~plvV 190 (441)
T COG4098 120 LVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFS--NCDIDLLYGDSDS------YF-RAPLVV 190 (441)
T ss_pred EEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhc--cCCeeeEecCCch------hc-cccEEE
Confidence 57888999832 33445566667789999999999999999988876654 5788889998863 22 278999
Q ss_pred EccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCeEEee
Q psy13286 80 ATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINL 159 (351)
Q Consensus 80 ~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 159 (351)
+|...|+++ ...||++||||+|-+....-.................+.+|||+++.+...+... +-..+.+
T Consensus 191 aTtHQLlrF-------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g--~~~~~kl 261 (441)
T COG4098 191 ATTHQLLRF-------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTKKLERKILKG--NLRILKL 261 (441)
T ss_pred EehHHHHHH-------HhhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChHHHHHHhhhC--CeeEeec
Confidence 999999887 4688999999999765543333333444555566779999999997766554432 2223334
Q ss_pred ccccccC--CceEEEEEcCcccH------HHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhc-C-CeEEEeccCC
Q psy13286 160 MEELTLK--GVTQYYAFVQERQK------VHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITEL-G-YCCYYIHARM 227 (351)
Q Consensus 160 ~~~~~~~--~~~~~~~~~~~~~k------~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~~~-~-~~~~~~~~~~ 227 (351)
....... .++.+.-..+...+ ...+..++.. ..+.+++||+++.+..+.++..|+.. + ..+...|+.
T Consensus 262 p~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~- 340 (441)
T COG4098 262 PARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE- 340 (441)
T ss_pred chhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc-
Confidence 3332221 23333333332222 2245555543 34689999999999999999999654 2 344567774
Q ss_pred CHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCC--CChhhHhhhccccccCCC--ceeEEEEeccc
Q psy13286 228 AQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFP--KMAETYLHRIGRSGRYGH--LGIAINLITYE 300 (351)
Q Consensus 228 ~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p--~s~~~~~q~~GR~gR~~~--~~~~i~~~~~~ 300 (351)
...|.+.++.|++|+..+|++|.++++|+.+|++++.+.-.-- .+.+.++|.+||+||.-. .|.++.|-...
T Consensus 341 -d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 341 -DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred -CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccc
Confidence 4568899999999999999999999999999999865543322 578899999999999733 46666665443
No 93
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=7.6e-25 Score=216.60 Aligned_cols=292 Identities=15% Similarity=0.189 Sum_probs=179.9
Q ss_pred CcccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCc
Q psy13286 1 MVQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVH 76 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 76 (351)
||+++|||| .+.++..+...... +++|||+|+.+|+.|+.+.|+.+....+..+..+.+....... ......+
T Consensus 437 Ll~maTGSGKT~tai~li~~L~~~~~~-~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L~~~--~~~~~~~ 513 (1123)
T PRK11448 437 LLAMATGTGKTRTAIALMYRLLKAKRF-RRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIKGLEDK--FPEDETK 513 (1123)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhcCcc-CeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchhhhhhh--cccCCCC
Confidence 578999997 34455555544443 7999999999999999999887642222111111111111111 1123578
Q ss_pred EEEEccHHHHHHHhc-----cCcCCCCccEEEEcccccccCc---------------chHHHHHHHHHhCCCCCcEEEEE
Q psy13286 77 LIIATPGRILDLMDK-----QVANMDHCKILVLDEADKLLSQ---------------DFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 77 Ilv~Tp~~l~~~l~~-----~~~~~~~~~lvViDE~h~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
|+|+|.+++...+.. ....+..+++||+||||+.... ++...+..++..+. ...+++|
T Consensus 514 I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd--A~~IGLT 591 (1123)
T PRK11448 514 VHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD--AVKIGLT 591 (1123)
T ss_pred EEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC--ccEEEEe
Confidence 999999999765432 1134678999999999986420 11234555555442 4689999
Q ss_pred eeCcchHHHHHHH--------------hcC---CCeEEeeccc---cccCC---ceEE------E--EEcCcc-------
Q psy13286 137 ATFPLTVKNFMEK--------------HLK---DPYEINLMEE---LTLKG---VTQY------Y--AFVQER------- 178 (351)
Q Consensus 137 aT~~~~~~~~~~~--------------~~~---~~~~~~~~~~---~~~~~---~~~~------~--~~~~~~------- 178 (351)
|||......+... ++. .|..+...-. ..... +..+ . ......
T Consensus 592 ATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~ 671 (1123)
T PRK11448 592 ATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVED 671 (1123)
T ss_pred cCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHH
Confidence 9987543322211 111 0111111000 00000 0000 0 000000
Q ss_pred -cH-------H----HHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc------C---CeEEEeccCCCHHHHHHHHH
Q psy13286 179 -QK-------V----HCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL------G---YCCYYIHARMAQAHRNRVFH 237 (351)
Q Consensus 179 -~k-------~----~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~------~---~~~~~~~~~~~~~~r~~~~~ 237 (351)
.+ . ..+...+....++++||||.++++|+.+++.|... + ..+..++|+++ ++.++++
T Consensus 672 ~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~ 749 (1123)
T PRK11448 672 FNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIR 749 (1123)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHH
Confidence 00 0 11112222234579999999999999999988653 1 24566888875 4678999
Q ss_pred HhhcCCc-cEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCC--ceeEEEEecc
Q psy13286 238 DFRSGLC-RNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGH--LGIAINLITY 299 (351)
Q Consensus 238 ~f~~g~~-~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~--~~~~i~~~~~ 299 (351)
.|+++.. .|+|+++++..|+|+|.+.+||++.++.|...|+||+||+.|.-. ......+++.
T Consensus 750 ~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~ 814 (1123)
T PRK11448 750 RFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDA 814 (1123)
T ss_pred HHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEeh
Confidence 9999886 689999999999999999999999999999999999999999743 2334444443
No 94
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=2.1e-24 Score=203.54 Aligned_cols=296 Identities=15% Similarity=0.153 Sum_probs=207.6
Q ss_pred CcccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEE
Q psy13286 1 MVQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78 (351)
Q Consensus 1 ~~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Il 78 (351)
+.+++||.| +...+..+..+..+ ..+.||+|+..||.|..+|+..+...+|+++..+.++.+.... .....++|+
T Consensus 99 IaEm~TGEGKTL~a~lp~~l~al~g-~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r--~~~Y~~dI~ 175 (908)
T PRK13107 99 IAEMRTGEGKTLTATLPAYLNALTG-KGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEK--KAAYNADIT 175 (908)
T ss_pred cccccCCCCchHHHHHHHHHHHhcC-CCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHH--HhcCCCCeE
Confidence 357888886 44444444444443 5699999999999999999999999999999999998775433 223479999
Q ss_pred EEccHHH-HHHHhcc-CcCC-----CCccEEEEcccccccCcc----------------hHHHHH----HHHHh------
Q psy13286 79 IATPGRI-LDLMDKQ-VANM-----DHCKILVLDEADKLLSQD----------------FKGMLD----HVISI------ 125 (351)
Q Consensus 79 v~Tp~~l-~~~l~~~-~~~~-----~~~~lvViDE~h~~~~~~----------------~~~~~~----~~~~~------ 125 (351)
++||..+ +++|+.+ .... ..+.++||||+|.++-+. ....+. .+...
T Consensus 176 YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~ 255 (908)
T PRK13107 176 YGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTE 255 (908)
T ss_pred EeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhcccc
Confidence 9999999 8888877 3333 788999999999764311 001111 11100
Q ss_pred -------C--CC--------------------------------------------------------------------
Q psy13286 126 -------L--PH-------------------------------------------------------------------- 128 (351)
Q Consensus 126 -------~--~~-------------------------------------------------------------------- 128 (351)
+ ..
T Consensus 256 ~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~I 335 (908)
T PRK13107 256 EYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVII 335 (908)
T ss_pred ccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEE
Confidence 0 00
Q ss_pred ------------------------------------------------CCcEEEEEeeCcchHHHHHHHhcCCCeEEeec
Q psy13286 129 ------------------------------------------------ERQILLYSATFPLTVKNFMEKHLKDPYEINLM 160 (351)
Q Consensus 129 ------------------------------------------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 160 (351)
-.++.+||+|......++.+-|..+.+.+...
T Consensus 336 VDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTn 415 (908)
T PRK13107 336 VDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTN 415 (908)
T ss_pred EECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCC
Confidence 11233444444443334444333332222221
Q ss_pred cccccCCceEEEEEcCcccHHHHHHHHHh--hCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHH
Q psy13286 161 EELTLKGVTQYYAFVQERQKVHCLNTLFS--KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHD 238 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 238 (351)
........... .+.....|...+..-+. ...+.++||||.|++.++.++..|...++....+|+.++..++..+.+.
T Consensus 416 kp~~R~d~~d~-iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~A 494 (908)
T PRK13107 416 RPMVRKDMADL-VYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQA 494 (908)
T ss_pred CCccceeCCCc-EEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhC
Confidence 11111111111 22333566666665554 2357899999999999999999999999999999999999999999999
Q ss_pred hhcCCccEEEEeCcCCCCCCCCC-------------------------------------CCEEEEecCCCChhhHhhhc
Q psy13286 239 FRSGLCRNLVCSDLFTRGIDVQA-------------------------------------VNVVINFDFPKMAETYLHRI 281 (351)
Q Consensus 239 f~~g~~~ilv~T~~~~~G~di~~-------------------------------------~~~Vi~~~~p~s~~~~~q~~ 281 (351)
|++|. |+|||+++++|+||.= =-|||--..+.|..-=-|-.
T Consensus 495 g~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLr 572 (908)
T PRK13107 495 GRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLR 572 (908)
T ss_pred CCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhh
Confidence 99997 9999999999999861 12688777888877778999
Q ss_pred cccccCCCceeEEEEeccchH
Q psy13286 282 GRSGRYGHLGIAINLITYEDR 302 (351)
Q Consensus 282 GR~gR~~~~~~~i~~~~~~~~ 302 (351)
||+||.|.+|.+-.|++-+|.
T Consensus 573 GRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 573 GRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred cccccCCCCCceeEEEEeCcH
Confidence 999999999999999988764
No 95
>KOG0947|consensus
Probab=99.92 E-value=4.8e-24 Score=197.52 Aligned_cols=284 Identities=20% Similarity=0.240 Sum_probs=202.9
Q ss_pred cccccCC--cchhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEE
Q psy13286 2 VQARQEP--TQFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLII 79 (351)
Q Consensus 2 ~~a~tgs--~~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv 79 (351)
|.|.|-+ ++++-.+........ -|++|-.|-++|-+|-++.|++-..+.| .++|+... ...+.++|
T Consensus 317 VAAHTSAGKTvVAEYAialaq~h~-TR~iYTSPIKALSNQKfRDFk~tF~Dvg----LlTGDvqi-------nPeAsCLI 384 (1248)
T KOG0947|consen 317 VAAHTSAGKTVVAEYAIALAQKHM-TRTIYTSPIKALSNQKFRDFKETFGDVG----LLTGDVQI-------NPEASCLI 384 (1248)
T ss_pred EEecCCCCcchHHHHHHHHHHhhc-cceEecchhhhhccchHHHHHHhccccc----eeecceee-------CCCcceEe
Confidence 4456655 465554444444343 7999999999999999999988776544 77887743 34588999
Q ss_pred EccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcC-CCeEEe
Q psy13286 80 ATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLK-DPYEIN 158 (351)
Q Consensus 80 ~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~-~~~~~~ 158 (351)
+|.|.|..++-++.--.+++..||+||+|-+.+...+..+..++-.+|+..++|++|||.|.... ++....+ +...+.
T Consensus 385 MTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~~E-FA~WIGRtK~K~Iy 463 (1248)
T KOG0947|consen 385 MTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPNTLE-FADWIGRTKQKTIY 463 (1248)
T ss_pred ehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEEeccCCChHH-HHHHhhhccCceEE
Confidence 99999999998887778999999999999988888889999999999999999999999887643 3332211 111222
Q ss_pred eccc-cccCCceEEEEEcCc------------------------------------------------------------
Q psy13286 159 LMEE-LTLKGVTQYYAFVQE------------------------------------------------------------ 177 (351)
Q Consensus 159 ~~~~-~~~~~~~~~~~~~~~------------------------------------------------------------ 177 (351)
+... ..+.+..++.....+
T Consensus 464 ViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~ 543 (1248)
T KOG0947|consen 464 VISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGS 543 (1248)
T ss_pred EEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccc
Confidence 2111 111112222111100
Q ss_pred -----ccH---HHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc---------------------------------
Q psy13286 178 -----RQK---VHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL--------------------------------- 216 (351)
Q Consensus 178 -----~~k---~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~--------------------------------- 216 (351)
..+ +-.+...++...--|++|||-+++.|+..++.|...
T Consensus 544 ~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl 623 (1248)
T KOG0947|consen 544 GIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVL 623 (1248)
T ss_pred cccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHH
Confidence 000 122222333333458999999999999999999542
Q ss_pred ------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCC---------CChhhHhhhc
Q psy13286 217 ------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFP---------KMAETYLHRI 281 (351)
Q Consensus 217 ------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p---------~s~~~~~q~~ 281 (351)
..+++.+||++=+--++-+...|..|-++||.||.++.+|+|.|+-.+|+ -+.- ..+.+|.||+
T Consensus 624 ~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF-~Sl~KhDG~efR~L~PGEytQMA 702 (1248)
T KOG0947|consen 624 SMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVF-SSLRKHDGNEFRELLPGEYTQMA 702 (1248)
T ss_pred HHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEe-eehhhccCcceeecCChhHHhhh
Confidence 12577899999888888888999999999999999999999999765555 3322 3578999999
Q ss_pred cccccCCC--ceeEEEEecc
Q psy13286 282 GRSGRYGH--LGIAINLITY 299 (351)
Q Consensus 282 GR~gR~~~--~~~~i~~~~~ 299 (351)
|||||.|- .|.++++...
T Consensus 703 GRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 703 GRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred ccccccccCcCceEEEEecC
Confidence 99999985 4777766554
No 96
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.92 E-value=3.8e-23 Score=201.16 Aligned_cols=303 Identities=16% Similarity=0.181 Sum_probs=199.1
Q ss_pred cccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHH---HhCCCcEE
Q psy13286 4 ARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMR---IYQKVHLI 78 (351)
Q Consensus 4 a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~Il 78 (351)
+..|+| .+.++..+.......+.+|||||. +++.||.+.+++++. .+++..++|....+..... .....+|+
T Consensus 197 MGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVv 273 (1033)
T PLN03142 197 MGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVC 273 (1033)
T ss_pred CCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcc
Confidence 445555 355555554433444689999997 677889999988874 4677778887654433221 12468899
Q ss_pred EEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcch-HHHH-----------
Q psy13286 79 IATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLT-VKNF----------- 146 (351)
Q Consensus 79 v~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~-~~~~----------- 146 (351)
|+|++.+..... .+.-..+++||+||||++.+.. ......+..+.. ...+++|+||-.. +.++
T Consensus 274 ITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~--Sklskalr~L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~ 348 (1033)
T PLN03142 274 VTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNEN--SLLSKTMRLFST-NYRLLITGTPLQNNLHELWALLNFLLPEI 348 (1033)
T ss_pred eecHHHHHHHHH--HhccCCCCEEEEcCccccCCHH--HHHHHHHHHhhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCc
Confidence 999999865322 2223467899999999987754 234444555543 3468899997321 1111
Q ss_pred -------HHHhcC-----------------CCeEEeecc---ccccCCceEEEEE-------------------------
Q psy13286 147 -------MEKHLK-----------------DPYEINLME---ELTLKGVTQYYAF------------------------- 174 (351)
Q Consensus 147 -------~~~~~~-----------------~~~~~~~~~---~~~~~~~~~~~~~------------------------- 174 (351)
...+.. .|..+.... ....+........
T Consensus 349 f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g 428 (1033)
T PLN03142 349 FSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAG 428 (1033)
T ss_pred CCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 000000 000000000 0000000000000
Q ss_pred --------------------------------------cCcccHHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHH
Q psy13286 175 --------------------------------------VQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKIT 214 (351)
Q Consensus 175 --------------------------------------~~~~~k~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~~~L~ 214 (351)
+....|+..+..++... .+.++|||+........+.+.|.
T Consensus 429 ~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~ 508 (1033)
T PLN03142 429 GERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLM 508 (1033)
T ss_pred ccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHH
Confidence 01123444555555433 46799999999999999999999
Q ss_pred hcCCeEEEeccCCCHHHHHHHHHHhhcC---CccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCce
Q psy13286 215 ELGYCCYYIHARMAQAHRNRVFHDFRSG---LCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLG 291 (351)
Q Consensus 215 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~ 291 (351)
..++....++|+++..+|..+++.|+.. ...+|++|.+.+.|+|++.+++||+||++|++....|++||+.|.|+..
T Consensus 509 ~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk 588 (1033)
T PLN03142 509 YRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKK 588 (1033)
T ss_pred HcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCc
Confidence 9999999999999999999999999763 3467899999999999999999999999999999999999999999976
Q ss_pred eEEE--Eeccc--hHHHHHHHHHHhcc
Q psy13286 292 IAIN--LITYE--DRYALHRIEKELGT 314 (351)
Q Consensus 292 ~~i~--~~~~~--~~~~~~~l~~~l~~ 314 (351)
.|.+ |+..+ |...+....+.++.
T Consensus 589 ~V~VyRLIt~gTIEEkIlera~~Kl~L 615 (1033)
T PLN03142 589 EVQVFRFCTEYTIEEKVIERAYKKLAL 615 (1033)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 5443 44443 45555555555543
No 97
>KOG0948|consensus
Probab=99.91 E-value=5.5e-24 Score=192.71 Aligned_cols=280 Identities=20% Similarity=0.280 Sum_probs=203.3
Q ss_pred CCcchhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHH
Q psy13286 7 EPTQFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRIL 86 (351)
Q Consensus 7 gs~~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~ 86 (351)
|+++++-.+ |..+...+.|++|-.|-++|-+|-++.+..-.++ |...+|+..... .+..+|.|.|.|.
T Consensus 156 GKTVVAeYA-IA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~D----VGLMTGDVTInP-------~ASCLVMTTEILR 223 (1041)
T KOG0948|consen 156 GKTVVAEYA-IAMSLREKQRVIYTSPIKALSNQKYRELLEEFKD----VGLMTGDVTINP-------DASCLVMTTEILR 223 (1041)
T ss_pred CcchHHHHH-HHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcc----cceeecceeeCC-------CCceeeeHHHHHH
Confidence 334444333 2344445589999999999999999887655543 556677765322 3678999999999
Q ss_pred HHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHh---cCCCeEEeecccc
Q psy13286 87 DLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKH---LKDPYEINLMEEL 163 (351)
Q Consensus 87 ~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~---~~~~~~~~~~~~~ 163 (351)
.++-++..-+..+..||+||+|-|-+...+-.+...+-.+|.+.+.+++|||+|.... |+++. -.-|+.+ +.-..
T Consensus 224 sMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPNA~q-FAeWI~~ihkQPcHV-VYTdy 301 (1041)
T KOG0948|consen 224 SMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPNARQ-FAEWICHIHKQPCHV-VYTDY 301 (1041)
T ss_pred HHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccCCCHHH-HHHHHHHHhcCCceE-EeecC
Confidence 9998888888999999999999999998888888989999999999999999998754 44332 2234333 22333
Q ss_pred ccCCceEE---------EEEcCccc-----HHH--------------------------------------HHHHHHhhC
Q psy13286 164 TLKGVTQY---------YAFVQERQ-----KVH--------------------------------------CLNTLFSKL 191 (351)
Q Consensus 164 ~~~~~~~~---------~~~~~~~~-----k~~--------------------------------------~l~~~l~~~ 191 (351)
.+.+..|+ |..+++.. ... .+...+-..
T Consensus 302 RPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~ 381 (1041)
T KOG0948|consen 302 RPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMER 381 (1041)
T ss_pred CCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhh
Confidence 33334444 22222211 111 112222233
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc---------------------------------------CCeEEEeccCCCHHHH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL---------------------------------------GYCCYYIHARMAQAHR 232 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~---------------------------------------~~~~~~~~~~~~~~~r 232 (351)
...++|||+-++++|+.+|-.+.+. ..++.++|+|+-+--+
T Consensus 382 ~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlK 461 (1041)
T KOG0948|consen 382 NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILK 461 (1041)
T ss_pred cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHH
Confidence 3458999999999999998888552 1256788999988888
Q ss_pred HHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEe----cCC----CChhhHhhhccccccCCCc--eeEEEEeccc
Q psy13286 233 NRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINF----DFP----KMAETYLHRIGRSGRYGHL--GIAINLITYE 300 (351)
Q Consensus 233 ~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~----~~p----~s~~~~~q~~GR~gR~~~~--~~~i~~~~~~ 300 (351)
+-+.-.|.+|-+++|.||.+++.|+|.|+-++|+-. |-. .|..+|+||.|||||.|.+ |.||+.+++.
T Consensus 462 E~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 462 EVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred HHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 888899999999999999999999999987766632 211 2467899999999999864 8888888864
No 98
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=3.5e-23 Score=198.06 Aligned_cols=288 Identities=19% Similarity=0.191 Sum_probs=204.7
Q ss_pred CcccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEE
Q psy13286 1 MVQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78 (351)
Q Consensus 1 ~~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Il 78 (351)
+|+|||||| +++..+.-. +...+.+++|.+|.++|.+|.+..+........--+..++|+.. +..++.++
T Consensus 138 lV~ApTssGKTvVaeyAi~~-al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~-------IN~~A~cl 209 (1041)
T COG4581 138 LVCAPTSSGKTVVAEYAIAL-ALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVS-------INPDAPCL 209 (1041)
T ss_pred EEEccCCCCcchHHHHHHHH-HHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceeccee-------eCCCCceE
Confidence 589999996 555444433 33334679999999999999998886665433223466677664 34468899
Q ss_pred EEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc-CCCeEE
Q psy13286 79 IATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL-KDPYEI 157 (351)
Q Consensus 79 v~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~-~~~~~~ 157 (351)
|.|.|.|..++.++...+..+..||+||+|.+.+...+..+...+-.+|...+++++|||.+.......+--. +.....
T Consensus 210 vMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~ 289 (1041)
T COG4581 210 VMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIH 289 (1041)
T ss_pred EeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeE
Confidence 9999999999988888899999999999999999988899999999999999999999999876543222211 111111
Q ss_pred eeccccccCCceEEEEEc-------CcccH-----------------------------------------------HHH
Q psy13286 158 NLMEELTLKGVTQYYAFV-------QERQK-----------------------------------------------VHC 183 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~-------~~~~k-----------------------------------------------~~~ 183 (351)
.+.....+.+..+++... +...+ ...
T Consensus 290 vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 369 (1041)
T COG4581 290 VVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPE 369 (1041)
T ss_pred EEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchH
Confidence 122223333333332211 11100 011
Q ss_pred HHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc----------------------------C-------------CeEEE
Q psy13286 184 LNTLFSKLQINQSIIFCNSTQRVELLAKKITEL----------------------------G-------------YCCYY 222 (351)
Q Consensus 184 l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~----------------------------~-------------~~~~~ 222 (351)
+...+...+.-++|+|+-++..|+..+..+... + .++..
T Consensus 370 iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiav 449 (1041)
T COG4581 370 IVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAV 449 (1041)
T ss_pred HHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhh
Confidence 222222334458999999999998887777420 1 13568
Q ss_pred eccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEE----ec----CCCChhhHhhhccccccCCCc--ee
Q psy13286 223 IHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVIN----FD----FPKMAETYLHRIGRSGRYGHL--GI 292 (351)
Q Consensus 223 ~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~----~~----~p~s~~~~~q~~GR~gR~~~~--~~ 292 (351)
+|+++=+..+..+.+.|..|-..++.+|.+++.|+|.|.-++|+- ++ ...++.+|.|+.|||||.|.+ |.
T Consensus 450 HH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~ 529 (1041)
T COG4581 450 HHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGT 529 (1041)
T ss_pred hccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccce
Confidence 899999999999999999999999999999999999997665551 22 135689999999999999876 55
Q ss_pred EEEE
Q psy13286 293 AINL 296 (351)
Q Consensus 293 ~i~~ 296 (351)
+++.
T Consensus 530 vI~~ 533 (1041)
T COG4581 530 VIVI 533 (1041)
T ss_pred EEEe
Confidence 6555
No 99
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=7.5e-22 Score=186.72 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=97.1
Q ss_pred ccHHHHHHHHHh--hCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCC
Q psy13286 178 RQKVHCLNTLFS--KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTR 255 (351)
Q Consensus 178 ~~k~~~l~~~l~--~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~ 255 (351)
..|...+..-+. ...+.|+||-|.|.+..+.++..|...++....++..-...+-.-+.+.-+.| .|.|||+++++
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~~g--~VTIATNmAGR 628 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKLG--AVTVATNMAGR 628 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHhcCCCC--cEEEeeccccC
Confidence 456666555443 23577899999999999999999999999988888864444433344433334 78999999999
Q ss_pred CCCCCC--------CCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchH
Q psy13286 256 GIDVQA--------VNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDR 302 (351)
Q Consensus 256 G~di~~--------~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~ 302 (351)
|.||.- =-|||.-..|.|..--.|-.||+||.|.+|.+..|++-+|.
T Consensus 629 GTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 629 GTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred CcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchH
Confidence 999851 12788888999999999999999999999999999988764
No 100
>KOG0950|consensus
Probab=99.90 E-value=7.2e-23 Score=190.62 Aligned_cols=300 Identities=19% Similarity=0.235 Sum_probs=206.4
Q ss_pred cccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEc
Q psy13286 4 ARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIAT 81 (351)
Q Consensus 4 a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~T 81 (351)
+||+.| +++-+-++..-...+..++.+.|..+.+.+-...+..+....|+.+....|..+.... .+.-.+.|+|
T Consensus 247 ~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~t 322 (1008)
T KOG0950|consen 247 LPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIAT 322 (1008)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeee
Confidence 567664 5555555544445557899999999999999999999999999999888876654332 2346799999
Q ss_pred cHHHHHHHhc--cCcCCCCccEEEEcccccccCcchHHHHHHHHHhC-----CCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 82 PGRILDLMDK--QVANMDHCKILVLDEADKLLSQDFKGMLDHVISIL-----PHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 82 p~~l~~~l~~--~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~-----~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
.|+-+.+..+ ..-.+..+++||+||.|++.+.+.+..+..++.+. ....|++++|||+++. ..++.++...
T Consensus 323 iEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~ 400 (1008)
T KOG0950|consen 323 IEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAF 400 (1008)
T ss_pred hHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhh
Confidence 9998665433 12246788999999999999988777776665543 2336799999998753 2233333322
Q ss_pred eEEeeccccccC---CceEEEEEcCcccHH----------------HHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHH
Q psy13286 155 YEINLMEELTLK---GVTQYYAFVQERQKV----------------HCLNTLFSK--LQINQSIIFCNSTQRVELLAKKI 213 (351)
Q Consensus 155 ~~~~~~~~~~~~---~~~~~~~~~~~~~k~----------------~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L 213 (351)
....-....... ..........+.... +.+..++.+ .++.++||||+++..|+.+|..+
T Consensus 401 ~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~ 480 (1008)
T KOG0950|consen 401 VYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLI 480 (1008)
T ss_pred heecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHH
Confidence 221111110000 000111111010001 122222221 12346999999999999988776
Q ss_pred Hh--------------------------------------cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCC
Q psy13286 214 TE--------------------------------------LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTR 255 (351)
Q Consensus 214 ~~--------------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~ 255 (351)
.. ..++++++|.+++.++|+.+...|+.|...|++||+.+..
T Consensus 481 ~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaa 560 (1008)
T KOG0950|consen 481 AKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAA 560 (1008)
T ss_pred HHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhc
Confidence 43 1346899999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEec----CCCChhhHhhhccccccCCCc--eeEEEEeccchHHHHHHHH
Q psy13286 256 GIDVQAVNVVINFD----FPKMAETYLHRIGRSGRYGHL--GIAINLITYEDRYALHRIE 309 (351)
Q Consensus 256 G~di~~~~~Vi~~~----~p~s~~~~~q~~GR~gR~~~~--~~~i~~~~~~~~~~~~~l~ 309 (351)
|+|+|..++++-+- ...+..+|.||+|||||.|-+ |.+++++...|......+.
T Consensus 561 GVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv 620 (1008)
T KOG0950|consen 561 GVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELV 620 (1008)
T ss_pred cCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHH
Confidence 99999887776433 235678999999999999764 8899999988876655443
No 101
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.88 E-value=9.3e-22 Score=162.55 Aligned_cols=157 Identities=39% Similarity=0.683 Sum_probs=137.2
Q ss_pred CcccccCCc-----chhhhcccCcCC-CCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAK-ITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
++++|||+| ++|++..+.... ..+++++|++|+++|+.|+...++++....++++..+.|+.........+..+
T Consensus 40 li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (203)
T cd00268 40 IGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRG 119 (203)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCC
Confidence 578999997 677777776652 33489999999999999999999999988889999999998876666666568
Q ss_pred CcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 75 VHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
++|+|+||+.+.+.+.+....+.+++++|+||+|.+.+.++...+..+...++..++++++|||+++....++..++.++
T Consensus 120 ~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~ 199 (203)
T cd00268 120 PHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNP 199 (203)
T ss_pred CCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCC
Confidence 99999999999999988888889999999999999988888999999999998899999999999999999998888887
Q ss_pred eEE
Q psy13286 155 YEI 157 (351)
Q Consensus 155 ~~~ 157 (351)
..+
T Consensus 200 ~~~ 202 (203)
T cd00268 200 VRI 202 (203)
T ss_pred EEe
Confidence 654
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=9.2e-22 Score=189.76 Aligned_cols=295 Identities=18% Similarity=0.183 Sum_probs=188.3
Q ss_pred cccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHH------
Q psy13286 2 VQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMR------ 70 (351)
Q Consensus 2 ~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------ 70 (351)
+.||||.| +.+++..+........+.+++.|++.+++++++.++++....+......++.....-....
T Consensus 219 l~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 298 (733)
T COG1203 219 LEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILL 298 (733)
T ss_pred EEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhccccccce
Confidence 68999997 3333333322122458999999999999999999998876655443323333221100000
Q ss_pred --------HhCCCcEEEEccHHHHHHHhcc-CcC---CCCccEEEEcccccccCcchHHHHHH-HHHhCCCCCcEEEEEe
Q psy13286 71 --------IYQKVHLIIATPGRILDLMDKQ-VAN---MDHCKILVLDEADKLLSQDFKGMLDH-VISILPHERQILLYSA 137 (351)
Q Consensus 71 --------~~~~~~Ilv~Tp~~l~~~l~~~-~~~---~~~~~lvViDE~h~~~~~~~~~~~~~-~~~~~~~~~~~i~~Sa 137 (351)
......+.++||..+....... ... .-..+++|+||+|.+........+.. +.........++++||
T Consensus 299 ~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SA 378 (733)
T COG1203 299 TLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSA 378 (733)
T ss_pred eEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEec
Confidence 0012345555555554421111 111 01336899999998777632323333 3333334667999999
Q ss_pred eCcchHHHHHHHhcCCCeEEeeccccc----cCCceEEEEEcCcccH--HHHHHHHH-hhCCCCcEEEEeCchHHHHHHH
Q psy13286 138 TFPLTVKNFMEKHLKDPYEINLMEELT----LKGVTQYYAFVQERQK--VHCLNTLF-SKLQINQSIIFCNSTQRVELLA 210 (351)
Q Consensus 138 T~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~k--~~~l~~~l-~~~~~~~~lIf~~~~~~~~~l~ 210 (351)
|+|+.....+.....+...+....... ......... ...... ........ ...++.+++|.|||+..|.+++
T Consensus 379 TlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y 457 (733)
T COG1203 379 TLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKER-VDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELY 457 (733)
T ss_pred CCCHHHHHHHHHHHhcccceeccccccccccccccccccc-hhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHH
Confidence 999999998888776654443332211 111111100 000011 01122222 2334678999999999999999
Q ss_pred HHHHhcCCeEEEeccCCCHHHHHHHHHHhh----cCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhcccccc
Q psy13286 211 KKITELGYCCYYIHARMAQAHRNRVFHDFR----SGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGR 286 (351)
Q Consensus 211 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR 286 (351)
+.|+..+..+..+|+.+...+|.+.++.+. .+...|+|||++++.|+|+. .+.+|--=.| .++.+||+||++|
T Consensus 458 ~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe~aP--idSLIQR~GRv~R 534 (733)
T COG1203 458 EKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITELAP--IDSLIQRAGRVNR 534 (733)
T ss_pred HHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeecCCC--HHHHHHHHHHHhh
Confidence 999998878999999999999998777544 46789999999999999994 6666655555 8899999999999
Q ss_pred CC--CceeEEEEeccc
Q psy13286 287 YG--HLGIAINLITYE 300 (351)
Q Consensus 287 ~~--~~~~~i~~~~~~ 300 (351)
.| ..|..+++...+
T Consensus 535 ~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 535 HGKKENGKIYVYNDEE 550 (733)
T ss_pred cccccCCceeEeeccc
Confidence 99 677888776654
No 103
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=4.4e-21 Score=182.05 Aligned_cols=126 Identities=17% Similarity=0.214 Sum_probs=112.1
Q ss_pred CcccHHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcC
Q psy13286 176 QERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLF 253 (351)
Q Consensus 176 ~~~~k~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~ 253 (351)
...+|...+...+... .+.++||||+|++.++.+++.|+..+++...+|+ .+.+|+..+..|+.+...|+|||+++
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMA 656 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMA 656 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCc
Confidence 3456888888888543 6789999999999999999999999999999997 67899999999999999999999999
Q ss_pred CCCCCCC---CCC-----EEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHH
Q psy13286 254 TRGIDVQ---AVN-----VVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRY 303 (351)
Q Consensus 254 ~~G~di~---~~~-----~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~ 303 (351)
++|+||+ .+. +||....|.|...|.|+.||+||.|.+|.++.|++.+|.-
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 9999999 443 4588889999999999999999999999999999987743
No 104
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.88 E-value=7.9e-21 Score=180.78 Aligned_cols=288 Identities=15% Similarity=0.187 Sum_probs=199.9
Q ss_pred CcccccCCcchhhhcccCc--CCCCCceEEEEcCCHHHHHHHHHHHHHHHhh-CCceEEEEECCcchHHHHHHHhCCCcE
Q psy13286 1 MVQARQEPTQFLYLNKLTP--AKITSKATLIIVPTRELALQTSQICIELAKH-LNVKVMVTTGGTNLRDDIMRIYQKVHL 77 (351)
Q Consensus 1 ~~~a~tgs~~l~~l~~l~~--~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~I 77 (351)
+|.++||||..+.+..... ....++++.+.-|.|--|..++..+.+-... .|-.|....-..+ .......|
T Consensus 69 ii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~------~~s~~Tri 142 (845)
T COG1643 69 IIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFES------KVSPRTRI 142 (845)
T ss_pred EEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeec------cCCCCcee
Confidence 4789999973333322221 1134478999999997776666554333322 2333333322222 11235789
Q ss_pred EEEccHHHHHHHhccCcCCCCccEEEEccccc-ccCcchH-HHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCe
Q psy13286 78 IIATPGRILDLMDKQVANMDHCKILVLDEADK-LLSQDFK-GMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPY 155 (351)
Q Consensus 78 lv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~-~~~~~~~-~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 155 (351)
-+.|.+.|++.+.+... ++.+++||+||+|. .++-++. ..++.++...+...+++.||||+... .+..++.+.-
T Consensus 143 k~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~---rfs~~f~~ap 218 (845)
T COG1643 143 KVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAE---RFSAYFGNAP 218 (845)
T ss_pred EEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHH---HHHHHcCCCC
Confidence 99999999998877765 89999999999994 2333333 33445566666678999999998843 4455555544
Q ss_pred EEeeccccccCCceEEEEEcC-ccc-HHHHHHHHH---hhCCCCcEEEEeCchHHHHHHHHHHHh----cCCeEEEeccC
Q psy13286 156 EINLMEELTLKGVTQYYAFVQ-ERQ-KVHCLNTLF---SKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHAR 226 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~-~~~-k~~~l~~~l---~~~~~~~~lIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~ 226 (351)
.+.+.. ...++...|.... .+. ....+...+ ...+.+.+|||.+..++.+.+++.|.+ ....+..+||.
T Consensus 219 vi~i~G--R~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~ 296 (845)
T COG1643 219 VIEIEG--RTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGA 296 (845)
T ss_pred EEEecC--CccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeecccc
Confidence 444432 2333444443222 222 233333333 334578899999999999999999998 34778999999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecC------------------CCChhhHhhhccccccCC
Q psy13286 227 MAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDF------------------PKMAETYLHRIGRSGRYG 288 (351)
Q Consensus 227 ~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~------------------p~s~~~~~q~~GR~gR~~ 288 (351)
++.+++.++++---.|+.+|+++|++.+-++.||++..||.-+. |.|-++..||.|||||.
T Consensus 297 L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~- 375 (845)
T COG1643 297 LSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT- 375 (845)
T ss_pred CCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC-
Confidence 99999999888777787779999999999999999999997554 34678899999999998
Q ss_pred CceeEEEEeccch
Q psy13286 289 HLGIAINLITYED 301 (351)
Q Consensus 289 ~~~~~i~~~~~~~ 301 (351)
.+|.||-++++++
T Consensus 376 ~pGicyRLyse~~ 388 (845)
T COG1643 376 GPGICYRLYSEED 388 (845)
T ss_pred CCceEEEecCHHH
Confidence 6699999998744
No 105
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.86 E-value=6.6e-20 Score=172.11 Aligned_cols=255 Identities=21% Similarity=0.256 Sum_probs=173.1
Q ss_pred cccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCC-ceEEE-EECCcchHH---HHHHHhC-
Q psy13286 2 VQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLN-VKVMV-TTGGTNLRD---DIMRIYQ- 73 (351)
Q Consensus 2 ~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~v~~-~~~~~~~~~---~~~~~~~- 73 (351)
+.||||.| .+.++..+..+..+ +++++++||..|+.|.++.+++|+...+ ..+.. +|+..+..+ .+..+.+
T Consensus 102 iiAPTGvGKTTfg~~~sl~~a~kg-kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~g 180 (1187)
T COG1110 102 IIAPTGVGKTTFGLLMSLYLAKKG-KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESG 180 (1187)
T ss_pred EEcCCCCchhHHHHHHHHHHHhcC-CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcC
Confidence 46899996 44455555555454 8999999999999999999999998776 44433 556544332 2344443
Q ss_pred CCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcc-----------hHHH-------HHHHHH-----------
Q psy13286 74 KVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQD-----------FKGM-------LDHVIS----------- 124 (351)
Q Consensus 74 ~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~-----------~~~~-------~~~~~~----------- 124 (351)
+.+|+|+|.+-|.+.+..-. ..+|+++++|++|.++..+ |... +..+..
T Consensus 181 dfdIlitTs~FL~k~~e~L~--~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~ 258 (1187)
T COG1110 181 DFDILITTSQFLSKRFEELS--KLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERV 258 (1187)
T ss_pred CccEEEEeHHHHHhhHHHhc--ccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 69999999998876654321 2578999999999765421 1111 001111
Q ss_pred -------------hCCCCCcEEEEEeeCcchH-HHHHHHhcCCCeEEeec-cccccCCceEEEEEcCcccHHHHHHHHHh
Q psy13286 125 -------------ILPHERQILLYSATFPLTV-KNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFS 189 (351)
Q Consensus 125 -------------~~~~~~~~i~~SaT~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 189 (351)
.-.+..++++.|||..+.- +..+-..+.+ +.+. ......++...|... .-...+..+++
T Consensus 259 ~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg---FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk 332 (1187)
T COG1110 259 REELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG---FEVGSGGEGLRNIVDIYVES---ESLEKVVELVK 332 (1187)
T ss_pred HHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC---CccCccchhhhheeeeeccC---ccHHHHHHHHH
Confidence 1124568999999986543 2222222211 1111 122333444444433 44455556666
Q ss_pred hCCCCcEEEEeCc---hHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC----cCCCCCCCCC-
Q psy13286 190 KLQINQSIIFCNS---TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD----LFTRGIDVQA- 261 (351)
Q Consensus 190 ~~~~~~~lIf~~~---~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~----~~~~G~di~~- 261 (351)
.... ..|||++. ++.++.+++.|++.|+++..+|+. ..+.++.|..|++++||+.. .+.+|+|+|.
T Consensus 333 ~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~r 406 (1187)
T COG1110 333 KLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHR 406 (1187)
T ss_pred HhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhh
Confidence 6553 68999999 899999999999999999999883 26679999999999999874 7899999996
Q ss_pred CCEEEEecCC
Q psy13286 262 VNVVINFDFP 271 (351)
Q Consensus 262 ~~~Vi~~~~p 271 (351)
++.+|+++.|
T Consensus 407 irYaIF~GvP 416 (1187)
T COG1110 407 IRYAVFYGVP 416 (1187)
T ss_pred eeEEEEecCC
Confidence 6789999998
No 106
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.7e-19 Score=166.83 Aligned_cols=295 Identities=14% Similarity=0.110 Sum_probs=204.2
Q ss_pred cccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEE
Q psy13286 2 VQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLII 79 (351)
Q Consensus 2 ~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv 79 (351)
.+++||.| +.+.+.....+..+ +.+-+++|+.-||.|-++++..+...+|+++..+.++.+..+.... ..++|+.
T Consensus 96 aEM~TGEGKTLvA~l~a~l~AL~G-~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~a--Y~~DItY 172 (764)
T PRK12326 96 IEMATGEGKTLAGAIAAAGYALQG-RRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAA--YACDVTY 172 (764)
T ss_pred ccccCCCCHHHHHHHHHHHHHHcC-CCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHH--HcCCCEE
Confidence 57899996 66666665555554 7899999999999999999999999999999999888765544332 3699999
Q ss_pred EccHHH-HHHHhccCc------CCCCccEEEEcccccccCc---------------chHHHHHHHHHhCCC---------
Q psy13286 80 ATPGRI-LDLMDKQVA------NMDHCKILVLDEADKLLSQ---------------DFKGMLDHVISILPH--------- 128 (351)
Q Consensus 80 ~Tp~~l-~~~l~~~~~------~~~~~~lvViDE~h~~~~~---------------~~~~~~~~~~~~~~~--------- 128 (351)
+|...+ +++|+.+.. ....+.+.||||+|.++-+ .....+..+...+..
T Consensus 173 gTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~ 252 (764)
T PRK12326 173 ASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDD 252 (764)
T ss_pred cCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcC
Confidence 999998 556665432 2367889999999965310 000111111111100
Q ss_pred --------------------------------------------------------------------------------
Q psy13286 129 -------------------------------------------------------------------------------- 128 (351)
Q Consensus 129 -------------------------------------------------------------------------------- 128 (351)
T Consensus 253 ~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLH 332 (764)
T PRK12326 253 GRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQ 332 (764)
T ss_pred CCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHH
Confidence
Q ss_pred -----------------------------CCcEEEEEeeCcchHHHHHHHhcCCCeEEeeccccccCCceEEEEEcCccc
Q psy13286 129 -----------------------------ERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQ 179 (351)
Q Consensus 129 -----------------------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (351)
-..+.+||+|......++.+-|..+.+.+............. ..+.....
T Consensus 333 QaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d-~iy~t~~~ 411 (764)
T PRK12326 333 AAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEAD-RVYATAAE 411 (764)
T ss_pred HHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCC-ceEeCHHH
Confidence 124567777766655555555544422222222211111111 22333445
Q ss_pred HHHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCC
Q psy13286 180 KVHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGI 257 (351)
Q Consensus 180 k~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~ 257 (351)
|...+..-+.. ..+.|+||.|.|.+..+.+++.|.+.+++...++..-...+-.-+.+.-+.| .|.|||+++++|.
T Consensus 412 k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRGT 489 (764)
T PRK12326 412 KNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRGT 489 (764)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCcc
Confidence 66666655432 3578999999999999999999999999999998875544433344444444 7899999999999
Q ss_pred CCCC---------------CCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchH
Q psy13286 258 DVQA---------------VNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDR 302 (351)
Q Consensus 258 di~~---------------~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~ 302 (351)
||.- =-|||--..+.|..--.|-.||+||.|.+|.+-.|++-+|.
T Consensus 490 DIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 490 DIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred CeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 9862 12788888899988889999999999999999999988773
No 107
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.85 E-value=1.2e-19 Score=171.52 Aligned_cols=150 Identities=21% Similarity=0.299 Sum_probs=127.8
Q ss_pred cHHHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCC
Q psy13286 179 QKVHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRG 256 (351)
Q Consensus 179 ~k~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G 256 (351)
.+.+.+...+.. ..+.+++|||++++.++.+++.|...++.+..+|++++..+|.++++.|+.|+..|+|||+.+.+|
T Consensus 426 ~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 426 GQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred chHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 344444444432 346789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEec-----CCCChhhHhhhccccccCCCceeEEEEeccch---------HHHHHHHHHHhccccCCCCcc
Q psy13286 257 IDVQAVNVVINFD-----FPKMAETYLHRIGRSGRYGHLGIAINLITYED---------RYALHRIEKELGTEIKSIPKV 322 (351)
Q Consensus 257 ~di~~~~~Vi~~~-----~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~---------~~~~~~l~~~l~~~~~~~~~~ 322 (351)
+|+|++++|++++ .|.+..+|+||+||+||. ..|.++++++..+ ...-++++..++.....+|..
T Consensus 506 fDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~~~~~~iq~~~~~~~~~~p~~ 584 (655)
T TIGR00631 506 LDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEETERRRKIQMAYNEEHGITPQT 584 (655)
T ss_pred eeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHHHhHHHHHhhhhhhcCCCCcc
Confidence 9999999999988 799999999999999998 6799999998753 223455666788888888888
Q ss_pred ccccccc
Q psy13286 323 IDPALYV 329 (351)
Q Consensus 323 ~~~~~~~ 329 (351)
+.+.+..
T Consensus 585 ~~~~~~~ 591 (655)
T TIGR00631 585 IRKPIRD 591 (655)
T ss_pred cCcchHH
Confidence 8766544
No 108
>KOG0385|consensus
Probab=99.84 E-value=1.8e-19 Score=164.22 Aligned_cols=304 Identities=20% Similarity=0.213 Sum_probs=206.2
Q ss_pred cccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHH---hCCCcEE
Q psy13286 4 ARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRI---YQKVHLI 78 (351)
Q Consensus 4 a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~Il 78 (351)
+.=|.+ .+.+|..+..-.+-.+.-||++|...|- .|...+++|+. ++++..++|+...+..+..- ....+|+
T Consensus 195 MGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~-NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~ 271 (971)
T KOG0385|consen 195 MGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLD-NWMNEFKRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVC 271 (971)
T ss_pred cccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHH-HHHHHHHHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceE
Confidence 334554 4556666655444446789999997774 56666666654 68899999998766654432 2368999
Q ss_pred EEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHH-------------
Q psy13286 79 IATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKN------------- 145 (351)
Q Consensus 79 v~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~------------- 145 (351)
|+|++...+- ...+.-..+.++||||+|++.+.. +.+..+++.+.... .+++|+||-.....
T Consensus 272 iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdi 346 (971)
T KOG0385|consen 272 ITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLSKILREFKTDN-RLLLTGTPLQNNLHELWALLNFLLPDI 346 (971)
T ss_pred eehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHHHHHHHhcccc-eeEeeCCcccccHHHHHHHHHhhchhh
Confidence 9999999653 112223466899999999998876 44556666664443 56678885211100
Q ss_pred ------HHHHh---------------------------------------------------------------------
Q psy13286 146 ------FMEKH--------------------------------------------------------------------- 150 (351)
Q Consensus 146 ------~~~~~--------------------------------------------------------------------- 150 (351)
+-..+
T Consensus 347 F~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~ 426 (971)
T KOG0385|consen 347 FNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGE 426 (971)
T ss_pred ccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhccc
Confidence 00000
Q ss_pred ------------------cCCCeEEeeccccccCCceEEEEEcCcccHHHHHHHHHhhC--CCCcEEEEeCchHHHHHHH
Q psy13286 151 ------------------LKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLA 210 (351)
Q Consensus 151 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~ 210 (351)
+..|+.+.-.+. .++..-.-..+....|+..|..++... .+.++|||........-+-
T Consensus 427 ~~~~k~kL~NI~mQLRKccnHPYLF~g~eP--g~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILe 504 (971)
T KOG0385|consen 427 GKGEKTKLQNIMMQLRKCCNHPYLFDGAEP--GPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILE 504 (971)
T ss_pred ccchhhHHHHHHHHHHHhcCCccccCCCCC--CCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHH
Confidence 000000000000 000000011111245667777777643 4789999999998888888
Q ss_pred HHHHhcCCeEEEeccCCCHHHHHHHHHHhhcC---CccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccC
Q psy13286 211 KKITELGYCCYYIHARMAQAHRNRVFHDFRSG---LCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRY 287 (351)
Q Consensus 211 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~ 287 (351)
.+..-+++..+.+.|.++.++|...++.|+.. +.-+|++|.+.+.|+|+..++.||.||..|+|..=+|.+.||+|.
T Consensus 505 Dyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRI 584 (971)
T KOG0385|consen 505 DYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRI 584 (971)
T ss_pred HHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhh
Confidence 88888899999999999999999999999874 356789999999999999999999999999999999999999999
Q ss_pred CCceeEEE--Eeccc--hHHHHHHHHHHhccccC
Q psy13286 288 GHLGIAIN--LITYE--DRYALHRIEKELGTEIK 317 (351)
Q Consensus 288 ~~~~~~i~--~~~~~--~~~~~~~l~~~l~~~~~ 317 (351)
|+...+.+ ++.++ +...+++-...+..+.-
T Consensus 585 GQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~ 618 (971)
T KOG0385|consen 585 GQKKPVVVYRLITENTVEEKIVERAAAKLRLDKL 618 (971)
T ss_pred CCcCceEEEEEeccchHHHHHHHHHHHHhchhhh
Confidence 98765544 56554 45556666666555433
No 109
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.84 E-value=4.7e-20 Score=170.38 Aligned_cols=284 Identities=14% Similarity=0.182 Sum_probs=183.7
Q ss_pred CcccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCc
Q psy13286 1 MVQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVH 76 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 76 (351)
||+|+||+| +++++.+|...... +++|+|+-+++|+.|.++.+..+.... -.+..+.+... ...++
T Consensus 189 LlvMATGTGKTrTAiaii~rL~r~~~~-KRVLFLaDR~~Lv~QA~~af~~~~P~~-~~~n~i~~~~~--------~~s~~ 258 (875)
T COG4096 189 LLVMATGTGKTRTAIAIIDRLIKSGWV-KRVLFLADRNALVDQAYGAFEDFLPFG-TKMNKIEDKKG--------DTSSE 258 (875)
T ss_pred EEEEecCCCcceeHHHHHHHHHhcchh-heeeEEechHHHHHHHHHHHHHhCCCc-cceeeeecccC--------Cccee
Confidence 688999996 88888888888776 999999999999999999988886542 22222222221 11479
Q ss_pred EEEEccHHHHHHHhcc-----CcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc
Q psy13286 77 LIIATPGRILDLMDKQ-----VANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL 151 (351)
Q Consensus 77 Ilv~Tp~~l~~~l~~~-----~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 151 (351)
|.++|.+.+....... .+....||+|||||||+-....+...+..+-+. .+++|||+......---.++
T Consensus 259 i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~dYFdA~------~~gLTATP~~~~d~~T~~~F 332 (875)
T COG4096 259 IYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSILDYFDAA------TQGLTATPKETIDRSTYGFF 332 (875)
T ss_pred EEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhHHHHHHHHHH------HHhhccCccccccccccccc
Confidence 9999999998877654 234567999999999986665555444444333 35569998664332222222
Q ss_pred -CCCeE------------------Eeecccc-----ccCCc--------------eEEEEEcC----------cccHHHH
Q psy13286 152 -KDPYE------------------INLMEEL-----TLKGV--------------TQYYAFVQ----------ERQKVHC 183 (351)
Q Consensus 152 -~~~~~------------------~~~~~~~-----~~~~~--------------~~~~~~~~----------~~~k~~~ 183 (351)
+.|.. +.+.-.. .+... .+.+.... .+.-...
T Consensus 333 ~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~ 412 (875)
T COG4096 333 NGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARE 412 (875)
T ss_pred CCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHH
Confidence 22221 1111000 00000 00000000 0011223
Q ss_pred HHHHHhh--CC--CCcEEEEeCchHHHHHHHHHHHhc-----CCeEEEeccCCCHHHHHHHHHHhhc--CCccEEEEeCc
Q psy13286 184 LNTLFSK--LQ--INQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLVCSDL 252 (351)
Q Consensus 184 l~~~l~~--~~--~~~~lIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~ilv~T~~ 252 (351)
+...+.. .. .+++||||.+..+|+.+...|... +--+..+.++-... ...++.|.. --.+|.|+.++
T Consensus 413 ~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~Iaitvdl 490 (875)
T COG4096 413 LTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDL 490 (875)
T ss_pred HHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhh
Confidence 3334433 22 468999999999999999999775 34466777765443 334555543 34678888899
Q ss_pred CCCCCCCCCCCEEEEecCCCChhhHhhhccccccC-------CCceeEEEEeccchH
Q psy13286 253 FTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRY-------GHLGIAINLITYEDR 302 (351)
Q Consensus 253 ~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~-------~~~~~~i~~~~~~~~ 302 (351)
+.-|+|+|.|.+++++..-.|...|.||+||+-|. ++....+.+++..+.
T Consensus 491 L~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~~ 547 (875)
T COG4096 491 LTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVDN 547 (875)
T ss_pred hhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhhhh
Confidence 99999999999999999999999999999999885 223445556655443
No 110
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.84 E-value=1.2e-19 Score=172.80 Aligned_cols=149 Identities=22% Similarity=0.297 Sum_probs=131.4
Q ss_pred HHHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCC
Q psy13286 180 KVHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGI 257 (351)
Q Consensus 180 k~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~ 257 (351)
+...+...+.. ..+.+++|||+++..++.+++.|...|+.+..+|++++..+|..+++.|+.|...++|||+.+++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 34444444432 2467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecC-----CCChhhHhhhccccccCCCceeEEEEecc---------chHHHHHHHHHHhccccCCCCccc
Q psy13286 258 DVQAVNVVINFDF-----PKMAETYLHRIGRSGRYGHLGIAINLITY---------EDRYALHRIEKELGTEIKSIPKVI 323 (351)
Q Consensus 258 di~~~~~Vi~~~~-----p~s~~~~~q~~GR~gR~~~~~~~i~~~~~---------~~~~~~~~l~~~l~~~~~~~~~~~ 323 (351)
|+|++++|++++. |.+..+|+||+||+||. ..|.++++++. .|....++++..++.....+|..+
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 9999999999885 78999999999999996 78999999984 577888999999999999999999
Q ss_pred cccccc
Q psy13286 324 DPALYV 329 (351)
Q Consensus 324 ~~~~~~ 329 (351)
.+....
T Consensus 590 ~~~~~~ 595 (652)
T PRK05298 590 KKKIRD 595 (652)
T ss_pred HHHHHH
Confidence 766444
No 111
>KOG0922|consensus
Probab=99.83 E-value=8.3e-19 Score=158.52 Aligned_cols=285 Identities=15% Similarity=0.183 Sum_probs=193.5
Q ss_pred cccccCCc---chhhhcccCcCCCCCceEEEEcCCHHHHHHHHH-HHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcE
Q psy13286 2 VQARQEPT---QFLYLNKLTPAKITSKATLIIVPTRELALQTSQ-ICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHL 77 (351)
Q Consensus 2 ~~a~tgs~---~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~I 77 (351)
|...|||| .+|-+-.=..-... +++.+--|.|.-|.-++. +..++....|-.|....--.+. ......|
T Consensus 71 viGeTGsGKSTQipQyL~eaG~~~~-g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~------ts~~Tri 143 (674)
T KOG0922|consen 71 VIGETGSGKSTQIPQYLAEAGFASS-GKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDS------TSKDTRI 143 (674)
T ss_pred EEcCCCCCccccHhHHHHhcccccC-CcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEeccc------CCCceeE
Confidence 56789997 55543221111222 458888999988866664 3333444444444433322111 1124789
Q ss_pred EEEccHHHHHHHhccCcCCCCccEEEEcccccc--cCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCe
Q psy13286 78 IIATPGRILDLMDKQVANMDHCKILVLDEADKL--LSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPY 155 (351)
Q Consensus 78 lv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~--~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 155 (351)
.+.|-+.|++-+-..+. ++++++||+||||.= ..+-.-..++.+.... +..+++++|||+. .+....|+.+..
T Consensus 144 kymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIimSATld---a~kfS~yF~~a~ 218 (674)
T KOG0922|consen 144 KYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLIIMSATLD---AEKFSEYFNNAP 218 (674)
T ss_pred EEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEEEEeeeec---HHHHHHHhcCCc
Confidence 99999999886655554 789999999999941 1111122333333333 3467999999988 445556666544
Q ss_pred EEeeccccccCCceEEEEEcCccc----HHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc----CC----eEEEe
Q psy13286 156 EINLMEELTLKGVTQYYAFVQERQ----KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL----GY----CCYYI 223 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~----k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~----~~----~~~~~ 223 (351)
.+.+.. ...++..+|...+..+ -+..+.++-...+++-+|||....++.+.+++.|.+. +- -+..+
T Consensus 219 i~~i~G--R~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lpl 296 (674)
T KOG0922|consen 219 ILTIPG--RTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPL 296 (674)
T ss_pred eEeecC--CCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeee
Confidence 444432 3333445555433332 2334444444567789999999999999999999775 11 24689
Q ss_pred ccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecC------------------CCChhhHhhhccccc
Q psy13286 224 HARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDF------------------PKMAETYLHRIGRSG 285 (351)
Q Consensus 224 ~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~------------------p~s~~~~~q~~GR~g 285 (351)
||.++.+++.++.+.--.|..+++++|++.+-.+.||++..||.-+. |.|.++-.||.||||
T Consensus 297 y~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAG 376 (674)
T KOG0922|consen 297 YGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAG 376 (674)
T ss_pred cccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCC
Confidence 99999999999988888899999999999999999999999996443 457888999999999
Q ss_pred cCCCceeEEEEeccch
Q psy13286 286 RYGHLGIAINLITYED 301 (351)
Q Consensus 286 R~~~~~~~i~~~~~~~ 301 (351)
|. .+|+|+-++++++
T Consensus 377 Rt-~pGkcyRLYte~~ 391 (674)
T KOG0922|consen 377 RT-GPGKCYRLYTESA 391 (674)
T ss_pred CC-CCceEEEeeeHHH
Confidence 98 5699999998765
No 112
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.83 E-value=5.8e-20 Score=147.31 Aligned_cols=142 Identities=30% Similarity=0.482 Sum_probs=117.1
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchH-HHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLR-DDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~ 74 (351)
+++||||+| .+|++..+... .. .++++++|+++|++|+.+.+++++...+.++..++++.... .....+..+
T Consensus 18 li~aptGsGKT~~~~~~~l~~~~~~-~~-~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (169)
T PF00270_consen 18 LISAPTGSGKTLAYILPALNRLQEG-KD-ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQ 95 (169)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTT-SS-SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTT
T ss_pred EEECCCCCccHHHHHHHHHhhhccC-CC-ceEEEEeeccccccccccccccccccccccccccccccccccccccccccc
Confidence 478999997 56676666555 33 69999999999999999999999988888999999988754 333444567
Q ss_pred CcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCC--CCCcEEEEEeeCcchHH
Q psy13286 75 VHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILP--HERQILLYSATFPLTVK 144 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~--~~~~~i~~SaT~~~~~~ 144 (351)
++|+|+||+++.+.+..+..++.+++++|+||+|.+....+...+..+...+. .+.+++++|||+++.+.
T Consensus 96 ~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~~~~~ 167 (169)
T PF00270_consen 96 ADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLPSNVE 167 (169)
T ss_dssp SSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSSTHHHH
T ss_pred ccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCChhHh
Confidence 99999999999999988655777899999999999988888888888877763 35889999999995544
No 113
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.83 E-value=2.8e-19 Score=136.99 Aligned_cols=118 Identities=38% Similarity=0.610 Sum_probs=109.2
Q ss_pred cHHHHHHHHHhhCC--CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCC
Q psy13286 179 QKVHCLNTLFSKLQ--INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRG 256 (351)
Q Consensus 179 ~k~~~l~~~l~~~~--~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G 256 (351)
.|...+..++.... ++++||||++...++.+++.|...+.++..+||+++..+|..+.+.|+++...+|++|..+++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 67777777777553 7899999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEE
Q psy13286 257 IDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINL 296 (351)
Q Consensus 257 ~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~ 296 (351)
+|+|++++|++++.|++...|.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999988877653
No 114
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.82 E-value=2.4e-18 Score=164.51 Aligned_cols=274 Identities=13% Similarity=0.116 Sum_probs=158.0
Q ss_pred CcccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHH-Hh-CC
Q psy13286 1 MVQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMR-IY-QK 74 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~-~~ 74 (351)
+|+++|||| .+.+...+.. ....+++|+|+|+.+|..|+.+.++.+.... + .+..+ ...+.. +. ..
T Consensus 267 li~~~TGsGKT~t~~~la~~l~~-~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~---~---~~~~s-~~~L~~~l~~~~ 338 (667)
T TIGR00348 267 LIWHTQGSGKTLTMLFAARKALE-LLKNPKVFFVVDRRELDYQLMKEFQSLQKDC---A---ERIES-IAELKRLLEKDD 338 (667)
T ss_pred EEEEecCCCccHHHHHHHHHHHh-hcCCCeEEEEECcHHHHHHHHHHHHhhCCCC---C---cccCC-HHHHHHHHhCCC
Confidence 467899997 2222223332 2334799999999999999999998875321 0 01111 222222 22 24
Q ss_pred CcEEEEccHHHHHHHhcc--CcCCCCc-cEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcch----HHHHH
Q psy13286 75 VHLIIATPGRILDLMDKQ--VANMDHC-KILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLT----VKNFM 147 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~--~~~~~~~-~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~----~~~~~ 147 (351)
..|+|+|.+++...+... ....... .+||+||||+.....+... +...+ ++...+++||||-.. .....
T Consensus 339 ~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~---l~~~~-p~a~~lGfTaTP~~~~d~~t~~~f 414 (667)
T TIGR00348 339 GGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKN---LKKAL-KNASFFGFTGTPIFKKDRDTSLTF 414 (667)
T ss_pred CCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHH---HHhhC-CCCcEEEEeCCCcccccccccccc
Confidence 689999999997644321 1111111 2899999998655443322 22344 346799999998532 11111
Q ss_pred HHhcCCCeEEeeccccccCCc--eEEEEEcCc-----ccH----------------------------------------
Q psy13286 148 EKHLKDPYEINLMEELTLKGV--TQYYAFVQE-----RQK---------------------------------------- 180 (351)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~k---------------------------------------- 180 (351)
....++.............+. +..|..... ..+
T Consensus 415 ~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 494 (667)
T TIGR00348 415 AYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDR 494 (667)
T ss_pred cCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHH
Confidence 100111111100111111110 000100000 000
Q ss_pred HH-----HHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhc-----CCeEEEeccCCCHH------------------
Q psy13286 181 VH-----CLNTLFSKL--QINQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQA------------------ 230 (351)
Q Consensus 181 ~~-----~l~~~l~~~--~~~~~lIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~------------------ 230 (351)
.. .+....... .+++++|||.++.+|..+++.|.+. +..+..+++..+.+
T Consensus 495 ~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~ 574 (667)
T TIGR00348 495 LESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSD 574 (667)
T ss_pred HHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccch
Confidence 00 001111111 2489999999999999999998765 23445555544322
Q ss_pred ---HHHHHHHHhhc-CCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccC
Q psy13286 231 ---HRNRVFHDFRS-GLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRY 287 (351)
Q Consensus 231 ---~r~~~~~~f~~-g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~ 287 (351)
....+++.|+. +.+++||.++++..|+|.|.+++++...+..+ ..++|.+||+.|.
T Consensus 575 ~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 575 GFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred hhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccc
Confidence 22467888876 68899999999999999999988887776555 4689999999994
No 115
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=1.1e-18 Score=165.28 Aligned_cols=296 Identities=16% Similarity=0.133 Sum_probs=200.4
Q ss_pred CcccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEE
Q psy13286 1 MVQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78 (351)
Q Consensus 1 ~~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Il 78 (351)
+.+++||+| +++++..+..+..+ ..+-+++|+.-||.|-++++..+...+|+++..+.++.+..+.... ..++|+
T Consensus 99 iaEM~TGEGKTLvA~l~a~l~al~G-~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~--Y~~dI~ 175 (913)
T PRK13103 99 IAEMRTGEGKTLVGTLAVYLNALSG-KGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAA--YAADIT 175 (913)
T ss_pred cccccCCCCChHHHHHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHH--hcCCEE
Confidence 357888886 66666666666555 7899999999999999999999999999999999888765544333 349999
Q ss_pred EEccHHH-HHHHhccCc------CCCCccEEEEcccccccCc-------------c---hHHHHHHHHHhCC--------
Q psy13286 79 IATPGRI-LDLMDKQVA------NMDHCKILVLDEADKLLSQ-------------D---FKGMLDHVISILP-------- 127 (351)
Q Consensus 79 v~Tp~~l-~~~l~~~~~------~~~~~~lvViDE~h~~~~~-------------~---~~~~~~~~~~~~~-------- 127 (351)
++|...+ .++|+.+.. ....++++||||+|.++=+ . ....+..+...+.
T Consensus 176 YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~ 255 (913)
T PRK13103 176 YGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEG 255 (913)
T ss_pred EEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCccchHHHHHHHHHHHHHHhhhhcccc
Confidence 9999998 566655432 1378899999999976310 0 0000111100000
Q ss_pred -----------C--------------------------------------------------------------------
Q psy13286 128 -----------H-------------------------------------------------------------------- 128 (351)
Q Consensus 128 -----------~-------------------------------------------------------------------- 128 (351)
.
T Consensus 256 ~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~I 335 (913)
T PRK13103 256 QVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLL 335 (913)
T ss_pred ccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEE
Confidence 0
Q ss_pred ------------------------------------------------CCcEEEEEeeCcchHHHHHHHhcCCCeEEeec
Q psy13286 129 ------------------------------------------------ERQILLYSATFPLTVKNFMEKHLKDPYEINLM 160 (351)
Q Consensus 129 ------------------------------------------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 160 (351)
-..+.+||+|......++..-|..+.+.+...
T Consensus 336 VDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTn 415 (913)
T PRK13103 336 IDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPN 415 (913)
T ss_pred EECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCC
Confidence 12344555555444444444444333322222
Q ss_pred cccccCCceEEEEEcCcccHHHHHHHHHh--hCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHH
Q psy13286 161 EELTLKGVTQYYAFVQERQKVHCLNTLFS--KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHD 238 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 238 (351)
.......... ..+.....|...+..-+. ...+.|+||-+.|.+..+.+++.|...+++...++......+-.-+.+.
T Consensus 416 kP~~R~D~~d-~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~A 494 (913)
T PRK13103 416 KPLARKDFND-LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQA 494 (913)
T ss_pred CCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHcC
Confidence 2222222222 233444567777666554 3357899999999999999999999999988777776554443444443
Q ss_pred hhcCCccEEEEeCcCCCCCCCC-------------------------------------CCCEEEEecCCCChhhHhhhc
Q psy13286 239 FRSGLCRNLVCSDLFTRGIDVQ-------------------------------------AVNVVINFDFPKMAETYLHRI 281 (351)
Q Consensus 239 f~~g~~~ilv~T~~~~~G~di~-------------------------------------~~~~Vi~~~~p~s~~~~~q~~ 281 (351)
-+.| .|.|||+++++|.||. +==|||--..+.|..-=-|-.
T Consensus 495 G~~G--aVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLr 572 (913)
T PRK13103 495 GRPG--ALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLR 572 (913)
T ss_pred CCCC--cEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhc
Confidence 3344 7899999999999994 112688888888888888999
Q ss_pred cccccCCCceeEEEEeccchH
Q psy13286 282 GRSGRYGHLGIAINLITYEDR 302 (351)
Q Consensus 282 GR~gR~~~~~~~i~~~~~~~~ 302 (351)
||+||.|.+|.+-.|++-+|.
T Consensus 573 GRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 573 GRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred cccccCCCCCceEEEEEcCcH
Confidence 999999999999999887663
No 116
>KOG0949|consensus
Probab=99.81 E-value=1.5e-18 Score=161.79 Aligned_cols=137 Identities=13% Similarity=0.159 Sum_probs=92.4
Q ss_pred CcccccCCc--chhhh--cccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC-CceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT--QFLYL--NKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL-NVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~--~l~~l--~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|.|||-+| .++.. ......... +.+++++|+++|++|............ -.+...+.|....+-..+ .-.|
T Consensus 530 vIVAPTSaGKTfisfY~iEKVLResD~-~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsin--p~nC 606 (1330)
T KOG0949|consen 530 VIVAPTSAGKTFISFYAIEKVLRESDS-DVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSIN--PWNC 606 (1330)
T ss_pred EEEeeccCCceeccHHHHHHHHhhcCC-CEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCC--chhc
Confidence 367888875 44432 333444444 799999999999999998876665322 233333444333222211 2369
Q ss_pred cEEEEccHHHHHHHhc---cCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcch
Q psy13286 76 HLIIATPGRILDLMDK---QVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLT 142 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~---~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 142 (351)
+|+|+-|+.+..+|-. ...+..+++++|+||+|.+.+..-+-.+..++... ++.++++|||..+.
T Consensus 607 QVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 607 QVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFLVLSATIGNP 674 (1330)
T ss_pred eEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCeeEEecccCCH
Confidence 9999999999887766 33467899999999999998866444445554443 56699999997654
No 117
>KOG0387|consensus
Probab=99.80 E-value=3.5e-18 Score=156.54 Aligned_cols=278 Identities=16% Similarity=0.159 Sum_probs=186.6
Q ss_pred chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcch------------HHHHH-HHhCCCc
Q psy13286 10 QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNL------------RDDIM-RIYQKVH 76 (351)
Q Consensus 10 ~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~------------~~~~~-~~~~~~~ 76 (351)
.+.+|+.|.....--+.+|||||. .++.||..++.++.. ..+|..+++.... ...+. ....+..
T Consensus 241 iisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ 317 (923)
T KOG0387|consen 241 IISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGG 317 (923)
T ss_pred HHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCc
Confidence 677777776662333899999998 677789988888865 4677777766541 11011 1123577
Q ss_pred EEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcc-hHHHHH--------
Q psy13286 77 LIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPL-TVKNFM-------- 147 (351)
Q Consensus 77 Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~~~-------- 147 (351)
|+|+|++.+.-. ...+.-..++++|+||.|++-+.+ ..+...+..+ ...+.+++|+|+-. .+.++.
T Consensus 318 ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn--s~islackki-~T~~RiILSGTPiQNnL~ELwsLfDFv~P 392 (923)
T KOG0387|consen 318 ILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN--SKISLACKKI-RTVHRIILSGTPIQNNLTELWSLFDFVFP 392 (923)
T ss_pred EEEEehhhhccc--CcccccccccEEEecCcccccCCc--cHHHHHHHhc-cccceEEeeCccccchHHHHHHHhhhccC
Confidence 999999888332 112234567899999999998887 3344444444 34456777888421 111111
Q ss_pred --------------------------------------------HHhcCCCeEEeeccccccCCceEEE-----------
Q psy13286 148 --------------------------------------------EKHLKDPYEINLMEELTLKGVTQYY----------- 172 (351)
Q Consensus 148 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----------- 172 (351)
..|+.....-++.. ...+.-...+
T Consensus 393 G~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~-~~Lp~K~E~VlfC~LT~~QR~ 471 (923)
T KOG0387|consen 393 GKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG-LKLPKKEEIVLFCRLTKLQRR 471 (923)
T ss_pred CcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-ccCCCccceEEEEeccHHHHH
Confidence 00000000000000 0000000000
Q ss_pred ----------------------------------------------------EEcCcccHHHHHHHHHh--hCCCCcEEE
Q psy13286 173 ----------------------------------------------------AFVQERQKVHCLNTLFS--KLQINQSII 198 (351)
Q Consensus 173 ----------------------------------------------------~~~~~~~k~~~l~~~l~--~~~~~~~lI 198 (351)
.......|+..+..++. ...+.++|+
T Consensus 472 ~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvll 551 (923)
T KOG0387|consen 472 LYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLL 551 (923)
T ss_pred HHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEE
Confidence 11112356677766665 334679999
Q ss_pred EeCchHHHHHHHHHHH-hcCCeEEEeccCCCHHHHHHHHHHhhcCC--ccEEEEeCcCCCCCCCCCCCEEEEecCCCChh
Q psy13286 199 FCNSTQRVELLAKKIT-ELGYCCYYIHARMAQAHRNRVFHDFRSGL--CRNLVCSDLFTRGIDVQAVNVVINFDFPKMAE 275 (351)
Q Consensus 199 f~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~ 275 (351)
|..++....-+-..|. ..++....+.|.++...|..+++.|++++ .-+|++|.+.+.|+|+..++.||+||+.|+|.
T Consensus 552 Fsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPS 631 (923)
T KOG0387|consen 552 FSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPS 631 (923)
T ss_pred ehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCc
Confidence 9999999999999998 57999999999999999999999999875 34578889999999999999999999999999
Q ss_pred hHhhhccccccCCCceeEEEE
Q psy13286 276 TYLHRIGRSGRYGHLGIAINL 296 (351)
Q Consensus 276 ~~~q~~GR~gR~~~~~~~i~~ 296 (351)
.=.|..-||.|.|++..++++
T Consensus 632 tD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 632 TDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred cchHHHHHHHhhcCccceEEE
Confidence 999999999999997655543
No 118
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.79 E-value=3.3e-19 Score=123.23 Aligned_cols=78 Identities=37% Similarity=0.630 Sum_probs=75.4
Q ss_pred HHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCC
Q psy13286 211 KKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYG 288 (351)
Q Consensus 211 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~ 288 (351)
+.|+..++.+..+||+++..+|..+++.|+++...+||||+.+++|+|+|++++||++++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 467888999999999999999999999999999999999999999999999999999999999999999999999986
No 119
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.3e-17 Score=146.83 Aligned_cols=194 Identities=19% Similarity=0.186 Sum_probs=144.2
Q ss_pred CCcEEEEEeeCcchHHHHHHHhcCCCeEEeeccccccCCceEEEEEcCcccHHHHHH-HHHh-hCCCCcEEEEeCchHHH
Q psy13286 129 ERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLN-TLFS-KLQINQSIIFCNSTQRV 206 (351)
Q Consensus 129 ~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~-~~l~-~~~~~~~lIf~~~~~~~ 206 (351)
.+|++++|||+.+.-...... +-+..-+......++. ...-+.....+.|. .+-. ...+.+++|-+=|++.|
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~---~vveQiIRPTGLlDP~---ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmA 459 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGG---NVVEQIIRPTGLLDPE---IEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMA 459 (663)
T ss_pred cCCEEEEECCCChHHHHhccC---ceeEEeecCCCCCCCc---eeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHH
Confidence 469999999988654333321 1111111111111111 11111122233333 3332 23468999999999999
Q ss_pred HHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecC-----CCChhhHhhhc
Q psy13286 207 ELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDF-----PKMAETYLHRI 281 (351)
Q Consensus 207 ~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~-----p~s~~~~~q~~ 281 (351)
+.+.+.|...|+.+.++|++..--+|.+++++++.|.++|||+-+.+.+|+|+|.|+.|.++|. .+|..+++|.+
T Consensus 460 EdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtI 539 (663)
T COG0556 460 EDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTI 539 (663)
T ss_pred HHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998886 47889999999
Q ss_pred cccccCCCceeEEEEecc---------chHHHHHHHHHHhccccCCCCccccccccc
Q psy13286 282 GRSGRYGHLGIAINLITY---------EDRYALHRIEKELGTEIKSIPKVIDPALYV 329 (351)
Q Consensus 282 GR~gR~~~~~~~i~~~~~---------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 329 (351)
|||+|. -.|.+|++.+. ++...-++++..++....-.|..+.+.+..
T Consensus 540 GRAARN-~~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~K~i~d 595 (663)
T COG0556 540 GRAARN-VNGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIKKKIRD 595 (663)
T ss_pred HHHhhc-cCCeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhH
Confidence 999996 66899998775 345556778888999998888888766533
No 120
>KOG0953|consensus
Probab=99.78 E-value=6.5e-18 Score=149.18 Aligned_cols=273 Identities=18% Similarity=0.199 Sum_probs=185.9
Q ss_pred cccCCc-chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEcc
Q psy13286 4 ARQEPT-QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATP 82 (351)
Q Consensus 4 a~tgs~-~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp 82 (351)
.||.|| ..-+|.++..+ +.-+|..|.+.||.++++.+.+. |+.+-.++|.......-. ...+..+-+|.
T Consensus 198 GPTNSGKTy~ALqrl~~a----ksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~--~~~a~hvScTV 267 (700)
T KOG0953|consen 198 GPTNSGKTYRALQRLKSA----KSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN--GNPAQHVSCTV 267 (700)
T ss_pred CCCCCchhHHHHHHHhhh----ccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--CCcccceEEEE
Confidence 578887 66667776555 45589999999999999987554 888989998876433311 23467788888
Q ss_pred HHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHH-HHhCCCCCcEEEEEeeCcchHHHHHHH---hcCCCeEEe
Q psy13286 83 GRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHV-ISILPHERQILLYSATFPLTVKNFMEK---HLKDPYEIN 158 (351)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~-~~~~~~~~~~i~~SaT~~~~~~~~~~~---~~~~~~~~~ 158 (351)
|+..- -..++..|+||+++|.+...+-.+... +........+. +- +....+.+. ..++.+.+.
T Consensus 268 EM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLC---Ge--psvldlV~~i~k~TGd~vev~ 334 (700)
T KOG0953|consen 268 EMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLC---GE--PSVLDLVRKILKMTGDDVEVR 334 (700)
T ss_pred EEeec--------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhcc---CC--chHHHHHHHHHhhcCCeeEEE
Confidence 87732 367899999999999887655434433 32222332222 21 222333333 333444444
Q ss_pred eccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCCHHHHHHHHH
Q psy13286 159 LMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQAHRNRVFH 237 (351)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~ 237 (351)
..+...+-.+ .+.+..-++..++|-++|. -|++....+...+.+.+.. ++.++|++|++.|..-..
T Consensus 335 ~YeRl~pL~v------------~~~~~~sl~nlk~GDCvV~-FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~ 401 (700)
T KOG0953|consen 335 EYERLSPLVV------------EETALGSLSNLKPGDCVVA-FSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAA 401 (700)
T ss_pred eecccCccee------------hhhhhhhhccCCCCCeEEE-eehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHH
Confidence 4333322211 1233333455555666654 4688888999999888655 999999999999999999
Q ss_pred Hhhc--CCccEEEEeCcCCCCCCCCCCCEEEEecCC---------CChhhHhhhccccccCCC---ceeEEEEeccchHH
Q psy13286 238 DFRS--GLCRNLVCSDLFTRGIDVQAVNVVINFDFP---------KMAETYLHRIGRSGRYGH---LGIAINLITYEDRY 303 (351)
Q Consensus 238 ~f~~--g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p---------~s~~~~~q~~GR~gR~~~---~~~~i~~~~~~~~~ 303 (351)
.|++ ++.+|||||+++++|+|+ +++.||+++.- .+..+..|.+|||||.|. .|.+.++..++
T Consensus 402 ~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD--- 477 (700)
T KOG0953|consen 402 LFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED--- 477 (700)
T ss_pred HhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh---
Confidence 9998 899999999999999999 78899988864 356788999999999965 37777766543
Q ss_pred HHHHHHHHhccccC
Q psy13286 304 ALHRIEKELGTEIK 317 (351)
Q Consensus 304 ~~~~l~~~l~~~~~ 317 (351)
+..+.+.++.+.+
T Consensus 478 -L~~L~~~l~~p~e 490 (700)
T KOG0953|consen 478 -LKLLKRILKRPVE 490 (700)
T ss_pred -HHHHHHHHhCCch
Confidence 4455555554444
No 121
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.78 E-value=2.8e-17 Score=154.48 Aligned_cols=287 Identities=17% Similarity=0.196 Sum_probs=179.0
Q ss_pred CcccccCCcchh-hhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHHh-CCC
Q psy13286 1 MVQARQEPTQFL-YLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRIY-QKV 75 (351)
Q Consensus 1 ~~~a~tgs~~l~-~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~-~~~ 75 (351)
|++..||||..- ++..+......|+.+|+|+|-.+|..|+.+.|+..+ +.++..++++-+..+. |..+. ...
T Consensus 221 Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~ 297 (730)
T COG1198 221 LLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARF---GAKVAVLHSGLSPGERYRVWRRARRGEA 297 (730)
T ss_pred eEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHh---CCChhhhcccCChHHHHHHHHHHhcCCc
Confidence 567889998333 334444455556899999999999999999887765 5788888888765333 33333 479
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcc------hHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHH
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQD------FKGMLDHVISILPHERQILLYSATFPLTVKNFMEK 149 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~------~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 149 (351)
.|+|+|-..+ ..+++++++||+||-|--.... ....+..+.... .++++++-|||++-+.......
T Consensus 298 ~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~-~~~pvvLgSATPSLES~~~~~~ 369 (730)
T COG1198 298 RVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK-ENAPVVLGSATPSLESYANAES 369 (730)
T ss_pred eEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH-hCCCEEEecCCCCHHHHHhhhc
Confidence 9999999888 3468899999999999543321 223344444433 5677999999987544333322
Q ss_pred hcCCCeEEeeccccc---cCCceEEEEEcCcccH-----HHHHHHHHh-h-CCCCcEEEEeCchHH--------------
Q psy13286 150 HLKDPYEINLMEELT---LKGVTQYYAFVQERQK-----VHCLNTLFS-K-LQINQSIIFCNSTQR-------------- 205 (351)
Q Consensus 150 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~k-----~~~l~~~l~-~-~~~~~~lIf~~~~~~-------------- 205 (351)
+.-..+.+..... .+.+. ...+-.+..+ ...+.+.++ . ..+.++|+|.|.+.-
T Consensus 370 --g~y~~~~L~~R~~~a~~p~v~-iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~ 446 (730)
T COG1198 370 --GKYKLLRLTNRAGRARLPRVE-IIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAE 446 (730)
T ss_pred --CceEEEEccccccccCCCcce-EEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCccc
Confidence 1112222222222 22221 1111111111 122222221 1 123445555533322
Q ss_pred ----------------------------------------------HHHHHHHHHhc--CCeEEEeccCCCH--HHHHHH
Q psy13286 206 ----------------------------------------------VELLAKKITEL--GYCCYYIHARMAQ--AHRNRV 235 (351)
Q Consensus 206 ----------------------------------------------~~~l~~~L~~~--~~~~~~~~~~~~~--~~r~~~ 235 (351)
++++.+.|++. +..+..+.++... ..-+..
T Consensus 447 Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~ 526 (730)
T COG1198 447 CPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDL 526 (730)
T ss_pred CCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHH
Confidence 23344444443 4556666666544 334578
Q ss_pred HHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCC------------ChhhHhhhccccccCCCceeEEEEeccch
Q psy13286 236 FHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPK------------MAETYLHRIGRSGRYGHLGIAINLITYED 301 (351)
Q Consensus 236 ~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~------------s~~~~~q~~GR~gR~~~~~~~i~~~~~~~ 301 (351)
+..|.+|+.+|||+|.++..|.|+|+++.|...|... ....+.|-.|||||.+.+|.+++-.-..|
T Consensus 527 l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 527 LDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred HHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 9999999999999999999999999999877665431 13356788899999989888887655544
No 122
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=4.2e-17 Score=153.22 Aligned_cols=295 Identities=13% Similarity=0.106 Sum_probs=198.7
Q ss_pred cccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEE
Q psy13286 2 VQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLII 79 (351)
Q Consensus 2 ~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv 79 (351)
.+++||=| +.+.|.....+..+ +.+=|++...-||..=++|+..+...+|++|.....+........ ...++|..
T Consensus 96 AEMkTGEGKTLvAtLpayLnAL~G-kgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~--aY~~DItY 172 (925)
T PRK12903 96 AEMKTGEGKTITSIAPVYLNALTG-KGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKRE--AYACDITY 172 (925)
T ss_pred eeecCCCCccHHHHHHHHHHHhcC-CceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHH--hccCCCee
Confidence 45677764 66666666666665 778888999999999999999999999999998887765544433 34699999
Q ss_pred EccHHH-HHHHhccCc------CCCCccEEEEcccccccCc----------------chHHHHHHHHHhCCC--------
Q psy13286 80 ATPGRI-LDLMDKQVA------NMDHCKILVLDEADKLLSQ----------------DFKGMLDHVISILPH-------- 128 (351)
Q Consensus 80 ~Tp~~l-~~~l~~~~~------~~~~~~lvViDE~h~~~~~----------------~~~~~~~~~~~~~~~-------- 128 (351)
+|...| +++|+.+.. ....+.+.||||+|.++=+ .+......+...+..
T Consensus 173 gTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek 252 (925)
T PRK12903 173 SVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEE 252 (925)
T ss_pred ecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCccchHHHHHHHHHHHhccccceEEecc
Confidence 999998 667775532 2467889999999966310 011111111111110
Q ss_pred --------------------------------------------------------------------------------
Q psy13286 129 -------------------------------------------------------------------------------- 128 (351)
Q Consensus 129 -------------------------------------------------------------------------------- 128 (351)
T Consensus 253 ~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQ 332 (925)
T PRK12903 253 TKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQ 332 (925)
T ss_pred cceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHH
Confidence
Q ss_pred ----------------------------CCcEEEEEeeCcchHHHHHHHhcCCCeEEeeccccccCCceEEEEEcCcccH
Q psy13286 129 ----------------------------ERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQK 180 (351)
Q Consensus 129 ----------------------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 180 (351)
-.++.+||+|......++.+-|..+.+.+............. ..+.....|
T Consensus 333 aIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d-~iy~t~~~K 411 (925)
T PRK12903 333 AIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEPD-SIFGTKHAK 411 (925)
T ss_pred HHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCCCCeeeeeCCC-cEEEcHHHH
Confidence 123456666655544555554444322222221111111111 223344566
Q ss_pred HHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCC
Q psy13286 181 VHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGID 258 (351)
Q Consensus 181 ~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d 258 (351)
...+..-+.. ..+.|+||.|.|.+.++.++..|.+.|+....++......+-.-+.++-+ .-.|.|||+++++|.|
T Consensus 412 ~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA~IIa~AG~--~GaVTIATNMAGRGTD 489 (925)
T PRK12903 412 WKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQ--KGAITIATNMAGRGTD 489 (925)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHHHHHHhCCC--CCeEEEecccccCCcC
Confidence 6666655442 35789999999999999999999999999888888644333333332222 3478999999999999
Q ss_pred CCCCC--------EEEEecCCCChhhHhhhccccccCCCceeEEEEeccchH
Q psy13286 259 VQAVN--------VVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDR 302 (351)
Q Consensus 259 i~~~~--------~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~ 302 (351)
|.--. |||....|.|..---|-.||+||.|.+|.+-.|++-+|.
T Consensus 490 I~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 490 IKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred ccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 96222 899988998887778999999999999999988887763
No 123
>KOG0384|consensus
Probab=99.75 E-value=1.5e-17 Score=158.63 Aligned_cols=298 Identities=18% Similarity=0.222 Sum_probs=198.4
Q ss_pred chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHh---C------CCcEEEE
Q psy13286 10 QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIY---Q------KVHLIIA 80 (351)
Q Consensus 10 ~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~------~~~Ilv~ 80 (351)
.+.+|..|.....-.+..|+|+|..-+. .|-++|.....+++++++|....++.++.+. . .++++++
T Consensus 406 ti~fl~~l~~~~~~~gpflvvvplst~~----~W~~ef~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~llt 481 (1373)
T KOG0384|consen 406 TITFLSYLFHSLQIHGPFLVVVPLSTIT----AWEREFETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLT 481 (1373)
T ss_pred HHHHHHHHHHhhhccCCeEEEeehhhhH----HHHHHHHHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeeh
Confidence 5667777766665557889999986664 4444445555889999999988777766542 1 3789999
Q ss_pred ccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcch-HHHHHHHh-cCCCeEE-
Q psy13286 81 TPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLT-VKNFMEKH-LKDPYEI- 157 (351)
Q Consensus 81 Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~-~~~~~~~~-~~~~~~~- 157 (351)
|.+.++.--. .+.--.+.+++|||||++.+.. ..+...+..+.-+. .+++|+|+-.. +.++.... +..|...
T Consensus 482 Tye~~LkDk~--~L~~i~w~~~~vDeahrLkN~~--~~l~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~ 556 (1373)
T KOG0384|consen 482 TYEIVLKDKA--ELSKIPWRYLLVDEAHRLKNDE--SKLYESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFD 556 (1373)
T ss_pred hhHHHhccHh--hhccCCcceeeecHHhhcCchH--HHHHHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCC
Confidence 9999955321 1122356799999999998765 22333344443333 56677885321 22111100 0000000
Q ss_pred ----------------------------------eeccccccCC------------------------------------
Q psy13286 158 ----------------------------------NLMEELTLKG------------------------------------ 167 (351)
Q Consensus 158 ----------------------------------~~~~~~~~~~------------------------------------ 167 (351)
++....++..
T Consensus 557 ~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~ 636 (1373)
T KOG0384|consen 557 SWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTP 636 (1373)
T ss_pred cHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCc
Confidence 0000000000
Q ss_pred ------------ceEEEEEcCcc-----------------------cHHHHHHHHHhhC--CCCcEEEEeCchHHHHHHH
Q psy13286 168 ------------VTQYYAFVQER-----------------------QKVHCLNTLFSKL--QINQSIIFCNSTQRVELLA 210 (351)
Q Consensus 168 ------------~~~~~~~~~~~-----------------------~k~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~ 210 (351)
-+|-|..-..+ .|+-.|..+|... .+.++|||...+....-++
T Consensus 637 ~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~ 716 (1373)
T KOG0384|consen 637 SLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILA 716 (1373)
T ss_pred hHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHH
Confidence 01111111111 1122223333322 3679999999999999999
Q ss_pred HHHHhcCCeEEEeccCCCHHHHHHHHHHhhc---CCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccC
Q psy13286 211 KKITELGYCCYYIHARMAQAHRNRVFHDFRS---GLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRY 287 (351)
Q Consensus 211 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~ 287 (351)
++|..++++.-.+.|.+.-+.|...++-|+. ....+|+||.+.+.|||+-.++.||+||..|+|..=+|...||+|.
T Consensus 717 eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRI 796 (1373)
T KOG0384|consen 717 EYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRI 796 (1373)
T ss_pred HHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhh
Confidence 9999999999999999999999999999986 5678899999999999999999999999999999999999999999
Q ss_pred CCcee--EEEEeccc--hHHHHHHHHHHhcccc
Q psy13286 288 GHLGI--AINLITYE--DRYALHRIEKELGTEI 316 (351)
Q Consensus 288 ~~~~~--~i~~~~~~--~~~~~~~l~~~l~~~~ 316 (351)
|++.. +|-|++.+ +...+.+-.+.++.+.
T Consensus 797 GQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~ 829 (1373)
T KOG0384|consen 797 GQKKHVNVYRLVTKNTVEEEILERAKLKMVLDH 829 (1373)
T ss_pred cccceEEEEEEecCCchHHHHHHHHHHHhhhHH
Confidence 99765 44566654 5555666655555543
No 124
>KOG1123|consensus
Probab=99.74 E-value=4.6e-17 Score=142.28 Aligned_cols=272 Identities=15% Similarity=0.145 Sum_probs=188.1
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhcc--------C
Q psy13286 22 ITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQ--------V 93 (351)
Q Consensus 22 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--------~ 93 (351)
.-++++|+||.+-.-+.||...+..|.....-.+..++++.+. ....++.|+|+|+.++..--++. .
T Consensus 343 tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~ 417 (776)
T KOG1123|consen 343 TIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDF 417 (776)
T ss_pred eecccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHH
Confidence 3357999999999999999999999987777777777776653 23467899999999884322211 1
Q ss_pred cCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHH------HHHHHhcCCCeE-----------
Q psy13286 94 ANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVK------NFMEKHLKDPYE----------- 156 (351)
Q Consensus 94 ~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~------~~~~~~~~~~~~----------- 156 (351)
+.-..++++++||+|.+...-|+..+..+.+.+ -+++|||+-..-. .++...+....+
T Consensus 418 l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~ 492 (776)
T KOG1123|consen 418 LRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAK 492 (776)
T ss_pred HhcCeeeeEEeehhccchHHHHHHHHHHHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeE
Confidence 224678999999999998888998888887766 6899999743211 111111111111
Q ss_pred ---Eeeccccc---------cCCceEEEEEcCcccHHHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEE
Q psy13286 157 ---INLMEELT---------LKGVTQYYAFVQERQKVHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITELGYCCYY 222 (351)
Q Consensus 157 ---~~~~~~~~---------~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~ 222 (351)
..++-.+. ...-......+..-.|.....-+++. ..+.++|||..+.-.....|-.|.+ -+
T Consensus 493 VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pf 567 (776)
T KOG1123|consen 493 VQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PF 567 (776)
T ss_pred EeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ce
Confidence 11111110 00011112222233566666666653 3578999999988877777776643 37
Q ss_pred eccCCCHHHHHHHHHHhhc-CCccEEEEeCcCCCCCCCCCCCEEEEecCC-CChhhHhhhccccccCC------CceeEE
Q psy13286 223 IHARMAQAHRNRVFHDFRS-GLCRNLVCSDLFTRGIDVQAVNVVINFDFP-KMAETYLHRIGRSGRYG------HLGIAI 294 (351)
Q Consensus 223 ~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p-~s~~~~~q~~GR~gR~~------~~~~~i 294 (351)
++|.+++.+|..+++.|+- ..++-+..+.+....+|+|.++++|+.+.- .|-.+-.||.||..|.. -.+..+
T Consensus 568 IYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFY 647 (776)
T KOG1123|consen 568 IYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFY 647 (776)
T ss_pred EECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeee
Confidence 8999999999999999986 457777788888999999999999988765 56778889999999862 246778
Q ss_pred EEeccchHHHHHHH
Q psy13286 295 NLITYEDRYALHRI 308 (351)
Q Consensus 295 ~~~~~~~~~~~~~l 308 (351)
++++.+.....+.-
T Consensus 648 SLVS~DTqEM~YSt 661 (776)
T KOG1123|consen 648 SLVSKDTQEMYYST 661 (776)
T ss_pred eeeecchHHHHhhh
Confidence 88887655444433
No 125
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.74 E-value=5.1e-16 Score=146.74 Aligned_cols=254 Identities=14% Similarity=0.132 Sum_probs=163.5
Q ss_pred CcccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEE
Q psy13286 1 MVQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78 (351)
Q Consensus 1 ~~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Il 78 (351)
+.+++||.| +.+.+.....+.. |..+-|++++..||.+-++|+..+.+.+|+++....++.+..+... ...++|+
T Consensus 93 IaEm~TGEGKTL~a~l~ayl~aL~-G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~--aY~~DIt 169 (870)
T CHL00122 93 IAEMKTGEGKTLVATLPAYLNALT-GKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKK--NYLKDIT 169 (870)
T ss_pred cccccCCCCchHHHHHHHHHHHhc-CCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHH--hcCCCCE
Confidence 457889886 4444444444444 4789999999999999999999999999999999888776655433 3458999
Q ss_pred EEccHHH-HHHHhccCc------CCCCccEEEEcccccccCcc----------------hHHHHHHHHHhCCC-------
Q psy13286 79 IATPGRI-LDLMDKQVA------NMDHCKILVLDEADKLLSQD----------------FKGMLDHVISILPH------- 128 (351)
Q Consensus 79 v~Tp~~l-~~~l~~~~~------~~~~~~lvViDE~h~~~~~~----------------~~~~~~~~~~~~~~------- 128 (351)
.+|...+ .++|+.+.. ....+.+.||||+|.++=+. .......+...+..
T Consensus 170 YgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vd 249 (870)
T CHL00122 170 YVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVD 249 (870)
T ss_pred ecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEE
Confidence 9999888 566665432 24678899999999652100 00001111111100
Q ss_pred --------------------------------------------------------------------------------
Q psy13286 129 -------------------------------------------------------------------------------- 128 (351)
Q Consensus 129 -------------------------------------------------------------------------------- 128 (351)
T Consensus 250 ek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLH 329 (870)
T CHL00122 250 EKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLH 329 (870)
T ss_pred cCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHH
Confidence
Q ss_pred -----------------------------CCcEEEEEeeCcchHHHHHHHhcCCCeEEeeccccccCCceEEEEEcCccc
Q psy13286 129 -----------------------------ERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQ 179 (351)
Q Consensus 129 -----------------------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (351)
-..+.+||+|......++.+-|..+.+.+............. ........
T Consensus 330 QaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~R~d~~d-~v~~t~~~ 408 (870)
T CHL00122 330 QAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRKDLPD-LIYKDELS 408 (870)
T ss_pred HHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCCCccceeCCC-eEEeCHHH
Confidence 134567777766555555555544433322222221111211 22334445
Q ss_pred HHHHHHHH-Hh-hCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCC--HHHHHHHHHHhhcCCccEEEEeCcCCC
Q psy13286 180 KVHCLNTL-FS-KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA--QAHRNRVFHDFRSGLCRNLVCSDLFTR 255 (351)
Q Consensus 180 k~~~l~~~-l~-~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~--~~~r~~~~~~f~~g~~~ilv~T~~~~~ 255 (351)
|...+..- .. ...+.|+||-|.|.+..+.++..|...+++...++.... ..+-.-+-++-+.| .|.|||+++++
T Consensus 409 K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~~G--~VTIATNMAGR 486 (870)
T CHL00122 409 KWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRKG--SITIATNMAGR 486 (870)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCCCC--cEEEeccccCC
Confidence 66655443 33 335789999999999999999999999999888888632 33333344433334 78999999999
Q ss_pred CCCCC
Q psy13286 256 GIDVQ 260 (351)
Q Consensus 256 G~di~ 260 (351)
|.||.
T Consensus 487 GTDI~ 491 (870)
T CHL00122 487 GTDII 491 (870)
T ss_pred CcCee
Confidence 99984
No 126
>KOG0389|consensus
Probab=99.73 E-value=1.2e-16 Score=146.48 Aligned_cols=120 Identities=22% Similarity=0.268 Sum_probs=101.6
Q ss_pred HHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCC--ccEEEEeCcCCCC
Q psy13286 181 VHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGL--CRNLVCSDLFTRG 256 (351)
Q Consensus 181 ~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~ilv~T~~~~~G 256 (351)
...|..+|... ++.++|||........-+-..|...++....+.|.+...+|..+++.|...+ .-+|++|.+.+.|
T Consensus 763 ~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~G 842 (941)
T KOG0389|consen 763 CRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFG 842 (941)
T ss_pred HhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcce
Confidence 34444444433 3679999999999999999999999999999999999999999999999865 4568899999999
Q ss_pred CCCCCCCEEEEecCCCChhhHhhhccccccCCCceeE--EEEeccc
Q psy13286 257 IDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIA--INLITYE 300 (351)
Q Consensus 257 ~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~--i~~~~~~ 300 (351)
+|+..+++||.+|...+|-.=.|.-.|++|.|+..-+ +-+++..
T Consensus 843 INLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 843 INLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred ecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecC
Confidence 9999999999999999998889999999999986544 4456654
No 127
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.71 E-value=5.7e-15 Score=145.80 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=85.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc--CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCC--EEEE
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVN--VVIN 267 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~--~Vi~ 267 (351)
.++++|||++|.+..+.++..|... ..+...+..+.. ..|.++++.|++|+..||++|+.+.+|+|+|+.. +||.
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 3478999999999999999999752 112233444433 5788999999999999999999999999999865 5777
Q ss_pred ecCCCC-h-----------------------------hhHhhhccccccCCCceeEEEEeccc--hHHHHHHHHHHh
Q psy13286 268 FDFPKM-A-----------------------------ETYLHRIGRSGRYGHLGIAINLITYE--DRYALHRIEKEL 312 (351)
Q Consensus 268 ~~~p~s-~-----------------------------~~~~q~~GR~gR~~~~~~~i~~~~~~--~~~~~~~l~~~l 312 (351)
..+|.. + ..+.|.+||.-|...+.-++++++.. ...+-+.+-+.+
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSL 828 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhC
Confidence 776631 1 12468889999987665566666654 223334444443
No 128
>KOG0923|consensus
Probab=99.71 E-value=1.1e-15 Score=137.74 Aligned_cols=285 Identities=16% Similarity=0.230 Sum_probs=189.2
Q ss_pred CcccccCCc---chhhhcccCcCCCCCceEEEEcCCHHHHHHHHH-HHHHHHhhCCceEEEEECCcchHHHHHHHhCCCc
Q psy13286 1 MVQARQEPT---QFLYLNKLTPAKITSKATLIIVPTRELALQTSQ-ICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVH 76 (351)
Q Consensus 1 ~~~a~tgs~---~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 76 (351)
+|...|||| .+|-.-.=.---.+++++-+--|.|.-|-.++. +.+++.-.+|-.|.....-.+.. .+..-
T Consensus 284 iI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcT------SekTv 357 (902)
T KOG0923|consen 284 IIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCT------SEKTV 357 (902)
T ss_pred EEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEecccc------Cccee
Confidence 366789997 555432211112223558888999988866654 34444443332222221111100 12245
Q ss_pred EEEEccHHHHHHHhccCcCCCCccEEEEcccccc-cC-cchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 77 LIIATPGRILDLMDKQVANMDHCKILVLDEADKL-LS-QDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 77 Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~-~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
|=+.|-++|++-+-..+ ++.+++.+||||||.= +. +-....++.+ ..+.+...+++.|||+.. +....|+.+.
T Consensus 358 lKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDI-ar~RpdLKllIsSAT~DA---ekFS~fFDda 432 (902)
T KOG0923|consen 358 LKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDI-ARFRPDLKLLISSATMDA---EKFSAFFDDA 432 (902)
T ss_pred eeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHH-HhhCCcceEEeeccccCH---HHHHHhccCC
Confidence 67999999987554444 4789999999999941 11 1122233333 333467789999999873 3445555554
Q ss_pred eEEeeccccccCCceEEEEEcCcccHHHHH-HHHHh---hCCCCcEEEEeCchHHHHHHHHHHHhc---------CCeEE
Q psy13286 155 YEINLMEELTLKGVTQYYAFVQERQKVHCL-NTLFS---KLQINQSIIFCNSTQRVELLAKKITEL---------GYCCY 221 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l-~~~l~---~~~~~~~lIf~~~~~~~~~l~~~L~~~---------~~~~~ 221 (351)
..+.++ ....++..+|...++.+-+++. ..+++ ..+.+-+|||....++.+...+.|..+ .+-++
T Consensus 433 pIF~iP--GRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~ 510 (902)
T KOG0923|consen 433 PIFRIP--GRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVL 510 (902)
T ss_pred cEEecc--CcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEe
Confidence 444332 2334466667666665544443 33333 335688999999999888887777653 35578
Q ss_pred EeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecC------------------CCChhhHhhhccc
Q psy13286 222 YIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDF------------------PKMAETYLHRIGR 283 (351)
Q Consensus 222 ~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~------------------p~s~~~~~q~~GR 283 (351)
.+|+.+|.+.+..+.+---.|..+|++||++.+..+.|+++..||.-+. |-|.++-.||.||
T Consensus 511 PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGR 590 (902)
T KOG0923|consen 511 PIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGR 590 (902)
T ss_pred eccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccc
Confidence 9999999999999999888899999999999999999999999996444 4467788999999
Q ss_pred cccCCCceeEEEEecc
Q psy13286 284 SGRYGHLGIAINLITY 299 (351)
Q Consensus 284 ~gR~~~~~~~i~~~~~ 299 (351)
|||.| +|+|+-++..
T Consensus 591 AGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 591 AGRTG-PGKCFRLYTA 605 (902)
T ss_pred cCCCC-CCceEEeech
Confidence 99984 5899999874
No 129
>KOG0390|consensus
Probab=99.69 E-value=1.7e-14 Score=135.42 Aligned_cols=263 Identities=15% Similarity=0.143 Sum_probs=166.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcch----HHHHHHHh---CCCcEEEEccHHHHHHHhccCcCCC
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNL----RDDIMRIY---QKVHLIIATPGRILDLMDKQVANMD 97 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~---~~~~Ilv~Tp~~l~~~l~~~~~~~~ 97 (351)
.++|||+|. .|+.-|+++|.++.....+....+.+..+. ...+..+. -...|++.+.+.+.+..+.- ...
T Consensus 299 ~k~lVV~P~-sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~i--l~~ 375 (776)
T KOG0390|consen 299 NKPLVVAPS-SLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKI--LLI 375 (776)
T ss_pred cccEEEccH-HHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHH--hcC
Confidence 689999998 888899999988876556777777777763 11111111 13568899999997655432 256
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCc-chHHH-------------------------------
Q psy13286 98 HCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFP-LTVKN------------------------------- 145 (351)
Q Consensus 98 ~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~-~~~~~------------------------------- 145 (351)
.++++|+||.|++-+.. ..+...+..+ +..+.|++|+|+- .++.+
T Consensus 376 ~~glLVcDEGHrlkN~~--s~~~kaL~~l-~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~ 452 (776)
T KOG0390|consen 376 RPGLLVCDEGHRLKNSD--SLTLKALSSL-KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGR 452 (776)
T ss_pred CCCeEEECCCCCccchh--hHHHHHHHhc-CCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhccccccc
Confidence 88999999999987765 3344444554 3455788999951 11111
Q ss_pred --------------------HHHHhcCCCeEEeeccccccCCceEEEEEcCcc---------------------------
Q psy13286 146 --------------------FMEKHLKDPYEINLMEELTLKGVTQYYAFVQER--------------------------- 178 (351)
Q Consensus 146 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 178 (351)
+...++..... .......++...+..+++..
T Consensus 453 ~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~--~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~ 530 (776)
T KOG0390|consen 453 DADASEEDREREERLQELRELTNKFILRRTG--DILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELI 530 (776)
T ss_pred CCCcchhhhhhHHHHHHHHHHHHhheeeccc--chhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHH
Confidence 11111110000 00011122222333333221
Q ss_pred -----------------------------------------------cHHHHHHHHHhhCCCCcEE---EEeCchHHHH-
Q psy13286 179 -----------------------------------------------QKVHCLNTLFSKLQINQSI---IFCNSTQRVE- 207 (351)
Q Consensus 179 -----------------------------------------------~k~~~l~~~l~~~~~~~~l---If~~~~~~~~- 207 (351)
.|+..|..++.... .+++ +++....+..
T Consensus 531 ~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~-ek~~~~~v~Isny~~tld 609 (776)
T KOG0390|consen 531 TKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIR-EKLLVKSVLISNYTQTLD 609 (776)
T ss_pred HHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHh-hhcceEEEEeccHHHHHH
Confidence 11222222221111 1232 3333344444
Q ss_pred HHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCC---ccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhcccc
Q psy13286 208 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGL---CRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRS 284 (351)
Q Consensus 208 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~ 284 (351)
.+....+-+|+.+..++|.|+..+|..+++.|++.. .-+|.+|.+.+.|+|+-+++.||.||++|+|+.-.|.++||
T Consensus 610 l~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~ 689 (776)
T KOG0390|consen 610 LFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARA 689 (776)
T ss_pred HHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHh
Confidence 444444445999999999999999999999999743 33567778999999999999999999999999999999999
Q ss_pred ccCCCceeEEEE
Q psy13286 285 GRYGHLGIAINL 296 (351)
Q Consensus 285 gR~~~~~~~i~~ 296 (351)
.|.|++..|+++
T Consensus 690 ~RdGQKk~v~iY 701 (776)
T KOG0390|consen 690 WRDGQKKPVYIY 701 (776)
T ss_pred ccCCCcceEEEE
Confidence 999998766654
No 130
>KOG0392|consensus
Probab=99.69 E-value=1.7e-15 Score=144.58 Aligned_cols=264 Identities=18% Similarity=0.237 Sum_probs=179.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhccCcCCCCccEEEE
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKILVL 104 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvVi 104 (351)
...|||||+ .|+.-|..++.+|+.. +++....|....+...+.-.+..+|+|++++.+.+.+.. +.-..+.++|+
T Consensus 1032 ~PSLIVCPs-TLtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVL 1106 (1549)
T KOG0392|consen 1032 LPSLIVCPS-TLTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVL 1106 (1549)
T ss_pred CCeEEECCc-hhhhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEe
Confidence 448999998 8998899888888775 677778888777766666667789999999998532211 11346679999
Q ss_pred cccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcch-HHH------------------HHHHhc--------------
Q psy13286 105 DEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLT-VKN------------------FMEKHL-------------- 151 (351)
Q Consensus 105 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~-~~~------------------~~~~~~-------------- 151 (351)
||-|.+.+.. ..+.+..+.+..+. .+.+|+|+-.. +.+ |-.+|.
T Consensus 1107 DEGHVikN~k--tkl~kavkqL~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Ssk 1183 (1549)
T KOG0392|consen 1107 DEGHVIKNSK--TKLTKAVKQLRANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSK 1183 (1549)
T ss_pred cCcceecchH--HHHHHHHHHHhhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchh
Confidence 9999887654 34555555554444 45688884111 000 000000
Q ss_pred -----------------------------CC--CeEE----------------------------eeccccccCCc--e-
Q psy13286 152 -----------------------------KD--PYEI----------------------------NLMEELTLKGV--T- 169 (351)
Q Consensus 152 -----------------------------~~--~~~~----------------------------~~~~~~~~~~~--~- 169 (351)
.+ |..+ .........+. .
T Consensus 1184 e~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~H 1263 (1549)
T KOG0392|consen 1184 EQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTH 1263 (1549)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHH
Confidence 00 0000 00000000000 0
Q ss_pred -------------EE-EEEc-----------------------CcccHHHHHHHHHhhC----------------CCCcE
Q psy13286 170 -------------QY-YAFV-----------------------QERQKVHCLNTLFSKL----------------QINQS 196 (351)
Q Consensus 170 -------------~~-~~~~-----------------------~~~~k~~~l~~~l~~~----------------~~~~~ 196 (351)
|- .... ....|+.+|.+++... .+.++
T Consensus 1264 vFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRi 1343 (1549)
T KOG0392|consen 1264 VFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRI 1343 (1549)
T ss_pred HHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhcccee
Confidence 00 0000 1134567777777543 23589
Q ss_pred EEEeCchHHHHHHHHHHHhcC---CeEEEeccCCCHHHHHHHHHHhhcC-CccEEEE-eCcCCCCCCCCCCCEEEEecCC
Q psy13286 197 IIFCNSTQRVELLAKKITELG---YCCYYIHARMAQAHRNRVFHDFRSG-LCRNLVC-SDLFTRGIDVQAVNVVINFDFP 271 (351)
Q Consensus 197 lIf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g-~~~ilv~-T~~~~~G~di~~~~~Vi~~~~p 271 (351)
||||.-+..+..+-+-|-+.. +....+.|..++.+|.++.+.|+++ .+++|+- |-+.+.|+|+.+++.||+++-.
T Consensus 1344 LIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHD 1423 (1549)
T KOG0392|consen 1344 LIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHD 1423 (1549)
T ss_pred EEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecC
Confidence 999999999999888886652 3334899999999999999999998 7888755 4689999999999999999999
Q ss_pred CChhhHhhhccccccCCCceeEEEE
Q psy13286 272 KMAETYLHRIGRSGRYGHLGIAINL 296 (351)
Q Consensus 272 ~s~~~~~q~~GR~gR~~~~~~~i~~ 296 (351)
|+|-.=+|.+.||+|.|++..+.++
T Consensus 1424 WNPMrDLQAMDRAHRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1424 WNPMRDLQAMDRAHRIGQKRVVNVY 1448 (1549)
T ss_pred CCchhhHHHHHHHHhhcCceeeeee
Confidence 9999999999999999998776654
No 131
>KOG4150|consensus
Probab=99.68 E-value=4.3e-16 Score=138.26 Aligned_cols=319 Identities=12% Similarity=0.100 Sum_probs=207.1
Q ss_pred CCcchhhhcccCcC-CCCCceEEEEcCCHHHHHHHHHHHHHHHhh---CCceEEEEECCcchHHHHHHHhCCCcEEEEcc
Q psy13286 7 EPTQFLYLNKLTPA-KITSKATLIIVPTRELALQTSQICIELAKH---LNVKVMVTTGGTNLRDDIMRIYQKVHLIIATP 82 (351)
Q Consensus 7 gs~~l~~l~~l~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp 82 (351)
|.++.|-+..+... ....-..+++.|+.++++.....+.-.... ..-.++..+++............+.+++.+.|
T Consensus 313 GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~ 392 (1034)
T KOG4150|consen 313 GKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQ 392 (1034)
T ss_pred CCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCH
Confidence 44566655444321 122246788899999986654322111100 01123344444444555555566899999999
Q ss_pred HHHHHH-Hhc---cCcCCCCccEEEEcccccccCcchHHH----HHHHHHhC-----CCCCcEEEEEeeCcchHHHHHHH
Q psy13286 83 GRILDL-MDK---QVANMDHCKILVLDEADKLLSQDFKGM----LDHVISIL-----PHERQILLYSATFPLTVKNFMEK 149 (351)
Q Consensus 83 ~~l~~~-l~~---~~~~~~~~~lvViDE~h~~~~~~~~~~----~~~~~~~~-----~~~~~~i~~SaT~~~~~~~~~~~ 149 (351)
+..... +.+ +...+-...++++||+|..... ++.. +..+...+ ....|++-.++|+....+.....
T Consensus 393 ~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~ 471 (1034)
T KOG4150|consen 393 AEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSEL 471 (1034)
T ss_pred HHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHh
Confidence 988553 322 2223456678999999965443 3332 22222222 34678898999987776655544
Q ss_pred hcCCCeEEeeccccccCCceEEEEEcCcc---------cHHHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhc--
Q psy13286 150 HLKDPYEINLMEELTLKGVTQYYAFVQER---------QKVHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITEL-- 216 (351)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~k~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~~~-- 216 (351)
+..+.... +.....+.+-.+++.|.+.. .+..-...++.+ ..+-++|-||++++.|+.+-...+..
T Consensus 472 ~~~~E~~L-i~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ 550 (1034)
T KOG4150|consen 472 ANLSELEL-VTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILA 550 (1034)
T ss_pred cCCcceEE-EEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHH
Confidence 43333332 22344555566777776541 222222233332 23568999999999998765554432
Q ss_pred --C----CeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCc
Q psy13286 217 --G----YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHL 290 (351)
Q Consensus 217 --~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~ 290 (351)
+ ..+..+.|+...++|.++..++-.|+..-+|+|++++.|+||..++.|++.++|.|...+.|++|||||.+++
T Consensus 551 ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 551 ETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred HhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 1 1245677999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred eeEEE--EeccchHHHHHHHHHHhccccCCCCccccccc
Q psy13286 291 GIAIN--LITYEDRYALHRIEKELGTEIKSIPKVIDPAL 327 (351)
Q Consensus 291 ~~~i~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 327 (351)
..++. +..+-|..++..-+..++.+..++-.++.+..
T Consensus 631 SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N~~ 669 (1034)
T KOG4150|consen 631 SLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQNKH 669 (1034)
T ss_pred ceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecccHH
Confidence 65554 44455777777777777777777655555443
No 132
>KOG0920|consensus
Probab=99.66 E-value=9.1e-15 Score=139.46 Aligned_cols=287 Identities=14% Similarity=0.186 Sum_probs=188.2
Q ss_pred cccccCCc---chh--hhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHH-HHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 2 VQARQEPT---QFL--YLNKLTPAKITSKATLIIVPTRELALQTSQICIE-LAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 2 ~~a~tgs~---~l~--~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+...||.| .+| +|....... ..-++++--|.|--|-.++++..+ .+...|-.|..-.+..+. .....
T Consensus 193 IsGeTGcGKTTQvpQfiLd~~~~~~-~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~------~s~~t 265 (924)
T KOG0920|consen 193 ISGETGCGKTTQVPQFILDEAIESG-AACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESK------RSRET 265 (924)
T ss_pred EeCCCCCCchhhhhHHHHHHHHhcC-CCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecc------cCCce
Confidence 44678886 444 333322233 446788888998777666664432 233334444433333331 12247
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEccccc-ccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADK-LLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~-~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
.++++|.+.|++.+.... .+..+..+|+||+|. -.+.+|--.+.+.+-...+..++++||||+.. +....|+...
T Consensus 266 ~L~fcTtGvLLr~L~~~~-~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~da---e~fs~YF~~~ 341 (924)
T KOG0920|consen 266 RLLFCTTGVLLRRLQSDP-TLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDA---ELFSDYFGGC 341 (924)
T ss_pred eEEEecHHHHHHHhccCc-ccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecch---HHHHHHhCCC
Confidence 899999999999887744 478999999999994 23344554444444445578899999999873 3344444433
Q ss_pred eEEeeccc-c----------------ccCCceEE------------EEEcCcccHHHHHHHHH----hhCCCCcEEEEeC
Q psy13286 155 YEINLMEE-L----------------TLKGVTQY------------YAFVQERQKVHCLNTLF----SKLQINQSIIFCN 201 (351)
Q Consensus 155 ~~~~~~~~-~----------------~~~~~~~~------------~~~~~~~~k~~~l~~~l----~~~~~~~~lIf~~ 201 (351)
-.+.+... . ......+. ......+-..+.+..++ .....+.+|||.+
T Consensus 342 pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLP 421 (924)
T KOG0920|consen 342 PVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLP 421 (924)
T ss_pred ceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcC
Confidence 33322210 0 00000000 00001112233333333 3444788999999
Q ss_pred chHHHHHHHHHHHhc-------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecC----
Q psy13286 202 STQRVELLAKKITEL-------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDF---- 270 (351)
Q Consensus 202 ~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~---- 270 (351)
...+...+++.|... ..-+..+|+.|+..++..+...--.|..+|+++|++.+-.+.|+++-+||..+.
T Consensus 422 G~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~ 501 (924)
T KOG0920|consen 422 GWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEK 501 (924)
T ss_pred CHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeee
Confidence 999999999999752 245778999999999999999999999999999999999999999999996443
Q ss_pred ----C----------CChhhHhhhccccccCCCceeEEEEeccc
Q psy13286 271 ----P----------KMAETYLHRIGRSGRYGHLGIAINLITYE 300 (351)
Q Consensus 271 ----p----------~s~~~~~q~~GR~gR~~~~~~~i~~~~~~ 300 (351)
- .|...-.||.|||||. .+|.|+-+++..
T Consensus 502 ~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 502 SYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred eecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 2 2455678999999998 789999988765
No 133
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.66 E-value=4.7e-16 Score=108.54 Aligned_cols=81 Identities=36% Similarity=0.671 Sum_probs=77.1
Q ss_pred HHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccC
Q psy13286 208 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRY 287 (351)
Q Consensus 208 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~ 287 (351)
.+++.|+..++.+..+||+++.++|..+++.|+++...+|++|+.+++|+|+|++++|+.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy13286 288 G 288 (351)
Q Consensus 288 ~ 288 (351)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 134
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=1.9e-14 Score=136.08 Aligned_cols=253 Identities=15% Similarity=0.124 Sum_probs=162.6
Q ss_pred cccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEE
Q psy13286 2 VQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLII 79 (351)
Q Consensus 2 ~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv 79 (351)
.+++||-| +.+.+.....+..+ +.+-||+++.-||..-++|+..+.+.+|++|....++.+..+. .....++|+.
T Consensus 103 AEM~TGEGKTL~atlpaylnAL~G-kgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~er--r~aY~~DItY 179 (939)
T PRK12902 103 AEMKTGEGKTLVATLPSYLNALTG-KGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEER--KKNYACDITY 179 (939)
T ss_pred eeecCCCChhHHHHHHHHHHhhcC-CCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHH--HHhcCCCeEE
Confidence 46788775 66666666666665 7899999999999999999999999999999998876655443 3345799999
Q ss_pred EccHHH-HHHHhccCc------CCCCccEEEEcccccccCc----------------chHHHHHHHHHhCCC--------
Q psy13286 80 ATPGRI-LDLMDKQVA------NMDHCKILVLDEADKLLSQ----------------DFKGMLDHVISILPH-------- 128 (351)
Q Consensus 80 ~Tp~~l-~~~l~~~~~------~~~~~~lvViDE~h~~~~~----------------~~~~~~~~~~~~~~~-------- 128 (351)
+|+..+ +++|+.+.. ....+.+.||||+|.++=+ ........+...+..
T Consensus 180 gTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~ 259 (939)
T PRK12902 180 ATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEG 259 (939)
T ss_pred ecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCCccchHHHHHHHHHHHHhhhhcccCCCC
Confidence 999999 555554322 2468889999999966310 000011111111000
Q ss_pred --------------------------------------------------------------------------------
Q psy13286 129 -------------------------------------------------------------------------------- 128 (351)
Q Consensus 129 -------------------------------------------------------------------------------- 128 (351)
T Consensus 260 dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrw 339 (939)
T PRK12902 260 DYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRW 339 (939)
T ss_pred CeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCcc
Confidence
Q ss_pred ----------------------------------CCcEEEEEeeCcchHHHHHHHhcCCCeEEeeccccccCCceEEEEE
Q psy13286 129 ----------------------------------ERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAF 174 (351)
Q Consensus 129 ----------------------------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (351)
-.++.+||+|......++.+-|..+.+.+.............. .+
T Consensus 340 s~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~d~~d~-vy 418 (939)
T PRK12902 340 SDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVTVIPTNRPRRRQDWPDQ-VY 418 (939)
T ss_pred chHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEEEcCCCCCeeeecCCCe-EE
Confidence 1234455555544444444444433222222222222112222 23
Q ss_pred cCcccHHHHHHHHHh--hCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCC--HHHHHHHHHHhhcCCccEEEEe
Q psy13286 175 VQERQKVHCLNTLFS--KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA--QAHRNRVFHDFRSGLCRNLVCS 250 (351)
Q Consensus 175 ~~~~~k~~~l~~~l~--~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~--~~~r~~~~~~f~~g~~~ilv~T 250 (351)
.....|...+..-+. ...+.|+||-|.|.+..+.++..|...|++...++.... ..+-.-+.++-+.| .|.|||
T Consensus 419 ~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~G--aVTIAT 496 (939)
T PRK12902 419 KTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRKG--AVTIAT 496 (939)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCCCC--cEEEec
Confidence 333466666665444 335789999999999999999999999999888888632 23333333333334 788999
Q ss_pred CcCCCCCCCC
Q psy13286 251 DLFTRGIDVQ 260 (351)
Q Consensus 251 ~~~~~G~di~ 260 (351)
+++++|.||.
T Consensus 497 NMAGRGTDIk 506 (939)
T PRK12902 497 NMAGRGTDII 506 (939)
T ss_pred cCCCCCcCEe
Confidence 9999999984
No 135
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.65 E-value=3e-13 Score=120.49 Aligned_cols=286 Identities=20% Similarity=0.262 Sum_probs=200.0
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHHHHhhC-Cc----eEEEEEC--------------CcchHHHHHHH-----------
Q psy13286 22 ITSKATLIIVPTRELALQTSQICIELAKHL-NV----KVMVTTG--------------GTNLRDDIMRI----------- 71 (351)
Q Consensus 22 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~----~v~~~~~--------------~~~~~~~~~~~----------- 71 (351)
-.++++|||+|+|.-|.++.+.+-++.... .+ +...-+| ......++..+
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 346999999999999999998888776551 00 0000000 00001111111
Q ss_pred --------------hCCCcEEEEccHHHHHHHhc------cCcCCCCccEEEEcccccccCcchHHHHHHHHHhC---CC
Q psy13286 72 --------------YQKVHLIIATPGRILDLMDK------QVANMDHCKILVLDEADKLLSQDFKGMLDHVISIL---PH 128 (351)
Q Consensus 72 --------------~~~~~Ilv~Tp~~l~~~l~~------~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~---~~ 128 (351)
...+|||||+|=-|...+.. ..-.++++.++|+|.+|.+.-.+|.. +..++..+ |+
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~H-v~~v~~~lN~~P~ 193 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEH-VLHVFEHLNLQPK 193 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHH-HHHHHHHhccCCC
Confidence 12588999999888777764 22347899999999999876666543 33333332 22
Q ss_pred ---------------------CCcEEEEEeeCcchHHHHHHHhcCCCeEE-eec---c-----ccccCCceEEEEEcCcc
Q psy13286 129 ---------------------ERQILLYSATFPLTVKNFMEKHLKDPYEI-NLM---E-----ELTLKGVTQYYAFVQER 178 (351)
Q Consensus 129 ---------------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~-~~~---~-----~~~~~~~~~~~~~~~~~ 178 (351)
-+|.+++|+..++.+..+....+.+.... .+. . .....++.|.+...+..
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 36999999999999999888866553221 111 1 12344566777654322
Q ss_pred -------cHHH-----HHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccE
Q psy13286 179 -------QKVH-----CLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRN 246 (351)
Q Consensus 179 -------~k~~-----~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~i 246 (351)
...+ .+..+.+....+.+|||++|.-+--++.+.|++.++....++.-.+..+..+....|.+|+.++
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~i 353 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPI 353 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceE
Confidence 1222 2233332445678999999999999999999999999999999999999999999999999999
Q ss_pred EEEeC--cCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCC------CceeEEEEeccchHHHHHHH
Q psy13286 247 LVCSD--LFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYG------HLGIAINLITYEDRYALHRI 308 (351)
Q Consensus 247 lv~T~--~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~------~~~~~i~~~~~~~~~~~~~l 308 (351)
|+.|. ..-+-..+.++.+||.|++|..+.-|...++-.+... ..+.|.++++..|...++.+
T Consensus 354 LL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 354 LLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 99997 5667778999999999999999888877765444332 25789999999987666655
No 136
>KOG0924|consensus
Probab=99.64 E-value=1.9e-15 Score=136.64 Aligned_cols=284 Identities=15% Similarity=0.226 Sum_probs=180.0
Q ss_pred CcccccCCcchhhhcccCcCCC--CCceEEEEcCCHHHHHHHHHHH-HHHHhhCCceEEEEECCcchHHHHHHHhCCCcE
Q psy13286 1 MVQARQEPTQFLYLNKLTPAKI--TSKATLIIVPTRELALQTSQIC-IELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHL 77 (351)
Q Consensus 1 ~~~a~tgs~~l~~l~~l~~~~~--~~~~~lil~P~~~L~~q~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~I 77 (351)
+|..-||||--.-|+..+-... ..+-+-+-.|.|.-|--++... +++....|..|.....-.... .....|
T Consensus 375 vivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT------~~~T~I 448 (1042)
T KOG0924|consen 375 VIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVT------SEDTKI 448 (1042)
T ss_pred EEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecC------CCceeE
Confidence 3567899975444444332222 2356666789998886665433 333333343333222111100 123457
Q ss_pred EEEccHHHHHH-HhccCcCCCCccEEEEcccccc-cCcc-hHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 78 IIATPGRILDL-MDKQVANMDHCKILVLDEADKL-LSQD-FKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 78 lv~Tp~~l~~~-l~~~~~~~~~~~lvViDE~h~~-~~~~-~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
=..|-+.|++- +... .+.+++.||+||||.= ++-+ .-..++..++. .....++++|||+.. ..+..|+++-
T Consensus 449 kymTDGiLLrEsL~d~--~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKliVtSATm~a---~kf~nfFgn~ 522 (1042)
T KOG0924|consen 449 KYMTDGILLRESLKDR--DLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKLIVTSATMDA---QKFSNFFGNC 522 (1042)
T ss_pred EEeccchHHHHHhhhh--hhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceEEEeeccccH---HHHHHHhCCC
Confidence 78888888663 3322 3689999999999952 2222 11223333333 356789999999873 3344455543
Q ss_pred eEEeeccccccCCceEEEEEcCcccH-HHHHHHHHh---hCCCCcEEEEeCchHHHHHHHHHHHhc----------CCeE
Q psy13286 155 YEINLMEELTLKGVTQYYAFVQERQK-VHCLNTLFS---KLQINQSIIFCNSTQRVELLAKKITEL----------GYCC 220 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~l~~~l~---~~~~~~~lIf~~~~~~~~~l~~~L~~~----------~~~~ 220 (351)
....+.. ...++...+...+-++- ..++.+.+. ....+-+|||....+..+..+..++.. ++.+
T Consensus 523 p~f~IpG--RTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~v 600 (1042)
T KOG0924|consen 523 PQFTIPG--RTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAV 600 (1042)
T ss_pred ceeeecC--CccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEE
Confidence 3333322 22224444444443322 233334443 234578999999887777666655442 5678
Q ss_pred EEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecC------------------CCChhhHhhhcc
Q psy13286 221 YYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDF------------------PKMAETYLHRIG 282 (351)
Q Consensus 221 ~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~------------------p~s~~~~~q~~G 282 (351)
..+++.+|.+-+.++.+....|..+++|||++.+..+.+|++.+||.-+. |.|.+.-.||.|
T Consensus 601 lpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaG 680 (1042)
T KOG0924|consen 601 LPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAG 680 (1042)
T ss_pred EeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhcc
Confidence 99999999999999999999999999999999999999999999996443 567778899999
Q ss_pred ccccCCCceeEEEEecc
Q psy13286 283 RSGRYGHLGIAINLITY 299 (351)
Q Consensus 283 R~gR~~~~~~~i~~~~~ 299 (351)
||||. .+|.|+-+|.+
T Consensus 681 RAGRt-~pG~cYRlYTe 696 (1042)
T KOG0924|consen 681 RAGRT-GPGTCYRLYTE 696 (1042)
T ss_pred ccCCC-CCcceeeehhh
Confidence 99998 45899988876
No 137
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.61 E-value=2.8e-13 Score=132.26 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=82.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCC--CCEEEEec
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQA--VNVVINFD 269 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~--~~~Vi~~~ 269 (351)
.+++++|+++|.+..+.+++.|......+ ...|... .+..+++.|++++..||++|+.+-+|+|+|+ ...||...
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~k 722 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITR 722 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEec
Confidence 46899999999999999999997664443 3334222 2466899999998899999999999999973 55667777
Q ss_pred CCCC-h-----------------------------hhHhhhccccccCCCceeEEEEeccc--hHHHHHHHHHHh
Q psy13286 270 FPKM-A-----------------------------ETYLHRIGRSGRYGHLGIAINLITYE--DRYALHRIEKEL 312 (351)
Q Consensus 270 ~p~s-~-----------------------------~~~~q~~GR~gR~~~~~~~i~~~~~~--~~~~~~~l~~~l 312 (351)
+|.. + -.+.|.+||.-|...+--++++++.. ...+-+.+.+.+
T Consensus 723 LPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sL 797 (820)
T PRK07246 723 LPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASL 797 (820)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhC
Confidence 6621 1 13568889999986544455666654 233334444444
No 138
>KOG0951|consensus
Probab=99.59 E-value=1.6e-13 Score=131.75 Aligned_cols=287 Identities=16% Similarity=0.187 Sum_probs=197.5
Q ss_pred CcccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHH-HHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcE
Q psy13286 1 MVQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQ-ICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHL 77 (351)
Q Consensus 1 ~~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~I 77 (351)
+|.||+||| ..+-++.+.+.. ..+++++.|..+.+..++. |-+++....|..+..+.|......... ...+|
T Consensus 1163 ~vga~~gsgkt~~ae~a~l~~~~--~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~---~~~~v 1237 (1674)
T KOG0951|consen 1163 LVGAPNGSGKTACAELALLRPDT--IGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLL---QKGQV 1237 (1674)
T ss_pred EEecCCCCchhHHHHHHhcCCcc--ceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHh---hhcce
Confidence 477899996 444444444332 3699999999999987775 666676667899999999887655433 34789
Q ss_pred EEEccHHHHHHHhccCcCCCCccEEEEcccccccCcc------hHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc
Q psy13286 78 IIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQD------FKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL 151 (351)
Q Consensus 78 lv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~------~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 151 (351)
+|+||+++..+ . ....+++.|.||.|.+.... ..+ +..+...+-++.+++.+|..+...- ++ ...
T Consensus 1238 ii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~-d~--ig~ 1308 (1674)
T KOG0951|consen 1238 IISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANAR-DL--IGA 1308 (1674)
T ss_pred EEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccch-hh--ccc
Confidence 99999999655 2 46788999999999877432 112 5667777777888999988876542 22 222
Q ss_pred CCCeEEeeccccccCCceEEEEEcCcccHH--------HHHHHHHh-hCCCCcEEEEeCchHHHHHHHHHHHh-------
Q psy13286 152 KDPYEINLMEELTLKGVTQYYAFVQERQKV--------HCLNTLFS-KLQINQSIIFCNSTQRVELLAKKITE------- 215 (351)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--------~~l~~~l~-~~~~~~~lIf~~~~~~~~~l~~~L~~------- 215 (351)
.....+++.....+.+.......+....-. .....+.+ ...+.+++||++++++|..++..|-.
T Consensus 1309 s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~ 1388 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEP 1388 (1674)
T ss_pred cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcH
Confidence 233445555555555544444444332111 11222333 23567899999999999887766522
Q ss_pred -----------------cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEE-----ecC---
Q psy13286 216 -----------------LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVIN-----FDF--- 270 (351)
Q Consensus 216 -----------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~-----~~~--- 270 (351)
..+++. |.+++..+..-+.+.|..|.+.++|.... ..|+-... ..|+. ||.
T Consensus 1389 ~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~ 1464 (1674)
T KOG0951|consen 1389 DYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEH 1464 (1674)
T ss_pred HHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccc-eEEEEecceeeccccc
Confidence 123333 88999999999999999999999999877 88877654 33443 222
Q ss_pred ---CCChhhHhhhccccccCCCceeEEEEeccchHHHHHHH
Q psy13286 271 ---PKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRI 308 (351)
Q Consensus 271 ---p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l 308 (351)
+-+.....|+.|++.| .|.|+++.+..+.+.++++
T Consensus 1465 ~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1465 SYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred ccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 3457889999999998 4789999988887766553
No 139
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.59 E-value=7.6e-14 Score=114.59 Aligned_cols=158 Identities=32% Similarity=0.542 Sum_probs=118.4
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|.++||+| ..+++..+.... ..++++++|+..++.|+.+.+.++............++......+.....+.
T Consensus 28 ~i~~~~GsGKT~~~~~~~~~~~~~~~--~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (201)
T smart00487 28 ILAAPTGSGKTLAALLPALEALKRGK--GKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGK 105 (201)
T ss_pred EEECCCCCchhHHHHHHHHHHhcccC--CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCC
Confidence 467888886 223333333222 3689999999999999999998887655434444445544455555555555
Q ss_pred -cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 76 -HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 76 -~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
+++++|++.+.+.+........+++++|+||+|++....+...+..+....++..+++++|||++.........+..+.
T Consensus 106 ~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~ 185 (201)
T smart00487 106 TDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDP 185 (201)
T ss_pred CCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCC
Confidence 9999999999998887766678899999999999887567778888888887888999999999988888888877765
Q ss_pred eEEeec
Q psy13286 155 YEINLM 160 (351)
Q Consensus 155 ~~~~~~ 160 (351)
..+...
T Consensus 186 ~~~~~~ 191 (201)
T smart00487 186 VFIDVG 191 (201)
T ss_pred EEEeCC
Confidence 555443
No 140
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.56 E-value=8.5e-14 Score=107.71 Aligned_cols=137 Identities=31% Similarity=0.476 Sum_probs=101.3
Q ss_pred CcccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCc
Q psy13286 1 MVQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVH 76 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 76 (351)
+|.++||+| .+..+..+... ...+++++++|++.++.|+.+.+..+... +..+..+.+...............+
T Consensus 4 ~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (144)
T cd00046 4 LLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKTD 81 (144)
T ss_pred EEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCCC
Confidence 467899997 22222222222 23479999999999999999998887765 6778888887766665555567899
Q ss_pred EEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeC
Q psy13286 77 LIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATF 139 (351)
Q Consensus 77 Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 139 (351)
|+++|++.+...+.........++++|+||+|.+....+...............+++++|||+
T Consensus 82 i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 82 IVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred EEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 999999999888776655567889999999998877765543323344455677899999996
No 141
>KOG0926|consensus
Probab=99.56 E-value=2.2e-13 Score=125.55 Aligned_cols=285 Identities=17% Similarity=0.224 Sum_probs=175.3
Q ss_pred CcccccCCc---chhhhcc-cC--c-CCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEE--EEECCcchHHHHHHH
Q psy13286 1 MVQARQEPT---QFLYLNK-LT--P-AKITSKATLIIVPTRELALQTSQICIELAKHLNVKVM--VTTGGTNLRDDIMRI 71 (351)
Q Consensus 1 ~~~a~tgs~---~l~~l~~-l~--~-~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~ 71 (351)
+|+..|||| .+|-+-. .- . ....++-+=|--|.|.-|--++.....-+..++-.|. .-+.++ +
T Consensus 275 IIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~t--------i 346 (1172)
T KOG0926|consen 275 IICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGT--------I 346 (1172)
T ss_pred EEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEeccc--------c
Confidence 467789996 6664321 11 1 1122357778889998887776544322222343333 233332 1
Q ss_pred hCCCcEEEEccHHHHHHHhccCcCCCCccEEEEccccccc-C-cchHHHHH---HHHHhCCC------CCcEEEEEeeCc
Q psy13286 72 YQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLL-S-QDFKGMLD---HVISILPH------ERQILLYSATFP 140 (351)
Q Consensus 72 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~-~-~~~~~~~~---~~~~~~~~------~~~~i~~SaT~~ 140 (351)
.....|.++|-+.|++-+.+..+ +.+++.||+||||.=. + +-....+. .+...+.+ +..+|+||||+.
T Consensus 347 ~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLR 425 (1172)
T KOG0926|consen 347 GEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLR 425 (1172)
T ss_pred CCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEE
Confidence 24578999999999988877765 7899999999999411 1 11111122 22222222 567999999975
Q ss_pred chHHHHHHH---hcCCCeEEeeccccccCCceEEEE-EcCcccHHHH---HHHHHhhCCCCcEEEEeCchHHHHHHHHHH
Q psy13286 141 LTVKNFMEK---HLKDPYEINLMEELTLKGVTQYYA-FVQERQKVHC---LNTLFSKLQINQSIIFCNSTQRVELLAKKI 213 (351)
Q Consensus 141 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~---l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L 213 (351)
- .+|.+. |-..|-.+.+ .....++..++. .+..+...++ ...+-+..++|.+|||+-...++..+++.|
T Consensus 426 V--sDFtenk~LFpi~pPlikV--dARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kL 501 (1172)
T KOG0926|consen 426 V--SDFTENKRLFPIPPPLIKV--DARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKL 501 (1172)
T ss_pred e--cccccCceecCCCCceeee--ecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHH
Confidence 2 222221 1112222222 222223333333 2333323333 344445677899999999999999999999
Q ss_pred Hhc-----------------------------------------------------------------------------
Q psy13286 214 TEL----------------------------------------------------------------------------- 216 (351)
Q Consensus 214 ~~~----------------------------------------------------------------------------- 216 (351)
++.
T Consensus 502 RK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge 581 (1172)
T KOG0926|consen 502 RKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGE 581 (1172)
T ss_pred HhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCC
Confidence 762
Q ss_pred ----------------------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCC---
Q psy13286 217 ----------------------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFP--- 271 (351)
Q Consensus 217 ----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p--- 271 (351)
...|..+++-++.+.+.++.+.--.|..-.+|+|++.+..+.||++..||.-+..
T Consensus 582 ~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R 661 (1172)
T KOG0926|consen 582 PEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKER 661 (1172)
T ss_pred cccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhh
Confidence 0123444555556666666666667877889999999999999999999965542
Q ss_pred -----C----------ChhhHhhhccccccCCCceeEEEEecc
Q psy13286 272 -----K----------MAETYLHRIGRSGRYGHLGIAINLITY 299 (351)
Q Consensus 272 -----~----------s~~~~~q~~GR~gR~~~~~~~i~~~~~ 299 (351)
. |.++--||+|||||.| .|-||-+|+.
T Consensus 662 ~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 662 LYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred ccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 1 3445569999999984 5788888775
No 142
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=2.8e-13 Score=129.70 Aligned_cols=124 Identities=18% Similarity=0.209 Sum_probs=99.3
Q ss_pred cccHHHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCC
Q psy13286 177 ERQKVHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFT 254 (351)
Q Consensus 177 ~~~k~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 254 (351)
...|..++..-+.. ..+.|+||-|.|.+..+.+++.|...+++...++......+-.-+.++-+.| .|.|||++++
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAG 687 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAG 687 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcC
Confidence 34667666665543 3578999999999999999999999999887887765555544444554555 7889999999
Q ss_pred CCCCCC--------CCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchH
Q psy13286 255 RGIDVQ--------AVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDR 302 (351)
Q Consensus 255 ~G~di~--------~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~ 302 (351)
+|.||. +=-|||--..+.|..---|-.||+||.|.+|.+-.|++-+|.
T Consensus 688 RGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 688 RGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 999996 223788888899998899999999999999999998887763
No 143
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.54 E-value=9.2e-12 Score=116.74 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=79.0
Q ss_pred HHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc----CCccEEEEeCcCCCCCCC
Q psy13286 184 LNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS----GLCRNLVCSDLFTRGIDV 259 (351)
Q Consensus 184 l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~ilv~T~~~~~G~di 259 (351)
+..++... +++++|.+.|....+.+++.|...--......|..+ .+..+++.|+. |...||++|+.+-+|+|+
T Consensus 462 ~~~~~~~~-~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv 538 (636)
T TIGR03117 462 TAAILRKA-QGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDL 538 (636)
T ss_pred HHHHHHHc-CCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccccc
Confidence 34444444 468999999999999999999654222234445443 34567888887 478999999999999999
Q ss_pred --------C--CCCEEEEecCCCCh-------------------------hhHhhhccccccCCCc--eeEEEEeccc
Q psy13286 260 --------Q--AVNVVINFDFPKMA-------------------------ETYLHRIGRSGRYGHL--GIAINLITYE 300 (351)
Q Consensus 260 --------~--~~~~Vi~~~~p~s~-------------------------~~~~q~~GR~gR~~~~--~~~i~~~~~~ 300 (351)
| .+++||+..+|..+ -.+.|-+||.-|.... --++.+++..
T Consensus 539 ~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 539 THKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 3 37889988877321 1346888888887655 4455555544
No 144
>KOG1000|consensus
Probab=99.49 E-value=6e-12 Score=110.52 Aligned_cols=280 Identities=13% Similarity=0.178 Sum_probs=179.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhccCcCCCCccEEEE
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKILVL 104 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvVi 104 (351)
.-.||+||. ++-..|.+.|.+|+..... +....++..... .+.....|.|.+++.+..+-. -+....+.++|+
T Consensus 242 wplliVcPA-svrftWa~al~r~lps~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~ 314 (689)
T KOG1000|consen 242 WPLLIVCPA-SVRFTWAKALNRFLPSIHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIF 314 (689)
T ss_pred CcEEEEecH-HHhHHHHHHHHHhcccccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHH--HHhcccceEEEE
Confidence 357889998 5556777777777654332 434444443221 223346789999998855422 122355889999
Q ss_pred cccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCc-------------------chHHHHHHHhcCCCe---EEeec--
Q psy13286 105 DEADKLLSQDFKGMLDHVISILPHERQILLYSATFP-------------------LTVKNFMEKHLKDPY---EINLM-- 160 (351)
Q Consensus 105 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~-------------------~~~~~~~~~~~~~~~---~~~~~-- 160 (351)
||+|++.+..- ...+.+...+..-.+++++|+|+. +...++...|+.... ..+..
T Consensus 315 DEsH~Lk~skt-kr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~ 393 (689)
T KOG1000|consen 315 DESHMLKDSKT-KRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGC 393 (689)
T ss_pred echhhhhccch-hhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCC
Confidence 99998766432 224444444444456899999962 222334444443211 00000
Q ss_pred ------------------------cccccCCceEEEEEcCc-------------------------------------cc
Q psy13286 161 ------------------------EELTLKGVTQYYAFVQE-------------------------------------RQ 179 (351)
Q Consensus 161 ------------------------~~~~~~~~~~~~~~~~~-------------------------------------~~ 179 (351)
.+.++. -+.....+.. ..
T Consensus 394 tnl~EL~~lL~k~lMIRRlK~dvL~qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgia 472 (689)
T KOG1000|consen 394 TNLEELAALLFKRLMIRRLKADVLKQLPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIA 472 (689)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhCCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhccc
Confidence 001111 1122211111 01
Q ss_pred HHHHHHHHHhh------CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcC-CccE-EEEeC
Q psy13286 180 KVHCLNTLFSK------LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG-LCRN-LVCSD 251 (351)
Q Consensus 180 k~~~l~~~l~~------~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~i-lv~T~ 251 (351)
|...+.+.+.. .++.+.+|||........+...+.+++++...+.|..+...|....+.|... +..| +++-.
T Consensus 473 K~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsIt 552 (689)
T KOG1000|consen 473 KAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSIT 552 (689)
T ss_pred ccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEe
Confidence 12222232222 3467899999999999999999999999999999999999999999999864 3444 44557
Q ss_pred cCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEE--Eecc--chHHHHHHHHHHhc
Q psy13286 252 LFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAIN--LITY--EDRYALHRIEKELG 313 (351)
Q Consensus 252 ~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~--~~~~--~~~~~~~~l~~~l~ 313 (351)
+.+.|+++...+.|++..+++++.-++|.-.|++|.|++..+.+ |+.. -|...+..+.+.++
T Consensus 553 A~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~ 618 (689)
T KOG1000|consen 553 AAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLD 618 (689)
T ss_pred ecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999998754433 3322 25666677776654
No 145
>COG4889 Predicted helicase [General function prediction only]
Probab=99.46 E-value=3.2e-13 Score=125.66 Aligned_cols=94 Identities=21% Similarity=0.342 Sum_probs=76.8
Q ss_pred cEEEEeCchHHHHHHHHHHHh---------------cCCeEEEeccCCCHHHHHHHHH---HhhcCCccEEEEeCcCCCC
Q psy13286 195 QSIIFCNSTQRVELLAKKITE---------------LGYCCYYIHARMAQAHRNRVFH---DFRSGLCRNLVCSDLFTRG 256 (351)
Q Consensus 195 ~~lIf~~~~~~~~~l~~~L~~---------------~~~~~~~~~~~~~~~~r~~~~~---~f~~g~~~ilv~T~~~~~G 256 (351)
+.|-||.+.++...+++.+.. ..+.+....|.|+-.+|..... .|...+++||--...+++|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 678999999988888877743 1344566778899888855443 3456778888878899999
Q ss_pred CCCCCCCEEEEecCCCChhhHhhhccccccCC
Q psy13286 257 IDVQAVNVVINFDFPKMAETYLHRIGRSGRYG 288 (351)
Q Consensus 257 ~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~ 288 (351)
+|+|.++.||++++-.|....+|..||+.|..
T Consensus 542 VDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 542 VDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred CCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999963
No 146
>KOG0925|consensus
Probab=99.45 E-value=4.6e-12 Score=111.02 Aligned_cols=193 Identities=19% Similarity=0.306 Sum_probs=132.9
Q ss_pred CCCccEEEEccccc--ccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCeEEeeccccccCCceEEEE
Q psy13286 96 MDHCKILVLDEADK--LLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYA 173 (351)
Q Consensus 96 ~~~~~lvViDE~h~--~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (351)
+.+++.+|+||||. +..+-....++.+.... +..+++.+|||+. ...++.|+.++-.+.+.. ..++..+|.
T Consensus 157 l~~y~viiLDeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~---a~Kfq~yf~n~Pll~vpg---~~PvEi~Yt 229 (699)
T KOG0925|consen 157 LGRYGVIILDEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLD---AEKFQRYFGNAPLLAVPG---THPVEIFYT 229 (699)
T ss_pred cccccEEEechhhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccc---hHHHHHHhCCCCeeecCC---CCceEEEec
Confidence 68999999999994 11122334455555555 4788999999976 446777888877776655 233444554
Q ss_pred EcCcccHHHH-H---HHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc---------CCeEEEeccCCCHHHHHHHHHHhh
Q psy13286 174 FVQERQKVHC-L---NTLFSKLQINQSIIFCNSTQRVELLAKKITEL---------GYCCYYIHARMAQAHRNRVFHDFR 240 (351)
Q Consensus 174 ~~~~~~k~~~-l---~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~ 240 (351)
...+.+-++. + .++-....+|.+++|..+.++.+..++.+.+. ...+..+| +.++..+.+-..
T Consensus 230 ~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p 305 (699)
T KOG0925|consen 230 PEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAP 305 (699)
T ss_pred CCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCC
Confidence 4444443332 2 33333445788999999999999999988753 24566777 222233322221
Q ss_pred ---cC--CccEEEEeCcCCCCCCCCCCCEEEEecC------------------CCChhhHhhhccccccCCCceeEEEEe
Q psy13286 241 ---SG--LCRNLVCSDLFTRGIDVQAVNVVINFDF------------------PKMAETYLHRIGRSGRYGHLGIAINLI 297 (351)
Q Consensus 241 ---~g--~~~ilv~T~~~~~G~di~~~~~Vi~~~~------------------p~s~~~~~q~~GR~gR~~~~~~~i~~~ 297 (351)
+| ..+|+|+|.+.+..+.++++.+||.-++ |.|..+-.||.||+||. .+|+|+.++
T Consensus 306 ~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLY 384 (699)
T KOG0925|consen 306 EKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLY 384 (699)
T ss_pred cccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEee
Confidence 12 2579999999999999999999986444 56778889999999997 789999999
Q ss_pred ccc
Q psy13286 298 TYE 300 (351)
Q Consensus 298 ~~~ 300 (351)
.++
T Consensus 385 te~ 387 (699)
T KOG0925|consen 385 TEE 387 (699)
T ss_pred cHH
Confidence 863
No 147
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.43 E-value=6.2e-11 Score=118.01 Aligned_cols=121 Identities=12% Similarity=0.117 Sum_probs=88.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCC--eEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCC--CCEEEE
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGY--CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQA--VNVVIN 267 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~--~~~Vi~ 267 (351)
.+++++|+++|.+..+.+++.|..... +...+..++....|.++++.|+.++-.||++|..+.+|+|+|+ +++||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 357899999999999999999976432 2334455554456789999999998899999999999999996 478998
Q ss_pred ecCCCC-hh-----------------------------hHhhhccccccCCCceeEEEEeccc--hHHHHHHHHHHh
Q psy13286 268 FDFPKM-AE-----------------------------TYLHRIGRSGRYGHLGIAINLITYE--DRYALHRIEKEL 312 (351)
Q Consensus 268 ~~~p~s-~~-----------------------------~~~q~~GR~gR~~~~~~~i~~~~~~--~~~~~~~l~~~l 312 (351)
..+|.. +. .+.|.+||.-|...+.-++++++.. ...+=+.+-+.+
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhC
Confidence 887641 11 2368889999987665566666654 333334444444
No 148
>KOG0386|consensus
Probab=99.41 E-value=9.8e-13 Score=124.06 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=104.8
Q ss_pred ccHHHHHHHHHhhCC--CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCC---ccEEEEeCc
Q psy13286 178 RQKVHCLNTLFSKLQ--INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGL---CRNLVCSDL 252 (351)
Q Consensus 178 ~~k~~~l~~~l~~~~--~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~ilv~T~~ 252 (351)
..|+..+..++...+ +++++.||.-.....-+-..|.-.++....+.|....++|-..++.|+.-. ..+|.+|..
T Consensus 709 sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstra 788 (1157)
T KOG0386|consen 709 SGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRA 788 (1157)
T ss_pred ccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecc
Confidence 356777777776554 789999999999999999999988999999999999999999999998744 456889999
Q ss_pred CCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEe
Q psy13286 253 FTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLI 297 (351)
Q Consensus 253 ~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~ 297 (351)
.+.|+|+..++.||.||..|.+-...|+.-||.|.|+...+-++.
T Consensus 789 gglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 789 GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred cccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 999999999999999999999999999999999999876555543
No 149
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.35 E-value=3.2e-11 Score=113.46 Aligned_cols=283 Identities=11% Similarity=0.125 Sum_probs=177.1
Q ss_pred CcccccCCcchh-hhcccCcC-CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEE
Q psy13286 1 MVQARQEPTQFL-YLNKLTPA-KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78 (351)
Q Consensus 1 ~~~a~tgs~~l~-~l~~l~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Il 78 (351)
+|.||.|||--. ++..+... .....++|++...++|+.+....++...-. +... ....... . .-....+-+
T Consensus 53 vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~--Y~d~~~~--~--i~~~~~~rL 125 (824)
T PF02399_consen 53 VVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVN--YLDSDDY--I--IDGRPYDRL 125 (824)
T ss_pred EEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCC-ccee--eeccccc--c--ccccccCeE
Confidence 477888888443 33444333 134579999999999999999887544211 2211 1111110 0 001235778
Q ss_pred EEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHH-------HHHHhCCCCCcEEEEEeeCcchHHHHHHHhc
Q psy13286 79 IATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLD-------HVISILPHERQILLYSATFPLTVKNFMEKHL 151 (351)
Q Consensus 79 v~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~-------~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 151 (351)
+...++|.++.. ..+.++|+||+||+...+..-|.+.++ .+...+.....++++-|+++....++++...
T Consensus 126 ivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~R 202 (824)
T PF02399_consen 126 IVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCR 202 (824)
T ss_pred EEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhC
Confidence 888888877642 135679999999999877764443333 3444455667799999999999999999865
Q ss_pred CCCeEEeeccccccCCceEEEEEcC-------------------------------------cccHHHHHHHHHhhCC-C
Q psy13286 152 KDPYEINLMEELTLKGVTQYYAFVQ-------------------------------------ERQKVHCLNTLFSKLQ-I 193 (351)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~k~~~l~~~l~~~~-~ 193 (351)
.+.....+..+....+......... ..+.......++.... +
T Consensus 203 p~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~~g 282 (824)
T PF02399_consen 203 PDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLNAG 282 (824)
T ss_pred CCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHhCC
Confidence 4332222222222211111100000 0122344444555444 4
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCC--CEEEEecCC
Q psy13286 194 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAV--NVVINFDFP 271 (351)
Q Consensus 194 ~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~--~~Vi~~~~p 271 (351)
.++-||+++...++.+++..+.....+..+++..+..+. +. .++.+|++-|+++..|+++-.. +-++-|=-|
T Consensus 283 knIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~ 356 (824)
T PF02399_consen 283 KNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKP 356 (824)
T ss_pred CcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhceEEEEEecC
Confidence 567789999999999999999889999999887665422 22 4778999999999999998643 335544223
Q ss_pred --C--ChhhHhhhccccccCCCceeEEEEeccc
Q psy13286 272 --K--MAETYLHRIGRSGRYGHLGIAINLITYE 300 (351)
Q Consensus 272 --~--s~~~~~q~~GR~gR~~~~~~~i~~~~~~ 300 (351)
. +..+..|++||+ |.-.....+++++..
T Consensus 357 ~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 357 MSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDAS 388 (824)
T ss_pred CCCCCcHHHHHHHHHHH-HhhccCeEEEEEecc
Confidence 2 234578999998 765566666666654
No 150
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.33 E-value=5.1e-11 Score=113.20 Aligned_cols=132 Identities=11% Similarity=0.127 Sum_probs=87.0
Q ss_pred cCCcchhhhcc-cCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHHhC-CCcEEEE
Q psy13286 6 QEPTQFLYLNK-LTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRIYQ-KVHLIIA 80 (351)
Q Consensus 6 tgs~~l~~l~~-l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~-~~~Ilv~ 80 (351)
+||+.--++.. +......|+.+|+|+|...|+.|+...|++.+. +..+..++++.+..+. |..+.+ ..+|+|+
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViG 246 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVG 246 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEE
Confidence 47763332222 223333467899999999999999999977653 2568888888775433 333333 4789999
Q ss_pred ccHHHHHHHhccCcCCCCccEEEEcccccccCcc------hHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHH
Q psy13286 81 TPGRILDLMDKQVANMDHCKILVLDEADKLLSQD------FKGMLDHVISILPHERQILLYSATFPLTVKNFM 147 (351)
Q Consensus 81 Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~------~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 147 (351)
|...+ ..++.++++||+||-|.-.... ....+...... .....+++.|||++-......
T Consensus 247 tRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~-~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 247 TRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH-QHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred cceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-HcCCcEEEECCCCCHHHHHHH
Confidence 98887 3468899999999999543221 11223333333 356679999999886554333
No 151
>KOG0388|consensus
Probab=99.26 E-value=9.8e-11 Score=107.11 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=103.2
Q ss_pred ccHHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCC-ccEEEEeCcCC
Q psy13286 178 RQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGL-CRNLVCSDLFT 254 (351)
Q Consensus 178 ~~k~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~ilv~T~~~~ 254 (351)
..|+..|..++... .+.++|+|+.-.+...-+-+.|..+++....+.|.....+|..++.+|.... .-+|++|.+.+
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 35666666676644 3679999999999999999999999999999999999999999999998754 45678999999
Q ss_pred CCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEE
Q psy13286 255 RGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAIN 295 (351)
Q Consensus 255 ~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~ 295 (351)
.|+|+.+++.||+||..|++..=.|.+.||+|.|+...+.+
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtv 1147 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTV 1147 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceee
Confidence 99999999999999999999999999999999999765443
No 152
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.25 E-value=1.7e-11 Score=99.45 Aligned_cols=129 Identities=15% Similarity=0.098 Sum_probs=79.3
Q ss_pred CcccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEE----------E-ECCcchH
Q psy13286 1 MVQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMV----------T-TGGTNLR 65 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~----------~-~~~~~~~ 65 (351)
++++||||| .+.++..+.. ++++++|+..|+.|+.+.+..+.......... . .......
T Consensus 29 ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (184)
T PF04851_consen 29 LLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDIS 102 (184)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEE
T ss_pred EEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccc
Confidence 478999998 2212222222 99999999999999999996665432111000 0 1111111
Q ss_pred HHHHHHhCCCcEEEEccHHHHHHHhccC-----------cCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEE
Q psy13286 66 DDIMRIYQKVHLIIATPGRILDLMDKQV-----------ANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILL 134 (351)
Q Consensus 66 ~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~-----------~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ 134 (351)
..........+++++|.+.+........ .....+++||+||+|++....- ...+.. .....+++
T Consensus 103 ~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~---~~~i~~--~~~~~~l~ 177 (184)
T PF04851_consen 103 DKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSDSS---YREIIE--FKAAFILG 177 (184)
T ss_dssp HHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHHHH---HHHHHH--SSCCEEEE
T ss_pred cccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCHHH---HHHHHc--CCCCeEEE
Confidence 2222334578899999999977654311 2345778999999998766551 223333 45667999
Q ss_pred EEeeCc
Q psy13286 135 YSATFP 140 (351)
Q Consensus 135 ~SaT~~ 140 (351)
+||||.
T Consensus 178 lTATp~ 183 (184)
T PF04851_consen 178 LTATPF 183 (184)
T ss_dssp EESS-S
T ss_pred EEeCcc
Confidence 999985
No 153
>KOG4439|consensus
Probab=99.23 E-value=2.4e-10 Score=104.54 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=86.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc--CCccEEE-EeCcCCCCCCCCCCCEEEEec
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLV-CSDLFTRGIDVQAVNVVINFD 269 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~ilv-~T~~~~~G~di~~~~~Vi~~~ 269 (351)
..+++|...=.....-+...|+..|+....++|.....+|..+++.|+. |..+|++ +=...+.|+|+-+.+|+|..|
T Consensus 746 keK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvD 825 (901)
T KOG4439|consen 746 KEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVD 825 (901)
T ss_pred cceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEe
Confidence 4566666555566667778888889999999999999999999999975 5456654 447889999999999999999
Q ss_pred CCCChhhHhhhccccccCCCceeEEE
Q psy13286 270 FPKMAETYLHRIGRSGRYGHLGIAIN 295 (351)
Q Consensus 270 ~p~s~~~~~q~~GR~gR~~~~~~~i~ 295 (351)
+-|++.--.|.+.|+-|+|+...+++
T Consensus 826 lHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 826 LHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred cccCHHHHHHHHHHHHHhcccCceEE
Confidence 99999999999999999999876664
No 154
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.23 E-value=2.1e-10 Score=108.74 Aligned_cols=293 Identities=16% Similarity=0.166 Sum_probs=179.5
Q ss_pred ccccCC--cchhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEE
Q psy13286 3 QARQEP--TQFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIA 80 (351)
Q Consensus 3 ~a~tgs--~~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~ 80 (351)
.++||- ++.+.++....+..+ +.+.+++...-|+.--..|+.++..+.|+++.....+....+.... ..+||..+
T Consensus 99 EM~TGEGKTL~atlp~ylnaL~g-kgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek~~a--Y~~DItY~ 175 (822)
T COG0653 99 EMRTGEGKTLVATLPAYLNALAG-KGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAA--YACDITYG 175 (822)
T ss_pred eeecCCchHHHHHHHHHHHhcCC-CCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHHHHH--HhcCceec
Confidence 456666 466666665555555 7888899999999999999999999999999999998876655333 45999999
Q ss_pred ccHHH-HHHHhccCc------CCCCccEEEEcccccccCc----------------chHHHHHHHHHhCCC--------C
Q psy13286 81 TPGRI-LDLMDKQVA------NMDHCKILVLDEADKLLSQ----------------DFKGMLDHVISILPH--------E 129 (351)
Q Consensus 81 Tp~~l-~~~l~~~~~------~~~~~~lvViDE~h~~~~~----------------~~~~~~~~~~~~~~~--------~ 129 (351)
|...+ .++++.+.. ....+.+.|+||+|.++=+ .+...+..+...+.. .
T Consensus 176 TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek 255 (822)
T COG0653 176 TNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEK 255 (822)
T ss_pred cccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCchHHHHHHHHHHHhccccceeecch
Confidence 99999 556654422 2346889999999965310 111222222211111 0
Q ss_pred CcEE----------------------------------------------------------------------------
Q psy13286 130 RQIL---------------------------------------------------------------------------- 133 (351)
Q Consensus 130 ~~~i---------------------------------------------------------------------------- 133 (351)
.+.+
T Consensus 256 ~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQ 335 (822)
T COG0653 256 SKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQ 335 (822)
T ss_pred hcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHH
Confidence 1111
Q ss_pred ---------------------------------EEEeeCcchHHHHHHHhcCCCeEEeeccccccCCceEEEEEcCcccH
Q psy13286 134 ---------------------------------LYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQK 180 (351)
Q Consensus 134 ---------------------------------~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 180 (351)
++|+|......++..-|..+...+.+........... ..+.....|
T Consensus 336 AiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~iPTnrp~~R~D~~D-~vy~t~~~K 414 (822)
T COG0653 336 AIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVIPTNRPIIRLDEPD-LVYKTEEEK 414 (822)
T ss_pred HHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeeccCCCcccCCCCcc-ccccchHHH
Confidence 2222222222222222222211111111111111111 111222345
Q ss_pred HHHHHHHHh--hCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCC
Q psy13286 181 VHCLNTLFS--KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGID 258 (351)
Q Consensus 181 ~~~l~~~l~--~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d 258 (351)
...+...+. ...++|+||-+.+.+..+.+.+.|.+.+++...+...-...+-..+.+.-+.| .+-|||+++++|.|
T Consensus 415 ~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTD 492 (822)
T COG0653 415 FKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTD 492 (822)
T ss_pred HHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhcCCCC--ccccccccccCCcc
Confidence 555554443 34578999999999999999999999999988888876655544454444444 67899999999999
Q ss_pred CCCCC-----------EEEEecCCCChhhHhhhccccccCCCceeEEEEeccch
Q psy13286 259 VQAVN-----------VVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYED 301 (351)
Q Consensus 259 i~~~~-----------~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~ 301 (351)
|.--. +||--.--.|-.-=-|-.||+||.|.+|.+-.+++-+|
T Consensus 493 IkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 493 IKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred cccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 85222 23322222332223477899999999999888887765
No 155
>KOG1002|consensus
Probab=99.19 E-value=2e-09 Score=94.97 Aligned_cols=122 Identities=18% Similarity=0.251 Sum_probs=101.0
Q ss_pred cHHHHHHHHHh---hC-CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcC-CccE-EEEeCc
Q psy13286 179 QKVHCLNTLFS---KL-QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG-LCRN-LVCSDL 252 (351)
Q Consensus 179 ~k~~~l~~~l~---~~-~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~i-lv~T~~ 252 (351)
.|+++|..-+. .. ..-+.|||.........+.-.|.+.|+.+..+.|+|++..|...++.|.+. .+.| |++-.+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 45666654333 22 235789999999999999999999999999999999999999999999886 3555 455578
Q ss_pred CCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCc--eeEEEEeccc
Q psy13286 253 FTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHL--GIAINLITYE 300 (351)
Q Consensus 253 ~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~--~~~i~~~~~~ 300 (351)
.+..+|+..+++|+.+|+=|++.--+|...|.+|.|+- -.++.|+-++
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 88999999999999999999999999999999999874 5666676665
No 156
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.17 E-value=1.6e-09 Score=104.96 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=68.7
Q ss_pred EEEEeCchHHHHHHHHHHHhc------CCeEEEeccCCCHHHHHHHHHHh----------------------hc----CC
Q psy13286 196 SIIFCNSTQRVELLAKKITEL------GYCCYYIHARMAQAHRNRVFHDF----------------------RS----GL 243 (351)
Q Consensus 196 ~lIf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f----------------------~~----g~ 243 (351)
.+|-.+++..+-.+|+.|-.. .+..+++|+..+...|..+.+.+ ++ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 478888888888888877654 24578899998877777665443 12 46
Q ss_pred ccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCC
Q psy13286 244 CRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGH 289 (351)
Q Consensus 244 ~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~ 289 (351)
..|+|+|.+++.|+|+ +.+.+| .-|.+..+.+|++||+.|.+.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhccccccc
Confidence 7899999999999998 455544 445569999999999999865
No 157
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.09 E-value=4.1e-09 Score=106.07 Aligned_cols=117 Identities=20% Similarity=0.220 Sum_probs=101.2
Q ss_pred cHHHHHHHHH-h--hCCCC--cEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcC--CccEEEEeC
Q psy13286 179 QKVHCLNTLF-S--KLQIN--QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG--LCRNLVCSD 251 (351)
Q Consensus 179 ~k~~~l~~~l-~--~~~~~--~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~ilv~T~ 251 (351)
.|...+..++ . ...+. ++++|+.......-+...+...++....++|+++...|..+++.|.++ ..-+++++.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4566666666 2 22345 899999999999999999999998899999999999999999999986 456677778
Q ss_pred cCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEE
Q psy13286 252 LFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAIN 295 (351)
Q Consensus 252 ~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~ 295 (351)
+.+.|+|+..+++||++|+.|++....|...|+.|.|+...+.+
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v 815 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKV 815 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEE
Confidence 99999999999999999999999999999999999998765444
No 158
>KOG1015|consensus
Probab=99.07 E-value=4.2e-09 Score=99.50 Aligned_cols=116 Identities=18% Similarity=0.171 Sum_probs=95.7
Q ss_pred HHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHh----------------------cCCeEEEeccCCCHHHHHHHH
Q psy13286 181 VHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITE----------------------LGYCCYYIHARMAQAHRNRVF 236 (351)
Q Consensus 181 ~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~~~L~~----------------------~~~~~~~~~~~~~~~~r~~~~ 236 (351)
+-.|..+|+.. -+.+.|||..+......+-.+|.. .|.....+.|......|..+.
T Consensus 1128 miLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~ 1207 (1567)
T KOG1015|consen 1128 MILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWA 1207 (1567)
T ss_pred eehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHH
Confidence 34445555433 367999999999988888888854 245678899999999999999
Q ss_pred HHhhcCC----ccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEE
Q psy13286 237 HDFRSGL----CRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINL 296 (351)
Q Consensus 237 ~~f~~g~----~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~ 296 (351)
+.|++-. ...||+|.+.+.|+|+=+++.||+||..|+|..=+|-+=|+.|+|+..-|+++
T Consensus 1208 ~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1208 EEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9998742 35799999999999999999999999999999999999999999997666653
No 159
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.00 E-value=2.8e-10 Score=85.07 Aligned_cols=126 Identities=14% Similarity=0.190 Sum_probs=70.2
Q ss_pred ccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEE
Q psy13286 3 QARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78 (351)
Q Consensus 3 ~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Il 78 (351)
...+|+| .||-+ +.++...+.++|+|.|||.++.++.+.++ ..++++. ..-.. . ....+.-|-
T Consensus 10 d~hpGaGKTr~vlp~~--~~~~i~~~~rvLvL~PTRvva~em~~aL~----~~~~~~~--t~~~~-~----~~~g~~~i~ 76 (148)
T PF07652_consen 10 DLHPGAGKTRRVLPEI--VREAIKRRLRVLVLAPTRVVAEEMYEALK----GLPVRFH--TNARM-R----THFGSSIID 76 (148)
T ss_dssp E--TTSSTTTTHHHHH--HHHHHHTT--EEEEESSHHHHHHHHHHTT----TSSEEEE--STTSS---------SSSSEE
T ss_pred ecCCCCCCcccccHHH--HHHHHHccCeEEEecccHHHHHHHHHHHh----cCCcccC--ceeee-c----cccCCCccc
Confidence 3456665 56643 23344456899999999999988776653 2233332 11110 1 223456789
Q ss_pred EEccHHHHHHHhccCcCCCCccEEEEcccccccCcc---hHHHHHHHHHhCCCCCcEEEEEeeCcchHHH
Q psy13286 79 IATPGRILDLMDKQVANMDHCKILVLDEADKLLSQD---FKGMLDHVISILPHERQILLYSATFPLTVKN 145 (351)
Q Consensus 79 v~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~---~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 145 (351)
++|...+...+-+ .....+++++|+||+|. .+.. +...+... .. .....++++|||+|.....
T Consensus 77 vMc~at~~~~~~~-p~~~~~yd~II~DEcH~-~Dp~sIA~rg~l~~~-~~-~g~~~~i~mTATPPG~~~~ 142 (148)
T PF07652_consen 77 VMCHATYGHFLLN-PCRLKNYDVIIMDECHF-TDPTSIAARGYLREL-AE-SGEAKVIFMTATPPGSEDE 142 (148)
T ss_dssp EEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHHHHHHHHHHHHH-HH-TTS-EEEEEESS-TT---S
T ss_pred ccccHHHHHHhcC-cccccCccEEEEecccc-CCHHHHhhheeHHHh-hh-ccCeeEEEEeCCCCCCCCC
Confidence 9999999887665 44578999999999995 3322 22222222 11 2345799999999876543
No 160
>KOG2340|consensus
Probab=99.00 E-value=8.4e-09 Score=91.82 Aligned_cols=284 Identities=18% Similarity=0.236 Sum_probs=179.5
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCc---------eEEEEE----------------------CCcch--------
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNV---------KVMVTT----------------------GGTNL-------- 64 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~---------~v~~~~----------------------~~~~~-------- 64 (351)
++++|||||+|+-|-.+.+.+..++....- +...-+ |.+..
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 499999999999999999988887432211 011111 11110
Q ss_pred HHHHHHHh---CCCcEEEEccHHHHHHHhccC------cCCCCccEEEEcccccccCcchHHHHHHHHHhC---CC----
Q psy13286 65 RDDIMRIY---QKVHLIIATPGRILDLMDKQV------ANMDHCKILVLDEADKLLSQDFKGMLDHVISIL---PH---- 128 (351)
Q Consensus 65 ~~~~~~~~---~~~~Ilv~Tp~~l~~~l~~~~------~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~---~~---- 128 (351)
......+. ..+||+||+|=-|..++.+.. -.++.+.++|||.+|.++..+|.. +..+...+ |.
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEh-l~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEH-LLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHH-HHHHHHHhhcCcccccC
Confidence 01111121 268999999988877776321 136788999999999888777654 33333333 22
Q ss_pred -----------------CCcEEEEEeeCcchHHHHHHHhcCCCeEE-ee---ccc----cccCCceEEEEEc--C-----
Q psy13286 129 -----------------ERQILLYSATFPLTVKNFMEKHLKDPYEI-NL---MEE----LTLKGVTQYYAFV--Q----- 176 (351)
Q Consensus 129 -----------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~-~~---~~~----~~~~~~~~~~~~~--~----- 176 (351)
.+|.+++|+-..+....++..++.+-... .. ... ....++.+.+... .
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 24677777776666666666666542111 01 011 0011122222111 1
Q ss_pred cccHHHH-HHHHHhhCC---CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-
Q psy13286 177 ERQKVHC-LNTLFSKLQ---INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD- 251 (351)
Q Consensus 177 ~~~k~~~-l~~~l~~~~---~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~- 251 (351)
.+..... +..++.+.. ...+|||.++.-.--++...+++.++....++.-.++..-.+..+.|-.|...+|+-|.
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 1112221 122222221 34689999999999999999999988877777777777778888999999999999997
Q ss_pred -cCCCCCCCCCCCEEEEecCCCChh---hHhhhccccccCC----CceeEEEEeccchHHHHHHH
Q psy13286 252 -LFTRGIDVQAVNVVINFDFPKMAE---TYLHRIGRSGRYG----HLGIAINLITYEDRYALHRI 308 (351)
Q Consensus 252 -~~~~G~di~~~~~Vi~~~~p~s~~---~~~q~~GR~gR~~----~~~~~i~~~~~~~~~~~~~l 308 (351)
...+-.++.++..||.|.+|..|. +++.+.+|+.-.| ....|.++++..|.-.+..+
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 567788999999999999998875 4466777765444 23567778888876554433
No 161
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.88 E-value=5e-07 Score=90.17 Aligned_cols=284 Identities=13% Similarity=0.157 Sum_probs=153.9
Q ss_pred ccCCc---chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCC-CcEEEE
Q psy13286 5 RQEPT---QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQK-VHLIIA 80 (351)
Q Consensus 5 ~tgs~---~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~Ilv~ 80 (351)
-|||| .+..++.+.......+.+++|+-.++|-.|..+.+..+........ ...+..+....+... ..|+|+
T Consensus 281 tqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~~~~~ii~T 356 (962)
T COG0610 281 TQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLEDGKGKIIVT 356 (962)
T ss_pred ecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhcCCCcEEEE
Confidence 46776 3333334333335558999999999999999999999876543322 223333333334333 589999
Q ss_pred ccHHHHHHHhccC--cCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHH-HHHhcCCCeEE
Q psy13286 81 TPGRILDLMDKQV--ANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNF-MEKHLKDPYEI 157 (351)
Q Consensus 81 Tp~~l~~~l~~~~--~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~-~~~~~~~~~~~ 157 (351)
|.++|........ ....+=-.||+||||+.. ++.....+...+ ++...++||+||-..-... ....+++....
T Consensus 357 TIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~-~~a~~~gFTGTPi~~~d~~tt~~~fg~ylh~ 432 (962)
T COG0610 357 TIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKAL-KKAIFIGFTGTPIFKEDKDTTKDVFGDYLHT 432 (962)
T ss_pred EecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHh-ccceEEEeeCCccccccccchhhhhcceeEE
Confidence 9999987765531 111222378999999743 333334444444 3377999999984221111 11111111111
Q ss_pred -eeccccccCCc-eEEEEEcCc--------------------------------------------ccHHHH----HHHH
Q psy13286 158 -NLMEELTLKGV-TQYYAFVQE--------------------------------------------RQKVHC----LNTL 187 (351)
Q Consensus 158 -~~~~~~~~~~~-~~~~~~~~~--------------------------------------------~~k~~~----l~~~ 187 (351)
...+......+ +..|..... ...... ....
T Consensus 433 Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f 512 (962)
T COG0610 433 YTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRAAKDIYDHF 512 (962)
T ss_pred EecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHHHHHHHHHH
Confidence 11111111000 111111000 000000 0111
Q ss_pred Hh-hCCCCcEEEEeCchHHHHHHHHHHHhcCC---------------------eEEEe--ccCCCHHHHHHHHHH--hhc
Q psy13286 188 FS-KLQINQSIIFCNSTQRVELLAKKITELGY---------------------CCYYI--HARMAQAHRNRVFHD--FRS 241 (351)
Q Consensus 188 l~-~~~~~~~lIf~~~~~~~~~l~~~L~~~~~---------------------~~~~~--~~~~~~~~r~~~~~~--f~~ 241 (351)
.. ...+.++.+.+.++..+..+++....... .-... |.. ....+...... ...
T Consensus 513 ~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~ 591 (962)
T COG0610 513 KKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKDEKKDLIKRFKLKD 591 (962)
T ss_pred HhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHHHHhhhhhhhcCcC
Confidence 11 22356778888887755555544332200 00000 111 12222333344 345
Q ss_pred CCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccC--C--CceeEEEEec
Q psy13286 242 GLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRY--G--HLGIAINLIT 298 (351)
Q Consensus 242 g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~--~--~~~~~i~~~~ 298 (351)
..+++||.++++--|+|-|.+ +.+-.|-|...-..+|.+.|+.|. + ..|.++.|..
T Consensus 592 d~~kilIV~dmlLTGFDaP~L-~TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 592 DPLDLLIVVDMLLTGFDAPCL-NTLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred CCCCEEEEEccccccCCcccc-ceEEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 679999999999999999977 566777788888999999999996 3 2366666655
No 162
>KOG0391|consensus
Probab=98.79 E-value=5.9e-08 Score=93.74 Aligned_cols=123 Identities=17% Similarity=0.235 Sum_probs=107.4
Q ss_pred ccHHHHHHHHHhhCC--CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCC--ccEEEEeCcC
Q psy13286 178 RQKVHCLNTLFSKLQ--INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGL--CRNLVCSDLF 253 (351)
Q Consensus 178 ~~k~~~l~~~l~~~~--~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~ilv~T~~~ 253 (351)
+.|+..|.-+|++.+ +.++|||+.......-+-..|...|+....+.|....++|..+++.|+.+. ..+|++|...
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 467888888887654 789999999999999999999999999999999999999999999999876 4668899999
Q ss_pred CCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEE--EEeccc
Q psy13286 254 TRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAI--NLITYE 300 (351)
Q Consensus 254 ~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i--~~~~~~ 300 (351)
+.|+|+.+++.||+||..|++..=.|...|+.|.|+...+. -|+++.
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 99999999999999999999998888888888888765444 456654
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.70 E-value=3.4e-08 Score=86.60 Aligned_cols=113 Identities=22% Similarity=0.194 Sum_probs=71.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhc---cCcCCCCccE
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDK---QVANMDHCKI 101 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~---~~~~~~~~~l 101 (351)
..+|||+|. .+..||...+.++......++..+.|...............+++|+|++.+...... ..+...++++
T Consensus 59 ~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~ 137 (299)
T PF00176_consen 59 KKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDR 137 (299)
T ss_dssp S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEE
T ss_pred cceeEeecc-chhhhhhhhhccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccee
Confidence 469999999 888999999999986656788888777622222222334688999999999811000 0111245899
Q ss_pred EEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcc
Q psy13286 102 LVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPL 141 (351)
Q Consensus 102 vViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 141 (351)
||+||+|.+.+.. ......+..+. ....+++|||+-.
T Consensus 138 vIvDEaH~~k~~~--s~~~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 138 VIVDEAHRLKNKD--SKRYKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp EEETTGGGGTTTT--SHHHHHHHCCC-ECEEEEE-SS-SS
T ss_pred EEEeccccccccc--ccccccccccc-cceEEeecccccc
Confidence 9999999985544 22334444454 5567889999754
No 164
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.63 E-value=4.5e-06 Score=81.35 Aligned_cols=70 Identities=9% Similarity=0.061 Sum_probs=56.7
Q ss_pred HhCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCc
Q psy13286 71 IYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFP 140 (351)
Q Consensus 71 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 140 (351)
+.....|+++||..+...+-.+.+++..+..+||||||++....-...+..+....++.+-+.++|+.+.
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 3456789999999998877888889999999999999999776655566666666667777888888853
No 165
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.51 E-value=3.9e-07 Score=72.33 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=76.6
Q ss_pred HHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCC--eEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC--cCCCCCCCCC
Q psy13286 186 TLFSKLQINQSIIFCNSTQRVELLAKKITELGY--CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD--LFTRGIDVQA 261 (351)
Q Consensus 186 ~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~--~~~~G~di~~ 261 (351)
.+++..+ +.++||++|.+..+.+.+.++.... ....+.. ...++.++++.|+.++-.+|+++. .+.+|+|+|+
T Consensus 3 ~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 3444444 8899999999999999999976532 1123333 355778999999999999999998 9999999996
Q ss_pred --CCEEEEecCCCC-hh-----------------------------hHhhhccccccCCCceeEEEEeccc
Q psy13286 262 --VNVVINFDFPKM-AE-----------------------------TYLHRIGRSGRYGHLGIAINLITYE 300 (351)
Q Consensus 262 --~~~Vi~~~~p~s-~~-----------------------------~~~q~~GR~gR~~~~~~~i~~~~~~ 300 (351)
+++||..++|.. +. ...|.+||+-|..++--++++++..
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 678999998731 11 2357889999987776666676664
No 166
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.46 E-value=4.7e-06 Score=81.21 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=83.1
Q ss_pred HHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCCHHHHHHHHHHhhcCCc-cEEEEeCcCCCCCCCC
Q psy13286 183 CLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQAHRNRVFHDFRSGLC-RNLVCSDLFTRGIDVQ 260 (351)
Q Consensus 183 ~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~-~ilv~T~~~~~G~di~ 260 (351)
.+..++...+ ++++||++|.+.++.+++.+...... ....+|..+ +.+.++.|+.+.- .++|+|..+.+|+|+|
T Consensus 470 ~i~~~~~~~~-~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~ 545 (654)
T COG1199 470 YLREILKASP-GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFP 545 (654)
T ss_pred HHHHHHhhcC-CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCC
Confidence 3444444545 58999999999999999999877653 334444333 3477888877655 8999999999999999
Q ss_pred C--CCEEEEecCCCC------------------------------hhhHhhhccccccCCCceeEEEEeccc
Q psy13286 261 A--VNVVINFDFPKM------------------------------AETYLHRIGRSGRYGHLGIAINLITYE 300 (351)
Q Consensus 261 ~--~~~Vi~~~~p~s------------------------------~~~~~q~~GR~gR~~~~~~~i~~~~~~ 300 (351)
+ +++||..+.|.- .....|.+||+-|...+.-++++++..
T Consensus 546 g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 546 GDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred CCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEeccc
Confidence 6 468898888731 124579999999986665556666654
No 167
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.34 E-value=2.5e-05 Score=75.97 Aligned_cols=111 Identities=16% Similarity=0.262 Sum_probs=78.4
Q ss_pred HHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc-CCeEEEeccCCCHHHHHHHHHHhh----cCCccEEEEeCcCCCCCC
Q psy13286 184 LNTLFSKLQINQSIIFCNSTQRVELLAKKITEL-GYCCYYIHARMAQAHRNRVFHDFR----SGLCRNLVCSDLFTRGID 258 (351)
Q Consensus 184 l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~ilv~T~~~~~G~d 258 (351)
+..++. . ++.++|+++|.+..+.+++.|... +.. ....|. ..+..+++.|+ .|+..||++|..+.+|+|
T Consensus 527 i~~l~~-~-~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD 600 (697)
T PRK11747 527 LPELLE-K-HKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLD 600 (697)
T ss_pred HHHHHh-c-CCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEecccccccc
Confidence 334444 3 455899999999999999998753 333 233443 24567776666 467789999999999999
Q ss_pred CCC--CCEEEEecCCCC-hh-----------------------------hHhhhccccccCCCceeEEEEeccc
Q psy13286 259 VQA--VNVVINFDFPKM-AE-----------------------------TYLHRIGRSGRYGHLGIAINLITYE 300 (351)
Q Consensus 259 i~~--~~~Vi~~~~p~s-~~-----------------------------~~~q~~GR~gR~~~~~~~i~~~~~~ 300 (351)
+|+ +++||...+|.. +. .+.|.+||.-|...+--++++++..
T Consensus 601 ~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 601 LPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred CCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 996 678999887731 11 2358889999986654456666654
No 168
>KOG1016|consensus
Probab=98.28 E-value=0.00027 Score=66.70 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=86.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCC------------------eEEEeccCCCHHHHHHHHHHhhcC---CccEEEEeC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGY------------------CCYYIHARMAQAHRNRVFHDFRSG---LCRNLVCSD 251 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~------------------~~~~~~~~~~~~~r~~~~~~f~~g---~~~ilv~T~ 251 (351)
+.++|||..+......+.+.|.+..+ .-..+.|..+..+|++.++.|++. .+-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 34789999988888888888866422 234667888899999999999873 467899999
Q ss_pred cCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEE
Q psy13286 252 LFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINL 296 (351)
Q Consensus 252 ~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~ 296 (351)
....|+|+-..+.++.|+..|.+..=.|...|+-|.|+...|+++
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvY 843 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVY 843 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEE
Confidence 999999999999999999999999999999999999988776665
No 169
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.25 E-value=7.7e-05 Score=73.13 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=77.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCe------EEEeccCCCHHHHHHHHHHhhc----CCccEEEEe--CcCCCCCCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYC------CYYIHARMAQAHRNRVFHDFRS----GLCRNLVCS--DLFTRGIDVQ 260 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~------~~~~~~~~~~~~r~~~~~~f~~----g~~~ilv~T--~~~~~G~di~ 260 (351)
++.++||++|....+.+++.+...+.. -..+...-...++..+++.|+. |+-.||.|+ ..+.+|+|++
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~ 601 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFC 601 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCccccC
Confidence 478999999999999999888764321 1122222222567889999964 456799998 8999999999
Q ss_pred C--CCEEEEecCCC-Ch------------------------------hhHhhhccccccCCCceeEEEEeccc
Q psy13286 261 A--VNVVINFDFPK-MA------------------------------ETYLHRIGRSGRYGHLGIAINLITYE 300 (351)
Q Consensus 261 ~--~~~Vi~~~~p~-s~------------------------------~~~~q~~GR~gR~~~~~~~i~~~~~~ 300 (351)
+ +++||..++|. ++ ....|.+||+-|..++--++++++..
T Consensus 602 ~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~R 674 (705)
T TIGR00604 602 DDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDKR 674 (705)
T ss_pred CCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEehh
Confidence 7 68899999885 11 11248889999987665566666543
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.13 E-value=1.2e-05 Score=68.01 Aligned_cols=108 Identities=14% Similarity=0.175 Sum_probs=78.4
Q ss_pred CcccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEE
Q psy13286 1 MVQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78 (351)
Q Consensus 1 ~~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Il 78 (351)
|.|.+||=| ++..+.....+..+ ..+=|++.+..|+..=+++++.+.+.+|+++....++.+.......+ .++|+
T Consensus 94 laEm~TGEGKTli~~l~a~~~AL~G-~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~ 170 (266)
T PF07517_consen 94 LAEMKTGEGKTLIAALPAALNALQG-KGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAY--AADIV 170 (266)
T ss_dssp EEEESTTSHHHHHHHHHHHHHHTTS-S-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHH--HSSEE
T ss_pred eEEecCCCCcHHHHHHHHHHHHHhc-CCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHH--hCccc
Confidence 357788875 44444444455554 78889999999999999999999999999999999988754433332 47899
Q ss_pred EEccHHH-HHHHhccCc------CCCCccEEEEccccccc
Q psy13286 79 IATPGRI-LDLMDKQVA------NMDHCKILVLDEADKLL 111 (351)
Q Consensus 79 v~Tp~~l-~~~l~~~~~------~~~~~~lvViDE~h~~~ 111 (351)
.+|...+ .++|+.... ....++++||||+|.++
T Consensus 171 Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 171 YGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999 456654322 14688999999999764
No 171
>KOG0952|consensus
Probab=98.00 E-value=2.3e-06 Score=82.52 Aligned_cols=233 Identities=14% Similarity=0.147 Sum_probs=128.4
Q ss_pred cccccCCc--chhhhcccC-cCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEE
Q psy13286 2 VQARQEPT--QFLYLNKLT-PAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78 (351)
Q Consensus 2 ~~a~tgs~--~l~~l~~l~-~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Il 78 (351)
+-||||++ ..+-++... ....++.++++++|.++|+.+-.+..++.....|++++.+.|....... . ...++++
T Consensus 948 ~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~--~-v~~~~~~ 1024 (1230)
T KOG0952|consen 948 LGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDVK--A-VREADIV 1024 (1230)
T ss_pred hcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCChh--h-eecCceE
Confidence 55899996 222222222 2233347999999999999988877766666668999999998765522 2 2358999
Q ss_pred EEccHHHHHHHhccC--cCCCCccEEEEcccccccCcchHHHHHHHH-------HhCCCCCcEEEEEeeCcchHHHHHHH
Q psy13286 79 IATPGRILDLMDKQV--ANMDHCKILVLDEADKLLSQDFKGMLDHVI-------SILPHERQILLYSATFPLTVKNFMEK 149 (351)
Q Consensus 79 v~Tp~~l~~~l~~~~--~~~~~~~lvViDE~h~~~~~~~~~~~~~~~-------~~~~~~~~~i~~SaT~~~~~~~~~~~ 149 (351)
|+||+++....+++. ..+.+++++|+||.|.+.. +.++.+..+. .......+.+++|--+. ...++. .
T Consensus 1025 ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~-na~dla-~ 1101 (1230)
T KOG0952|consen 1025 ITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALA-NANDLA-D 1101 (1230)
T ss_pred EcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccccCccccCcchhhhhHhhhhh-ccHHHH-H
Confidence 999999988777543 2477899999999996544 4444433322 22233455666543332 222222 2
Q ss_pred hcCCCeEEeeccccccCCceEEE------EEcCcc--cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHH----HhcC
Q psy13286 150 HLKDPYEINLMEELTLKGVTQYY------AFVQER--QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKI----TELG 217 (351)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L----~~~~ 217 (351)
+++-...........+-....++ ..++.. .-...+..+....+..+++||+.++++...-+.-| ....
T Consensus 1102 wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li~~~~~~~ 1181 (1230)
T KOG0952|consen 1102 WLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIASCATED 1181 (1230)
T ss_pred HhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhHHhhccCCC
Confidence 22211111111111111111111 112211 11234455555666789999999988665433333 2222
Q ss_pred CeEEEeccCCCHHHHHHHHHHhhcC
Q psy13286 218 YCCYYIHARMAQAHRNRVFHDFRSG 242 (351)
Q Consensus 218 ~~~~~~~~~~~~~~r~~~~~~f~~g 242 (351)
-+..+++.+ ..+-+.++..-+..
T Consensus 1182 ~p~~fl~~d--e~e~e~~~~~~~d~ 1204 (1230)
T KOG0952|consen 1182 NPKQFLNMD--ELELEIIMSKVRDT 1204 (1230)
T ss_pred CchhccCCC--HHHHHHHHHHhccc
Confidence 333444443 44444444444443
No 172
>KOG1001|consensus
Probab=97.87 E-value=4.1e-05 Score=73.15 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=88.8
Q ss_pred cEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCC-ccE-EEEeCcCCCCCCCCCCCEEEEecCCC
Q psy13286 195 QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGL-CRN-LVCSDLFTRGIDVQAVNVVINFDFPK 272 (351)
Q Consensus 195 ~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~i-lv~T~~~~~G~di~~~~~Vi~~~~p~ 272 (351)
+++||+.-..-+.-+...|...+.....+.|.|+...|.+....|..+. ..+ +++......|+|+..+.||+..|+=|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 8999999999999999999888888899999999999999999998653 333 45667889999999999999999999
Q ss_pred ChhhHhhhccccccCCCceeEEE
Q psy13286 273 MAETYLHRIGRSGRYGHLGIAIN 295 (351)
Q Consensus 273 s~~~~~q~~GR~gR~~~~~~~i~ 295 (351)
++...-|.+-|+.|.|+...+.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999998755544
No 173
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.75 E-value=0.0001 Score=64.02 Aligned_cols=47 Identities=11% Similarity=-0.020 Sum_probs=33.6
Q ss_pred CcccccCCc-----chhhhcccCcCCC--CCceEEEEcCCHHHHHHHHHHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKI--TSKATLIIVPTRELALQTSQICIEL 47 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~ 47 (351)
+++||||+| ++|++..+..... .+.++++.++|..+..|....+++.
T Consensus 31 ~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 31 ILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred EEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 579999997 5555544332222 2348999999999999987777665
No 174
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.75 E-value=0.0001 Score=64.02 Aligned_cols=47 Identities=11% Similarity=-0.020 Sum_probs=33.6
Q ss_pred CcccccCCc-----chhhhcccCcCCC--CCceEEEEcCCHHHHHHHHHHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKI--TSKATLIIVPTRELALQTSQICIEL 47 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~ 47 (351)
+++||||+| ++|++..+..... .+.++++.++|..+..|....+++.
T Consensus 31 ~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 31 ILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred EEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 579999997 5555544332222 2348999999999999987777665
No 175
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.60 E-value=0.00076 Score=51.64 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=39.3
Q ss_pred EEeccCCCHHHHHHHHHHhhcCC-ccEEEEeCcCCCCCCCCC--CCEEEEecCCC
Q psy13286 221 YYIHARMAQAHRNRVFHDFRSGL-CRNLVCSDLFTRGIDVQA--VNVVINFDFPK 272 (351)
Q Consensus 221 ~~~~~~~~~~~r~~~~~~f~~g~-~~ilv~T~~~~~G~di~~--~~~Vi~~~~p~ 272 (351)
..+..+....+...+++.|+... ..||+++..+.+|+|+|+ +++||..++|.
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 34444455556788899998754 379999988999999997 56899888773
No 176
>KOG0391|consensus
Probab=97.58 E-value=0.00016 Score=70.92 Aligned_cols=128 Identities=17% Similarity=0.175 Sum_probs=82.9
Q ss_pred ccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHh---CCCcEEE
Q psy13286 5 RQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIY---QKVHLII 79 (351)
Q Consensus 5 ~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~Ilv 79 (351)
.=|++ .+.+|+++.=....=+--|||+||..+. .|.-.|++|+. ++++..++|..+.++....=+ +-.+|.|
T Consensus 644 GLGKTIQtISllAhLACeegnWGPHLIVVpTsviL-nWEMElKRwcP--glKILTYyGs~kErkeKRqgW~kPnaFHVCI 720 (1958)
T KOG0391|consen 644 GLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVIL-NWEMELKRWCP--GLKILTYYGSHKERKEKRQGWAKPNAFHVCI 720 (1958)
T ss_pred cccchhHHHHHHHHHHhcccCCCCceEEeechhhh-hhhHHHhhhCC--cceEeeecCCHHHHHHHhhcccCCCeeEEee
Confidence 33454 4556666543333335678899996654 67777888876 789999999988765543322 3478999
Q ss_pred EccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCc
Q psy13286 80 ATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFP 140 (351)
Q Consensus 80 ~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 140 (351)
+++..+..-+. .+.-.++.++|+||+|.+.+.... .+..++ .++ .-+.+++|.|+-
T Consensus 721 tSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnfksq-rWQAll-nfn-sqrRLLLtgTPL 776 (1958)
T KOG0391|consen 721 TSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNFKSQ-RWQALL-NFN-SQRRLLLTGTPL 776 (1958)
T ss_pred hhhHHHHhHHH--HHHhhccceeehhhhhhhcchhHH-HHHHHh-ccc-hhheeeecCCch
Confidence 99988866443 222457789999999998776432 233332 222 223677888864
No 177
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.57 E-value=0.00022 Score=59.65 Aligned_cols=87 Identities=20% Similarity=0.282 Sum_probs=69.0
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCc-chHHHHHHHhC-CCcEEEEccHHHHHHHhccCcCCCC
Q psy13286 21 KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGT-NLRDDIMRIYQ-KVHLIIATPGRILDLMDKQVANMDH 98 (351)
Q Consensus 21 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~ 98 (351)
..+.|.+|||+.+--.|.++.+.++.+.. .+..|..+++-. +..++...+.. ..+|.||||+++..+++.+.+.++.
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 34469999999999999888877776631 134555556554 66777777654 7899999999999999999999999
Q ss_pred ccEEEEcccc
Q psy13286 99 CKILVLDEAD 108 (351)
Q Consensus 99 ~~lvViDE~h 108 (351)
+.+||+|--|
T Consensus 202 l~~ivlD~s~ 211 (252)
T PF14617_consen 202 LKRIVLDWSY 211 (252)
T ss_pred CeEEEEcCCc
Confidence 9999999876
No 178
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.50 E-value=0.00079 Score=51.66 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCC---eEEEeccCCCHHHHHHHHHHhhcCCc---cEEEEeCc--CCCCCCCCC--CCEEEEecCCCC--
Q psy13286 206 VELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLC---RNLVCSDL--FTRGIDVQA--VNVVINFDFPKM-- 273 (351)
Q Consensus 206 ~~~l~~~L~~~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~---~ilv~T~~--~~~G~di~~--~~~Vi~~~~p~s-- 273 (351)
.+.+++.++..+. ....+..+....+..++++.|++..- .||+++.- +.+|+|+|+ +++||..++|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 3455555554432 12233333333344678888887543 68888765 999999997 578999887731
Q ss_pred --h---------------------------hhHhhhccccccCCCceeEEEEecc
Q psy13286 274 --A---------------------------ETYLHRIGRSGRYGHLGIAINLITY 299 (351)
Q Consensus 274 --~---------------------------~~~~q~~GR~gR~~~~~~~i~~~~~ 299 (351)
+ ....|.+||+-|..++--++++++.
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 1 1224777888887665445555543
No 179
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.39 E-value=0.00057 Score=58.02 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=50.0
Q ss_pred HHHHHhhcCCccEEEEeCcCCCCCCCCC--------CCEEEEecCCCChhhHhhhccccccCCCc
Q psy13286 234 RVFHDFRSGLCRNLVCSDLFTRGIDVQA--------VNVVINFDFPKMAETYLHRIGRSGRYGHL 290 (351)
Q Consensus 234 ~~~~~f~~g~~~ilv~T~~~~~G~di~~--------~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~ 290 (351)
...+.|.+|+..|+|.+++.+.|+.+.+ -++-|...+|||.+..+|.+||++|.|+.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 5678999999999999999999999853 23567889999999999999999999884
No 180
>KOG0921|consensus
Probab=97.13 E-value=0.0014 Score=63.13 Aligned_cols=105 Identities=18% Similarity=0.327 Sum_probs=77.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc-------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEE
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL-------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVV 265 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~V 265 (351)
.+-+++|.+-=.....+..++... .+.....|+.....++.++.+....|..++++.|.+.+-.+.+-++..|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 567899999988888888888553 3456677888888887888877778999999999988887777665555
Q ss_pred EEecCC------------------CChhhHhhhccccccCCCceeEEEEec
Q psy13286 266 INFDFP------------------KMAETYLHRIGRSGRYGHLGIAINLIT 298 (351)
Q Consensus 266 i~~~~p------------------~s~~~~~q~~GR~gR~~~~~~~i~~~~ 298 (351)
+..+.- .|.....|+.||+||. ..|.|..+++
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 543321 2456778999999987 4566655544
No 181
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.00 E-value=0.0029 Score=62.70 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=56.8
Q ss_pred CccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccC-----CC----cee-EEEEeccchHHHHHHHHHHh
Q psy13286 243 LCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRY-----GH----LGI-AINLITYEDRYALHRIEKEL 312 (351)
Q Consensus 243 ~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~-----~~----~~~-~i~~~~~~~~~~~~~l~~~l 312 (351)
..+++++..++.+|-|-|++=.+.-+....|...-.|.+||..|. |. ... -.++.++........|++.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 578999999999999999998888888888988999999999996 21 122 23456666777777777776
Q ss_pred ccc
Q psy13286 313 GTE 315 (351)
Q Consensus 313 ~~~ 315 (351)
+.+
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 554
No 182
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.85 E-value=0.019 Score=55.45 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=56.4
Q ss_pred CccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccC--CCce-----------eEEEEeccchHHHHHHHH
Q psy13286 243 LCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRY--GHLG-----------IAINLITYEDRYALHRIE 309 (351)
Q Consensus 243 ~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~--~~~~-----------~~i~~~~~~~~~~~~~l~ 309 (351)
..+++.+.-++-+|-|=|+|=.++-+....|..+=.|.+||..|. ++.| .-.+++++.+...+..++
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 478899999999999999998888899999999999999999995 2222 233567777777777776
Q ss_pred HHhcc
Q psy13286 310 KELGT 314 (351)
Q Consensus 310 ~~l~~ 314 (351)
+.++.
T Consensus 563 kEI~~ 567 (985)
T COG3587 563 KEIND 567 (985)
T ss_pred HHHHH
Confidence 65543
No 183
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.64 E-value=0.0048 Score=52.81 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=69.8
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhcc---CcC-----
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQ---VAN----- 95 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~---~~~----- 95 (351)
.+++|.+..+..|-....+.++.++.. .+.+..+..-... + ...-.-.|+.+|+..|..--... ...
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~-~---~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~ 165 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG-D---IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLV 165 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhccC-c---CCCCCCCccchhHHHHHhHHhccCCccchHHHHH
Confidence 368999999999998888887776543 3333333321110 0 01123569999999886553211 000
Q ss_pred ----CCCccEEEEcccccccCcchH--------HHHHHHHHhCCCCCcEEEEEeeCcchHHH
Q psy13286 96 ----MDHCKILVLDEADKLLSQDFK--------GMLDHVISILPHERQILLYSATFPLTVKN 145 (351)
Q Consensus 96 ----~~~~~lvViDE~h~~~~~~~~--------~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 145 (351)
-..=.+||+||+|...+..-. .....+...+| +.+++.+|||...+..+
T Consensus 166 ~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep~N 226 (303)
T PF13872_consen 166 DWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASEPRN 226 (303)
T ss_pred HHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCCCce
Confidence 122258999999988765321 23334555564 45599999997765443
No 184
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.51 E-value=0.0066 Score=59.47 Aligned_cols=38 Identities=18% Similarity=0.100 Sum_probs=28.5
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTS 41 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~ 41 (351)
+|+|+||+| ++|.+.. +...+++++|=+.|+.|-+|+.
T Consensus 53 viEAgTGtGKTlaYLlPai~~---A~~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 53 VIEAGTGVGKTLSYLLAGIPI---ARAEKKKLVISTATVALQEQLV 95 (697)
T ss_pred EEECCCCcchhHHHHHHHHHH---HHHcCCeEEEEcCCHHHHHHHH
Confidence 479999997 6665432 2233478999999999999986
No 185
>KOG0701|consensus
Probab=96.51 E-value=0.0023 Score=66.25 Aligned_cols=93 Identities=20% Similarity=0.362 Sum_probs=77.1
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcC-CeEEEeccCCC-----------HHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCC
Q psy13286 194 NQSIIFCNSTQRVELLAKKITELG-YCCYYIHARMA-----------QAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQA 261 (351)
Q Consensus 194 ~~~lIf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~-----------~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~ 261 (351)
-..++|++.+..+....+.++... ..+..+.|.+. ...+.+++..|....+++|++|.++.+|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 357899999999999999887763 33344555443 224667899999999999999999999999999
Q ss_pred CCEEEEecCCCChhhHhhhcccccc
Q psy13286 262 VNVVINFDFPKMAETYLHRIGRSGR 286 (351)
Q Consensus 262 ~~~Vi~~~~p~s~~~~~q~~GR~gR 286 (351)
++.++.++.|....+|+|..||+-+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~ 397 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARA 397 (1606)
T ss_pred hhhheeccCcchHHHHHHhhccccc
Confidence 9999999999999999999999844
No 186
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.29 E-value=0.03 Score=54.89 Aligned_cols=79 Identities=13% Similarity=0.200 Sum_probs=66.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-cCCCCCCCCCCCEEE
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD-LFTRGIDVQAVNVVI 266 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~G~di~~~~~Vi 266 (351)
.+.++++.++++.-|...++.+++. ++.+..++|+++..+|.++++.+.+|+.+|+|+|. .+...+.++++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 4668999999999998887777654 68899999999999999999999999999999996 455567788888877
Q ss_pred EecC
Q psy13286 267 NFDF 270 (351)
Q Consensus 267 ~~~~ 270 (351)
.-..
T Consensus 389 IDE~ 392 (681)
T PRK10917 389 IDEQ 392 (681)
T ss_pred Eech
Confidence 5443
No 187
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.02 E-value=0.014 Score=52.47 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=49.8
Q ss_pred cccCCcchhh--hcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEc
Q psy13286 4 ARQEPTQFLY--LNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIAT 81 (351)
Q Consensus 4 a~tgs~~l~~--l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~T 81 (351)
|.||+++|++ +..+ .....+.+++++++...|...+...+.+-.. .......+..
T Consensus 10 aGTGKTvla~~l~~~l-~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------------------~~~~~~~~~~ 66 (352)
T PF09848_consen 10 AGTGKTVLALNLAKEL-QNSEEGKKVLYLCGNHPLRNKLREQLAKKYN----------------------PKLKKSDFRK 66 (352)
T ss_pred CCcCHHHHHHHHHHHh-hccccCCceEEEEecchHHHHHHHHHhhhcc----------------------cchhhhhhhh
Confidence 4455555443 3333 2233457899999999999877766643320 0001122334
Q ss_pred cHHHHHHHhccCcCCCCccEEEEcccccccC
Q psy13286 82 PGRILDLMDKQVANMDHCKILVLDEADKLLS 112 (351)
Q Consensus 82 p~~l~~~l~~~~~~~~~~~lvViDE~h~~~~ 112 (351)
+..+...+.........+++|||||||++..
T Consensus 67 ~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 67 PTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 4444333322223467899999999999987
No 188
>KOG0298|consensus
Probab=95.96 E-value=0.019 Score=57.66 Aligned_cols=118 Identities=16% Similarity=0.061 Sum_probs=75.3
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhccC---------
Q psy13286 23 TSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQV--------- 93 (351)
Q Consensus 23 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--------- 93 (351)
..+-+|||+|. ++.-||..++.+-.... +++....|-.+..-......-++||+++|++.|..-+.+..
T Consensus 419 ~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR 496 (1394)
T KOG0298|consen 419 ETGATLIICPN-AILMQWFEEIHKHISSL-LKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLR 496 (1394)
T ss_pred ecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhh
Confidence 34789999999 67779998888777654 78888888765322222223469999999999955443210
Q ss_pred -----cCC-C-----CccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHH
Q psy13286 94 -----ANM-D-----HCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKN 145 (351)
Q Consensus 94 -----~~~-~-----~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 145 (351)
..+ + .+=-|++|||+++-. .......+...++... .-.+|+||-..+.+
T Consensus 497 ~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS~~a~M~~rL~~in-~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 497 HQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSSAAAEMVRRLHAIN-RWCVTGTPIQKIDD 556 (1394)
T ss_pred cccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHHHHHHHHHHhhhhc-eeeecCCchhhhhh
Confidence 000 1 111379999996544 3345556666654332 56789997554443
No 189
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.74 E-value=0.034 Score=46.47 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=30.6
Q ss_pred CcccccCCc----chhhhcccC-----cCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy13286 1 MVQARQEPT----QFLYLNKLT-----PAKITSKATLIIVPTRELALQTSQICIE 46 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~-----~~~~~~~~~lil~P~~~L~~q~~~~~~~ 46 (351)
+|+.|.|+| +..++..+. .....++++|+++|+..-+.++.+.+.+
T Consensus 21 ~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 21 LIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp EEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred EEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 467887776 333444442 1244558999999999999999988877
No 190
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.74 E-value=0.062 Score=52.29 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=65.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-cCCCCCCCCCCCEEE
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD-LFTRGIDVQAVNVVI 266 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~G~di~~~~~Vi 266 (351)
.+.++++.+|++.-|...++.+++. ++.+..++|+++..+|..+.+...+|+.+|+|+|. .+...+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 4568999999999999888777654 68999999999999999999999999999999996 444567777888777
Q ss_pred Eec
Q psy13286 267 NFD 269 (351)
Q Consensus 267 ~~~ 269 (351)
.-.
T Consensus 363 IDE 365 (630)
T TIGR00643 363 IDE 365 (630)
T ss_pred Eec
Confidence 544
No 191
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.62 E-value=0.0092 Score=58.41 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=32.1
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIEL 47 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 47 (351)
+++||||+| ++|.+.. +...+++++|.++|+.|-.|..+....+
T Consensus 38 ~iEapTGtGKTl~yL~~al~~---~~~~~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 38 LIEAPTGTGKTLAYLLPALAY---AREEGKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred EEECCCCccHHHHHHHHHHHH---HHHcCCcEEEECCCHHHHHHHHHhhcch
Confidence 579999997 4444433 2233379999999999999998766554
No 192
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.60 E-value=0.13 Score=50.40 Aligned_cols=91 Identities=9% Similarity=0.104 Sum_probs=69.6
Q ss_pred cHHHHHHHHHh--hCCCCcEEEEeCchHHHHHHHHHHHhc-CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCC
Q psy13286 179 QKVHCLNTLFS--KLQINQSIIFCNSTQRVELLAKKITEL-GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTR 255 (351)
Q Consensus 179 ~k~~~l~~~l~--~~~~~~~lIf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~ 255 (351)
.|......++. ...+.++||.+++++.+..+++.|++. +..+..+||+++..+|.+......+|..+|+|+|.....
T Consensus 174 GKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~ 253 (679)
T PRK05580 174 GKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF 253 (679)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc
Confidence 45544433332 123568999999999999999999774 788999999999999999999999999999999974322
Q ss_pred CCCCCCCCEEEEecC
Q psy13286 256 GIDVQAVNVVINFDF 270 (351)
Q Consensus 256 G~di~~~~~Vi~~~~ 270 (351)
..++++..||.-+.
T Consensus 254 -~p~~~l~liVvDEe 267 (679)
T PRK05580 254 -LPFKNLGLIIVDEE 267 (679)
T ss_pred -ccccCCCEEEEECC
Confidence 45667777776553
No 193
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.53 E-value=0.13 Score=48.47 Aligned_cols=78 Identities=5% Similarity=0.098 Sum_probs=64.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc-CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL-GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDF 270 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~ 270 (351)
.++++|+.++++.-+..+++.|++. +..+..+|++++..+|.+......+|+.+|+|+|...-. ..++++..||.-+.
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDEe 102 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDEE 102 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEECC
Confidence 3568999999999999999999764 678899999999999999999999999999999974332 34667777775543
No 194
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.51 E-value=0.065 Score=53.04 Aligned_cols=72 Identities=13% Similarity=0.191 Sum_probs=59.8
Q ss_pred HHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcC-----CeEEE-eccCCCHHHHHHHHHHhhcCCccEEEEeCc
Q psy13286 181 VHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELG-----YCCYY-IHARMAQAHRNRVFHDFRSGLCRNLVCSDL 252 (351)
Q Consensus 181 ~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 252 (351)
.-.+..+.-..++.++++.+||..-+..+++.|++.. ..+.. +|+.++..++++.++.|.+|..+|||+|..
T Consensus 113 fg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 113 FGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 4455666667777999999999999998888887652 33333 899999999999999999999999999974
No 195
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.38 E-value=0.18 Score=49.11 Aligned_cols=92 Identities=16% Similarity=0.145 Sum_probs=73.0
Q ss_pred ccHHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhc-C-CeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcC
Q psy13286 178 RQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITEL-G-YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLF 253 (351)
Q Consensus 178 ~~k~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~~~L~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~ 253 (351)
..|.+....++... .++++||.++....+..+.+.|+.. + ..+..+|++++..+|.+......+|+.+|+|+|...
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 35666666666432 3667999999999999999999876 3 678999999999999999999999999999999753
Q ss_pred CCCCCCCCCCEEEEecC
Q psy13286 254 TRGIDVQAVNVVINFDF 270 (351)
Q Consensus 254 ~~G~di~~~~~Vi~~~~ 270 (351)
.. .-+++...||..+-
T Consensus 251 vF-aP~~~LgLIIvdEE 266 (665)
T PRK14873 251 VF-APVEDLGLVAIWDD 266 (665)
T ss_pred EE-eccCCCCEEEEEcC
Confidence 32 35566777776554
No 196
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.27 E-value=0.12 Score=52.32 Aligned_cols=79 Identities=11% Similarity=0.143 Sum_probs=65.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-cCCCCCCCCCCCEEE
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD-LFTRGIDVQAVNVVI 266 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~G~di~~~~~Vi 266 (351)
.+.+++|.+|++.-|...++.+++. ++.+..++|..+..++.++.+.+.+|+.+|+|+|. .+...+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4578999999999999988887764 57788899999999999999999999999999996 455567788888877
Q ss_pred EecC
Q psy13286 267 NFDF 270 (351)
Q Consensus 267 ~~~~ 270 (351)
.-..
T Consensus 579 IDEa 582 (926)
T TIGR00580 579 IDEE 582 (926)
T ss_pred eecc
Confidence 5443
No 197
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.03 E-value=0.089 Score=43.47 Aligned_cols=76 Identities=22% Similarity=0.232 Sum_probs=46.4
Q ss_pred chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC-CceE--EEEECCcchHH----HH----HHHhCCCcEE
Q psy13286 10 QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL-NVKV--MVTTGGTNLRD----DI----MRIYQKVHLI 78 (351)
Q Consensus 10 ~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v--~~~~~~~~~~~----~~----~~~~~~~~Il 78 (351)
++|++..+..... .-+.+++|. +|..|..+.+++-.... +-++ ..+.-..+... .. ........|+
T Consensus 58 I~Pmla~~LAdg~--~LvrviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gil 134 (229)
T PF12340_consen 58 IVPMLALALADGS--RLVRVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGIL 134 (229)
T ss_pred HHHHHHHHHcCCC--cEEEEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 8888888765444 366677776 79999998887765433 3222 23333333211 11 1222357799
Q ss_pred EEccHHHHHH
Q psy13286 79 IATPGRILDL 88 (351)
Q Consensus 79 v~Tp~~l~~~ 88 (351)
++||+.++.+
T Consensus 135 l~~PEhilSf 144 (229)
T PF12340_consen 135 LATPEHILSF 144 (229)
T ss_pred EeChHHHHHH
Confidence 9999999654
No 198
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.01 E-value=0.19 Score=47.84 Aligned_cols=85 Identities=15% Similarity=0.217 Sum_probs=67.6
Q ss_pred HHHHHhhC-CCCcEEEEeCchH----HHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-CCCCC
Q psy13286 184 LNTLFSKL-QINQSIIFCNSTQ----RVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-FTRGI 257 (351)
Q Consensus 184 l~~~l~~~-~~~~~lIf~~~~~----~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~~~G~ 257 (351)
+...+... .+.++..-.||.- +...+.++|...++.+.++.|.+....|.++++...+|+.+++|+|-+ +-..+
T Consensus 301 ~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V 380 (677)
T COG1200 301 LLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKV 380 (677)
T ss_pred HHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcce
Confidence 33344333 4678999999964 555667777777999999999999999999999999999999999965 55588
Q ss_pred CCCCCCEEEEe
Q psy13286 258 DVQAVNVVINF 268 (351)
Q Consensus 258 di~~~~~Vi~~ 268 (351)
++.++..||.-
T Consensus 381 ~F~~LgLVIiD 391 (677)
T COG1200 381 EFHNLGLVIID 391 (677)
T ss_pred eecceeEEEEe
Confidence 88888777653
No 199
>KOG1513|consensus
Probab=94.88 E-value=0.022 Score=54.61 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=46.8
Q ss_pred HHHHhhcCCccEEEEeCcCCCCCCCCCCCE--------EEEecCCCChhhHhhhccccccCCC
Q psy13286 235 VFHDFRSGLCRNLVCSDLFTRGIDVQAVNV--------VINFDFPKMAETYLHRIGRSGRYGH 289 (351)
Q Consensus 235 ~~~~f~~g~~~ilv~T~~~~~G~di~~~~~--------Vi~~~~p~s~~~~~q~~GR~gR~~~ 289 (351)
--+.|-+|+..|-|-+.+.+.|+.++.-+. =|-+.+|||.+.-+|++||.+|.++
T Consensus 849 EKqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 849 EKQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred HHhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 356788999999999999999999875433 4568899999999999999999876
No 200
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.27 E-value=0.21 Score=51.79 Aligned_cols=78 Identities=8% Similarity=0.094 Sum_probs=64.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-cCCCCCCCCCCCEEE
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD-LFTRGIDVQAVNVVI 266 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~G~di~~~~~Vi 266 (351)
.+.+++|.+|++.-|...++.++.. ++.+..+++..+..++..+++.+.+|..+|+|+|. .+...+.+.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4678999999999999988888753 46778899999999999999999999999999996 444456677787777
Q ss_pred Eec
Q psy13286 267 NFD 269 (351)
Q Consensus 267 ~~~ 269 (351)
.-.
T Consensus 728 IDE 730 (1147)
T PRK10689 728 VDE 730 (1147)
T ss_pred Eec
Confidence 543
No 201
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.01 E-value=0.046 Score=44.58 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=48.1
Q ss_pred cccccCCc---chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEE
Q psy13286 2 VQARQEPT---QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78 (351)
Q Consensus 2 ~~a~tgs~---~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Il 78 (351)
|+.+.|+| ++..+....... +.++++++||...+.+..+.. ++.
T Consensus 23 l~G~aGtGKT~~l~~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~~-------~~~------------------------ 69 (196)
T PF13604_consen 23 LQGPAGTGKTTLLKALAEALEAA--GKRVIGLAPTNKAAKELREKT-------GIE------------------------ 69 (196)
T ss_dssp EEESTTSTHHHHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHH-------TS-------------------------
T ss_pred EEECCCCCHHHHHHHHHHHHHhC--CCeEEEECCcHHHHHHHHHhh-------Ccc------------------------
Confidence 45666665 222222222222 379999999998886655442 211
Q ss_pred EEccHHHHHHHhccCc----CCCCccEEEEcccccccCcchHHHHHHHHHhCCC-CCcEEEEEe
Q psy13286 79 IATPGRILDLMDKQVA----NMDHCKILVLDEADKLLSQDFKGMLDHVISILPH-ERQILLYSA 137 (351)
Q Consensus 79 v~Tp~~l~~~l~~~~~----~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~-~~~~i~~Sa 137 (351)
..|-.+++........ .....+++||||+.++.... +..++...+. ..+++++.-
T Consensus 70 a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~----~~~ll~~~~~~~~klilvGD 129 (196)
T PF13604_consen 70 AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQ----LARLLRLAKKSGAKLILVGD 129 (196)
T ss_dssp EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHH----HHHHHHHS-T-T-EEEEEE-
T ss_pred hhhHHHHHhcCCcccccccccCCcccEEEEecccccCHHH----HHHHHHHHHhcCCEEEEECC
Confidence 2232222221111111 14566899999999765444 4455555544 445555543
No 202
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=93.95 E-value=0.34 Score=49.15 Aligned_cols=79 Identities=8% Similarity=0.177 Sum_probs=66.2
Q ss_pred hhCCCCcEEEEeCchHHH----HHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEe-CcCCCCCCCCCCC
Q psy13286 189 SKLQINQSIIFCNSTQRV----ELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS-DLFTRGIDVQAVN 263 (351)
Q Consensus 189 ~~~~~~~~lIf~~~~~~~----~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T-~~~~~G~di~~~~ 263 (351)
.-..+.++.|.+||.=-| +.+.+.++..++.+..++.-.+.+++..+++..++|+++|+|+| ..+..++-+.++.
T Consensus 639 AV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLG 718 (1139)
T COG1197 639 AVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLG 718 (1139)
T ss_pred HhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCC
Confidence 344677899999996555 45666666668889999999999999999999999999999999 6888899999988
Q ss_pred EEEE
Q psy13286 264 VVIN 267 (351)
Q Consensus 264 ~Vi~ 267 (351)
.+|.
T Consensus 719 LlII 722 (1139)
T COG1197 719 LLII 722 (1139)
T ss_pred eEEE
Confidence 8774
No 203
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.87 E-value=0.4 Score=46.82 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=71.7
Q ss_pred EcCcccHHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhc-CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEe
Q psy13286 174 FVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITEL-GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS 250 (351)
Q Consensus 174 ~~~~~~k~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T 250 (351)
.+.-+.|.+...+++... .++.+||.++..+..-.+...|+.+ +.++..+|+++++.+|........+|+.+|+|+|
T Consensus 224 GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt 303 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT 303 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe
Confidence 334456777666666532 4568999999999888888888765 8899999999999999999999999999999999
Q ss_pred CcCCCCCCCCCCCEEEE
Q psy13286 251 DLFTRGIDVQAVNVVIN 267 (351)
Q Consensus 251 ~~~~~G~di~~~~~Vi~ 267 (351)
...-- .-++++..||.
T Consensus 304 RSAlF-~Pf~~LGLIIv 319 (730)
T COG1198 304 RSALF-LPFKNLGLIIV 319 (730)
T ss_pred chhhc-CchhhccEEEE
Confidence 74322 24456665553
No 204
>KOG1802|consensus
Probab=93.75 E-value=0.1 Score=49.26 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=38.6
Q ss_pred CcccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEEC
Q psy13286 1 MVQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTG 60 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~ 60 (351)
|+|.|.|+| .-.++.++... .++.+|+++|+..-+.|+++.+++- |++|+-+..
T Consensus 429 LIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~t----gLKVvRl~a 486 (935)
T KOG1802|consen 429 LIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKT----GLKVVRLCA 486 (935)
T ss_pred eeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhc----CceEeeeeh
Confidence 578888886 33444444443 4479999999999999999888665 566665553
No 205
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=93.61 E-value=0.45 Score=45.07 Aligned_cols=70 Identities=16% Similarity=0.329 Sum_probs=54.8
Q ss_pred EEEEeCchHHHHHHHHHHHhc-----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-----cCCCC-CCCCCCCE
Q psy13286 196 SIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD-----LFTRG-IDVQAVNV 264 (351)
Q Consensus 196 ~lIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~G-~di~~~~~ 264 (351)
+||.++|++-|..+++.+... ++.+..++|+++...+. +.++.| .+|+|+|+ .+.++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999998888764 46678999999887665 444456 99999998 35555 88888888
Q ss_pred EEEec
Q psy13286 265 VINFD 269 (351)
Q Consensus 265 Vi~~~ 269 (351)
+|.-.
T Consensus 178 lVlDE 182 (513)
T COG0513 178 LVLDE 182 (513)
T ss_pred EEecc
Confidence 77533
No 206
>KOG0339|consensus
Probab=93.45 E-value=0.89 Score=41.87 Aligned_cols=70 Identities=7% Similarity=0.119 Sum_probs=50.2
Q ss_pred Cc-EEEEeCchHHHHHHHHHHHh----cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC--c----CCCCCCCCCC
Q psy13286 194 NQ-SIIFCNSTQRVELLAKKITE----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD--L----FTRGIDVQAV 262 (351)
Q Consensus 194 ~~-~lIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~--~----~~~G~di~~~ 262 (351)
++ .+|.|++++.|..+....++ .++.+..+||+.+..++..-++ ....++|||+ . --.++|+.++
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceee
Confidence 44 57888999988766555444 4788999999999988776655 3467899997 2 2237788777
Q ss_pred CEEEE
Q psy13286 263 NVVIN 267 (351)
Q Consensus 263 ~~Vi~ 267 (351)
+.++.
T Consensus 372 S~LV~ 376 (731)
T KOG0339|consen 372 SYLVL 376 (731)
T ss_pred eEEEE
Confidence 76553
No 207
>KOG1133|consensus
Probab=93.36 E-value=2.7 Score=40.42 Aligned_cols=112 Identities=17% Similarity=0.196 Sum_probs=73.2
Q ss_pred HHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCe-------EEEeccCCCHHHHHHHHHHhh----cCCccEEEEe--C
Q psy13286 185 NTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC-------CYYIHARMAQAHRNRVFHDFR----SGLCRNLVCS--D 251 (351)
Q Consensus 185 ~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~-------~~~~~~~~~~~~r~~~~~~f~----~g~~~ilv~T--~ 251 (351)
..+....+ +.+++|++|.+-...+.+.....|+- ..++-...+ -+.+++.|. .|.-.+|.+. .
T Consensus 622 ~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGG 697 (821)
T KOG1133|consen 622 SNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGG 697 (821)
T ss_pred HHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 33444455 77999999999888887777654432 122222222 344555554 3554566554 6
Q ss_pred cCCCCCCCCC--CCEEEEecCCCC------------------------hhh--------HhhhccccccCCCceeEEEEe
Q psy13286 252 LFTRGIDVQA--VNVVINFDFPKM------------------------AET--------YLHRIGRSGRYGHLGIAINLI 297 (351)
Q Consensus 252 ~~~~G~di~~--~~~Vi~~~~p~s------------------------~~~--------~~q~~GR~gR~~~~~~~i~~~ 297 (351)
.+++|+|+.+ +++|+..++|.. .+- --|-+|||-|..++-.+|.++
T Consensus 698 KlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~Ll 777 (821)
T KOG1133|consen 698 KLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLL 777 (821)
T ss_pred ccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEe
Confidence 8999999986 678999888732 011 238889999998887788877
Q ss_pred ccc
Q psy13286 298 TYE 300 (351)
Q Consensus 298 ~~~ 300 (351)
+..
T Consensus 778 D~R 780 (821)
T KOG1133|consen 778 DKR 780 (821)
T ss_pred hhh
Confidence 653
No 208
>KOG1803|consensus
Probab=93.20 E-value=0.063 Score=50.05 Aligned_cols=44 Identities=7% Similarity=0.061 Sum_probs=29.1
Q ss_pred CcccccCCc-chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHH
Q psy13286 1 MVQARQEPT-QFLYLNKLTPAKITSKATLIIVPTRELALQTSQIC 44 (351)
Q Consensus 1 ~~~a~tgs~-~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~ 44 (351)
++|.|.|+| .-.+...+.+....+.++|+++||.+-+.-+.+.+
T Consensus 205 ~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 205 IIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred EeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHh
Confidence 367788886 22222222333344579999999999998888754
No 209
>PRK14701 reverse gyrase; Provisional
Probab=93.15 E-value=0.48 Score=50.88 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=53.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL 252 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 252 (351)
++.+++|.+|+++-+..+++.|+.. +..+..+||+++..++.+.++.+.+|..+|||+|+.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999999998873 456788999999999999999999999999999974
No 210
>KOG0338|consensus
Probab=93.09 E-value=0.76 Score=42.31 Aligned_cols=80 Identities=6% Similarity=0.086 Sum_probs=59.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-------CCCCCCCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-------FTRGIDVQA 261 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-------~~~G~di~~ 261 (351)
-.++||.|++++-+-.++...+.. .+.++..-||++-..++.+++ ...+|+|||+- -+.++|+.+
T Consensus 252 ~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATPGRlIDHlrNs~sf~lds 327 (691)
T KOG0338|consen 252 ATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SRPDIVIATPGRLIDHLRNSPSFNLDS 327 (691)
T ss_pred ceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hCCCEEEecchhHHHHhccCCCccccc
Confidence 458999999999888777666554 678888999999988887776 56899999982 455777777
Q ss_pred CCEEEEecCCCChhh
Q psy13286 262 VNVVINFDFPKMAET 276 (351)
Q Consensus 262 ~~~Vi~~~~p~s~~~ 276 (351)
+.++|.-...+-.++
T Consensus 328 iEVLvlDEADRMLee 342 (691)
T KOG0338|consen 328 IEVLVLDEADRMLEE 342 (691)
T ss_pred eeEEEechHHHHHHH
Confidence 776665555444333
No 211
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=92.98 E-value=0.63 Score=39.14 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=63.9
Q ss_pred HHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCC----ccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccc
Q psy13286 208 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGL----CRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGR 283 (351)
Q Consensus 208 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~----~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR 283 (351)
.+...+.. ++.+..++++.+.+. -+|.++. ..|+|+=+.+++|+.++++.+-+....+...+++.||.--
T Consensus 102 ~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRw 175 (239)
T PF10593_consen 102 ELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRW 175 (239)
T ss_pred HHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhc
Confidence 44444444 677888887655432 3444443 7888999999999999999998888889999999998754
Q ss_pred cc-cCCCceeEEEEeccch
Q psy13286 284 SG-RYGHLGIAINLITYED 301 (351)
Q Consensus 284 ~g-R~~~~~~~i~~~~~~~ 301 (351)
.| |.|-...|=++.+..-
T Consensus 176 FGYR~gY~dl~Ri~~~~~l 194 (239)
T PF10593_consen 176 FGYRPGYEDLCRIYMPEEL 194 (239)
T ss_pred ccCCcccccceEEecCHHH
Confidence 55 6666677777777653
No 212
>PF13245 AAA_19: Part of AAA domain
Probab=92.74 E-value=0.13 Score=34.70 Aligned_cols=42 Identities=24% Similarity=0.215 Sum_probs=29.8
Q ss_pred cccccCCc----chhhhcccCc--CCCCCceEEEEcCCHHHHHHHHHHH
Q psy13286 2 VQARQEPT----QFLYLNKLTP--AKITSKATLIIVPTRELALQTSQIC 44 (351)
Q Consensus 2 ~~a~tgs~----~l~~l~~l~~--~~~~~~~~lil~P~~~L~~q~~~~~ 44 (351)
|++|.||| ++..+..+.. ... +.++++++|++..+.++.+.+
T Consensus 15 v~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 15 VQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 58888997 3334444432 223 579999999999998888776
No 213
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.70 E-value=0.075 Score=42.40 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=27.1
Q ss_pred hCCCcEEEEccHHHHHHHhccCcC--CCCccEEEEcccccccC
Q psy13286 72 YQKVHLIIATPGRILDLMDKQVAN--MDHCKILVLDEADKLLS 112 (351)
Q Consensus 72 ~~~~~Ilv~Tp~~l~~~l~~~~~~--~~~~~lvViDE~h~~~~ 112 (351)
...++|+|++..-|++-....... ...-.+|||||||.+.+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 346899999999986643332221 23446899999998765
No 214
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.70 E-value=4.6 Score=32.78 Aligned_cols=75 Identities=12% Similarity=0.065 Sum_probs=52.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-----C-CCCCCCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-----F-TRGIDVQA 261 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~-~~G~di~~ 261 (351)
.+.+++|.+++++.+...+..++.. +..+..++|+.+........+ +..+|+|+|.. + ..-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4568999999999988877776554 677888899887755443332 56789999952 2 22356677
Q ss_pred CCEEEEecC
Q psy13286 262 VNVVINFDF 270 (351)
Q Consensus 262 ~~~Vi~~~~ 270 (351)
++++|.-..
T Consensus 144 l~~lIvDE~ 152 (203)
T cd00268 144 VKYLVLDEA 152 (203)
T ss_pred CCEEEEeCh
Confidence 777775443
No 215
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=92.42 E-value=0.22 Score=39.62 Aligned_cols=120 Identities=17% Similarity=0.148 Sum_probs=46.6
Q ss_pred cccccCCcchhhhccc---CcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEE
Q psy13286 2 VQARQEPTQFLYLNKL---TPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78 (351)
Q Consensus 2 ~~a~tgs~~l~~l~~l---~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Il 78 (351)
|.|+-|.|--.++-.. ...... .+++|.+|+.+=++..++.+.+-++..+.+....... ............|-
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~~~-~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~i~ 77 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQKGK-IRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLRFNKQRIE 77 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS------EEEE-SS--S-HHHHHCC-----------------------------CCC--
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhcC-ceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccccccccceEE
Confidence 5667777633333222 222222 5899999999998888877655554444333000000 00000011245666
Q ss_pred EEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCc
Q psy13286 79 IATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFP 140 (351)
Q Consensus 79 v~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 140 (351)
...|+.+... ....|++|||||=.+. -+.+..++... ..+++|.|..
T Consensus 78 f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~~----~~vv~stTi~ 124 (177)
T PF05127_consen 78 FVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRRF----PRVVFSTTIH 124 (177)
T ss_dssp B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEBS
T ss_pred EECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhhC----CEEEEEeecc
Confidence 7777766432 2345899999998642 23344553333 2567777764
No 216
>KOG1132|consensus
Probab=92.41 E-value=0.55 Score=45.99 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=46.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcC-------CeEEEeccCCCHHHHHHHHHHhhc--------CCccEEEEeCcCCCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELG-------YCCYYIHARMAQAHRNRVFHDFRS--------GLCRNLVCSDLFTRGI 257 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~--------g~~~ilv~T~~~~~G~ 257 (351)
+...|+|.++....+++....+..+ ..- .+..--+..+=.+++..|.+ |..-+.||-...++|+
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 3459999999987777755554321 111 11111122222344444432 3445668888999999
Q ss_pred CCCC--CCEEEEecCC
Q psy13286 258 DVQA--VNVVINFDFP 271 (351)
Q Consensus 258 di~~--~~~Vi~~~~p 271 (351)
|+.+ .+.||..++|
T Consensus 640 DFsD~~~RaVI~tGlP 655 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLP 655 (945)
T ss_pred CccccCCceeEEecCC
Confidence 9974 5678988876
No 217
>KOG0330|consensus
Probab=92.09 E-value=1 Score=39.98 Aligned_cols=83 Identities=12% Similarity=0.163 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc---
Q psy13286 180 KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL--- 252 (351)
Q Consensus 180 k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~--- 252 (351)
.+..+..++.+.+...++|.+++++-|..+++.+... |..++.+-|+++...+. .+.+ .+..|||||+-
T Consensus 116 aLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~--~~L~--kkPhilVaTPGrL~ 191 (476)
T KOG0330|consen 116 ALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQA--NQLS--KKPHILVATPGRLW 191 (476)
T ss_pred HHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHH--HHhh--cCCCEEEeCcHHHH
Confidence 3567777887777778999999999999999999876 67889999999764322 2222 46788999972
Q ss_pred ----CCCCCCCCCCCEEE
Q psy13286 253 ----FTRGIDVQAVNVVI 266 (351)
Q Consensus 253 ----~~~G~di~~~~~Vi 266 (351)
-..|+++..+.+.|
T Consensus 192 dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLV 209 (476)
T ss_pred HHHHhccCccHHHhHHHh
Confidence 25677776555433
No 218
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=91.87 E-value=0.29 Score=45.97 Aligned_cols=108 Identities=10% Similarity=0.094 Sum_probs=59.5
Q ss_pred CCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhc--cCcCCC
Q psy13286 20 AKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDK--QVANMD 97 (351)
Q Consensus 20 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~ 97 (351)
....+..+++.++++.-+...++.++++....+...... . ..... .....|...........+.+ ...+-.
T Consensus 50 ~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~-~-----~~~~~-~~~~~i~~~~~~s~~~~~s~~~~~~dG~ 122 (477)
T PF03354_consen 50 DGEPGAEIYCAANTRDQAKIVFDEAKKMIEASPELRKRK-K-----PKIIK-SNKKEIEFPKTGSFFKALSSDADSLDGL 122 (477)
T ss_pred CCccCceEEEEeCCHHHHHHHHHHHHHHHHhChhhccch-h-----hhhhh-hhceEEEEcCCCcEEEEEecCCCCccCC
Confidence 344457899999999999999999999987632111000 0 00000 01122332222333222222 222345
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEE
Q psy13286 98 HCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLY 135 (351)
Q Consensus 98 ~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 135 (351)
+.+++|+||+|...+......+..-....+ +++++..
T Consensus 123 ~~~~~i~DE~h~~~~~~~~~~l~~g~~~r~-~pl~~~I 159 (477)
T PF03354_consen 123 NPSLAIFDELHAHKDDELYDALESGMGARP-NPLIIII 159 (477)
T ss_pred CCceEEEeCCCCCCCHHHHHHHHhhhccCC-CceEEEE
Confidence 678999999998776555555555555543 3444433
No 219
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=91.85 E-value=2 Score=39.60 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=92.5
Q ss_pred HhhCCCCcEEEEeCchHHHHHHHHHHHhc-C---CeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC------cCCCCC
Q psy13286 188 FSKLQINQSIIFCNSTQRVELLAKKITEL-G---YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD------LFTRGI 257 (351)
Q Consensus 188 l~~~~~~~~lIf~~~~~~~~~l~~~L~~~-~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~------~~~~G~ 257 (351)
+...++ ++|+..||+--+..=++.+.+. + -.+..++|..++++|...+. +.+|+|+|+ ..+.-+
T Consensus 54 l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Gri 127 (542)
T COG1111 54 LRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRI 127 (542)
T ss_pred HHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCcc
Confidence 344444 8999999987666555555443 3 45789999999999887654 458999997 355568
Q ss_pred CCCCCCEEEEecCCCCh--hhHhhhccccccCCCc--eeEEEEeccchHHHHHHHHHHhccccCCCCcccccc
Q psy13286 258 DVQAVNVVINFDFPKMA--ETYLHRIGRSGRYGHL--GIAINLITYEDRYALHRIEKELGTEIKSIPKVIDPA 326 (351)
Q Consensus 258 di~~~~~Vi~~~~p~s~--~~~~q~~GR~gR~~~~--~~~i~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 326 (351)
|+.++.|+|+-..-+.. -.|..-+-...|...+ -.+.+.....+...+.++.+.|+++..++-..-+..
T Consensus 128 d~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~D 200 (542)
T COG1111 128 DLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPD 200 (542)
T ss_pred ChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCcc
Confidence 88889888876665443 2455555555666555 344455667799999999999999887665544443
No 220
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.57 E-value=0.76 Score=43.13 Aligned_cols=77 Identities=8% Similarity=0.164 Sum_probs=62.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-CCCCC-------CCCCCCE
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-FTRGI-------DVQAVNV 264 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~~~G~-------di~~~~~ 264 (351)
++.+||.+|+++-+......|+..++.+..++++.+..++..++.....|+.+++++|+- +.... ...++..
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 467999999999999999999999999999999999999999999999999999999963 22211 3455666
Q ss_pred EEEec
Q psy13286 265 VINFD 269 (351)
Q Consensus 265 Vi~~~ 269 (351)
||.-.
T Consensus 131 iViDE 135 (470)
T TIGR00614 131 IAVDE 135 (470)
T ss_pred EEEeC
Confidence 66544
No 221
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=91.54 E-value=2.2 Score=39.94 Aligned_cols=74 Identities=14% Similarity=0.209 Sum_probs=54.6
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc-----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-----cC-CCCCCCCCC
Q psy13286 194 NQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD-----LF-TRGIDVQAV 262 (351)
Q Consensus 194 ~~~lIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~-~~G~di~~~ 262 (351)
.+++|.|++++-|..+++.++.. +..+..++|+.+...+...++ +..+|+|+|+ .+ ...+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 46899999999999988888754 577888999998765543333 5679999995 22 235678888
Q ss_pred CEEEEecCC
Q psy13286 263 NVVINFDFP 271 (351)
Q Consensus 263 ~~Vi~~~~p 271 (351)
+.+|.-...
T Consensus 149 ~~lViDEad 157 (460)
T PRK11776 149 NTLVLDEAD 157 (460)
T ss_pred CEEEEECHH
Confidence 888765543
No 222
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=90.84 E-value=2.9 Score=40.76 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=52.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc-----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-----cCC-CCCCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD-----LFT-RGIDVQ 260 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~-~G~di~ 260 (351)
...++||.|++++-|..+++.+... ++.+..++|+.+...+... ++ ...+|+|+|+ .+. ..+++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~---l~-~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA---LR-QGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcchh
Confidence 3457999999999999988887654 6788889998876544333 22 4578999996 222 346777
Q ss_pred CCCEEEEec
Q psy13286 261 AVNVVINFD 269 (351)
Q Consensus 261 ~~~~Vi~~~ 269 (351)
++.+||.-.
T Consensus 149 ~l~~lVlDE 157 (629)
T PRK11634 149 KLSGLVLDE 157 (629)
T ss_pred hceEEEecc
Confidence 888777543
No 223
>PRK14974 cell division protein FtsY; Provisional
Probab=90.83 E-value=1.3 Score=39.31 Aligned_cols=54 Identities=9% Similarity=0.164 Sum_probs=37.8
Q ss_pred CCccEEEEcccccccC-cchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHh
Q psy13286 97 DHCKILVLDEADKLLS-QDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKH 150 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~ 150 (351)
...++|+||.+.++.. ...-..+..+.....+...++.++|+...+....+..+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 4568999999998764 34556677776666666668888998766555545444
No 224
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=90.62 E-value=0.89 Score=43.68 Aligned_cols=104 Identities=11% Similarity=0.101 Sum_probs=61.5
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCC--ceEEEEECCcchHHHHHHHhCC--CcEEEEccHHHHHHHhccCcCCCCc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLN--VKVMVTTGGTNLRDDIMRIYQK--VHLIIATPGRILDLMDKQVANMDHC 99 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~--~~Ilv~Tp~~l~~~l~~~~~~~~~~ 99 (351)
+.++++.+|.+..++..++.++..++... ..+....| ... .-...++ +.|..+|. ...+...-..+
T Consensus 284 Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i~f~nG~kstI~FaSa------rntNsiRGqtf 353 (738)
T PHA03368 284 GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDF 353 (738)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EEEecCCCccEEEEEec------cCCCCccCCcc
Confidence 47999999999999999999988876431 11212222 111 0001112 23444321 11223345689
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCc
Q psy13286 100 KILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFP 140 (351)
Q Consensus 100 ~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 140 (351)
+++|+|||+.+....+...+ -++. ..+++++.+|.|-+
T Consensus 354 DLLIVDEAqFIk~~al~~il-p~l~--~~n~k~I~ISS~Ns 391 (738)
T PHA03368 354 NLLFVDEANFIRPDAVQTIM-GFLN--QTNCKIIFVSSTNT 391 (738)
T ss_pred cEEEEechhhCCHHHHHHHH-HHHh--ccCccEEEEecCCC
Confidence 99999999977666555444 2222 23788999998843
No 225
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=90.48 E-value=2.4 Score=41.11 Aligned_cols=70 Identities=11% Similarity=0.014 Sum_probs=51.9
Q ss_pred HHHHhhCCCCcEEEEeCchHHHHHHHHHHHh----cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCC
Q psy13286 185 NTLFSKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQ 260 (351)
Q Consensus 185 ~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~ 260 (351)
..+.....+.+++|.++++.-|...++.+.. .|+.+..+.|+++..+|.... ..+|+++|.. +.|+|.=
T Consensus 136 p~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~~-e~~FDyL 208 (656)
T PRK12898 136 PAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTNK-ELVFDYL 208 (656)
T ss_pred HHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECCC-chhhhhc
Confidence 3344455577899999999999887777765 488999999999877655432 4589988875 6677764
Q ss_pred C
Q psy13286 261 A 261 (351)
Q Consensus 261 ~ 261 (351)
.
T Consensus 209 r 209 (656)
T PRK12898 209 R 209 (656)
T ss_pred c
Confidence 3
No 226
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=90.39 E-value=0.52 Score=45.90 Aligned_cols=43 Identities=7% Similarity=0.034 Sum_probs=29.3
Q ss_pred CcccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy13286 1 MVQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIE 46 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 46 (351)
+|+.|+|+| +..++..+. ..+.++|+++||..-+.++.+.+.+
T Consensus 177 lI~GpPGTGKT~t~~~ii~~~~---~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 177 LIHGPPGTGKTRTLVELIRQLV---KRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred EEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 467788886 222222222 2346999999999999888887754
No 227
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=90.35 E-value=0.72 Score=34.49 Aligned_cols=37 Identities=32% Similarity=0.448 Sum_probs=23.0
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeC
Q psy13286 100 KILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATF 139 (351)
Q Consensus 100 ~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 139 (351)
.+||+||+|++.. ...+..+........-.+++++++
T Consensus 89 ~~lviDe~~~l~~---~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLFS---DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHHT---HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcCC---HHHHHHHHHHHhCCCCeEEEEECh
Confidence 6999999999642 344555555544444455566654
No 228
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=90.08 E-value=1.9 Score=41.49 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=52.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHh------ccCcCCCC
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMD------KQVANMDH 98 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~------~~~~~~~~ 98 (351)
.++++.+||---+..+.+.+.......... .. ......+-..|..+++.... ........
T Consensus 194 ~~I~l~APTGkAA~rL~e~~~~~~~~l~~~----------~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~ 259 (586)
T TIGR01447 194 LRIALAAPTGKAAARLAESLRKAVKNLAAA----------EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLP 259 (586)
T ss_pred CcEEEECCcHHHHHHHHHHHHhhhcccccc----------hh----hhhccccccchhhhhhcccCCcchhhhcccCCCc
Confidence 589999999888877776654433211110 00 00011122344444432211 11122346
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEee
Q psy13286 99 CKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSAT 138 (351)
Q Consensus 99 ~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 138 (351)
+++|||||+-++... .+..++..++...++|++.-.
T Consensus 260 ~dvlIiDEaSMvd~~----l~~~ll~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 260 LDVLVVDEASMVDLP----LMAKLLKALPPNTKLILLGDK 295 (586)
T ss_pred ccEEEEcccccCCHH----HHHHHHHhcCCCCEEEEECCh
Confidence 899999999965433 455667777777777766433
No 229
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=89.61 E-value=1.1 Score=46.81 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=57.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CCe---EEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCC-CCC-CC-C
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL----GYC---CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTR-GID-VQ-A 261 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~----~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~-G~d-i~-~ 261 (351)
.+.+++|.+|+++-|..+++.++.. ++. +..+||+++..++....+.+.+|..+|+|+|+..-. .++ +. .
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~ 199 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPK 199 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCC
Confidence 3578999999999999998888765 333 235899999999999899999999999999973111 111 12 5
Q ss_pred CCEEEEec
Q psy13286 262 VNVVINFD 269 (351)
Q Consensus 262 ~~~Vi~~~ 269 (351)
++++|.-+
T Consensus 200 ~~~iVvDE 207 (1171)
T TIGR01054 200 FDFIFVDD 207 (1171)
T ss_pred CCEEEEeC
Confidence 66666544
No 230
>KOG0331|consensus
Probab=89.24 E-value=1.7 Score=40.57 Aligned_cols=82 Identities=9% Similarity=0.080 Sum_probs=55.9
Q ss_pred chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHh---C-CCcEEEEccHHH
Q psy13286 10 QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIY---Q-KVHLIIATPGRI 85 (351)
Q Consensus 10 ~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~-~~~Ilv~Tp~~l 85 (351)
+.++|..+. ....+++||.|-|+.-|.++...+++. ++++..+||+.+..+....+. + .+.|+|||--.-
T Consensus 329 l~~lL~~~~--~~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAa 402 (519)
T KOG0331|consen 329 LGKLLEDIS--SDSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAA 402 (519)
T ss_pred HHHHHHHHh--ccCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEccccc
Confidence 344444444 334479999999999998888777554 578999999988655543332 2 588999995322
Q ss_pred HHHHhccCcCCCCccEEE
Q psy13286 86 LDLMDKQVANMDHCKILV 103 (351)
Q Consensus 86 ~~~l~~~~~~~~~~~lvV 103 (351)
..+++..+++||
T Consensus 403 ------RGLDi~dV~lVI 414 (519)
T KOG0331|consen 403 ------RGLDVPDVDLVI 414 (519)
T ss_pred ------ccCCCccccEEE
Confidence 244667777666
No 231
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=89.18 E-value=1.3 Score=42.77 Aligned_cols=96 Identities=20% Similarity=0.254 Sum_probs=52.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHH------hccCcCCCC
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLM------DKQVANMDH 98 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l------~~~~~~~~~ 98 (351)
.++++++||.--+..+.+.+.......+.. ... ......-..|-.+++... ..+..+...
T Consensus 200 ~~i~l~APTgkAA~rL~e~~~~~~~~~~~~-----------~~~---~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~ 265 (615)
T PRK10875 200 CRIRLAAPTGKAAARLTESLGKALRQLPLT-----------DEQ---KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLH 265 (615)
T ss_pred cEEEEECCcHHHHHHHHHHHHhhhhccccc-----------hhh---hhcCCCchHHHHHHhCcCCCccchhhccccCCC
Confidence 578899999998877777664433222110 000 000111133433332211 111123446
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEee
Q psy13286 99 CKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSAT 138 (351)
Q Consensus 99 ~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 138 (351)
++++||||+-++.- ..+..++..++...+++++.-.
T Consensus 266 ~dvlIvDEaSMvd~----~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 266 LDVLVVDEASMVDL----PMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred CCeEEEChHhcccH----HHHHHHHHhcccCCEEEEecch
Confidence 79999999996532 3455677778888888877544
No 232
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=88.34 E-value=2.1 Score=41.57 Aligned_cols=59 Identities=7% Similarity=0.165 Sum_probs=54.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
++.++|.+|.++-+..-.+.|+..|+.+..++++.+..++..+.+....|..+++++|+
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 46789999999999988899999999999999999999999999999999999999886
No 233
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=88.05 E-value=0.3 Score=43.02 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=24.4
Q ss_pred ccccCCcchhhhcccCcC---CCCCceEEEEcCCHHHH
Q psy13286 3 QARQEPTQFLYLNKLTPA---KITSKATLIIVPTRELA 37 (351)
Q Consensus 3 ~a~tgs~~l~~l~~l~~~---~~~~~~~lil~P~~~L~ 37 (351)
+|.||+++|++.+.+++- ..+ .++++-=|+..+-
T Consensus 253 ~AGtGKTlLALaAgleqv~e~~~y-~KiiVtRp~vpvG 289 (436)
T COG1875 253 KAGTGKTLLALAAGLEQVLERKRY-RKIIVTRPTVPVG 289 (436)
T ss_pred cCCccHhHHHHHHHHHHHHHHhhh-ceEEEecCCcCcc
Confidence 588999999988888653 233 6777777776654
No 234
>KOG0347|consensus
Probab=87.86 E-value=2.4 Score=39.56 Aligned_cols=72 Identities=7% Similarity=0.098 Sum_probs=56.4
Q ss_pred cEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-----CCCC----CCCCC
Q psy13286 195 QSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-----FTRG----IDVQA 261 (351)
Q Consensus 195 ~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~~G----~di~~ 261 (351)
-.||++++++-|-.+.+-|... ++.+..+.||+....++++++. ..+|+|||+- +.++ -++..
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 4899999999999999888664 7899999999999888888775 7799999972 2222 24567
Q ss_pred CCEEEEecC
Q psy13286 262 VNVVINFDF 270 (351)
Q Consensus 262 ~~~Vi~~~~ 270 (351)
++|+|.-..
T Consensus 341 vkcLVlDEa 349 (731)
T KOG0347|consen 341 VKCLVLDEA 349 (731)
T ss_pred ceEEEEccH
Confidence 777775544
No 235
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=87.68 E-value=3 Score=38.67 Aligned_cols=74 Identities=19% Similarity=0.119 Sum_probs=54.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc------CCCCCCCCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL------FTRGIDVQAV 262 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~------~~~G~di~~~ 262 (351)
+.++||.+++++-+..+++.+... +..+..++|+.+...+...+ .+..+|+|+|+. ....++..++
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAV 148 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccC
Confidence 357999999999998887776553 67889999998876655443 256789999961 2345677788
Q ss_pred CEEEEecC
Q psy13286 263 NVVINFDF 270 (351)
Q Consensus 263 ~~Vi~~~~ 270 (351)
++||.-..
T Consensus 149 ~~lViDEa 156 (434)
T PRK11192 149 ETLILDEA 156 (434)
T ss_pred CEEEEECH
Confidence 88776543
No 236
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=87.58 E-value=8 Score=37.94 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=55.7
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHH-hCCCcEEEEccHHHHHHHhccCcCC
Q psy13286 21 KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRI-YQKVHLIIATPGRILDLMDKQVANM 96 (351)
Q Consensus 21 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~ 96 (351)
...+.+++|+++|+..+.++.+.+.+. ++++..++++.+..+. +..+ ....+|+|+| ..+. ..+++
T Consensus 439 ~~~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDi 508 (655)
T TIGR00631 439 VARNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDL 508 (655)
T ss_pred HcCCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeee
Confidence 344579999999999998887777554 7888888887654322 2222 2357889888 2233 34567
Q ss_pred CCccEEEEcccccc
Q psy13286 97 DHCKILVLDEADKL 110 (351)
Q Consensus 97 ~~~~lvViDE~h~~ 110 (351)
..++++|+-|++..
T Consensus 509 P~v~lVvi~Dadif 522 (655)
T TIGR00631 509 PEVSLVAILDADKE 522 (655)
T ss_pred CCCcEEEEeCcccc
Confidence 89999998888754
No 237
>PRK05642 DNA replication initiation factor; Validated
Probab=87.28 E-value=4.3 Score=34.10 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=40.6
Q ss_pred CCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCc-chHHHHHHHHHhCCCCCcEEEEEeeCc
Q psy13286 73 QKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQ-DFKGMLDHVISILPHERQILLYSATFP 140 (351)
Q Consensus 73 ~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~ 140 (351)
.+..+++.+.+.+......-...+...+++|+|++|.+... .+...+..+...+......+++|++.+
T Consensus 72 ~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 72 RGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred CCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 35678888877775432211113556789999999977543 344556666655444334556666644
No 238
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=86.96 E-value=2 Score=37.61 Aligned_cols=93 Identities=16% Similarity=0.288 Sum_probs=64.9
Q ss_pred hhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH-HHHHhC-CCcEEEEccHHHHHHHh
Q psy13286 13 YLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD-IMRIYQ-KVHLIIATPGRILDLMD 90 (351)
Q Consensus 13 ~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~-~~~Ilv~Tp~~l~~~l~ 90 (351)
+...|..+.+.+..+++.+|+.+..+|.+..+++... ..++...++....+.+ ..+..+ ..+|+|+|. +|+
T Consensus 294 l~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~--~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT-----ILE 366 (441)
T COG4098 294 LKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLP--KETIASVHSEDQHRKEKVEAFRDGKITLLITTT-----ILE 366 (441)
T ss_pred HHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCC--ccceeeeeccCccHHHHHHHHHcCceEEEEEee-----hhh
Confidence 4445555667678899999999999999998865543 3455666666654443 444444 478899985 344
Q ss_pred ccCcCCCCccEEEEcccccccCc
Q psy13286 91 KQVANMDHCKILVLDEADKLLSQ 113 (351)
Q Consensus 91 ~~~~~~~~~~lvViDE~h~~~~~ 113 (351)
++- .+.+++.+|++--|++..+
T Consensus 367 RGV-Tfp~vdV~Vlgaeh~vfTe 388 (441)
T COG4098 367 RGV-TFPNVDVFVLGAEHRVFTE 388 (441)
T ss_pred ccc-ccccceEEEecCCcccccH
Confidence 443 5789999999987876554
No 239
>KOG0298|consensus
Probab=86.88 E-value=1.9 Score=44.22 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=67.1
Q ss_pred hCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEec
Q psy13286 190 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFD 269 (351)
Q Consensus 190 ~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~ 269 (351)
.....++|+|..-......+...+...++... ..++ + ++-...+..|++ --.+++-+...+.|+|+-++.||+..+
T Consensus 1218 k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~-~~~~-t-~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~e 1293 (1394)
T KOG0298|consen 1218 KNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQ-LDGE-T-EDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVE 1293 (1394)
T ss_pred cCcCceEEEEEehHHHHHHHHHHHHhhhhHhh-hccC-C-cchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheec
Confidence 33456788888765555555555544444321 2222 1 122344556655 223456778889999999999999999
Q ss_pred CCCChhhHhhhccccccCCCce
Q psy13286 270 FPKMAETYLHRIGRSGRYGHLG 291 (351)
Q Consensus 270 ~p~s~~~~~q~~GR~gR~~~~~ 291 (351)
+-.++..-.|.+||+.|.|+.-
T Consensus 1294 PiLN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1294 PILNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred cccCchHHHhhhhhhhhccccc
Confidence 9999999999999999999864
No 240
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=86.70 E-value=3.5 Score=39.74 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=52.7
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH---HHh-CCCcEEEEccHHHHHHHhccCcCCCCc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM---RIY-QKVHLIIATPGRILDLMDKQVANMDHC 99 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 99 (351)
+.++||.|+++..++++++.+.+ .++++..++|+.+..+... .+. ...+|+|+|- .+. ..+++..+
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~----~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~a-rGIDip~V 326 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLER----HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAA-RGLHIDGV 326 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHH----cCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhh-cCCCccCC
Confidence 46899999999999888887754 3788999999876543322 222 3588999994 222 24567888
Q ss_pred cEEEEccc
Q psy13286 100 KILVLDEA 107 (351)
Q Consensus 100 ~lvViDE~ 107 (351)
++||.-+.
T Consensus 327 ~~VInyd~ 334 (572)
T PRK04537 327 KYVYNYDL 334 (572)
T ss_pred CEEEEcCC
Confidence 88876543
No 241
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.61 E-value=2.6 Score=38.23 Aligned_cols=86 Identities=9% Similarity=0.074 Sum_probs=46.9
Q ss_pred CceEEEEECCcch---HHHHHHHhC--CCcEE-EEccHHHHHHHhccCcCCCCccEEEEcccccccCcc-hHHHHHHHHH
Q psy13286 52 NVKVMVTTGGTNL---RDDIMRIYQ--KVHLI-IATPGRILDLMDKQVANMDHCKILVLDEADKLLSQD-FKGMLDHVIS 124 (351)
Q Consensus 52 ~~~v~~~~~~~~~---~~~~~~~~~--~~~Il-v~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~-~~~~~~~~~~ 124 (351)
+.+|..++.++-. ..++..+.+ +.++. +.+++.+...+.. ..+.++|+||++.+..... .-..+..++.
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 4566666665432 122333222 33333 3355555554432 3678999999999875432 1234455555
Q ss_pred hCCCC-CcEEEEEeeCcc
Q psy13286 125 ILPHE-RQILLYSATFPL 141 (351)
Q Consensus 125 ~~~~~-~~~i~~SaT~~~ 141 (351)
....+ -.++.+|||...
T Consensus 282 ~~~~~~e~~LVlsat~~~ 299 (388)
T PRK12723 282 ACGRDAEFHLAVSSTTKT 299 (388)
T ss_pred hcCCCCeEEEEEcCCCCH
Confidence 44333 357888998753
No 242
>KOG1805|consensus
Probab=86.01 E-value=1.4 Score=43.82 Aligned_cols=98 Identities=14% Similarity=0.091 Sum_probs=58.7
Q ss_pred ccCCc-chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchH-----------------H
Q psy13286 5 RQEPT-QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLR-----------------D 66 (351)
Q Consensus 5 ~tgs~-~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~ 66 (351)
.||++ ++..|-+++.+.+ +++|+.+-|..-+.-+.-.++.+ ++.+.-+-...... .
T Consensus 695 GTGKTTtI~~LIkiL~~~g--kkVLLtsyThsAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~ 768 (1100)
T KOG1805|consen 695 GTGKTTTISLLIKILVALG--KKVLLTSYTHSAVDNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYA 768 (1100)
T ss_pred CCCchhhHHHHHHHHHHcC--CeEEEEehhhHHHHHHHHHHhcc----CcceeecCCccccchHHHHHhcccccchhhHH
Confidence 35554 4444444455544 58999999998886666555443 33333222222222 2
Q ss_pred HHHHHhCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccC
Q psy13286 67 DIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLS 112 (351)
Q Consensus 67 ~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~ 112 (351)
.+....+++.|+.+|--.+.+.+. ....||+.|||||-.+..
T Consensus 769 ~l~~~~~~~~IVa~TClgi~~plf----~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 769 DLKKFLDQTSIVACTCLGINHPLF----VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred HHHHHhCCCcEEEEEccCCCchhh----hccccCEEEEcccccccc
Confidence 233445578888888766654332 346799999999997754
No 243
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.77 E-value=2 Score=40.63 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=55.4
Q ss_pred CcccccCCcchhhhcccC-c--CCCCCceEEEEcCCHHHHHHHHHHHHHHHhh--C-------CceEEEEECCcchHHHH
Q psy13286 1 MVQARQEPTQFLYLNKLT-P--AKITSKATLIIVPTRELALQTSQICIELAKH--L-------NVKVMVTTGGTNLRDDI 68 (351)
Q Consensus 1 ~~~a~tgs~~l~~l~~l~-~--~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~-------~~~v~~~~~~~~~~~~~ 68 (351)
|.+++||||---+++.+. . ..++ ..-|+.|.....++.....+..-+.. + +-..+.+......
T Consensus 1 lf~matgsgkt~~ma~lil~~y~kgy-r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~f---- 75 (812)
T COG3421 1 LFEMATGSGKTLVMAGLILECYKKGY-RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNF---- 75 (812)
T ss_pred CcccccCCChhhHHHHHHHHHHHhch-hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeeccc----
Confidence 568999998444433332 2 2233 45667777766665555433211100 0 0011111111110
Q ss_pred HHHhCCCcEEEEccHHHHHHHhccCc------CCCCccE-EEEcccccccC
Q psy13286 69 MRIYQKVHLIIATPGRILDLMDKQVA------NMDHCKI-LVLDEADKLLS 112 (351)
Q Consensus 69 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~------~~~~~~l-vViDE~h~~~~ 112 (351)
........|..+|.+.|...+.+... ++.+..+ ++-||+|++-.
T Consensus 76 sehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 76 SEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred CccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 11234578999999999877654332 2344444 46799999854
No 244
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=85.66 E-value=1.4 Score=32.92 Aligned_cols=37 Identities=8% Similarity=-0.011 Sum_probs=22.5
Q ss_pred CcccccCCcchhhhcccCcCCCCC-ceEEEEcCCHHHH
Q psy13286 1 MVQARQEPTQFLYLNKLTPAKITS-KATLIIVPTRELA 37 (351)
Q Consensus 1 ~~~a~tgs~~l~~l~~l~~~~~~~-~~~lil~P~~~L~ 37 (351)
+|..|+|+|--.++..+....... ..++++.+.....
T Consensus 6 ~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 6 LIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred EEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence 467888998555555554443432 2577777765554
No 245
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=85.62 E-value=5.1 Score=33.24 Aligned_cols=113 Identities=14% Similarity=0.234 Sum_probs=61.6
Q ss_pred EEEcCCHHHHHHHHHHHHHHHhhCC--ceEEEEECCcchH---------HHHHHHhCCCcEEEEccHHHHHHHh----cc
Q psy13286 28 LIIVPTRELALQTSQICIELAKHLN--VKVMVTTGGTNLR---------DDIMRIYQKVHLIIATPGRILDLMD----KQ 92 (351)
Q Consensus 28 lil~P~~~L~~q~~~~~~~~~~~~~--~~v~~~~~~~~~~---------~~~~~~~~~~~Ilv~Tp~~l~~~l~----~~ 92 (351)
.|+.+...++......+ +...+ .+...++|..... ..+.....+..|+..+.+.+...+. .+
T Consensus 10 fv~g~~N~~a~~~~~~i---a~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~ 86 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAI---AENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDG 86 (219)
T ss_dssp S--TTTTHHHHHHHHHH---HHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTT
T ss_pred CCcCCcHHHHHHHHHHH---HhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcc
Confidence 45677778885555544 44333 3456677765431 1122222467788888888754332 11
Q ss_pred C-----cCCCCccEEEEcccccccCcc-hHHHHHHHHHhCC-CCCcEEEEEeeCcchH
Q psy13286 93 V-----ANMDHCKILVLDEADKLLSQD-FKGMLDHVISILP-HERQILLYSATFPLTV 143 (351)
Q Consensus 93 ~-----~~~~~~~lvViDE~h~~~~~~-~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~ 143 (351)
. ..+...+++++|++|.+.... ....+..+...+. ...++++.|...|..+
T Consensus 87 ~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 87 EIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp SHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred cchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 1 125788999999999877643 3344444544442 3445666665655543
No 246
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=84.99 E-value=1.8 Score=30.01 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=31.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 228 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 228 (351)
..++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 51 ~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 51 DKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 467899998877888999999999998899999875
No 247
>KOG0350|consensus
Probab=84.67 E-value=3.1 Score=38.36 Aligned_cols=79 Identities=9% Similarity=0.085 Sum_probs=56.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHH-HHHHHHHHhhcCCccEEEEeCc-------CCCCCCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQA-HRNRVFHDFRSGLCRNLVCSDL-------FTRGIDVQ 260 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~-~r~~~~~~f~~g~~~ilv~T~~-------~~~G~di~ 260 (351)
.-+++|.++++.-+..+++.|.+. |..|+.+.|.-+-+ +.......-....++|||+|+. ...|+|+.
T Consensus 215 ~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk 294 (620)
T KOG0350|consen 215 RLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLK 294 (620)
T ss_pred ceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchh
Confidence 457999999999999999999876 56677777765432 3333334444456799999982 35788898
Q ss_pred CCCEEEEecCC
Q psy13286 261 AVNVVINFDFP 271 (351)
Q Consensus 261 ~~~~Vi~~~~p 271 (351)
+++.+|.-...
T Consensus 295 ~LrfLVIDEAD 305 (620)
T KOG0350|consen 295 HLRFLVIDEAD 305 (620)
T ss_pred hceEEEechHH
Confidence 88887765443
No 248
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=84.62 E-value=8.4 Score=31.35 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=62.7
Q ss_pred cccccCCcchhhhccc---CcCCCCCceEEEEcC--CHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCc
Q psy13286 2 VQARQEPTQFLYLNKL---TPAKITSKATLIIVP--TRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVH 76 (351)
Q Consensus 2 ~~a~tgs~~l~~l~~l---~~~~~~~~~~lil~P--~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 76 (351)
+..|||+|--..+..| ....+ .++.+++- .|.=+ .++++.+++..++.+............
T Consensus 6 lvGptGvGKTTt~aKLAa~~~~~~--~~v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~~~~~~~~~--------- 71 (196)
T PF00448_consen 6 LVGPTGVGKTTTIAKLAARLKLKG--KKVALISADTYRIGA---VEQLKTYAEILGVPFYVARTESDPAEI--------- 71 (196)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTT----EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESSTTSCHHHH---------
T ss_pred EECCCCCchHhHHHHHHHHHhhcc--ccceeecCCCCCccH---HHHHHHHHHHhccccchhhcchhhHHH---------
Confidence 5678999722222222 22222 34444432 33333 455566666667766554433322221
Q ss_pred EEEEccHHHHHHHhccCcCCCCccEEEEcccccccCc-chHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHH
Q psy13286 77 LIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQ-DFKGMLDHVISILPHERQILLYSATFPLTVKNFM 147 (351)
Q Consensus 77 Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 147 (351)
+.+.++.. ..+++++|+||-+-+.... .....+..+........-.+.+|||........+
T Consensus 72 --------~~~~l~~~--~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~ 133 (196)
T PF00448_consen 72 --------AREALEKF--RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA 133 (196)
T ss_dssp --------HHHHHHHH--HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH
T ss_pred --------HHHHHHHH--hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH
Confidence 11122110 1356789999999865443 3345666666666555668889999876544333
No 249
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=84.32 E-value=3.7 Score=37.97 Aligned_cols=72 Identities=10% Similarity=0.092 Sum_probs=50.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHH-hCCCcEEEEccHHHHHHHhccCcCCCCcc
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRI-YQKVHLIIATPGRILDLMDKQVANMDHCK 100 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 100 (351)
.++||.|+++.-+..+.+.+. ..++++..++|+....+.. ... ....+|+|+|- .+ ...+++..++
T Consensus 256 ~~~lVF~~t~~~~~~l~~~L~----~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~-~rGiDip~v~ 325 (423)
T PRK04837 256 DRAIIFANTKHRCEEIWGHLA----ADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VA-ARGLHIPAVT 325 (423)
T ss_pred CeEEEEECCHHHHHHHHHHHH----hCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hh-hcCCCccccC
Confidence 689999999999887777664 3478999999987654332 222 23689999994 22 2345677888
Q ss_pred EEEEcc
Q psy13286 101 ILVLDE 106 (351)
Q Consensus 101 lvViDE 106 (351)
+||.-+
T Consensus 326 ~VI~~d 331 (423)
T PRK04837 326 HVFNYD 331 (423)
T ss_pred EEEEeC
Confidence 776543
No 250
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=84.15 E-value=4.4 Score=39.46 Aligned_cols=59 Identities=8% Similarity=0.116 Sum_probs=53.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
.+.+||.+|+++-+....+.|+..++.+..+++..+..++..+++...+|+.+++++|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 46799999999999999999999999999999999999888889999999999999885
No 251
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=84.14 E-value=4.5 Score=41.73 Aligned_cols=59 Identities=8% Similarity=0.080 Sum_probs=52.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc--CCccEEEEeC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLVCSD 251 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~ilv~T~ 251 (351)
++.+||.+|.++-+..-...|...++.+..+.++++..++..+++.+.+ |.+++|++|+
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 4679999999999886667777789999999999999999999998877 8999999997
No 252
>PRK08084 DNA replication initiation factor; Provisional
Probab=84.06 E-value=6.8 Score=32.90 Aligned_cols=98 Identities=4% Similarity=0.047 Sum_probs=47.6
Q ss_pred HHHHHHHhhCCceEEEEECCcchHHH-----H-HHH-hCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCc-
Q psy13286 42 QICIELAKHLNVKVMVTTGGTNLRDD-----I-MRI-YQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQ- 113 (351)
Q Consensus 42 ~~~~~~~~~~~~~v~~~~~~~~~~~~-----~-~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~- 113 (351)
..++++....+.....++|.....+- + ... ..+..+.+.+.+........-...+.+.+++++||+|.+...
T Consensus 34 ~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~ 113 (235)
T PRK08084 34 AALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDE 113 (235)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCH
Confidence 34444443334456777776543221 1 111 134567776666543221111112345689999999987643
Q ss_pred chHHHHHHHHHhCC-C-CCcEEEEEeeCc
Q psy13286 114 DFKGMLDHVISILP-H-ERQILLYSATFP 140 (351)
Q Consensus 114 ~~~~~~~~~~~~~~-~-~~~~i~~SaT~~ 140 (351)
.+...+..++.... . ..++++ |++.+
T Consensus 114 ~~~~~lf~l~n~~~e~g~~~li~-ts~~~ 141 (235)
T PRK08084 114 LWEMAIFDLYNRILESGRTRLLI-TGDRP 141 (235)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEE-eCCCC
Confidence 33444444444332 2 234554 44433
No 253
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=83.77 E-value=7.5 Score=28.60 Aligned_cols=76 Identities=12% Similarity=0.231 Sum_probs=50.5
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHHhC-CCcEEEEccHHHHHHHhccCcCCCC
Q psy13286 23 TSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRIYQ-KVHLIIATPGRILDLMDKQVANMDH 98 (351)
Q Consensus 23 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~ 98 (351)
.+.++|+.+++..-+.++.+.+++ .+..+..++|+.+..... ....+ ...|+++|.. + ...+++..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~-~-----~~G~d~~~ 96 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV-I-----ARGIDLPN 96 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh-h-----hcCcChhh
Confidence 447899999999999888888766 467788888887543221 22222 3568888853 2 12335566
Q ss_pred ccEEEEcccc
Q psy13286 99 CKILVLDEAD 108 (351)
Q Consensus 99 ~~lvViDE~h 108 (351)
.+.+|+.+..
T Consensus 97 ~~~vi~~~~~ 106 (131)
T cd00079 97 VSVVINYDLP 106 (131)
T ss_pred CCEEEEeCCC
Confidence 7777777664
No 254
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=83.77 E-value=13 Score=28.93 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=51.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcC----CeEEEeccCCCHH-HHHHHHHHhhcCCccEEEEeCc------CCCCCCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELG----YCCYYIHARMAQA-HRNRVFHDFRSGLCRNLVCSDL------FTRGIDVQ 260 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~-~r~~~~~~f~~g~~~ilv~T~~------~~~G~di~ 260 (351)
+..++++.+++++.++...+.+.... ..+..++++.+.. +....+ .+..+|+|+|.. .....++.
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~~ 118 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINIS 118 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTGT
T ss_pred CCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhccccccccccc
Confidence 45689999999999999998887763 4678889988754 222222 677899999962 22234666
Q ss_pred CCCEEEEec
Q psy13286 261 AVNVVINFD 269 (351)
Q Consensus 261 ~~~~Vi~~~ 269 (351)
.+++||.-+
T Consensus 119 ~~~~iViDE 127 (169)
T PF00270_consen 119 RLSLIVIDE 127 (169)
T ss_dssp TESEEEEET
T ss_pred cceeeccCc
Confidence 666666533
No 255
>KOG0329|consensus
Probab=83.72 E-value=5.4 Score=33.46 Aligned_cols=111 Identities=9% Similarity=0.121 Sum_probs=69.9
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc-----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC------cCCCCCCCCCC
Q psy13286 194 NQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD------LFTRGIDVQAV 262 (351)
Q Consensus 194 ~~~lIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~------~~~~G~di~~~ 262 (351)
-.++|.|.+++-|..+.+...+. +..+..+.|+++.+.-++.+.. -..|+|+|+ +-...+++.++
T Consensus 111 vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~v 186 (387)
T KOG0329|consen 111 VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNV 186 (387)
T ss_pred EEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhc
Confidence 35799999999999888877664 5788999999987665655553 678999997 23456778787
Q ss_pred CEEEEecCCCChh-----hHhhhccccccCCCceeEEEEeccchHHHHHHHHHH
Q psy13286 263 NVVINFDFPKMAE-----TYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKE 311 (351)
Q Consensus 263 ~~Vi~~~~p~s~~-----~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~ 311 (351)
.+-+.-...+-.+ .-.|.+= |+..+.+.+..++..-...++.+++.
T Consensus 187 khFvlDEcdkmle~lDMrRDvQEif---r~tp~~KQvmmfsatlskeiRpvC~k 237 (387)
T KOG0329|consen 187 KHFVLDECDKMLEQLDMRRDVQEIF---RMTPHEKQVMMFSATLSKEIRPVCHK 237 (387)
T ss_pred ceeehhhHHHHHHHHHHHHHHHHHh---hcCcccceeeeeeeecchhhHHHHHh
Confidence 7765433221111 1133332 33444555555554443445555543
No 256
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=83.07 E-value=2 Score=40.27 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=57.0
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhc--cCcCCCCc
Q psy13286 22 ITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDK--QVANMDHC 99 (351)
Q Consensus 22 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~ 99 (351)
..+....|++|+.+-+.+.++-++.+..... +.......-.....|...--....+.+.. +..+-.+.
T Consensus 116 ~~~~~~~i~A~s~~qa~~~F~~ar~mv~~~~----------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~ 185 (546)
T COG4626 116 RSGAGIYILAPSVEQAANSFNPARDMVKRDD----------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNS 185 (546)
T ss_pred hcCCcEEEEeccHHHHHHhhHHHHHHHHhCc----------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCc
Confidence 5557999999999999999999988876543 11111000000111222211122222222 23345677
Q ss_pred cEEEEcccccccCc-chHHHHHHHHHhCCCCCcEEEEEe
Q psy13286 100 KILVLDEADKLLSQ-DFKGMLDHVISILPHERQILLYSA 137 (351)
Q Consensus 100 ~lvViDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~Sa 137 (351)
.+.|+||.|..... .+...+..-+... ++.++++.|.
T Consensus 186 ~~~I~DEih~f~~~~~~~~~~~~g~~ar-~~~l~~~ITT 223 (546)
T COG4626 186 VGAIIDELHLFGKQEDMYSEAKGGLGAR-PEGLVVYITT 223 (546)
T ss_pred ceEEEehhhhhcCHHHHHHHHHhhhccC-cCceEEEEec
Confidence 89999999987666 3333333333333 3444555544
No 257
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=82.84 E-value=6.9 Score=36.61 Aligned_cols=73 Identities=7% Similarity=0.139 Sum_probs=52.4
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc------CCCCCCCCCCC
Q psy13286 194 NQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL------FTRGIDVQAVN 263 (351)
Q Consensus 194 ~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~------~~~G~di~~~~ 263 (351)
.++||.+++++-|..+.+.++.. ++.+..++|+.+.+.+... + .+..+|+|+|+- ....+++..+.
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~~IiV~TP~rL~~~~~~~~~~l~~v~ 151 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK---L-RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH---H-cCCCcEEEEChHHHHHHHHcCCcccccce
Confidence 36999999999999888887654 5677788898876554332 2 367899999961 23456777888
Q ss_pred EEEEecC
Q psy13286 264 VVINFDF 270 (351)
Q Consensus 264 ~Vi~~~~ 270 (351)
++|.-..
T Consensus 152 ~lViDEa 158 (456)
T PRK10590 152 ILVLDEA 158 (456)
T ss_pred EEEeecH
Confidence 7775443
No 258
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=82.65 E-value=22 Score=36.21 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=76.8
Q ss_pred CcEEEEeCchH----HHHHHHHHHHhcC--CeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-cCCC----CCC----
Q psy13286 194 NQSIIFCNSTQ----RVELLAKKITELG--YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD-LFTR----GID---- 258 (351)
Q Consensus 194 ~~~lIf~~~~~----~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~----G~d---- 258 (351)
.+.|++.|+++ +++++.+.+...+ +.+..++|+.+..+|+.+ ..+..+||+++. ++.. ..+
T Consensus 116 a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~----~~~pp~IllTNpdMLh~~llr~~~~~~~ 191 (851)
T COG1205 116 ARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAI----IRNPPDILLTNPDMLHYLLLRNHDAWLW 191 (851)
T ss_pred ccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHH----HhCCCCEEEeCHHHHHHHhccCcchHHH
Confidence 47899999975 5567777777776 888999999999988744 458899999985 4333 222
Q ss_pred -CCCCCEEEEecCC-------CChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhccccCC
Q psy13286 259 -VQAVNVVINFDFP-------KMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIKS 318 (351)
Q Consensus 259 -i~~~~~Vi~~~~p-------~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~~ 318 (351)
..++.+||.-.+- ......+.|..|..|.++....+++.+..-..--+..++..+.+++.
T Consensus 192 ~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~ 259 (851)
T COG1205 192 LLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEV 259 (851)
T ss_pred HHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCccee
Confidence 1245666643332 22455567776666655555555555544333345555666666666
No 259
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=82.50 E-value=7.6 Score=38.29 Aligned_cols=62 Identities=13% Similarity=0.129 Sum_probs=48.7
Q ss_pred HHHHhhCCCCcEEEEeCchHHHHHHHHHHHh----cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc
Q psy13286 185 NTLFSKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL 252 (351)
Q Consensus 185 ~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 252 (351)
...+....+.++.|.++++.-|.+.++.+.. .|+.+..+.|+++..+|..... .+|+++|..
T Consensus 89 pa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 89 PAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred HHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 3335666677899999999988888877765 4889999999999877665542 689999986
No 260
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.43 E-value=1.4 Score=43.73 Aligned_cols=47 Identities=11% Similarity=0.019 Sum_probs=35.2
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELA 48 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 48 (351)
|++||||+| +.|.|+...... ...+++|.+.|..=..|..+.+++..
T Consensus 33 llEsPTGtGKTlslL~~aL~~~~~~~-~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 33 ILEMPSGTGKTISLLSLILAYQQEKP-EVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred EEeCCCCCCccHHHHHHHHHHHHhcc-ccccEEEEcccchHHHHHHHHHHhhh
Confidence 579999997 444444433222 22699999999999999999999864
No 261
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=82.36 E-value=12 Score=30.95 Aligned_cols=99 Identities=11% Similarity=0.117 Sum_probs=45.3
Q ss_pred HHHHHHHHhhCCceEEEEECCcchHHH-----H-HHH-hCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCc
Q psy13286 41 SQICIELAKHLNVKVMVTTGGTNLRDD-----I-MRI-YQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQ 113 (351)
Q Consensus 41 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~-~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~ 113 (351)
...++++.....-..+.++|.....+. + ... ..+..++..+...+..........+...+++|+||+|.+...
T Consensus 26 ~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lLvIDdi~~l~~~ 105 (226)
T TIGR03420 26 LAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQADLVCLDDVEAIAGQ 105 (226)
T ss_pred HHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcccCCEEEEeChhhhcCC
Confidence 444444433334456666666543222 1 111 123455555544443221111112345579999999987553
Q ss_pred c-hHHHHHHHHHhCCCCCcEEEEEeeC
Q psy13286 114 D-FKGMLDHVISILPHERQILLYSATF 139 (351)
Q Consensus 114 ~-~~~~~~~~~~~~~~~~~~i~~SaT~ 139 (351)
. ....+..++.........+++|++.
T Consensus 106 ~~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 106 PEWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 2 2344444443322221245555553
No 262
>PRK09401 reverse gyrase; Reviewed
Probab=82.01 E-value=6.5 Score=41.32 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=55.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcC----CeEEEe--ccCCCHHHHHHHHHHhhcCCccEEEEeCc-CC---CCCCCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELG----YCCYYI--HARMAQAHRNRVFHDFRSGLCRNLVCSDL-FT---RGIDVQA 261 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~----~~~~~~--~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~~---~G~di~~ 261 (351)
++.+++|.+|+++-+..+++.++..+ ..+..+ +++++..++.+..+.+.+|..+|+|+|+. +. ..+....
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~ 201 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKK 201 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 46789999999999999999988763 344333 44556777888888999999999999962 11 1333344
Q ss_pred CCEEEEec
Q psy13286 262 VNVVINFD 269 (351)
Q Consensus 262 ~~~Vi~~~ 269 (351)
++++|.-+
T Consensus 202 ~~~lVvDE 209 (1176)
T PRK09401 202 FDFVFVDD 209 (1176)
T ss_pred cCEEEEEC
Confidence 66666544
No 263
>KOG1132|consensus
Probab=81.96 E-value=60 Score=32.67 Aligned_cols=40 Identities=15% Similarity=0.386 Sum_probs=28.1
Q ss_pred HHhCCCcEEEEccHHHHHHHhccC--cCCCCccEEEEcccccc
Q psy13286 70 RIYQKVHLIIATPGRILDLMDKQV--ANMDHCKILVLDEADKL 110 (351)
Q Consensus 70 ~~~~~~~Ilv~Tp~~l~~~l~~~~--~~~~~~~lvViDE~h~~ 110 (351)
.+.++++|+++-+.-|.+-.-++. +++.+ ..||+||||.+
T Consensus 218 ~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAHNi 259 (945)
T KOG1132|consen 218 ELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAHNI 259 (945)
T ss_pred hhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccccH
Confidence 344568899998888877544443 44444 58999999966
No 264
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=81.84 E-value=2.7 Score=41.69 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=26.2
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEee
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSAT 138 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 138 (351)
...++||+||++++.... +..++...+...+++++.-+
T Consensus 415 ~~~~llIvDEaSMvd~~~----~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 415 IDCDLLIVDESSMMDTWL----ALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred ccCCEEEEeccccCCHHH----HHHHHHhCCCCCEEEEECcc
Confidence 457899999999764433 45556667777777776443
No 265
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=81.64 E-value=1.5 Score=40.76 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=35.8
Q ss_pred ccccCCcchhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC
Q psy13286 3 QARQEPTQFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL 51 (351)
Q Consensus 3 ~a~tgs~~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 51 (351)
-..||||--.-++++....+. .+||++|.+.||.|.+..|++|+...
T Consensus 38 LGvTGSGKTfT~AnVI~~~~r--PtLV~AhNKTLAaQLy~Efk~fFP~N 84 (663)
T COG0556 38 LGVTGSGKTFTMANVIAKVQR--PTLVLAHNKTLAAQLYSEFKEFFPEN 84 (663)
T ss_pred eeeccCCchhHHHHHHHHhCC--CeEEEecchhHHHHHHHHHHHhCcCc
Confidence 346888754444555444444 79999999999999999999998754
No 266
>KOG0344|consensus
Probab=81.62 E-value=13 Score=35.12 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=57.3
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHHh-CCCcEEEEccHHHHHHHhccCcCCCCc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRIY-QKVHLIIATPGRILDLMDKQVANMDHC 99 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 99 (351)
.+.+||.+-+.+-+.|.+..+. .+.++++..++|+....+.- .... ....++|+| +++.++ +++..+
T Consensus 387 ~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT-----dll~RG-iDf~gv 457 (593)
T KOG0344|consen 387 KPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT-----DLLARG-IDFKGV 457 (593)
T ss_pred CCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhccCeeEEEeh-----hhhhcc-ccccCc
Confidence 3799999999999999998876 45588999999997654332 2222 247789998 455555 689999
Q ss_pred cEEEEcccc
Q psy13286 100 KILVLDEAD 108 (351)
Q Consensus 100 ~lvViDE~h 108 (351)
++||-++..
T Consensus 458 n~VInyD~p 466 (593)
T KOG0344|consen 458 NLVINYDFP 466 (593)
T ss_pred ceEEecCCC
Confidence 999997765
No 267
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=81.59 E-value=27 Score=29.44 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=60.3
Q ss_pred CCCcEEEEeCc------------hHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc---CCccEEEEeCcCCCC
Q psy13286 192 QINQSIIFCNS------------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS---GLCRNLVCSDLFTRG 256 (351)
Q Consensus 192 ~~~~~lIf~~~------------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~ilv~T~~~~~G 256 (351)
+.+.+||+.+. ...++.+++.|+..|+.+. .+..++..+-.+.++.|.+ .....+++. .+++|
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG 85 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVE-VKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHG 85 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEE-EeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCC
Confidence 44567777763 4678999999999999874 5677788888888888874 234444444 56778
Q ss_pred CCCCCCCEEEEec-CCCChhhHhhhcc
Q psy13286 257 IDVQAVNVVINFD-FPKMAETYLHRIG 282 (351)
Q Consensus 257 ~di~~~~~Vi~~~-~p~s~~~~~q~~G 282 (351)
.. +.++-.| .+.+..+.++.+.
T Consensus 86 ~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 86 EE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred CC----CEEEEecCcEEEHHHHHHhhc
Confidence 65 6777777 5666777777774
No 268
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=81.36 E-value=3.9 Score=28.23 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=38.3
Q ss_pred eEEEEcCCHHHHHHHH-HHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHH
Q psy13286 26 ATLIIVPTRELALQTS-QICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRIL 86 (351)
Q Consensus 26 ~~lil~P~~~L~~q~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~ 86 (351)
++|++|++=--...+. ..+++.++..++.+....+... .......++|++++||+.-.
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~---~~~~~~~~~D~il~~~~i~~ 59 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGSIL---EVEEIADDADLILLTPQIAY 59 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETT---THHHHHTT-SEEEEEESSGG
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEeccc---ccccccCCCcEEEEcCccch
Confidence 5788888655555555 7777788888877766666522 12234567999999997663
No 269
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=81.35 E-value=2.5 Score=29.85 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=31.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 228 (351)
+..+++++|.+-..+...+..|+..|+.+..+.|++.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 4567999999878889999999999999888988875
No 270
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=81.22 E-value=15 Score=34.58 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=52.4
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc------CCCCCCCCCCC
Q psy13286 194 NQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL------FTRGIDVQAVN 263 (351)
Q Consensus 194 ~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~------~~~G~di~~~~ 263 (351)
.++||.+++++-+..+++.++.. ++.+..++|+.+...+ .+.+..+..+|+|+|.. -...+.+.+++
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~---~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ---LKQLEARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHH---HHHHhCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 57999999999999888877654 6778888998765433 34555677899999962 12245566777
Q ss_pred EEEEec
Q psy13286 264 VVINFD 269 (351)
Q Consensus 264 ~Vi~~~ 269 (351)
+||.-.
T Consensus 240 ~lViDE 245 (475)
T PRK01297 240 VMVLDE 245 (475)
T ss_pred eEEech
Confidence 776544
No 271
>PRK13766 Hef nuclease; Provisional
Probab=81.10 E-value=24 Score=35.56 Aligned_cols=123 Identities=12% Similarity=0.159 Sum_probs=72.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHhc-CC---eEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc------CCCCCCCC
Q psy13286 191 LQINQSIIFCNSTQRVELLAKKITEL-GY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL------FTRGIDVQ 260 (351)
Q Consensus 191 ~~~~~~lIf~~~~~~~~~l~~~L~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~------~~~G~di~ 260 (351)
..++++||.|+++..+...++.++.. +. .+..++|+.+..+|.++.. ..+|+|+|.- +..-+++.
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~~~~ 130 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAGRISLE 130 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcCCCChh
Confidence 34689999999999888777777664 33 6788999998887765543 3479999962 23345566
Q ss_pred CCCEEEEecCCCChhh--HhhhccccccC-CCceeEEEE--eccchHHHHHHHHHHhccccCCC
Q psy13286 261 AVNVVINFDFPKMAET--YLHRIGRSGRY-GHLGIAINL--ITYEDRYALHRIEKELGTEIKSI 319 (351)
Q Consensus 261 ~~~~Vi~~~~p~s~~~--~~q~~GR~gR~-~~~~~~i~~--~~~~~~~~~~~l~~~l~~~~~~~ 319 (351)
+++.||.-..-..... |...+ +.-+. ...+..+.+ ....+...+..+.+.++.....+
T Consensus 131 ~~~liVvDEaH~~~~~~~~~~i~-~~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~ 193 (773)
T PRK13766 131 DVSLLIFDEAHRAVGNYAYVYIA-ERYHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEV 193 (773)
T ss_pred hCcEEEEECCccccccccHHHHH-HHHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEE
Confidence 7777776554432111 11111 11111 112222222 22335566777777776554443
No 272
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=81.07 E-value=11 Score=37.65 Aligned_cols=74 Identities=12% Similarity=0.129 Sum_probs=52.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc---CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-cCCCCC---------C
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL---GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD-LFTRGI---------D 258 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~G~---------d 258 (351)
++.++|+.+++++-+....+.++.. ++.+..++|+.+.++|..+. ...+|+|+|+ .+..++ .
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~-----~~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWAR-----EHARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHh-----cCCCEEEEChHHHHHhhccchhHHHHH
Confidence 3468999999999999998888875 56788899999887664332 2468999996 332221 1
Q ss_pred CCCCCEEEEecC
Q psy13286 259 VQAVNVVINFDF 270 (351)
Q Consensus 259 i~~~~~Vi~~~~ 270 (351)
+.++++||.-..
T Consensus 155 l~~l~~vViDEa 166 (742)
T TIGR03817 155 LRRLRYVVIDEC 166 (742)
T ss_pred HhcCCEEEEeCh
Confidence 457777776443
No 273
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=80.99 E-value=4.3 Score=28.14 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=33.4
Q ss_pred hCCCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCCH
Q psy13286 190 KLQINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQ 229 (351)
Q Consensus 190 ~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~ 229 (351)
..+..++++||.+-..+..++..|...|+. +..+.|++..
T Consensus 53 ~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~ 93 (100)
T smart00450 53 LDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKE 93 (100)
T ss_pred CCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHH
Confidence 344678999999888999999999999987 8888998753
No 274
>PTZ00110 helicase; Provisional
Probab=80.52 E-value=9.3 Score=36.68 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=50.4
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHHhC-CCcEEEEccHHHHHHHhccCcCCCC
Q psy13286 23 TSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRIYQ-KVHLIIATPGRILDLMDKQVANMDH 98 (351)
Q Consensus 23 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~ 98 (351)
.+.++||.|+++.-+.++...++ ..++.+..++|+....+.. ....+ ..+|+|+|. .+ ...+++..
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~----~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~-~rGIDi~~ 445 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELR----LDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VA-SRGLDVKD 445 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHH----HcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hh-hcCCCccc
Confidence 34799999999999988877764 3477888999987754432 22322 578999994 22 22446778
Q ss_pred ccEEEE
Q psy13286 99 CKILVL 104 (351)
Q Consensus 99 ~~lvVi 104 (351)
+++||.
T Consensus 446 v~~VI~ 451 (545)
T PTZ00110 446 VKYVIN 451 (545)
T ss_pred CCEEEE
Confidence 888775
No 275
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=79.77 E-value=4.2 Score=28.46 Aligned_cols=37 Identities=11% Similarity=0.260 Sum_probs=31.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCC-eEEEeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 228 (351)
++.++++||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 55 RATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 456899999988888888999988887 5888888874
No 276
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=79.31 E-value=6.2 Score=37.77 Aligned_cols=123 Identities=12% Similarity=0.177 Sum_probs=81.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-CCCC--------CCC----
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-FTRG--------IDV---- 259 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~~~G--------~di---- 259 (351)
.|-+||..|-..-.+.=.+.|+..|+.+..+++.++.+++..+++.+..|.+++|.-++- +... ..+
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~v 136 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVA 136 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEE
Confidence 578999999999999889999999999999999999999999999999999999866652 1111 111
Q ss_pred -CCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhccccC
Q psy13286 260 -QAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIK 317 (351)
Q Consensus 260 -~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~ 317 (351)
..+.||-..+-..-+ + ..++|+.-..-....++.+.-..+......|.+.|+....
T Consensus 137 IDEAHCiSqWGhdFRP-~-Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~ 193 (590)
T COG0514 137 IDEAHCISQWGHDFRP-D-YRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDA 193 (590)
T ss_pred echHHHHhhcCCccCH-h-HHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCc
Confidence 111122222211111 2 2444443222123455555556666777888888777664
No 277
>PRK09694 helicase Cas3; Provisional
Probab=78.81 E-value=7.5 Score=39.41 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=51.6
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH-------HHHH-hCC----CcEEEEccHHHHHHH
Q psy13286 22 ITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD-------IMRI-YQK----VHLIIATPGRILDLM 89 (351)
Q Consensus 22 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~-~~~----~~Ilv~Tp~~l~~~l 89 (351)
..+++++|+++|..-++++++.+++... .+.++..+++.....+. +..+ .++ ..|+|+|. +..
T Consensus 558 ~~g~~vLVf~NTV~~Aq~ly~~L~~~~~-~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQ--ViE-- 632 (878)
T PRK09694 558 NAGAQVCLICNLVDDAQKLYQRLKELNN-TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQ--VVE-- 632 (878)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECc--chh--
Confidence 4457899999999999999999876531 13678899998653222 2222 111 36999993 322
Q ss_pred hccCcCCCCccEEEEcccc
Q psy13286 90 DKQVANMDHCKILVLDEAD 108 (351)
Q Consensus 90 ~~~~~~~~~~~lvViDE~h 108 (351)
..+++ +++++|-|-+-
T Consensus 633 --~GLDI-d~DvlItdlaP 648 (878)
T PRK09694 633 --QSLDL-DFDWLITQLCP 648 (878)
T ss_pred --heeec-CCCeEEECCCC
Confidence 13345 47888888543
No 278
>PRK06893 DNA replication initiation factor; Validated
Probab=78.47 E-value=16 Score=30.52 Aligned_cols=46 Identities=13% Similarity=0.331 Sum_probs=27.7
Q ss_pred CCCccEEEEcccccccCc-chHHHHHHHHHhCC-CCCcEEEEEeeCcc
Q psy13286 96 MDHCKILVLDEADKLLSQ-DFKGMLDHVISILP-HERQILLYSATFPL 141 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~-~~~~~~~~~~~~~~-~~~~~i~~SaT~~~ 141 (351)
+.+.+++++||+|.+... .+...+..+..... ...+++++|++.++
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 467799999999987543 33334444444332 23446677776543
No 279
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=77.36 E-value=14 Score=37.39 Aligned_cols=63 Identities=8% Similarity=0.063 Sum_probs=48.9
Q ss_pred HHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc
Q psy13286 184 LNTLFSKLQINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL 252 (351)
Q Consensus 184 l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 252 (351)
+..+++...+..++|.++++.-|.+.++.+... |+.+..+.|+++...|.... ..+|+++|+.
T Consensus 114 Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 114 LPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred HHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECCh
Confidence 333444555677999999999999888888663 78999999999988876554 4789999974
No 280
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=76.59 E-value=18 Score=33.73 Aligned_cols=111 Identities=10% Similarity=0.200 Sum_probs=58.3
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhCC--ceEEEEECCcchHHH-----H-HHH---hCCCcEEEEccHHHHHHHhc---
Q psy13286 26 ATLIIVPTRELALQTSQICIELAKHLN--VKVMVTTGGTNLRDD-----I-MRI---YQKVHLIIATPGRILDLMDK--- 91 (351)
Q Consensus 26 ~~lil~P~~~L~~q~~~~~~~~~~~~~--~~v~~~~~~~~~~~~-----~-~~~---~~~~~Ilv~Tp~~l~~~l~~--- 91 (351)
-..++.|...++... ++++....+ .+-..++|+....+- + ..+ ..+..++..|.+.+...+..
T Consensus 115 dnFv~g~~n~~A~~a---a~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~ 191 (450)
T PRK14087 115 ENFVIGSSNEQAFIA---VQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQ 191 (450)
T ss_pred hcccCCCcHHHHHHH---HHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHH
Confidence 345677877766443 344443322 345667776543211 1 111 23567888888777544321
Q ss_pred ---cCc-----CCCCccEEEEcccccccCcc-hHHHHHHHHHhCC-CCCcEEEEEeeCc
Q psy13286 92 ---QVA-----NMDHCKILVLDEADKLLSQD-FKGMLDHVISILP-HERQILLYSATFP 140 (351)
Q Consensus 92 ---~~~-----~~~~~~lvViDE~h~~~~~~-~~~~~~~~~~~~~-~~~~~i~~SaT~~ 140 (351)
+.+ .+.+.+++|+||+|.+.... ....+..+...+. ...|++ +|+..+
T Consensus 192 ~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iI-ltsd~~ 249 (450)
T PRK14087 192 KTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLF-FSSDKS 249 (450)
T ss_pred HhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEE-EECCCC
Confidence 111 24678999999999776432 2334444444432 233454 554433
No 281
>KOG0340|consensus
Probab=76.50 E-value=8.1 Score=34.20 Aligned_cols=55 Identities=9% Similarity=0.040 Sum_probs=42.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
+--++|++++++.|..+++.|... +..+..+.|+++.-.+...+ +.+.+++|+|+
T Consensus 75 giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L----~~rPHvVvatP 133 (442)
T KOG0340|consen 75 GIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAIL----SDRPHVVVATP 133 (442)
T ss_pred cceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhc----ccCCCeEecCc
Confidence 456899999999999999999776 57889999998754333222 36678899886
No 282
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=76.35 E-value=10 Score=34.27 Aligned_cols=69 Identities=9% Similarity=0.109 Sum_probs=37.1
Q ss_pred EEEccHHHHHHHhccCcCCCCccEEEEcccccccCcc-hHHHHHHHHHhCCCCCcEEEEEeeCcchH-HHHHHHh
Q psy13286 78 IIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQD-FKGMLDHVISILPHERQILLYSATFPLTV-KNFMEKH 150 (351)
Q Consensus 78 lv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~SaT~~~~~-~~~~~~~ 150 (351)
.+.++..+...+. .+.+.++|+||.+-+..... ..+.+..+.........++++|||..... .+.++.|
T Consensus 199 ~~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 199 AVKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred ecCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 3455555544443 23566999999998543332 22333333222222334788899875443 3444444
No 283
>KOG1131|consensus
Probab=76.17 E-value=4.6 Score=37.57 Aligned_cols=31 Identities=29% Similarity=0.275 Sum_probs=23.5
Q ss_pred CCccEE--EEeCcCCCCCCCCCCC--EEEEecCCC
Q psy13286 242 GLCRNL--VCSDLFTRGIDVQAVN--VVINFDFPK 272 (351)
Q Consensus 242 g~~~il--v~T~~~~~G~di~~~~--~Vi~~~~p~ 272 (351)
|.-.+| |+-....+|+|+.+-- .||.++.|.
T Consensus 589 gRGavl~sVargkVsEgidF~hhyGR~ViM~gIP~ 623 (755)
T KOG1131|consen 589 GRGAVLLSVARGKVSEGIDFDHHYGREVIMEGIPY 623 (755)
T ss_pred CCCceEEEEecCccccCcccccccCceEEEEeccc
Confidence 444444 6668899999997654 899999984
No 284
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=76.07 E-value=8.7 Score=37.42 Aligned_cols=28 Identities=4% Similarity=0.048 Sum_probs=24.2
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhC
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHL 51 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~ 51 (351)
+.++++.+|...-+.++++.+++.+...
T Consensus 216 Gi~IlvTAH~~~ts~evF~rv~~~le~l 243 (752)
T PHA03333 216 EIDIVVQAQRKTMCLTLYNRVETVVHAY 243 (752)
T ss_pred CCeEEEECCChhhHHHHHHHHHHHHHHh
Confidence 4789999999999999999888888743
No 285
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=76.07 E-value=7.9 Score=39.40 Aligned_cols=135 Identities=15% Similarity=0.271 Sum_probs=73.4
Q ss_pred cccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHH-----HHHhh--C--CceEEEEECCc------
Q psy13286 2 VQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICI-----ELAKH--L--NVKVMVTTGGT------ 62 (351)
Q Consensus 2 ~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~-----~~~~~--~--~~~v~~~~~~~------ 62 (351)
+.++||+| .+..+..+....+. .+.||+||+.++.+.+...+. ..... . .+....+.+..
T Consensus 64 ~~M~TGtGKT~~~~~~i~~l~~~~~~-~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr 142 (986)
T PRK15483 64 IKMETGTGKTYVYTRLMYELHQKYGL-FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGR 142 (986)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccccccc
Confidence 57888887 22233333333333 689999999999888776554 11111 1 23444444332
Q ss_pred -chHHHHHHHhC-------CCcEEEEccHHHHHHHh--cc--------C-cCCCCc----cEEEEcccccccCcchHHHH
Q psy13286 63 -NLRDDIMRIYQ-------KVHLIIATPGRILDLMD--KQ--------V-ANMDHC----KILVLDEADKLLSQDFKGML 119 (351)
Q Consensus 63 -~~~~~~~~~~~-------~~~Ilv~Tp~~l~~~l~--~~--------~-~~~~~~----~lvViDE~h~~~~~~~~~~~ 119 (351)
.....+..... ...|+|+|.+++..-.. .. . .++..+ -.||+||.|++...+ ..+
T Consensus 143 ~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~--k~~ 220 (986)
T PRK15483 143 KNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDN--KFY 220 (986)
T ss_pred ccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcch--HHH
Confidence 11223222222 46899999999965221 10 0 111111 268999999985522 223
Q ss_pred HHHHHhCCCCCcEEEEEeeCcc
Q psy13286 120 DHVISILPHERQILLYSATFPL 141 (351)
Q Consensus 120 ~~~~~~~~~~~~~i~~SaT~~~ 141 (351)
..+ ..+.+.. ++.+|||++.
T Consensus 221 ~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 221 QAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred HHH-HhcCccc-EEEEeeecCC
Confidence 344 3332222 5679999976
No 286
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=75.92 E-value=38 Score=31.59 Aligned_cols=120 Identities=10% Similarity=0.140 Sum_probs=61.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHh-h--CCceEEEEECCcchHHH-----H-HHH-hCCCcEEEEccHHHHHHHh----
Q psy13286 25 KATLIIVPTRELALQTSQICIELAK-H--LNVKVMVTTGGTNLRDD-----I-MRI-YQKVHLIIATPGRILDLMD---- 90 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~-~--~~~~v~~~~~~~~~~~~-----~-~~~-~~~~~Ilv~Tp~~l~~~l~---- 90 (351)
.-..++.|...++......+.+... . ...+-..++|.....+- + ..+ ..+..++..+.+.+...+.
T Consensus 110 FdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~ 189 (445)
T PRK12422 110 FANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIR 189 (445)
T ss_pred ccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHh
Confidence 3356778888887544443322111 1 12355677777553221 1 111 1367888888877644322
Q ss_pred ccCc-----CCCCccEEEEcccccccCcc-hHHHHHHHHHhC-CCCCcEEEEEeeCcchHH
Q psy13286 91 KQVA-----NMDHCKILVLDEADKLLSQD-FKGMLDHVISIL-PHERQILLYSATFPLTVK 144 (351)
Q Consensus 91 ~~~~-----~~~~~~lvViDE~h~~~~~~-~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~ 144 (351)
.+.. .....+++++||+|.+.... ....+..+...+ ....++++.|.+.+..+.
T Consensus 190 ~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 190 SGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred cchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 1110 14678999999999876543 223333333322 233455554444444443
No 287
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=75.74 E-value=12 Score=25.81 Aligned_cols=57 Identities=19% Similarity=0.140 Sum_probs=32.2
Q ss_pred ceEEEEcCCHH-HHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHH
Q psy13286 25 KATLIIVPTRE-LALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGR 84 (351)
Q Consensus 25 ~~~lil~P~~~-L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~ 84 (351)
.+++++||+-- ...-+...+++.++..++.+..-........ ....++|++++|++-
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~~~~~---~~~~~~Dliist~~~ 58 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENGIDVKVEQCKIAEVP---SLLDDADLIVSTTKV 58 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecHHHhh---cccCCCcEEEEcCCc
Confidence 37889998733 3334456666666666654433222221111 123578999999864
No 288
>PRK08727 hypothetical protein; Validated
Probab=75.18 E-value=22 Score=29.82 Aligned_cols=89 Identities=8% Similarity=-0.004 Sum_probs=44.3
Q ss_pred eEEEEECCcchHHH------HHH-HhCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcc-hHHHHHHHHHh
Q psy13286 54 KVMVTTGGTNLRDD------IMR-IYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQD-FKGMLDHVISI 125 (351)
Q Consensus 54 ~v~~~~~~~~~~~~------~~~-~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~-~~~~~~~~~~~ 125 (351)
....++|.....+- ... ...+..+++.+.+.+...+..-...+.+.++||+||+|.+.... ....+..+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~ 121 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNR 121 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHH
Confidence 45677776553222 111 12345666666555543332211235677899999999876533 22233334333
Q ss_pred CC-CCCcEEEEEeeCcch
Q psy13286 126 LP-HERQILLYSATFPLT 142 (351)
Q Consensus 126 ~~-~~~~~i~~SaT~~~~ 142 (351)
.. ...++++.|...+..
T Consensus 122 ~~~~~~~vI~ts~~~p~~ 139 (233)
T PRK08727 122 ARAAGITLLYTARQMPDG 139 (233)
T ss_pred HHHcCCeEEEECCCChhh
Confidence 32 233455444444433
No 289
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=75.10 E-value=17 Score=36.70 Aligned_cols=73 Identities=14% Similarity=0.208 Sum_probs=51.8
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhC----CCcEEEEccHHHHHHHhccCcCCCCc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQ----KVHLIIATPGRILDLMDKQVANMDHC 99 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 99 (351)
.+.+||.+|+..-+.+..+.+++... .++.+..++|+.+..++...+.. ...|+|+|. +. ...+++..+
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~-~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn--IA----ErgItIp~V 281 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLD-SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN--IA----ETSLTIEGI 281 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcC-CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc--hH----hhcccccCc
Confidence 36899999999999998888876432 36889999999887665544432 367999996 22 224467777
Q ss_pred cEEE
Q psy13286 100 KILV 103 (351)
Q Consensus 100 ~lvV 103 (351)
++||
T Consensus 282 ~~VI 285 (819)
T TIGR01970 282 RVVI 285 (819)
T ss_pred eEEE
Confidence 6544
No 290
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=74.92 E-value=4.8 Score=31.00 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=13.5
Q ss_pred CCCccEEEEcccccccC
Q psy13286 96 MDHCKILVLDEADKLLS 112 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~ 112 (351)
..+.+++|+||.+.+..
T Consensus 83 ~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 83 RGGDDLIILDELTRLVR 99 (165)
T ss_pred CCCCEEEEEEcHHHHHH
Confidence 35778999999997653
No 291
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=74.83 E-value=5 Score=40.03 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=23.1
Q ss_pred CCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 95 NMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 95 ~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
.+...++|||||+-++....+...+... .....+++++.
T Consensus 436 ~~~~~~llIvDEasMv~~~~~~~Ll~~~---~~~~~kliLVG 474 (744)
T TIGR02768 436 LLSDKDVLVIDEAGMVGSRQMARVLKEA---EEAGAKVVLVG 474 (744)
T ss_pred cCCCCcEEEEECcccCCHHHHHHHHHHH---HhcCCEEEEEC
Confidence 3567799999999976555444322222 22345555554
No 292
>PRK04296 thymidine kinase; Provisional
Probab=74.69 E-value=22 Score=28.72 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=18.3
Q ss_pred EccHHHHHHHhccCcCCCCccEEEEcccccc
Q psy13286 80 ATPGRILDLMDKQVANMDHCKILVLDEADKL 110 (351)
Q Consensus 80 ~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~ 110 (351)
..++.+.+.+.. .-.++++||+||+|.+
T Consensus 63 ~~~~~~~~~~~~---~~~~~dvviIDEaq~l 90 (190)
T PRK04296 63 SSDTDIFELIEE---EGEKIDCVLIDEAQFL 90 (190)
T ss_pred CChHHHHHHHHh---hCCCCCEEEEEccccC
Confidence 444555555443 2357799999999854
No 293
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=74.68 E-value=13 Score=35.36 Aligned_cols=72 Identities=13% Similarity=0.200 Sum_probs=50.1
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH---HHh-CCCcEEEEccHHHHHHHhccCcCCCCc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM---RIY-QKVHLIIATPGRILDLMDKQVANMDHC 99 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 99 (351)
.+++||.++++.-+..+.+.++. ..++++..++|+.+..+... ... ...+|+|+|. .+ ...+++..+
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~---~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl-~rGiDip~v 437 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITV---VTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VL-GRGVDLLRV 437 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhh---ccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hh-hccCCcccC
Confidence 36899999999998877766643 34788999999876544322 222 3578999996 22 224567888
Q ss_pred cEEEE
Q psy13286 100 KILVL 104 (351)
Q Consensus 100 ~lvVi 104 (351)
++||.
T Consensus 438 ~~VI~ 442 (518)
T PLN00206 438 RQVII 442 (518)
T ss_pred CEEEE
Confidence 88885
No 294
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.62 E-value=3.1 Score=41.03 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=38.1
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCc
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFP 140 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 140 (351)
.+.-++|+|+.|.+.+......+..+++..|.+.+.++.|-+-|
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 34458999999999999988999999999999998888887743
No 295
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=74.55 E-value=44 Score=31.14 Aligned_cols=115 Identities=18% Similarity=0.325 Sum_probs=58.6
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhhCC-ceEEEEECCcchHHH-----H-HHH---hCCCcEEEEccHHHHHHHh----cc
Q psy13286 27 TLIIVPTRELALQTSQICIELAKHLN-VKVMVTTGGTNLRDD-----I-MRI---YQKVHLIIATPGRILDLMD----KQ 92 (351)
Q Consensus 27 ~lil~P~~~L~~q~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-----~-~~~---~~~~~Ilv~Tp~~l~~~l~----~~ 92 (351)
..++.|...++.... .++....+ .+-..++|.....+- + ..+ ..+..++..|.+.+...+. .+
T Consensus 106 nFv~g~~n~~a~~~~---~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~ 182 (440)
T PRK14088 106 NFVVGPGNSFAYHAA---LEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEG 182 (440)
T ss_pred ccccCCchHHHHHHH---HHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcc
Confidence 456688888874443 44443222 455777777553211 1 111 1245788888877644331 11
Q ss_pred Cc-----CC-CCccEEEEcccccccCcc-hHHHHHHHHHhC-CCCCcEEEEEeeCcchHH
Q psy13286 93 VA-----NM-DHCKILVLDEADKLLSQD-FKGMLDHVISIL-PHERQILLYSATFPLTVK 144 (351)
Q Consensus 93 ~~-----~~-~~~~lvViDE~h~~~~~~-~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~ 144 (351)
.. .. ...+++++||+|.+.+.. ....+..++..+ ....++++.|...+..+.
T Consensus 183 ~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~ 242 (440)
T PRK14088 183 KLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_pred cHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHH
Confidence 11 01 257899999999876543 223333333332 223445544444444443
No 296
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=74.30 E-value=6.9 Score=27.15 Aligned_cols=36 Identities=14% Similarity=0.317 Sum_probs=28.7
Q ss_pred CCcEEEEeCc--hHHHHHHHHHHHhcCC-eEEEeccCCC
Q psy13286 193 INQSIIFCNS--TQRVELLAKKITELGY-CCYYIHARMA 228 (351)
Q Consensus 193 ~~~~lIf~~~--~~~~~~l~~~L~~~~~-~~~~~~~~~~ 228 (351)
..++++||.+ +..+...+..|++.|+ .+..+.|++.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 5689999998 4557888999998886 5778888874
No 297
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=73.86 E-value=51 Score=32.51 Aligned_cols=80 Identities=14% Similarity=0.226 Sum_probs=54.1
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHH-hCCCcEEEEccHHHHHHHhccCcCC
Q psy13286 21 KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRI-YQKVHLIIATPGRILDLMDKQVANM 96 (351)
Q Consensus 21 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~ 96 (351)
...+.+++|+++++.-+..+.+.+. ..++++..++|+.+..+. +... .....|+|+|- .+. ..+++
T Consensus 443 ~~~g~~viIf~~t~~~ae~L~~~L~----~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~-----~L~-rGfdl 512 (652)
T PRK05298 443 VAKGERVLVTTLTKRMAEDLTDYLK----ELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN-----LLR-EGLDI 512 (652)
T ss_pred HhCCCEEEEEeCCHHHHHHHHHHHh----hcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeC-----HHh-CCccc
Confidence 3445789999999998877766664 447889999887654322 2222 23577888883 233 34467
Q ss_pred CCccEEEEcccccc
Q psy13286 97 DHCKILVLDEADKL 110 (351)
Q Consensus 97 ~~~~lvViDE~h~~ 110 (351)
..++++|+=|++..
T Consensus 513 p~v~lVii~d~eif 526 (652)
T PRK05298 513 PEVSLVAILDADKE 526 (652)
T ss_pred cCCcEEEEeCCccc
Confidence 88899888777743
No 298
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=73.73 E-value=5.9 Score=27.65 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=30.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 228 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 228 (351)
+.++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 467999999877778888999999999878888874
No 299
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=73.66 E-value=54 Score=27.64 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=60.4
Q ss_pred CCCcEEEEeCc-----------hHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcC----CccEEEEeCcCCCC
Q psy13286 192 QINQSIIFCNS-----------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG----LCRNLVCSDLFTRG 256 (351)
Q Consensus 192 ~~~~~lIf~~~-----------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g----~~~ilv~T~~~~~G 256 (351)
+.+.+||+.+. ...++.+++.|++.|+.+. .+..++..+-.+.++.|.+. ..+.+++. .+++|
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG 84 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVH-VKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHG 84 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCC
Confidence 45667777765 4589999999999999875 56678888888888888762 35555555 67788
Q ss_pred CCCCCCCEEEEecC-CCChhhHhhhc
Q psy13286 257 IDVQAVNVVINFDF-PKMAETYLHRI 281 (351)
Q Consensus 257 ~di~~~~~Vi~~~~-p~s~~~~~q~~ 281 (351)
. .+.|+-.|. +.+.......+
T Consensus 85 ~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 85 E----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred C----CCeEEEecCCEEEHHHHHHhc
Confidence 4 266766665 55666666666
No 300
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=73.59 E-value=8.5 Score=27.17 Aligned_cols=38 Identities=18% Similarity=0.433 Sum_probs=30.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCC
Q psy13286 191 LQINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 228 (351)
Q Consensus 191 ~~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 228 (351)
.+..+++|||.+=..+...+..|...|+. +..+.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 45568999998877777788899888985 778888764
No 301
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=73.09 E-value=22 Score=28.76 Aligned_cols=75 Identities=16% Similarity=0.269 Sum_probs=44.8
Q ss_pred hCCceEEEEECCcchHHHHHHHhC-----CCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHH
Q psy13286 50 HLNVKVMVTTGGTNLRDDIMRIYQ-----KVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVIS 124 (351)
Q Consensus 50 ~~~~~v~~~~~~~~~~~~~~~~~~-----~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~ 124 (351)
..+.++..+......+.....+.+ ...+.|-.+..+.+.+....... .+++|.||||+ +++...-..+..+..
T Consensus 30 ~~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQ-F~~~~~v~~l~~lad 107 (201)
T COG1435 30 EAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQ-FFDEELVYVLNELAD 107 (201)
T ss_pred HcCCeEEEEecccccccccceeeeccCCcccceecCChHHHHHHHHhcccCC-CcCEEEEehhH-hCCHHHHHHHHHHHh
Confidence 346777777766554433222211 24567777878877766543322 27899999999 555544555566655
Q ss_pred hC
Q psy13286 125 IL 126 (351)
Q Consensus 125 ~~ 126 (351)
.+
T Consensus 108 ~l 109 (201)
T COG1435 108 RL 109 (201)
T ss_pred hc
Confidence 53
No 302
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=72.97 E-value=16 Score=35.07 Aligned_cols=111 Identities=12% Similarity=0.123 Sum_probs=56.7
Q ss_pred chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhh-CCce-EEEEECCcchHHHHHHHhCCCcEEEEccHHH--
Q psy13286 10 QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKH-LNVK-VMVTTGGTNLRDDIMRIYQKVHLIIATPGRI-- 85 (351)
Q Consensus 10 ~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~-v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-- 85 (351)
++|+++.++..-. +-++.|+++-+..++-+.+++..-+.. .+-+ +.... +.-|.+.-|..=
T Consensus 219 ~VpiIsllL~s~~-gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k--------------~~tI~~s~pg~Kst 283 (668)
T PHA03372 219 IIPIISFLLKNII-GISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENK--------------DNVISIDHRGAKST 283 (668)
T ss_pred HHHHHHHHHHhhc-CceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeec--------------CcEEEEecCCCcce
Confidence 6677776666444 378888888777666555443322211 1111 11111 112333333211
Q ss_pred ---HHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHh-CCCCCcEEEEEeeC
Q psy13286 86 ---LDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISI-LPHERQILLYSATF 139 (351)
Q Consensus 86 ---~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~~SaT~ 139 (351)
..-...+...-..++++++||||-+....+. .++-. ..+.++++..|.|-
T Consensus 284 ~~fasc~n~NsiRGQ~fnll~VDEA~FI~~~a~~----tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 284 ALFASCYNTNSIRGQNFHLLLVDEAHFIKKDAFN----TILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred eeehhhccCccccCCCCCEEEEehhhccCHHHHH----HhhhhhcccCceEEEEeCCC
Confidence 0101123344678999999999954433322 22222 34567788888773
No 303
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=72.92 E-value=8.5 Score=33.45 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=15.3
Q ss_pred CCCccEEEEcccccccCcc
Q psy13286 96 MDHCKILVLDEADKLLSQD 114 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~ 114 (351)
.-.++++||||+|.++.-.
T Consensus 143 ~~~vrmLIIDE~H~lLaGs 161 (302)
T PF05621_consen 143 RLGVRMLIIDEFHNLLAGS 161 (302)
T ss_pred HcCCcEEEeechHHHhccc
Confidence 3577899999999987644
No 304
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=72.91 E-value=44 Score=26.29 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=43.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcC-----CeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-----cCCCC-CCCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELG-----YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD-----LFTRG-IDVQA 261 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~G-~di~~ 261 (351)
..++++.+++...+......+.... .....+++... ......+.++...++++|. ....+ .+...
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~ 129 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSN 129 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhH
Confidence 4689999999988888888887654 33444444333 2334455566668898883 22222 34445
Q ss_pred CCEEEEe
Q psy13286 262 VNVVINF 268 (351)
Q Consensus 262 ~~~Vi~~ 268 (351)
...+|.-
T Consensus 130 ~~~iIiD 136 (201)
T smart00487 130 VDLVILD 136 (201)
T ss_pred CCEEEEE
Confidence 5555543
No 305
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=72.69 E-value=7.2 Score=28.14 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=30.8
Q ss_pred CCCcEEEEeCch--HHHHHHHHHHHhcCCeEEEeccCCCH
Q psy13286 192 QINQSIIFCNST--QRVELLAKKITELGYCCYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~--~~~~~l~~~L~~~~~~~~~~~~~~~~ 229 (351)
+..++++||.+- ..+..++..|...|+.+..+.|++..
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~~ 102 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLDW 102 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHHH
Confidence 356799999865 36888999999999998889988743
No 306
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=72.69 E-value=23 Score=23.45 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=34.6
Q ss_pred eEEEEcCCH-HHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccH
Q psy13286 26 ATLIIVPTR-ELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPG 83 (351)
Q Consensus 26 ~~lil~P~~-~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~ 83 (351)
+++++||+- .-..-....+++..+..++....-..+.... ......+++++|++
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~dliitt~~ 55 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSEV----IDLADADLIISTVP 55 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCCeEEEEEcccchh----hhcCCccEEEECCc
Confidence 468888877 5555566788888777776544333333211 22357899999996
No 307
>KOG0389|consensus
Probab=72.56 E-value=29 Score=34.36 Aligned_cols=72 Identities=10% Similarity=0.026 Sum_probs=50.3
Q ss_pred HHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc--CCeEEEeccCCCHHHHHHHHHHhhcC--CccEEEEeCcCCC
Q psy13286 181 VHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSG--LCRNLVCSDLFTR 255 (351)
Q Consensus 181 ~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~ilv~T~~~~~ 255 (351)
+..+..+.....+++=||.|++.---.++.+ +.+. .+.+..+|| ++.+|.++...+.++ .++|||+|-.+..
T Consensus 436 IaFlayLkq~g~~gpHLVVvPsSTleNWlrE-f~kwCPsl~Ve~YyG--Sq~ER~~lR~~i~~~~~~ydVllTTY~la~ 511 (941)
T KOG0389|consen 436 IAFLAYLKQIGNPGPHLVVVPSSTLENWLRE-FAKWCPSLKVEPYYG--SQDERRELRERIKKNKDDYDVLLTTYNLAA 511 (941)
T ss_pred HHHHHHHHHcCCCCCcEEEecchhHHHHHHH-HHHhCCceEEEeccC--cHHHHHHHHHHHhccCCCccEEEEEeeccc
Confidence 3444555556668899999997654433332 2332 467889999 568999999988876 7899999964444
No 308
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=72.30 E-value=9.7 Score=35.27 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=33.4
Q ss_pred ccEEEEcccccccC-cchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHh
Q psy13286 99 CKILVLDEADKLLS-QDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKH 150 (351)
Q Consensus 99 ~~lvViDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~ 150 (351)
.++||||.+-+... ...-.++..+.....+..-++.++|+........+..+
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 48999999965433 23444556666665556667888888766555555543
No 309
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=72.22 E-value=6.2 Score=36.10 Aligned_cols=119 Identities=11% Similarity=0.157 Sum_probs=60.8
Q ss_pred CCceEEEEcCCHH-HHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhC-CCcEEEEcc-HHHHHHHhccCcCCCCc
Q psy13286 23 TSKATLIIVPTRE-LALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQ-KVHLIIATP-GRILDLMDKQVANMDHC 99 (351)
Q Consensus 23 ~~~~~lil~P~~~-L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~Ilv~Tp-~~l~~~l~~~~~~~~~~ 99 (351)
.+.+++++-|+.. |-.-+...+.+.....++....-....+. .+ .... +..|++..- +...++ + ....+
T Consensus 31 ~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i-~~~~~g~~i~f~g~~d~~~~i-k----~~~~~ 102 (396)
T TIGR01547 31 KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI-KILNTGKKFIFKGLNDKPNKL-K----SGAGI 102 (396)
T ss_pred CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE-EecCCCeEEEeecccCChhHh-h----Cccee
Confidence 3478999999887 66666677776666655432211111110 00 0112 344555443 222221 1 12346
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc
Q psy13286 100 KILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL 151 (351)
Q Consensus 100 ~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 151 (351)
+++.+||+..+....+...+..+ +. +.....+++|.+|......+.+.+.
T Consensus 103 ~~~~idEa~~~~~~~~~~l~~rl-r~-~~~~~~i~~t~NP~~~~~w~~~~f~ 152 (396)
T TIGR01547 103 AIIWFEEASQLTFEDIKELIPRL-RE-TGGKKFIIFSSNPESPLHWVKKRFI 152 (396)
T ss_pred eeehhhhhhhcCHHHHHHHHHHh-hc-cCCccEEEEEcCcCCCccHHHHHHH
Confidence 89999999987555444444332 21 1222247788887654333344433
No 310
>PRK13767 ATP-dependent helicase; Provisional
Probab=72.12 E-value=24 Score=36.16 Aligned_cols=77 Identities=10% Similarity=0.089 Sum_probs=53.3
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhh--CCceEEEEECCcchHHHH---HHHh-CCCcEEEEccHHHHHHHhccCcCCC
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKH--LNVKVMVTTGGTNLRDDI---MRIY-QKVHLIIATPGRILDLMDKQVANMD 97 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~ 97 (351)
++++||.|+|+..++.++..+++.... .+..+...+|+.+..... ..+. ...+|+|||.. + . ..+++.
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~-L-e----~GIDip 357 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTS-L-E----LGIDIG 357 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-H-H----hcCCCC
Confidence 468999999999999999888775432 346788888887644332 1222 35789999963 2 2 145678
Q ss_pred CccEEEEcc
Q psy13286 98 HCKILVLDE 106 (351)
Q Consensus 98 ~~~lvViDE 106 (351)
.+++||.-.
T Consensus 358 ~Vd~VI~~~ 366 (876)
T PRK13767 358 YIDLVVLLG 366 (876)
T ss_pred CCcEEEEeC
Confidence 888888644
No 311
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=71.81 E-value=6.1 Score=32.35 Aligned_cols=24 Identities=17% Similarity=0.479 Sum_probs=16.0
Q ss_pred CcEEEEc-cHHHHHHHhccCcCCCCccEEEEc
Q psy13286 75 VHLIIAT-PGRILDLMDKQVANMDHCKILVLD 105 (351)
Q Consensus 75 ~~Ilv~T-p~~l~~~l~~~~~~~~~~~lvViD 105 (351)
++++|+- |+.+... +..+|+++||
T Consensus 98 vEfvvg~~~e~~~~~-------~~~iDF~vVD 122 (218)
T PF07279_consen 98 VEFVVGEAPEEVMPG-------LKGIDFVVVD 122 (218)
T ss_pred ceEEecCCHHHHHhh-------ccCCCEEEEe
Confidence 4667765 4445432 5788999998
No 312
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=71.35 E-value=19 Score=34.52 Aligned_cols=123 Identities=13% Similarity=0.147 Sum_probs=66.1
Q ss_pred cEEEEEeeC--cchHHHHHHHhcCCCeEEeeccccccCCceEEEEEcCcc---cHHHHHHHHHhhCCCCcEEEEeCchHH
Q psy13286 131 QILLYSATF--PLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQER---QKVHCLNTLFSKLQINQSIIFCNSTQR 205 (351)
Q Consensus 131 ~~i~~SaT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~~~~~~~lIf~~~~~~ 205 (351)
-.++++++. +..+.++.+.++.+ .....+-......+........+ ++...+..-++....+.+.|.|++..+
T Consensus 590 e~v~l~~syrSt~eI~efan~~l~d--~~~~~p~~rsge~p~~i~~~~ne~l~qr~~~ii~~mkk~~~etiaVi~kt~~d 667 (747)
T COG3973 590 EYVGLIASYRSTAEIDEFANSLLPD--RFRIHPLTRSGEKPAVIMSVANEELVQRNPDIIPRMKKRGSETIAVICKTDHD 667 (747)
T ss_pred hhhhhhhhhcChHHHHHHHHHhccC--CCccchhhcCCCCceeeeccchHHHHHhhHHHHHHHHhcCCCceEEECCcHHH
Confidence 345555554 33455667766653 11111112222233333333333 333344444455566788999999999
Q ss_pred HHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCC
Q psy13286 206 VELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFP 271 (351)
Q Consensus 206 ~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p 271 (351)
|..+-..|++.. +.......-+.|..|..- --.....|+.+ +|||.+|+.
T Consensus 668 ~~~~~d~lre~~----------~~r~I~k~nq~f~~~~~v---ipvy~aKGlEF---D~viv~d~s 717 (747)
T COG3973 668 CKAVMDSLREKD----------SQRTIAKENQRFHHGSDV---IPVYDAKGLEF---DHVIVVDPS 717 (747)
T ss_pred HHHHHHHHhhcc----------hhhHHHhhcccccCCceE---EEeeeccccee---eeEEEecch
Confidence 999999997542 111112222344444432 23455677776 789988873
No 313
>PRK06921 hypothetical protein; Provisional
Probab=71.08 E-value=11 Score=32.39 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=11.5
Q ss_pred CCCccEEEEccccc
Q psy13286 96 MDHCKILVLDEADK 109 (351)
Q Consensus 96 ~~~~~lvViDE~h~ 109 (351)
+...++||+||+|.
T Consensus 175 ~~~~dlLiIDDl~~ 188 (266)
T PRK06921 175 MKKVEVLFIDDLFK 188 (266)
T ss_pred hcCCCEEEEecccc
Confidence 35779999999964
No 314
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=70.81 E-value=16 Score=25.25 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=30.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCC-eEEEeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 228 (351)
+..+++++|.+-..+...+..|+..|+ ++..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 456899999988899999999999987 4777888763
No 315
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=70.71 E-value=18 Score=32.62 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=47.6
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhccCcCCCCccEEE
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKILV 103 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvV 103 (351)
++++||+++|+.-++.++..+++.. .+..+..++|..+....... ...+|+|+|. +. .. .+++... .+|
T Consensus 272 ~~k~LIf~nt~~~~~~l~~~L~~~~--~~~~~~~l~g~~~~~~R~~~--~~~~iLVaTd--v~---~r-GiDi~~~-~vi 340 (357)
T TIGR03158 272 GERGAIILDSLDEVNRLSDLLQQQG--LGDDIGRITGFAPKKDRERA--MQFDILLGTS--TV---DV-GVDFKRD-WLI 340 (357)
T ss_pred CCeEEEEECCHHHHHHHHHHHhhhC--CCceEEeeecCCCHHHHHHh--ccCCEEEEec--HH---hc-ccCCCCc-eEE
Confidence 4689999999999999998887642 24567778887765443222 3578999997 22 22 3345443 566
Q ss_pred Ec
Q psy13286 104 LD 105 (351)
Q Consensus 104 iD 105 (351)
+|
T Consensus 341 ~~ 342 (357)
T TIGR03158 341 FS 342 (357)
T ss_pred EC
Confidence 64
No 316
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=70.45 E-value=12 Score=33.49 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=48.9
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH-------HHHHh-CCCcEEEEccHHHHHHHhccCc
Q psy13286 23 TSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD-------IMRIY-QKVHLIIATPGRILDLMDKQVA 94 (351)
Q Consensus 23 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~ 94 (351)
.++++||+++|+.-+..+++.+++... +..+..++|+.+..+. +.... ....|+|+|. .+ . . .+
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~--~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~-~~-~---~-Gi 292 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAP--EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ-VI-E---A-SL 292 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcC--CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc-ch-h---c-ee
Confidence 347999999999999998888876532 3468899998754332 12222 3467999996 22 1 1 33
Q ss_pred CCCCccEEEEcc
Q psy13286 95 NMDHCKILVLDE 106 (351)
Q Consensus 95 ~~~~~~lvViDE 106 (351)
++ .++++|.+.
T Consensus 293 Di-~~~~vi~~~ 303 (358)
T TIGR01587 293 DI-SADVMITEL 303 (358)
T ss_pred cc-CCCEEEEcC
Confidence 44 356666553
No 317
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=70.44 E-value=23 Score=38.26 Aligned_cols=73 Identities=8% Similarity=0.032 Sum_probs=54.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh----------------cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc----
Q psy13286 193 INQSIIFCNSTQRVELLAKKITE----------------LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL---- 252 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~----------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~---- 252 (351)
+.++|+.+++++-+..+.+.|+. .++.+...||+.+..+|.+.++ ...+|||+|+-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~----~ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR----NPPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc----CCCCEEEecHHHHHH
Confidence 45789999999999888877652 2578889999999988776443 56799999972
Q ss_pred -CCC-C-CCCCCCCEEEEec
Q psy13286 253 -FTR-G-IDVQAVNVVINFD 269 (351)
Q Consensus 253 -~~~-G-~di~~~~~Vi~~~ 269 (351)
+.. + ..+.++++||.-.
T Consensus 113 LLtsk~r~~L~~Vr~VIVDE 132 (1490)
T PRK09751 113 MLTSRARETLRGVETVIIDE 132 (1490)
T ss_pred HHhhhhhhhhccCCEEEEec
Confidence 222 2 3577888888644
No 318
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=69.84 E-value=4.4 Score=35.42 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=55.5
Q ss_pred CcccccCCcc-hhhhc---ccC-cCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPTQ-FLYLN---KLT-PAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~~-l~~l~---~l~-~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|.|..|||- ..++. .+. .......++|++++|+..+.++.+.+.+.+....... ..............
T Consensus 17 lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~------~~~~~~~~~~~~~~ 90 (315)
T PF00580_consen 17 LVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQES------SDNERLRRQLSNID 90 (315)
T ss_dssp EEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCC------TT-HHHHHHHHHCT
T ss_pred EEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccc------cccccccccccccc
Confidence 4677888872 22222 222 2223347899999999999999999988765432100 00001111112245
Q ss_pred cEEEEccHHHHH-HHhccCcCC-CCccEEEEcccc
Q psy13286 76 HLIIATPGRILD-LMDKQVANM-DHCKILVLDEAD 108 (351)
Q Consensus 76 ~Ilv~Tp~~l~~-~l~~~~~~~-~~~~lvViDE~h 108 (351)
.+.|+|-..+.. +++...... -.-++-++|+..
T Consensus 91 ~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 91 RIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp TSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred hheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 688999998855 333322211 122456777766
No 319
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=69.79 E-value=37 Score=25.74 Aligned_cols=81 Identities=15% Similarity=0.122 Sum_probs=39.6
Q ss_pred HHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCC
Q psy13286 181 VHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGID 258 (351)
Q Consensus 181 ~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d 258 (351)
...+..++.+ ..+.+++|+|++.++++.+-+.|=...-....-|+-.... ......|+|+++... -.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~ 83 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NP 83 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS-----
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CC
Confidence 4555565543 3467899999999999999999844433333334432211 012347999887633 12
Q ss_pred CCCCCEEEEecCCC
Q psy13286 259 VQAVNVVINFDFPK 272 (351)
Q Consensus 259 i~~~~~Vi~~~~p~ 272 (351)
.+..+++||.+...
T Consensus 84 ~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 84 NNHADVLINLSGEV 97 (137)
T ss_dssp -S--SEEEE--SS-
T ss_pred CCCCCEEEECCCCC
Confidence 22357899887653
No 320
>KOG1513|consensus
Probab=69.77 E-value=9.7 Score=37.54 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=62.7
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcch--HHHHHHHhCCCcEEEEccHHHHHHHh--ccC---
Q psy13286 21 KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNL--RDDIMRIYQKVHLIIATPGRILDLMD--KQV--- 93 (351)
Q Consensus 21 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~Ilv~Tp~~l~~~l~--~~~--- 93 (351)
..+++++|-+.-+..|--+..+.++..+. .++.|..+.--.-. ..+. .-.-.-.|+++|+..|.---. .+.
T Consensus 315 LkGRKrAlW~SVSsDLKfDAERDL~DigA-~~I~V~alnK~KYakIss~e-n~n~krGViFaTYtaLIGEs~~~~~kyrt 392 (1300)
T KOG1513|consen 315 LKGRKRALWFSVSSDLKFDAERDLRDIGA-TGIAVHALNKFKYAKISSKE-NTNTKRGVIFATYTALIGESQGKGGKYRT 392 (1300)
T ss_pred hcccceeEEEEeccccccchhhchhhcCC-CCccceehhhcccccccccc-cCCccceeEEEeeHhhhhhccccCchHHH
Confidence 34457899999888887666666655532 24554433211100 0000 000024589999988722110 000
Q ss_pred --------cCCCCccEEEEcccccccCc---------chHHHHHHHHHhCCCCCcEEEEEeeC
Q psy13286 94 --------ANMDHCKILVLDEADKLLSQ---------DFKGMLDHVISILPHERQILLYSATF 139 (351)
Q Consensus 94 --------~~~~~~~lvViDE~h~~~~~---------~~~~~~~~~~~~~~~~~~~i~~SaT~ 139 (351)
.--..=++||+||||.-.+- .-+..+..+...+| +.+++..|||-
T Consensus 393 R~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 393 RFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred HHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 00112258999999976541 13344556666664 45689999994
No 321
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=69.76 E-value=6.9 Score=28.90 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=32.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCC--eEEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGY--CCYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~ 229 (351)
+..++++||.+-..+...+..|+..|+ ++..+.|++..
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~ 110 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKA 110 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHH
Confidence 356799999987888899999999999 68899998754
No 322
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=69.73 E-value=9 Score=26.86 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=30.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCC-eEEEeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 228 (351)
+..++++||++-..+...+..|.+.|+ ++..+.|++.
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 346899999998888889999988877 5777888764
No 323
>PRK06620 hypothetical protein; Validated
Probab=68.87 E-value=37 Score=28.03 Aligned_cols=83 Identities=5% Similarity=-0.038 Sum_probs=42.6
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHHHHhhCC-ceEEEEECCcchHHH--HHHHhCCCcEEEEccHHHHHHHhccCcCCCC
Q psy13286 22 ITSKATLIIVPTRELALQTSQICIELAKHLN-VKVMVTTGGTNLRDD--IMRIYQKVHLIIATPGRILDLMDKQVANMDH 98 (351)
Q Consensus 22 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~v~~~~~~~~~~~~--~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 98 (351)
....--.|+.|+...+.+....+.+-..... .+...++|.....+. .....+.....+.+....... ....
T Consensus 12 ~~tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~------~~~~ 85 (214)
T PRK06620 12 KYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEE------ILEK 85 (214)
T ss_pred CCCchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchh------HHhc
Confidence 3345678999988888555554432100111 145677776553222 222222333344432222111 1245
Q ss_pred ccEEEEcccccc
Q psy13286 99 CKILVLDEADKL 110 (351)
Q Consensus 99 ~~lvViDE~h~~ 110 (351)
.+++++||+|.+
T Consensus 86 ~d~lliDdi~~~ 97 (214)
T PRK06620 86 YNAFIIEDIENW 97 (214)
T ss_pred CCEEEEeccccc
Confidence 589999999954
No 324
>PF13173 AAA_14: AAA domain
Probab=68.75 E-value=8.6 Score=28.65 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=24.7
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEee
Q psy13286 98 HCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSAT 138 (351)
Q Consensus 98 ~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 138 (351)
.-.++++||+|.+. ++...++.+.... .+.+++ +|++
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~ii-~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKII-LTGS 97 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceEE-EEcc
Confidence 45689999999874 4667777777755 344444 4444
No 325
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=68.72 E-value=22 Score=35.62 Aligned_cols=62 Identities=6% Similarity=0.110 Sum_probs=47.0
Q ss_pred HHHHHhhCCCCcEEEEeCchHHHHHHHHHHHh----cCCeEEEeccCCC-HHHHHHHHHHhhcCCccEEEEeC
Q psy13286 184 LNTLFSKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMA-QAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 184 l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~-~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
+..++....+..++|.++++.-|.+-++.+.. .|+.+..+.|+++ ..+|.... ..+|+++|.
T Consensus 110 lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y------~~dIvygT~ 176 (790)
T PRK09200 110 MPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY------EADIIYTTN 176 (790)
T ss_pred HHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc------CCCEEEECC
Confidence 34445666788999999999888877666644 5899999999999 77766432 268999985
No 326
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=68.36 E-value=28 Score=35.21 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=52.4
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhC----CCcEEEEccHHHHHHHhccCcCCCCc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQ----KVHLIIATPGRILDLMDKQVANMDHC 99 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 99 (351)
.+.+||.+|++.-+.+..+.+++... .++.+..++|+.+..++...+.. ...|+|+|. +.. ..+++..+
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~-~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn--IAE----rsLtIp~V 284 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVA-SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN--IAE----TSLTIEGI 284 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhcc-CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc--hHH----hcccccCc
Confidence 36899999999999999988876322 36889999999887655444432 367999997 322 24567788
Q ss_pred cEEE
Q psy13286 100 KILV 103 (351)
Q Consensus 100 ~lvV 103 (351)
++||
T Consensus 285 ~~VI 288 (812)
T PRK11664 285 RLVV 288 (812)
T ss_pred eEEE
Confidence 7555
No 327
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=68.19 E-value=47 Score=30.44 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=71.1
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH-----H----HHHhCCCcEEEEccHHHHHHHh-
Q psy13286 21 KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD-----I----MRIYQKVHLIIATPGRILDLMD- 90 (351)
Q Consensus 21 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~----~~~~~~~~Ilv~Tp~~l~~~l~- 90 (351)
..+..--.|+.|+..++......+.+.... ..+...++|+....+- + ........++..|.+.+...+-
T Consensus 82 ~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~ 160 (408)
T COG0593 82 PKYTFDNFVVGPSNRLAYAAAKAVAENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVK 160 (408)
T ss_pred CCCchhheeeCCchHHHHHHHHHHHhccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHH
Confidence 344467889999999986666554332211 3667778887653211 1 1112245688888888743221
Q ss_pred ---ccC-----cCCCCccEEEEcccccccCcc-hHHHHHHHHHhCCCCC-cEEEEEeeCcchHH
Q psy13286 91 ---KQV-----ANMDHCKILVLDEADKLLSQD-FKGMLDHVISILPHER-QILLYSATFPLTVK 144 (351)
Q Consensus 91 ---~~~-----~~~~~~~lvViDE~h~~~~~~-~~~~~~~~~~~~~~~~-~~i~~SaT~~~~~~ 144 (351)
.+. ... ++++++||+++.+..+. ..+.+..+...+.... |+++.|..+|..+.
T Consensus 161 a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 161 ALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred HHHhhhHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 111 124 88999999999877653 3444555555544333 66666655665443
No 328
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=68.14 E-value=31 Score=35.01 Aligned_cols=66 Identities=8% Similarity=0.013 Sum_probs=51.5
Q ss_pred HHHHHHHHhhCCCCcEEEEeCchHHHH----HHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc
Q psy13286 181 VHCLNTLFSKLQINQSIIFCNSTQRVE----LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL 252 (351)
Q Consensus 181 ~~~l~~~l~~~~~~~~lIf~~~~~~~~----~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 252 (351)
...+...+....+.++.|.+++.--|. .+...+...|+.+.++.++++..+|...+. .+|+.+|..
T Consensus 111 vA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~ 180 (913)
T PRK13103 111 VGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNN 180 (913)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEccc
Confidence 455566677888889999999876555 455555556999999999999999988776 788888865
No 329
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=68.01 E-value=28 Score=35.44 Aligned_cols=55 Identities=5% Similarity=0.042 Sum_probs=43.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL 252 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 252 (351)
.+.+++|.++++.-|...++.+... |+.+..+.|+++...+...+ ..+|+++|+.
T Consensus 134 ~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTPg 192 (970)
T PRK12899 134 TGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTAS 192 (970)
T ss_pred hcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECCC
Confidence 3456889999999999988888654 68889999999988765443 3789999974
No 330
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=67.63 E-value=13 Score=34.37 Aligned_cols=47 Identities=15% Similarity=0.319 Sum_probs=30.9
Q ss_pred CCCCccEE-EEcccccccCcc---hHHHHHHHHHhCC-CCCcEEEEEeeCcc
Q psy13286 95 NMDHCKIL-VLDEADKLLSQD---FKGMLDHVISILP-HERQILLYSATFPL 141 (351)
Q Consensus 95 ~~~~~~lv-ViDE~h~~~~~~---~~~~~~~~~~~~~-~~~~~i~~SaT~~~ 141 (351)
++.+..+| +|||||.+.+.. +...+..+.+... +..-++++|.++.+
T Consensus 251 D~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~P~D 302 (502)
T PF05872_consen 251 DLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQNPTD 302 (502)
T ss_pred CCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCCCCC
Confidence 46677775 599999888765 3344455555543 45668888888643
No 331
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=67.57 E-value=45 Score=24.28 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=40.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcC---CeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELG---YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL 252 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 252 (351)
...+++++|++...+....+.+.... ..+..+++........ ........++++|..
T Consensus 29 ~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~ 88 (144)
T cd00046 29 KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPG 88 (144)
T ss_pred cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECcH
Confidence 56789999999999988887776654 6777777776554433 222355677888753
No 332
>KOG0333|consensus
Probab=67.24 E-value=13 Score=34.78 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=47.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHHhC-CCcEEEEccHHHHHHHhccCcCCCCcc
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRIYQ-KVHLIIATPGRILDLMDKQVANMDHCK 100 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 100 (351)
+.++|.+.++.=|.-+++.+. ..++++..+||+.+..+.- ..+.. ..+|+|||--.- ..++..+++
T Consensus 518 ppiIIFvN~kk~~d~lAk~Le----K~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAg------RGIDIpnVS 587 (673)
T KOG0333|consen 518 PPIIIFVNTKKGADALAKILE----KAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAG------RGIDIPNVS 587 (673)
T ss_pred CCEEEEEechhhHHHHHHHHh----hccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccc------cCCCCCccc
Confidence 789999999888765555554 4479999999999865543 33333 689999995322 234566766
Q ss_pred EEE
Q psy13286 101 ILV 103 (351)
Q Consensus 101 lvV 103 (351)
+||
T Consensus 588 lVi 590 (673)
T KOG0333|consen 588 LVI 590 (673)
T ss_pred eee
Confidence 554
No 333
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=67.01 E-value=11 Score=26.65 Aligned_cols=38 Identities=13% Similarity=0.332 Sum_probs=31.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~ 229 (351)
+..++++||.+-..+...+..|.+.|+. +..+.|++..
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 3568999999988888899999998884 7888888754
No 334
>PRK06835 DNA replication protein DnaC; Validated
Probab=66.92 E-value=46 Score=29.65 Aligned_cols=109 Identities=12% Similarity=0.216 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHhhC--CceEEEEECCcchHHH------H-HHHhCCCcEEEEccHHHHHHHhccC-----------
Q psy13286 34 RELALQTSQICIELAKHL--NVKVMVTTGGTNLRDD------I-MRIYQKVHLIIATPGRILDLMDKQV----------- 93 (351)
Q Consensus 34 ~~L~~q~~~~~~~~~~~~--~~~v~~~~~~~~~~~~------~-~~~~~~~~Ilv~Tp~~l~~~l~~~~----------- 93 (351)
++-+.+....++.|...+ .-....++|.....+- . ..+..+..|+..|...+...+....
T Consensus 162 ~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~ 241 (329)
T PRK06835 162 RKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVY 241 (329)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHH
Confidence 444555566566565532 1256677776543221 1 1123467888888877766553211
Q ss_pred cCCCCccEEEEcccccccCcchH-HHHHHHHHhC-CCCCcEEEEEeeCcch
Q psy13286 94 ANMDHCKILVLDEADKLLSQDFK-GMLDHVISIL-PHERQILLYSATFPLT 142 (351)
Q Consensus 94 ~~~~~~~lvViDE~h~~~~~~~~-~~~~~~~~~~-~~~~~~i~~SaT~~~~ 142 (351)
..+..++++|+|+.+......+. ..+..++... .....+++.|.-.+..
T Consensus 242 ~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~e 292 (329)
T PRK06835 242 DLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEE 292 (329)
T ss_pred HHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHH
Confidence 12468899999999866444333 3344444433 2233455444433333
No 335
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=66.91 E-value=11 Score=28.22 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=11.8
Q ss_pred CCccEEEEcccccc
Q psy13286 97 DHCKILVLDEADKL 110 (351)
Q Consensus 97 ~~~~lvViDE~h~~ 110 (351)
....++|+||++.+
T Consensus 83 ~~~~~lilDe~~~~ 96 (151)
T cd00009 83 AKPGVLFIDEIDSL 96 (151)
T ss_pred CCCeEEEEeChhhh
Confidence 45679999999987
No 336
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=66.91 E-value=5.6 Score=39.28 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=25.3
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
.+++++||||+|+|....+.. +.+++...+....+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~NA-LLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNA-MLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHHHH-HHHHHHhcCCCeEEEEEE
Confidence 467899999999887665544 344555555555455444
No 337
>PHA02653 RNA helicase NPH-II; Provisional
Probab=66.88 E-value=27 Score=34.50 Aligned_cols=72 Identities=10% Similarity=0.172 Sum_probs=50.2
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH-HHHH-h-CCCcEEEEccHHHHHHHhccCcCCCCcc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD-IMRI-Y-QKVHLIIATPGRILDLMDKQVANMDHCK 100 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~-~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 100 (351)
++.+||.+|++.-+....+.+++.. .++.+..++|+.+..++ .... . ....|+|+|. + . ...+++..++
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~--~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATd--I---A-ERGIDIp~V~ 466 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRL--PIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTP--Y---L-ESSVTIRNAT 466 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhc--CCceEEeccCCcCHHHHHHHHHhccCceeEEeccC--h---h-hccccccCee
Confidence 3689999999998888777775543 25889999998876533 2343 2 3478999996 2 2 2245678887
Q ss_pred EEE
Q psy13286 101 ILV 103 (351)
Q Consensus 101 lvV 103 (351)
+||
T Consensus 467 ~VI 469 (675)
T PHA02653 467 HVY 469 (675)
T ss_pred EEE
Confidence 665
No 338
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=66.80 E-value=9.8 Score=39.10 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=17.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh
Q psy13286 193 INQSIIFCNSTQRVELLAKKITE 215 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~ 215 (351)
...++|.+++...+..+-..++.
T Consensus 556 ~~~~lVLaptn~~v~~LN~~iR~ 578 (988)
T PRK13889 556 DRSRIILTHTNDEVRALNEAARE 578 (988)
T ss_pred cccEEEEcCCcccHHHHHHHHHH
Confidence 35789999998888777666654
No 339
>PHA02533 17 large terminase protein; Provisional
Probab=66.78 E-value=12 Score=35.82 Aligned_cols=78 Identities=9% Similarity=0.052 Sum_probs=45.1
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCc--eEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhccCcCCCCccE
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNV--KVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKI 101 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~l 101 (351)
+..+++++|+..-+..+++.++.+....+. +....... .....+.+++.|.+.|... + ...-...++
T Consensus 104 ~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~~i~~~~----~~~I~l~NGS~I~~lss~~--~-----t~rG~~~~~ 172 (534)
T PHA02533 104 DKNVGILAHKASMAAEVLDRTKQAIELLPDFLQPGIVEWN----KGSIELENGSKIGAYASSP--D-----AVRGNSFAM 172 (534)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhcceeecC----ccEEEeCCCCEEEEEeCCC--C-----ccCCCCCce
Confidence 469999999999999999988877664421 10000000 0111123456665544321 1 112346678
Q ss_pred EEEcccccccC
Q psy13286 102 LVLDEADKLLS 112 (351)
Q Consensus 102 vViDE~h~~~~ 112 (351)
+++||+|.+.+
T Consensus 173 liiDE~a~~~~ 183 (534)
T PHA02533 173 IYIDECAFIPN 183 (534)
T ss_pred EEEeccccCCC
Confidence 99999996644
No 340
>PRK07952 DNA replication protein DnaC; Validated
Probab=66.68 E-value=16 Score=30.98 Aligned_cols=45 Identities=11% Similarity=0.284 Sum_probs=25.7
Q ss_pred CCCccEEEEcccccccCcchHH-HHHHHHHh-CCCCCcEEEEEeeCc
Q psy13286 96 MDHCKILVLDEADKLLSQDFKG-MLDHVISI-LPHERQILLYSATFP 140 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~-~~~~~~~~-~~~~~~~i~~SaT~~ 140 (351)
+...+++||||++......+.. .+..++.. +.....+++.|--.+
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~ 206 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNM 206 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCH
Confidence 4578999999999765544443 33334443 223344555554433
No 341
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=66.65 E-value=32 Score=31.90 Aligned_cols=68 Identities=16% Similarity=0.326 Sum_probs=36.8
Q ss_pred EEccHHHHHHHhccCcCCCCccEEEEcccccccCc-chHHHHHHHHHhC-CCCCcEEEEEeeCcc-hHHHHHHHh
Q psy13286 79 IATPGRILDLMDKQVANMDHCKILVLDEADKLLSQ-DFKGMLDHVISIL-PHERQILLYSATFPL-TVKNFMEKH 150 (351)
Q Consensus 79 v~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~-~~~~~~~~~~~~~-~~~~~~i~~SaT~~~-~~~~~~~~~ 150 (351)
+.+++.+...+.. +..+++|+||.+-+.... .....+..++... ......++++||... .+......+
T Consensus 284 ~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 284 VYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF 354 (424)
T ss_pred cCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh
Confidence 3455555555442 346799999998754332 1223444555422 222347778888764 334444443
No 342
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=66.60 E-value=7.4 Score=32.16 Aligned_cols=41 Identities=22% Similarity=0.384 Sum_probs=31.3
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEe
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSA 137 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 137 (351)
....++|+||++.-++......+..++....+..|+++.|-
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th 197 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTH 197 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S
T ss_pred ccccccccccccccccccccccccccccccccccccccccc
Confidence 45568999999998888878888888888888899888764
No 343
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=66.44 E-value=56 Score=31.77 Aligned_cols=114 Identities=17% Similarity=0.206 Sum_probs=60.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhC--CceEEEEECCcchHHH-----H-HHH---hCCCcEEEEccHHHHHHHh----
Q psy13286 26 ATLIIVPTRELALQTSQICIELAKHL--NVKVMVTTGGTNLRDD-----I-MRI---YQKVHLIIATPGRILDLMD---- 90 (351)
Q Consensus 26 ~~lil~P~~~L~~q~~~~~~~~~~~~--~~~v~~~~~~~~~~~~-----~-~~~---~~~~~Ilv~Tp~~l~~~l~---- 90 (351)
--.++.+...++...... ++... ..+...++|.....+- + ..+ ..+..++..|.+.+...+.
T Consensus 288 DnFvvG~sN~~A~aaa~a---vae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~ 364 (617)
T PRK14086 288 DTFVIGASNRFAHAAAVA---VAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIR 364 (617)
T ss_pred hhhcCCCccHHHHHHHHH---HHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHH
Confidence 346778888766433332 23221 2344677776543211 1 111 1256788888877653332
Q ss_pred ccC-----cCCCCccEEEEcccccccCcc-hHHHHHHHHHhCCC-CCcEEEEEeeCcch
Q psy13286 91 KQV-----ANMDHCKILVLDEADKLLSQD-FKGMLDHVISILPH-ERQILLYSATFPLT 142 (351)
Q Consensus 91 ~~~-----~~~~~~~lvViDE~h~~~~~~-~~~~~~~~~~~~~~-~~~~i~~SaT~~~~ 142 (351)
.+. ..+.++++|+|||+|.+.... ....+..++..+.. ..++++.|-..+..
T Consensus 365 ~~~~~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 365 DGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred hccHHHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 111 124678999999999876643 23344444444333 45566544444433
No 344
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=66.30 E-value=13 Score=26.32 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=29.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 228 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 228 (351)
..++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 467999998877888889999999985 778888874
No 345
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.27 E-value=6.5 Score=38.19 Aligned_cols=41 Identities=17% Similarity=0.352 Sum_probs=26.5
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEe
Q psy13286 96 MDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSA 137 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 137 (351)
..+++++||||+|+|....+.. +.+.+..-+....+|+.|.
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNA-LLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNA-MLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHH-HHHhhccCCCCceEEEEeC
Confidence 3567899999999887665543 3344555455565555544
No 346
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=65.92 E-value=7.1 Score=27.52 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=29.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 228 (351)
+..+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 3468999998877788889999999876 778888764
No 347
>PTZ00424 helicase 45; Provisional
Probab=65.89 E-value=30 Score=31.60 Aligned_cols=72 Identities=14% Similarity=0.208 Sum_probs=49.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH---HHh-CCCcEEEEccHHHHHHHhccCcCCCCcc
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM---RIY-QKVHLIIATPGRILDLMDKQVANMDHCK 100 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 100 (351)
.++++.|+++.-+..+.+.+++ .++.+..++|+.+..+... ... ...+|+|+|. .+ ...+++..++
T Consensus 268 ~~~ivF~~t~~~~~~l~~~l~~----~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----~l-~~GiDip~v~ 337 (401)
T PTZ00424 268 TQAIIYCNTRRKVDYLTKKMHE----RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-----LL-ARGIDVQQVS 337 (401)
T ss_pred CeEEEEecCcHHHHHHHHHHHH----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----cc-cCCcCcccCC
Confidence 5889999999988777766543 4788999999876544322 222 2588999994 12 2345678888
Q ss_pred EEEEcc
Q psy13286 101 ILVLDE 106 (351)
Q Consensus 101 lvViDE 106 (351)
+||.-+
T Consensus 338 ~VI~~~ 343 (401)
T PTZ00424 338 LVINYD 343 (401)
T ss_pred EEEEEC
Confidence 887543
No 348
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=65.65 E-value=18 Score=36.19 Aligned_cols=62 Identities=21% Similarity=0.233 Sum_probs=45.6
Q ss_pred cCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHH--------hCCCcEEEEcc
Q psy13286 17 LTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRI--------YQKVHLIIATP 82 (351)
Q Consensus 17 l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------~~~~~Ilv~Tp 82 (351)
+....+.++++++|+.|...|...++.++.... ++..+|+........... .+...|+|+|.
T Consensus 433 ~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~----~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQ 502 (733)
T COG1203 433 ISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP----KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQ 502 (733)
T ss_pred chhhhccCCcEEEEEecHHHHHHHHHHHHhcCC----CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEee
Confidence 344556679999999999999999998877653 788888887643332222 24688999996
No 349
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=65.60 E-value=21 Score=32.62 Aligned_cols=76 Identities=9% Similarity=0.090 Sum_probs=42.1
Q ss_pred CCcEE-EEccHHHHHHHhccCcCCCCccEEEEcccccccCcc-hHHHHHHHHHhCCCCCcEEEEEeeCc-chHHHHHHHh
Q psy13286 74 KVHLI-IATPGRILDLMDKQVANMDHCKILVLDEADKLLSQD-FKGMLDHVISILPHERQILLYSATFP-LTVKNFMEKH 150 (351)
Q Consensus 74 ~~~Il-v~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~SaT~~-~~~~~~~~~~ 150 (351)
+.+++ +.+|..+.+.+..-.. ..++++|+||-+-+..... .-..+..++....+...++.+|||.. .++...+..|
T Consensus 296 gipv~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F 374 (436)
T PRK11889 296 GFEVIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 374 (436)
T ss_pred CCcEEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHh
Confidence 34544 4577777665542211 1257999999998755432 23334444444333334666888755 3445555554
No 350
>KOG0343|consensus
Probab=65.58 E-value=79 Score=30.20 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=39.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcC----CeEEEeccCCCH-HHHHHHHHHhhcCCccEEEEeC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELG----YCCYYIHARMAQ-AHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~-~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
.+-.+||..++++-|....+.|.+.| +.+..+-||..- .++. +-...+|||||+
T Consensus 140 DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~e------Ri~~mNILVCTP 198 (758)
T KOG0343|consen 140 DGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELE------RISQMNILVCTP 198 (758)
T ss_pred CCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHH------hhhcCCeEEech
Confidence 35579999999999999999998763 556666666542 2333 336789999997
No 351
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=65.25 E-value=16 Score=26.50 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=30.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 228 (351)
+..++++||.+-..+..++..|+..|+. +..+.|++.
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 4568999999877888999999999984 778888763
No 352
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=65.24 E-value=11 Score=26.98 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=30.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCe--EEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYC--CYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~--~~~~~~~~~~ 229 (351)
++.++++||.+-..+...+..|+..|+. +..+.|+++.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~ 104 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQG 104 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHH
Confidence 3468999998877777788999999984 7888998754
No 353
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=65.12 E-value=9.7 Score=27.05 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=30.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 228 (351)
+..++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 3568999999988888999999999974 777777764
No 354
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=65.11 E-value=29 Score=23.62 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=30.4
Q ss_pred eEEEEcCCHH-HHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccH
Q psy13286 26 ATLIIVPTRE-LALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPG 83 (351)
Q Consensus 26 ~~lil~P~~~-L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~ 83 (351)
+++++||+-- ...-+...+++.+...++............ ...+.|++++|..
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~~~~-----~~~~~DlIisT~~ 54 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIEAEVEHTDLGSA-----KASSADIIVTSKD 54 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCcEEEEEeccccc-----CCCCCCEEEEchh
Confidence 4788998733 333344577777766665433322222111 1346899999985
No 355
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=65.05 E-value=11 Score=28.09 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=30.6
Q ss_pred CCCcEEEEeC-chHHHHHHHHHHHhcCCeEEEeccCCCH
Q psy13286 192 QINQSIIFCN-STQRVELLAKKITELGYCCYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~-~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 229 (351)
+..++++||. +-..+...+..|+..|+.+..+.|++..
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHH
Confidence 4568999996 4566778888888889999999998754
No 356
>PHA02558 uvsW UvsW helicase; Provisional
Probab=65.02 E-value=27 Score=33.16 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=49.5
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH--HHH-hC-CCcEEEEccHHHHHHHhccCcCCCCc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI--MRI-YQ-KVHLIIATPGRILDLMDKQVANMDHC 99 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~-~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 99 (351)
+.+++|++.+.+-+..+++.+++ .+.++..++|+.+..+.. ... .. ...|+|+|.+.+.+ .++...+
T Consensus 344 ~~~~lV~~~~~~h~~~L~~~L~~----~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~e-----G~Dip~l 414 (501)
T PHA02558 344 GENTFVMFKYVEHGKPLYEMLKK----VYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFST-----GISIKNL 414 (501)
T ss_pred CCCEEEEEEEHHHHHHHHHHHHH----cCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecc-----ccccccc
Confidence 46788889888766655555544 578999999997744332 222 22 34688998776633 4467888
Q ss_pred cEEEEc
Q psy13286 100 KILVLD 105 (351)
Q Consensus 100 ~lvViD 105 (351)
+.||+.
T Consensus 415 d~vIl~ 420 (501)
T PHA02558 415 HHVIFA 420 (501)
T ss_pred cEEEEe
Confidence 999875
No 357
>PRK07413 hypothetical protein; Validated
Probab=64.76 E-value=33 Score=31.05 Aligned_cols=99 Identities=14% Similarity=0.213 Sum_probs=57.2
Q ss_pred CCCccEEEEcccccccCcchH--HHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc-----CCCeEEeeccccccCCc
Q psy13286 96 MDHCKILVLDEADKLLSQDFK--GMLDHVISILPHERQILLYSATFPLTVKNFMEKHL-----KDPYEINLMEELTLKGV 168 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~--~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 168 (351)
-..+++||+||+-...+.++- ..+..++...|...-+|+..-.+|+.+.+.+.... ..|+...+.......+.
T Consensus 123 sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADlVTEm~~iKHp~~~~~~~~~~~~g~ 202 (382)
T PRK07413 123 SGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADLHSEMRPHRRPTASELGVPFNSSGG 202 (382)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCeeEEeceecCCCcCCCCcccCCCCe
Confidence 367899999999877776644 34556667666666666666666666555443221 22222222233444444
Q ss_pred eEEEEEcCcccHHHHHHHHHhhCCCC
Q psy13286 169 TQYYAFVQERQKVHCLNTLFSKLQIN 194 (351)
Q Consensus 169 ~~~~~~~~~~~k~~~l~~~l~~~~~~ 194 (351)
-+.|.-.-...-..++...++....+
T Consensus 203 i~VYTG~GKGKTTAAlGlAlRA~G~G 228 (382)
T PRK07413 203 IEIYTGEGKGKSTSALGKALQAIGRG 228 (382)
T ss_pred EEEEeCCCCCchHHHHHHHHHHhcCC
Confidence 45444444444566677777766545
No 358
>KOG3089|consensus
Probab=64.00 E-value=9 Score=31.32 Aligned_cols=34 Identities=41% Similarity=0.577 Sum_probs=30.1
Q ss_pred CCcEEEEccHHHHHHHhccCcCCCCccEEEEccc
Q psy13286 74 KVHLIIATPGRILDLMDKQVANMDHCKILVLDEA 107 (351)
Q Consensus 74 ~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~ 107 (351)
...+-|+||.++..+.+...+..+.+.++|+|=.
T Consensus 196 ~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~s 229 (271)
T KOG3089|consen 196 VVHLGIGTPGRIKELVKQGGFNLSPLKFIILDWS 229 (271)
T ss_pred ceeEeecCcHHHHHHHHhcCCCCCcceeEEeecc
Confidence 5778999999999999988888999999999953
No 359
>KOG0342|consensus
Probab=63.97 E-value=40 Score=31.36 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=38.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc-----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
+-.++|.|++++-|...+..++.. ++.+..+-|+... ..-.+.+.. -+++||||+
T Consensus 154 ~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~---~~e~~kl~k-~~niliATP 213 (543)
T KOG0342|consen 154 GTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNF---SVEADKLVK-GCNILIATP 213 (543)
T ss_pred CeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccc---hHHHHHhhc-cccEEEeCC
Confidence 456899999999888776666553 5667777776653 333445555 689999997
No 360
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=63.80 E-value=2.1e+02 Score=32.66 Aligned_cols=141 Identities=13% Similarity=0.220 Sum_probs=67.3
Q ss_pred CCCCccEEEEcccccccCcchHHHHHHHHHhC-CCCCcEEEEEee--Cc----chHHHHHHHhcCCCeEEeeccccccCC
Q psy13286 95 NMDHCKILVLDEADKLLSQDFKGMLDHVISIL-PHERQILLYSAT--FP----LTVKNFMEKHLKDPYEINLMEELTLKG 167 (351)
Q Consensus 95 ~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (351)
.+..-++|||||+.++....+ ..++... +...+++++.-+ ++ ......+...... ...........
T Consensus 526 ~l~~~~vlIVDEAsMl~~~~~----~~Ll~~a~~~garvVlvGD~~QL~sV~aG~~f~~L~~~gv~--t~~l~~i~rq~- 598 (1960)
T TIGR02760 526 PFSNKDIFVVDEANKLSNNEL----LKLIDKAEQHNSKLILLNDSAQRQGMSAGSAIDLLKEGGVT--TYAWVDTKQQK- 598 (1960)
T ss_pred CCCCCCEEEEECCCCCCHHHH----HHHHHHHhhcCCEEEEEcChhhcCccccchHHHHHHHCCCc--EEEeecccccC-
Confidence 345678999999997655543 3444333 355667777544 11 1223333332111 11111111111
Q ss_pred ceEEEEEcCcccHHHHHHH-HHhhC-CCCcEEEEeCchHHHHHHHHHHHhc----C------CeEEEec-cCCCHHHHHH
Q psy13286 168 VTQYYAFVQERQKVHCLNT-LFSKL-QINQSIIFCNSTQRVELLAKKITEL----G------YCCYYIH-ARMAQAHRNR 234 (351)
Q Consensus 168 ~~~~~~~~~~~~k~~~l~~-~l~~~-~~~~~lIf~~~~~~~~~l~~~L~~~----~------~~~~~~~-~~~~~~~r~~ 234 (351)
....+...........+.. ++... .+..++|+..+.++...+...++.. | .....+. ..++..++.
T Consensus 599 ~~v~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r- 677 (1960)
T TIGR02760 599 ASVEISEAVDKLRVDYIASAWLDLTPDRQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRR- 677 (1960)
T ss_pred cceeeeccCchHHHHHHHHHHHhcccccCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHh-
Confidence 1111121222222333333 33323 3346899999988888777777542 2 2222332 345666655
Q ss_pred HHHHhhcCC
Q psy13286 235 VFHDFRSGL 243 (351)
Q Consensus 235 ~~~~f~~g~ 243 (351)
....|+.|.
T Consensus 678 ~~~~Yr~Gd 686 (1960)
T TIGR02760 678 NAAHYKQGM 686 (1960)
T ss_pred hHhhcCCCC
Confidence 336666653
No 361
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=63.55 E-value=53 Score=30.18 Aligned_cols=110 Identities=15% Similarity=0.266 Sum_probs=55.9
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhhCC--ceEEEEECCcchHHH-----H-HHH---hCCCcEEEEccHHHHHHHh----c
Q psy13286 27 TLIIVPTRELALQTSQICIELAKHLN--VKVMVTTGGTNLRDD-----I-MRI---YQKVHLIIATPGRILDLMD----K 91 (351)
Q Consensus 27 ~lil~P~~~L~~q~~~~~~~~~~~~~--~~v~~~~~~~~~~~~-----~-~~~---~~~~~Ilv~Tp~~l~~~l~----~ 91 (351)
..++.+...++...... +....+ .+...++|.....+- + ..+ ..+..++..|.+.+...+. .
T Consensus 111 ~fi~g~~n~~a~~~~~~---~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~ 187 (405)
T TIGR00362 111 NFVVGKSNRLAHAAALA---VAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRN 187 (405)
T ss_pred ccccCCcHHHHHHHHHH---HHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHc
Confidence 34667888877555444 333322 345677777553221 1 111 1146677777776543221 1
Q ss_pred cCc-----CCCCccEEEEcccccccCcc-hHHHHHHHHHhC-CCCCcEEEEEeeCc
Q psy13286 92 QVA-----NMDHCKILVLDEADKLLSQD-FKGMLDHVISIL-PHERQILLYSATFP 140 (351)
Q Consensus 92 ~~~-----~~~~~~lvViDE~h~~~~~~-~~~~~~~~~~~~-~~~~~~i~~SaT~~ 140 (351)
+.. .+...++|++||+|.+.... ....+..++..+ ....+++ +|++.+
T Consensus 188 ~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~ii-its~~~ 242 (405)
T TIGR00362 188 NKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIV-LTSDRP 242 (405)
T ss_pred CCHHHHHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEE-EecCCC
Confidence 110 13467899999999876542 122233333322 2334444 555543
No 362
>PRK08116 hypothetical protein; Validated
Probab=63.54 E-value=11 Score=32.52 Aligned_cols=48 Identities=8% Similarity=0.143 Sum_probs=24.7
Q ss_pred CCCccEEEEcccccccCcch-HHHHHHHHHhC-CCCCcEEEEEeeCcchH
Q psy13286 96 MDHCKILVLDEADKLLSQDF-KGMLDHVISIL-PHERQILLYSATFPLTV 143 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~-~~~~~~~~~~~-~~~~~~i~~SaT~~~~~ 143 (351)
+...++||+||++.-....+ ...+..++... .....+++.|...+..+
T Consensus 176 l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL 225 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEEL 225 (268)
T ss_pred hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 45678999999964322222 22333444332 23344665555444443
No 363
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=63.24 E-value=58 Score=30.41 Aligned_cols=111 Identities=15% Similarity=0.279 Sum_probs=56.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhC--CceEEEEECCcchHHH-----H-HHHh---CCCcEEEEccHHHHHHHh----
Q psy13286 26 ATLIIVPTRELALQTSQICIELAKHL--NVKVMVTTGGTNLRDD-----I-MRIY---QKVHLIIATPGRILDLMD---- 90 (351)
Q Consensus 26 ~~lil~P~~~L~~q~~~~~~~~~~~~--~~~v~~~~~~~~~~~~-----~-~~~~---~~~~Ilv~Tp~~l~~~l~---- 90 (351)
-..++.|....+.... +++.... ..+-..++|.....+- + ..+. .+..++..|.+.+...+.
T Consensus 122 d~fv~g~~n~~a~~~~---~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~ 198 (450)
T PRK00149 122 DNFVVGKSNRLAHAAA---LAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALR 198 (450)
T ss_pred cccccCCCcHHHHHHH---HHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHH
Confidence 3456678887774444 4444332 2355677777553221 1 1111 145677777776543221
Q ss_pred ccC-----cCCCCccEEEEcccccccCcc-hHHHHHHHHHhC-CCCCcEEEEEeeCc
Q psy13286 91 KQV-----ANMDHCKILVLDEADKLLSQD-FKGMLDHVISIL-PHERQILLYSATFP 140 (351)
Q Consensus 91 ~~~-----~~~~~~~lvViDE~h~~~~~~-~~~~~~~~~~~~-~~~~~~i~~SaT~~ 140 (351)
... ..+...+++++||+|.+.... ....+..++..+ ....+++ +|++.+
T Consensus 199 ~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~ii-its~~~ 254 (450)
T PRK00149 199 NNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIV-LTSDRP 254 (450)
T ss_pred cCcHHHHHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEE-EECCCC
Confidence 111 024578899999999876543 222333333332 2334444 555443
No 364
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=63.10 E-value=42 Score=28.52 Aligned_cols=69 Identities=6% Similarity=0.100 Sum_probs=43.7
Q ss_pred cEEEEeCchHHHHHHHHHHHhcC---CeEEEec-cCCCHHHHHHHHHHhhcCCccEEEEeCc-----C-CCCCCCCCCCE
Q psy13286 195 QSIIFCNSTQRVELLAKKITELG---YCCYYIH-ARMAQAHRNRVFHDFRSGLCRNLVCSDL-----F-TRGIDVQAVNV 264 (351)
Q Consensus 195 ~~lIf~~~~~~~~~l~~~L~~~~---~~~~~~~-~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~-~~G~di~~~~~ 264 (351)
.+||.|.+--.|..+.+.|+... ..+..+- -.+.-++.. ..++.+...|.|+|+. + ...+.+.++.+
T Consensus 128 ~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv---~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~ 204 (252)
T PF14617_consen 128 HVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQV---KLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKR 204 (252)
T ss_pred EEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHH---HHHHhCCceEEEeChHHHHHHHHcCCCCcccCeE
Confidence 47888888888888999888763 2333232 223444433 3445678899999982 2 23455666666
Q ss_pred EE
Q psy13286 265 VI 266 (351)
Q Consensus 265 Vi 266 (351)
||
T Consensus 205 iv 206 (252)
T PF14617_consen 205 IV 206 (252)
T ss_pred EE
Confidence 55
No 365
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=62.90 E-value=15 Score=38.28 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=17.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh
Q psy13286 193 INQSIIFCNSTQRVELLAKKITE 215 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~ 215 (351)
...++|.+++.+.+..+-..++.
T Consensus 589 ~~~~lILa~tn~~v~~LN~~iR~ 611 (1102)
T PRK13826 589 TKTTLILAHLRRDVRMLNEMARA 611 (1102)
T ss_pred ccceEEECCchHHHHHHHHHHHH
Confidence 34589999998888877666654
No 366
>KOG0989|consensus
Probab=62.72 E-value=9.6 Score=33.15 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=33.8
Q ss_pred CCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCc
Q psy13286 95 NMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFP 140 (351)
Q Consensus 95 ~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 140 (351)
....+..+|+||||.|-.+. ...+...+...++...+++.+.-++
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 45677899999999876664 4456777777778888888877654
No 367
>KOG0334|consensus
Probab=62.56 E-value=30 Score=35.18 Aligned_cols=53 Identities=9% Similarity=0.297 Sum_probs=42.0
Q ss_pred cEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 195 QSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 195 ~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
-+||.|++++.+..+.+.++.. ++.+.+.+|+....+ -+...+.| ..|+|||.
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~---qiaelkRg-~eIvV~tp 496 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQ---QIAELKRG-AEIVVCTP 496 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHH---HHHHHhcC-CceEEecc
Confidence 3689999999999888777654 889999999887654 45566678 78888886
No 368
>PRK06526 transposase; Provisional
Probab=62.54 E-value=12 Score=31.95 Aligned_cols=69 Identities=10% Similarity=0.104 Sum_probs=37.1
Q ss_pred CCCcEEEEccHHHHHHHhcc----C-----cCCCCccEEEEcccccccCcch-HHHHHHHHHhCCCCCcEEEEEeeCcc
Q psy13286 73 QKVHLIIATPGRILDLMDKQ----V-----ANMDHCKILVLDEADKLLSQDF-KGMLDHVISILPHERQILLYSATFPL 141 (351)
Q Consensus 73 ~~~~Ilv~Tp~~l~~~l~~~----~-----~~~~~~~lvViDE~h~~~~~~~-~~~~~~~~~~~~~~~~~i~~SaT~~~ 141 (351)
.+..+++.|...+...+... . ..+.+.+++|+||+|....... ...+..++........+++.|...+.
T Consensus 125 ~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~ 203 (254)
T PRK06526 125 AGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFG 203 (254)
T ss_pred CCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHH
Confidence 35666666666665444211 1 1246789999999997643322 22344444332223446666666543
No 369
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.50 E-value=7.2 Score=36.99 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=26.5
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
.+++.+||||+|++....+.. +.+.+...+....+++.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~na-LLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNA-LLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHH-HHHHHhccCCCeEEEEEE
Confidence 467899999999887665543 444556656666566554
No 370
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=62.27 E-value=14 Score=35.52 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=43.1
Q ss_pred ceEEEEcCCHHHHHHHH-HHHHHHHhhCCceEEEEEC---CcchHHHHHHHhCCCcEEEEccHHHHHHHhccCcCCCCcc
Q psy13286 25 KATLIIVPTRELALQTS-QICIELAKHLNVKVMVTTG---GTNLRDDIMRIYQKVHLIIATPGRILDLMDKQVANMDHCK 100 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~-~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 100 (351)
..++++.||..++.++. +.+..+......--..+.. .............+..+.++...+-..+ .-..++
T Consensus 63 ~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~~~l------~s~~~r 136 (557)
T PF05876_consen 63 GPMLYVQPTDDAAKDFSKERLDPMIRASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSPSNL------RSRPAR 136 (557)
T ss_pred CCEEEEEEcHHHHHHHHHHHHHHHHHhCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCCccc------ccCCcC
Confidence 57999999999999988 4666666654310001111 0000000001111334444433222211 235778
Q ss_pred EEEEcccccccC
Q psy13286 101 ILVLDEADKLLS 112 (351)
Q Consensus 101 lvViDE~h~~~~ 112 (351)
++++||++....
T Consensus 137 ~~~~DEvD~~p~ 148 (557)
T PF05876_consen 137 YLLLDEVDRYPD 148 (557)
T ss_pred EEEEechhhccc
Confidence 999999998743
No 371
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=62.23 E-value=44 Score=33.74 Aligned_cols=64 Identities=13% Similarity=0.066 Sum_probs=48.7
Q ss_pred HHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHh----cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc
Q psy13286 183 CLNTLFSKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL 252 (351)
Q Consensus 183 ~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 252 (351)
.+...+....+..+-|.+++..-|.+-++.+.. .|+.+..+.|+++..+|...+. .+|+++|..
T Consensus 112 ~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~~ 179 (830)
T PRK12904 112 TLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTNN 179 (830)
T ss_pred HHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECCc
Confidence 334445666677788999998877776666654 5899999999999988887743 688888864
No 372
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=62.09 E-value=28 Score=26.72 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=31.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCC-eEEEeccCCCH
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMAQ 229 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~ 229 (351)
..+++|+|.+-..+..++..|...|+ ++..+.|++..
T Consensus 49 ~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~a 86 (145)
T cd01535 49 AERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAA 86 (145)
T ss_pred CCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHH
Confidence 46899999998888888999998887 78999998754
No 373
>KOG0328|consensus
Probab=61.94 E-value=24 Score=30.38 Aligned_cols=69 Identities=13% Similarity=0.212 Sum_probs=48.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHHhC-CCcEEEEccHHHHHHHhccCcCCCCcc
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRIYQ-KVHLIIATPGRILDLMDKQVANMDHCK 100 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 100 (351)
.+++|.|.|+.-+ +|+++-....+..|...+|+.+..+. +..... .++|+|+|- .+. ..++...++
T Consensus 267 tQavIFcnTk~kV----dwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTD-Vwa-----RGiDv~qVs 336 (400)
T KOG0328|consen 267 TQAVIFCNTKRKV----DWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTD-VWA-----RGIDVQQVS 336 (400)
T ss_pred heEEEEecccchh----hHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEec-hhh-----ccCCcceeE
Confidence 5789999998876 78888888889999999999875443 233333 478888884 221 234567777
Q ss_pred EEE
Q psy13286 101 ILV 103 (351)
Q Consensus 101 lvV 103 (351)
++|
T Consensus 337 lvi 339 (400)
T KOG0328|consen 337 LVI 339 (400)
T ss_pred EEE
Confidence 666
No 374
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=61.40 E-value=36 Score=31.00 Aligned_cols=70 Identities=16% Similarity=0.325 Sum_probs=41.4
Q ss_pred EEEccHHHHHHHhccCcCCCCccEEEEcccccccCc-chHHHHHHHHHhCCCCCcEEEEEeeCc-chHHHHHHHhc
Q psy13286 78 IIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQ-DFKGMLDHVISILPHERQILLYSATFP-LTVKNFMEKHL 151 (351)
Q Consensus 78 lv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~-~~~~~~~~~~~ 151 (351)
++-+|.-|...+. .+.+.|+|.||=+-+-..+ .....+..+......--..+.+|||.. .++.+....|.
T Consensus 265 vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~ 336 (407)
T COG1419 265 VVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS 336 (407)
T ss_pred EecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc
Confidence 5556666655443 3567799999988754332 233455555555544445778888864 33445555443
No 375
>KOG0337|consensus
Probab=60.89 E-value=41 Score=30.76 Aligned_cols=84 Identities=10% Similarity=0.044 Sum_probs=54.3
Q ss_pred HHHHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhcC----CeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc----
Q psy13286 182 HCLNTLFSKL-QINQSIIFCNSTQRVELLAKKITELG----YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL---- 252 (351)
Q Consensus 182 ~~l~~~l~~~-~~~~~lIf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~---- 252 (351)
..++.+.... .+-+++|..++++-+...-+.+++.+ .....+.|+.+.+++...+. +..++++||+-
T Consensus 78 pm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~----~npDii~ATpgr~~h 153 (529)
T KOG0337|consen 78 PMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLN----ENPDIIIATPGRLLH 153 (529)
T ss_pred HHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhc----cCCCEEEecCceeee
Confidence 3444444333 24589999999999988888887764 34555666655555444332 56789999972
Q ss_pred --CCCCCCCCCCCEEEEec
Q psy13286 253 --FTRGIDVQAVNVVINFD 269 (351)
Q Consensus 253 --~~~G~di~~~~~Vi~~~ 269 (351)
.++-+++..+..|++..
T Consensus 154 ~~vem~l~l~sveyVVfdE 172 (529)
T KOG0337|consen 154 LGVEMTLTLSSVEYVVFDE 172 (529)
T ss_pred eehheeccccceeeeeehh
Confidence 34455566777777544
No 376
>PRK04195 replication factor C large subunit; Provisional
Probab=60.66 E-value=97 Score=29.27 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhhCCceEEEEECCcchHHH--HHHHhC--CCcEEEEcc------HHHHHHHhccCc--C-C-CCcc
Q psy13286 35 ELALQTSQICIELAKHLNVKVMVTTGGTNLRDD--IMRIYQ--KVHLIIATP------GRILDLMDKQVA--N-M-DHCK 100 (351)
Q Consensus 35 ~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~--~~~Ilv~Tp------~~l~~~l~~~~~--~-~-~~~~ 100 (351)
....++..|+..+......+...++|.....+. ...+.+ +.+++..++ +.+...+..... . + ....
T Consensus 21 ~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~k 100 (482)
T PRK04195 21 KAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRK 100 (482)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCe
Confidence 444566666666553333566677766543221 111111 334444433 222222221111 1 2 2567
Q ss_pred EEEEcccccccC
Q psy13286 101 ILVLDEADKLLS 112 (351)
Q Consensus 101 lvViDE~h~~~~ 112 (351)
+||+||+|.+..
T Consensus 101 vIiIDEaD~L~~ 112 (482)
T PRK04195 101 LILLDEVDGIHG 112 (482)
T ss_pred EEEEecCccccc
Confidence 999999998865
No 377
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=60.65 E-value=20 Score=24.12 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=30.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHhcCC-eEEEeccCCC
Q psy13286 191 LQINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 228 (351)
Q Consensus 191 ~~~~~~lIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 228 (351)
.+..++++||.+...+..++..|+..|+ ++..+.|++.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 3467899999998899999999999964 5677777764
No 378
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=60.38 E-value=20 Score=26.28 Aligned_cols=38 Identities=3% Similarity=-0.023 Sum_probs=30.5
Q ss_pred CCCcEEEEeCc-hHHHHHHHHHHHhcCCe-EEEeccCCCH
Q psy13286 192 QINQSIIFCNS-TQRVELLAKKITELGYC-CYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~-~~~~~~l~~~L~~~~~~-~~~~~~~~~~ 229 (351)
+..++++||.+ -..+..++..|+..|+. +..+.|++..
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~ 117 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQA 117 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHH
Confidence 45678999988 47888889999998865 8888888753
No 379
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=59.70 E-value=16 Score=32.09 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=27.3
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
...+++|+||+|.+........+..++...+...++++.|
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 3568999999998744444556666677766666666544
No 380
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=59.55 E-value=53 Score=27.83 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=29.5
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcc
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPL 141 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 141 (351)
..+|.+++|=-+ ....+..+...+.+..+++.++.|.+.
T Consensus 162 ~~vDav~LDmp~------PW~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 162 EDVDAVFLDLPD------PWNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred cccCEEEEcCCC------hHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 488899999433 445677788888778889999988754
No 381
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=57.58 E-value=19 Score=28.12 Aligned_cols=52 Identities=13% Similarity=0.236 Sum_probs=35.7
Q ss_pred CCCccEEEEcccccccCcch--HHHHHHHHHhCCCCCcEEEEEeeCcchHHHHH
Q psy13286 96 MDHCKILVLDEADKLLSQDF--KGMLDHVISILPHERQILLYSATFPLTVKNFM 147 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 147 (351)
...++++|+||+-...+.++ ...+..++...+...-+++.+-.+|+.+.+.+
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 45789999999987666553 24566677777777667766666666655443
No 382
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=57.50 E-value=69 Score=29.69 Aligned_cols=54 Identities=7% Similarity=0.185 Sum_probs=34.9
Q ss_pred CCccEEEEcccccccCc-chHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHh
Q psy13286 97 DHCKILVLDEADKLLSQ-DFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKH 150 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~ 150 (351)
..+++||||=+-+.... ..-..+..+.....+...++.++|+........+..+
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 46789999998765443 2444555665555555567888888775555555544
No 383
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=55.77 E-value=97 Score=27.15 Aligned_cols=124 Identities=16% Similarity=0.155 Sum_probs=60.1
Q ss_pred ccHHHHHHHHHhhC-----C--CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHH-------------H
Q psy13286 178 RQKVHCLNTLFSKL-----Q--INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVF-------------H 237 (351)
Q Consensus 178 ~~k~~~l~~~l~~~-----~--~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~-------------~ 237 (351)
..|+..+..++... . +..++|.+++.++.+-+-..|...+.....+.|....++....- .
T Consensus 95 S~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (297)
T PF11496_consen 95 SGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSK 174 (297)
T ss_dssp -HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S---------------
T ss_pred CchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccc
Confidence 46777777766544 2 45789999999999999999988888888888865544333221 0
Q ss_pred Hhhc--CCccE-EEEeCcCCCC----CCCCCCCEEEEecCCCCh-hhHhhhccccccCCCceeEEEEeccch
Q psy13286 238 DFRS--GLCRN-LVCSDLFTRG----IDVQAVNVVINFDFPKMA-ETYLHRIGRSGRYGHLGIAINLITYED 301 (351)
Q Consensus 238 ~f~~--g~~~i-lv~T~~~~~G----~di~~~~~Vi~~~~p~s~-~~~~q~~GR~gR~~~~~~~i~~~~~~~ 301 (351)
.-.. ....| |+.|+-+... .+-.+++.||-+|...+. ...+|++-.-+|.+...-++-++..+-
T Consensus 175 ~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~~nS 246 (297)
T PF11496_consen 175 KKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVPSNS 246 (297)
T ss_dssp -------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEETTS
T ss_pred cccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEeeCCC
Confidence 0011 12334 4444444442 222356789999986543 345555533344334455565555443
No 384
>KOG0348|consensus
Probab=55.31 E-value=21 Score=33.59 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=46.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccC--CCHHHHHHHHHHhhcCCccEEEEeCc-------CCCCCCCCCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHAR--MAQAHRNRVFHDFRSGLCRNLVCSDL-------FTRGIDVQAVN 263 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~~r~~~~~~f~~g~~~ilv~T~~-------~~~G~di~~~~ 263 (351)
+--.||.+++++-|..+++-++++-....|+-.+ |.-+.|..--..++.| ++|||+|+- -...+++..++
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKG-iNILIgTPGRLvDHLknT~~i~~s~LR 289 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKG-INILIGTPGRLVDHLKNTKSIKFSRLR 289 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcC-ceEEEcCchHHHHHHhccchheeeeee
Confidence 4468999999999999998888874443333222 1222223333345556 799999972 23345566667
Q ss_pred EEEE
Q psy13286 264 VVIN 267 (351)
Q Consensus 264 ~Vi~ 267 (351)
++|.
T Consensus 290 wlVl 293 (708)
T KOG0348|consen 290 WLVL 293 (708)
T ss_pred EEEe
Confidence 6664
No 385
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=55.02 E-value=18 Score=36.50 Aligned_cols=39 Identities=23% Similarity=0.437 Sum_probs=27.0
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
.+++++||||+|+|....+. .+.+++...+....+|+.|
T Consensus 119 ~~~KV~IIDEad~lt~~a~N-aLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFN-ALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHHHH-HHHHHHhCCCCCeEEEEEe
Confidence 57789999999988765443 4555666666666566554
No 386
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=54.72 E-value=28 Score=24.93 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=28.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 228 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 228 (351)
+.++++||.+-..+...+..|...|+......|++.
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHH
Confidence 457999999888888899999999987656667654
No 387
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.66 E-value=93 Score=29.48 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=24.6
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 96 MDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
..+.+++||||+|.+....+.. +.+.+..-+....+++.|
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~Na-LLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAFNA-LLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHHHHH-HHHHHhCCCCCeEEEEEe
Confidence 3578899999999876655443 334444444444444443
No 388
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=53.49 E-value=18 Score=28.67 Aligned_cols=52 Identities=12% Similarity=0.207 Sum_probs=34.5
Q ss_pred CCCccEEEEcccccccCcchH--HHHHHHHHhCCCCCcEEEEEeeCcchHHHHH
Q psy13286 96 MDHCKILVLDEADKLLSQDFK--GMLDHVISILPHERQILLYSATFPLTVKNFM 147 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~--~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 147 (351)
-..+|+||+||+-...+.++- +.+..++...|...-+++..-..|+.+.+.+
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 357899999999877666533 3455666777666666666555665554443
No 389
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=53.37 E-value=75 Score=22.20 Aligned_cols=57 Identities=19% Similarity=0.192 Sum_probs=35.2
Q ss_pred ceEEEEcCCHHHHHHH-HHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHH
Q psy13286 25 KATLIIVPTRELALQT-SQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGR 84 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~ 84 (351)
.++|++|.+=.-...+ ...++++++..|+.+........ +......++|++++|++-
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~---e~~~~~~~~D~iv~t~~~ 60 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVN---EIETYMDGVHLICTTARV 60 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHH---HHhhhcCCCCEEEECCcc
Confidence 4788888864434444 46667777777877655553322 222233568999999843
No 390
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=53.13 E-value=49 Score=28.07 Aligned_cols=104 Identities=17% Similarity=0.198 Sum_probs=64.4
Q ss_pred HHHHhcCCCeEEeecccccc-CCceEEEEEcCcccHHHHHHHHHh-hCCCCcEEEEeCch-HHHHHHHHHHHhcCCeEEE
Q psy13286 146 FMEKHLKDPYEINLMEELTL-KGVTQYYAFVQERQKVHCLNTLFS-KLQINQSIIFCNST-QRVELLAKKITELGYCCYY 222 (351)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~l~~~l~-~~~~~~~lIf~~~~-~~~~~l~~~L~~~~~~~~~ 222 (351)
++....+.|..+.+.+.+.. +++ -.+.|.+.+. ....+.+|||...+ ++++++|+.+.-...+-..
T Consensus 141 fisaviHePeLlILDEPFSGLDPV-----------N~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V 209 (300)
T COG4152 141 FISAVIHEPELLILDEPFSGLDPV-----------NVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV 209 (300)
T ss_pred HHHHHhcCCCEEEecCCccCCChh-----------hHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE
Confidence 45556667776666554322 111 2234444333 33468899999987 7999999999877666667
Q ss_pred eccCCCHHHHHHHHHHhhcCCccEEEEeC-cCCCCCCCCCCCEEEE
Q psy13286 223 IHARMAQAHRNRVFHDFRSGLCRNLVCSD-LFTRGIDVQAVNVVIN 267 (351)
Q Consensus 223 ~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~G~di~~~~~Vi~ 267 (351)
++|.... +.+. .|+.+++|-.+ .++.--++|++..+-.
T Consensus 210 ~~G~v~~-----ir~~--~Gkk~~~ies~~s~eeL~~ipgi~~~~~ 248 (300)
T COG4152 210 LYGTVED-----IRRS--FGKKRLVIESDLSLEELANIPGILKITE 248 (300)
T ss_pred EeccHHH-----HHHh--cCCceEEEeccCchHHHhcCCCceeeee
Confidence 7775422 2222 27778887765 4555677777765543
No 391
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=52.60 E-value=40 Score=29.59 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=26.4
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEe
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSA 137 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 137 (351)
....++|+||||.+... -...+...+...+.+..+++.|.
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 67889999999987553 34455555555556665555543
No 392
>PRK09087 hypothetical protein; Validated
Probab=52.26 E-value=1.4e+02 Score=24.90 Aligned_cols=108 Identities=15% Similarity=0.155 Sum_probs=51.6
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHH--HHHHHhCCCcEEEEccHHHHHHHhccCcCCCCccE
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRD--DIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKI 101 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~l 101 (351)
..--.++.|....+-.+ ++++... ..+...++|.....+ -...........+-+++.+...+... +.. ++
T Consensus 19 ~~~~Fi~~~~N~~a~~~---l~~~~~~-~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~---~~~-~~ 90 (226)
T PRK09087 19 GRDDLLVTESNRAAVSL---VDHWPNW-PSPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANA---AAE-GP 90 (226)
T ss_pred ChhceeecCchHHHHHH---HHhcccC-CCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHh---hhc-Ce
Confidence 35567777877776554 4443322 234567776654321 12222223344455554332211111 112 68
Q ss_pred EEEcccccccCcchHHHHHHHHHhCCC-CCcEEEEEeeCcc
Q psy13286 102 LVLDEADKLLSQDFKGMLDHVISILPH-ERQILLYSATFPL 141 (351)
Q Consensus 102 vViDE~h~~~~~~~~~~~~~~~~~~~~-~~~~i~~SaT~~~ 141 (351)
+++|++|.+.. . ...+..+...... ..++++.|.+.++
T Consensus 91 l~iDDi~~~~~-~-~~~lf~l~n~~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 91 VLIEDIDAGGF-D-ETGLFHLINSVRQAGTSLLMTSRLWPS 129 (226)
T ss_pred EEEECCCCCCC-C-HHHHHHHHHHHHhCCCeEEEECCCChH
Confidence 99999997632 2 3345555544433 3444444444443
No 393
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=51.48 E-value=1.4e+02 Score=24.67 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=42.9
Q ss_pred ceEEEEECCcchHHH-----HH-H-HhCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHh
Q psy13286 53 VKVMVTTGGTNLRDD-----IM-R-IYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISI 125 (351)
Q Consensus 53 ~~v~~~~~~~~~~~~-----~~-~-~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~ 125 (351)
.....++|.....+. +. . ...+..+++.+...+...+. .....+++|+||+|.+.... ...+..++..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~liiDdi~~l~~~~-~~~L~~~~~~ 116 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFD----FDPEAELYAVDDVERLDDAQ-QIALFNLFNR 116 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHh----hcccCCEEEEeChhhcCchH-HHHHHHHHHH
Confidence 345667776543221 11 1 12345666776666544321 13456799999999764432 3334444433
Q ss_pred CCCCCc-EEEEEeeCc
Q psy13286 126 LPHERQ-ILLYSATFP 140 (351)
Q Consensus 126 ~~~~~~-~i~~SaT~~ 140 (351)
...... +++++++.+
T Consensus 117 ~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 117 VRAHGQGALLVAGPAA 132 (227)
T ss_pred HHHcCCcEEEEeCCCC
Confidence 322333 466666643
No 394
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=51.31 E-value=13 Score=36.32 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=24.7
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEE
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLY 135 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 135 (351)
.++..+||||+|+|....+.. +.+++..-+....+++.
T Consensus 118 g~~KV~IIDEah~Ls~~a~NA-LLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNA-LLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHHHH-HHHHHHcCCCCeEEEEe
Confidence 467899999999887665544 33455555555545544
No 395
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=51.22 E-value=34 Score=24.35 Aligned_cols=36 Identities=11% Similarity=0.307 Sum_probs=28.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 228 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 228 (351)
+.++++||.+-..+...+..|...|+......|++.
T Consensus 58 ~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 93 (101)
T TIGR02981 58 NDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGIK 93 (101)
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCHH
Confidence 457889999988888899999999986544457653
No 396
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=51.17 E-value=25 Score=28.38 Aligned_cols=51 Identities=18% Similarity=0.340 Sum_probs=23.5
Q ss_pred CccEEEEcccccccCcchH-----HHHHHHHHhCCCC-CcEEEEEeeCcchHHHHHHH
Q psy13286 98 HCKILVLDEADKLLSQDFK-----GMLDHVISILPHE-RQILLYSATFPLTVKNFMEK 149 (351)
Q Consensus 98 ~~~lvViDE~h~~~~~~~~-----~~~~~~~~~~~~~-~~~i~~SaT~~~~~~~~~~~ 149 (351)
.=.++|+||||........ +.....+...... .-++++|.. +..+...+..
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~-~~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQS-PSQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES--GGGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCC-HHHHhHHHHH
Confidence 4479999999987664322 1122333333333 345555554 3444444443
No 397
>PRK08181 transposase; Validated
Probab=51.02 E-value=38 Score=29.13 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=38.0
Q ss_pred CCCcEEEEccHHHHHHHhccC----c-----CCCCccEEEEcccccccCcch-HHHHHHHHHhCCCCCcEEEEEeeCc
Q psy13286 73 QKVHLIIATPGRILDLMDKQV----A-----NMDHCKILVLDEADKLLSQDF-KGMLDHVISILPHERQILLYSATFP 140 (351)
Q Consensus 73 ~~~~Ilv~Tp~~l~~~l~~~~----~-----~~~~~~lvViDE~h~~~~~~~-~~~~~~~~~~~~~~~~~i~~SaT~~ 140 (351)
.+..+++.|...|...+.... . .+.+.+++|+||.+....... ...+..++........+++.|...+
T Consensus 133 ~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~ 210 (269)
T PRK08181 133 NGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPF 210 (269)
T ss_pred cCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCH
Confidence 466777777766655443211 0 246789999999997644332 2334444444333344555554443
No 398
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=50.87 E-value=70 Score=31.90 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=57.1
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhccCcCCCCccEEE
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKILV 103 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvV 103 (351)
..+++|.+|+.+=++..+..+.+-+...|.+-.......... .........|=.-+|.... . .-+++|
T Consensus 261 ~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~~--~~~~~~~~~i~y~~P~~a~-~---------~~Dllv 328 (758)
T COG1444 261 SVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGEI--REVSGDGFRIEYVPPDDAQ-E---------EADLLV 328 (758)
T ss_pred CceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccccce--eeecCCceeEEeeCcchhc-c---------cCCEEE
Confidence 369999999999998888877776666664422222211100 0001122335555665553 1 158999
Q ss_pred EcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCc
Q psy13286 104 LDEADKLLSQDFKGMLDHVISILPHERQILLYSATFP 140 (351)
Q Consensus 104 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 140 (351)
||||=.+ .-+.+..+...++ .+++|.|+.
T Consensus 329 VDEAAaI----plplL~~l~~~~~----rv~~sTTIh 357 (758)
T COG1444 329 VDEAAAI----PLPLLHKLLRRFP----RVLFSTTIH 357 (758)
T ss_pred EehhhcC----ChHHHHHHHhhcC----ceEEEeeec
Confidence 9999854 2344555555543 578888864
No 399
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=50.86 E-value=30 Score=25.38 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=13.3
Q ss_pred ccEEEEcccccccCcc
Q psy13286 99 CKILVLDEADKLLSQD 114 (351)
Q Consensus 99 ~~lvViDE~h~~~~~~ 114 (351)
..++++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 5799999999887654
No 400
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=50.32 E-value=46 Score=33.68 Aligned_cols=54 Identities=7% Similarity=0.058 Sum_probs=34.4
Q ss_pred CcEEEEe-CchHHHHHHHHHHHhc---------------------------CCeEEEeccCCCHHHHHHHHHHhhcCCcc
Q psy13286 194 NQSIIFC-NSTQRVELLAKKITEL---------------------------GYCCYYIHARMAQAHRNRVFHDFRSGLCR 245 (351)
Q Consensus 194 ~~~lIf~-~~~~~~~~l~~~L~~~---------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 245 (351)
.+.|||+ ++++-+..+++.+.+. ++.+..++|+.+.+... +... ....
T Consensus 62 ~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~---~~l~-~~p~ 137 (844)
T TIGR02621 62 PRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW---MLDP-HRPA 137 (844)
T ss_pred cceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH---HhcC-CCCc
Confidence 3466666 8877776665555432 25678889998765432 2222 4568
Q ss_pred EEEEeC
Q psy13286 246 NLVCSD 251 (351)
Q Consensus 246 ilv~T~ 251 (351)
|+|+|.
T Consensus 138 IIVgT~ 143 (844)
T TIGR02621 138 VIVGTV 143 (844)
T ss_pred EEEECH
Confidence 999994
No 401
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=50.04 E-value=43 Score=25.38 Aligned_cols=46 Identities=9% Similarity=-0.090 Sum_probs=31.7
Q ss_pred HHHHHHhh---CCCCcEEEEeCc---hHHHHHHHHHHHhcCCe-EEEeccCCC
Q psy13286 183 CLNTLFSK---LQINQSIIFCNS---TQRVELLAKKITELGYC-CYYIHARMA 228 (351)
Q Consensus 183 ~l~~~l~~---~~~~~~lIf~~~---~~~~~~l~~~L~~~~~~-~~~~~~~~~ 228 (351)
.+..++.. .+..++|+||.+ -..+.+++-.|+..|+. +.++.|+++
T Consensus 82 ~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 82 EFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 34444443 346789999975 45667777888888865 778888865
No 402
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=49.78 E-value=1.1e+02 Score=29.38 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=29.5
Q ss_pred ccHHHHHHHhccCcCCCCccEEEEcccccccCcc-hHHHHHHHHHhCCCCCcEEEEEeeCc
Q psy13286 81 TPGRILDLMDKQVANMDHCKILVLDEADKLLSQD-FKGMLDHVISILPHERQILLYSATFP 140 (351)
Q Consensus 81 Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~SaT~~ 140 (351)
++..+...+.. +.++++|+||.+-+..... ....+..+.... ....+++++++..
T Consensus 415 d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss 470 (559)
T PRK12727 415 SAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAH 470 (559)
T ss_pred cHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCC
Confidence 34455555542 3568999999998643322 122233333222 2344677777754
No 403
>PRK02362 ski2-like helicase; Provisional
Probab=49.73 E-value=29 Score=34.80 Aligned_cols=72 Identities=8% Similarity=0.028 Sum_probs=50.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc---CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-----cCCCC-CCCCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL---GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD-----LFTRG-IDVQAV 262 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~G-~di~~~ 262 (351)
+++++++.+|+++-+...++.++.. +..+..++|+...... . -+..+|+|||+ .+..+ ..+.++
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~--l~~~~IiV~Tpek~~~llr~~~~~l~~v 138 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-----W--LGDNDIIVATSEKVDSLLRNGAPWLDDI 138 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-----c--cCCCCEEEECHHHHHHHHhcChhhhhhc
Confidence 4678999999999999998888876 7888899998764321 1 14578999995 12222 234567
Q ss_pred CEEEEecC
Q psy13286 263 NVVINFDF 270 (351)
Q Consensus 263 ~~Vi~~~~ 270 (351)
.+||.-..
T Consensus 139 ~lvViDE~ 146 (737)
T PRK02362 139 TCVVVDEV 146 (737)
T ss_pred CEEEEECc
Confidence 77775443
No 404
>PF15586 Imm47: Immunity protein 47
Probab=49.64 E-value=22 Score=26.12 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=25.5
Q ss_pred CCcEEEEccHHHHHHHhccCcCCCCccEEEEcccc
Q psy13286 74 KVHLIIATPGRILDLMDKQVANMDHCKILVLDEAD 108 (351)
Q Consensus 74 ~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h 108 (351)
..+|.|+||+-|.+...+... +..=.++|++|.+
T Consensus 44 ~F~v~VcTP~wL~~~~~~~~~-~~gr~~LIv~~yd 77 (116)
T PF15586_consen 44 YFQVFVCTPKWLSKNCWKPGI-LWGRHMLIVEEYD 77 (116)
T ss_pred eEEEEEEcHHHHHHhhcCCcc-eeccceEEEecCC
Confidence 378999999999887665443 2334689999977
No 405
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=48.60 E-value=17 Score=25.68 Aligned_cols=61 Identities=10% Similarity=0.156 Sum_probs=39.6
Q ss_pred EEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHH------------HHHHHHHHhhcCCccEEEEeCcCCCC
Q psy13286 196 SIIFCNSTQRVELLAKKITELGYCCYYIHARMAQA------------HRNRVFHDFRSGLCRNLVCSDLFTRG 256 (351)
Q Consensus 196 ~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~------------~r~~~~~~f~~g~~~ilv~T~~~~~G 256 (351)
.|+.+.....+..+++.|......+....|.+... .+.+.+...-.+.-.|+++||.-.+|
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EG 73 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREG 73 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHH
Confidence 47889999999999999975556777777754211 11333333334556888898875555
No 406
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=48.50 E-value=64 Score=27.55 Aligned_cols=16 Identities=13% Similarity=0.324 Sum_probs=12.6
Q ss_pred CCccEEEEcccccccC
Q psy13286 97 DHCKILVLDEADKLLS 112 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~ 112 (351)
...++||||..+.+..
T Consensus 139 ~~~~~vvID~l~~l~~ 154 (271)
T cd01122 139 HGIQHIIIDNLSIMVS 154 (271)
T ss_pred CCceEEEECCHHHHhc
Confidence 3678999999987654
No 407
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=48.49 E-value=85 Score=32.02 Aligned_cols=66 Identities=11% Similarity=-0.035 Sum_probs=48.5
Q ss_pred HHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHh----cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc
Q psy13286 181 VHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL 252 (351)
Q Consensus 181 ~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 252 (351)
...+...++...+..+.|.++++.-|.+.++++.. .|+.+.++.++++..+|... =..+|+.+|+.
T Consensus 111 ~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~------Y~~dI~YgT~~ 180 (908)
T PRK13107 111 TATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAA------YNADITYGTNN 180 (908)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhc------CCCCeEEeCCC
Confidence 34455566777777899999999888877777654 58999999999987554432 24688888864
No 408
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=48.39 E-value=26 Score=27.99 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=34.4
Q ss_pred CCCccEEEEcccccccCcchH--HHHHHHHHhCCCCCcEEEEEeeCcchHHHH
Q psy13286 96 MDHCKILVLDEADKLLSQDFK--GMLDHVISILPHERQILLYSATFPLTVKNF 146 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~--~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 146 (351)
-..++++|+||+-...+.++- ..+..++...|...-+|+..-.+|+.+.+.
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~ 165 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAI 165 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 357899999999877776644 345566777766666666555556555443
No 409
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.38 E-value=20 Score=33.55 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=16.1
Q ss_pred CCccEEEEcccccccCcchHHH
Q psy13286 97 DHCKILVLDEADKLLSQDFKGM 118 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~ 118 (351)
.++..+||||+|++....+...
T Consensus 120 g~~KV~IIDEah~Ls~~A~NAL 141 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNAL 141 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHH
Confidence 4568999999998766554433
No 410
>PRK10867 signal recognition particle protein; Provisional
Probab=48.23 E-value=98 Score=28.78 Aligned_cols=55 Identities=13% Similarity=0.191 Sum_probs=31.7
Q ss_pred CCccEEEEcccccccC-cchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc
Q psy13286 97 DHCKILVLDEADKLLS-QDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL 151 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 151 (351)
..+++||+|=+-++.. ...-..+..+.....+..-++.++|+......+.+..+.
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~ 237 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFN 237 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHH
Confidence 4578899988876543 233344555555554444466777776555555554443
No 411
>PLN02160 thiosulfate sulfurtransferase
Probab=48.21 E-value=31 Score=26.07 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=31.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~ 229 (351)
+..++++||.+=..+...+..|...|+. +..+.|++..
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~ 118 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLA 118 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHH
Confidence 4568999999999999999999999874 7778888653
No 412
>KOG0346|consensus
Probab=48.10 E-value=59 Score=29.98 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=50.1
Q ss_pred HHHHHHHHhhC------CCCcEEEEeCchHHHHHHHHHHHhc------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEE
Q psy13286 181 VHCLNTLFSKL------QINQSIIFCNSTQRVELLAKKITEL------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 248 (351)
Q Consensus 181 ~~~l~~~l~~~------~~~~~lIf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv 248 (351)
+..+..++... .+-..+|.++|++-|..++..+.++ .+.+.-+.++|+... .+.+-.+...|+|
T Consensus 75 iPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv----~~~~L~d~pdIvV 150 (569)
T KOG0346|consen 75 IPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSV----NSVALMDLPDIVV 150 (569)
T ss_pred HHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHH----HHHHHccCCCeEE
Confidence 44555555432 2346899999999999998888664 455556666776544 3355568899999
Q ss_pred EeCc-----CCCCCC
Q psy13286 249 CSDL-----FTRGID 258 (351)
Q Consensus 249 ~T~~-----~~~G~d 258 (351)
+|+. +..|+.
T Consensus 151 ~TP~~ll~~~~~~~~ 165 (569)
T KOG0346|consen 151 ATPAKLLRHLAAGVL 165 (569)
T ss_pred eChHHHHHHHhhccc
Confidence 9983 555653
No 413
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=47.75 E-value=69 Score=25.11 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=27.2
Q ss_pred CCccEEEEcccccccC-cchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHH
Q psy13286 97 DHCKILVLDEADKLLS-QDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEK 149 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 149 (351)
...+++|+|....... ......+..+.........++.+.+.-..........
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~ 134 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKA 134 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHH
Confidence 4667899999885432 2233334344333333444566666544443344433
No 414
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=47.45 E-value=32 Score=25.09 Aligned_cols=38 Identities=16% Similarity=0.339 Sum_probs=30.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~ 229 (351)
+..++++||.+-..+...+..|+..|+. +..+.|++..
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~ 101 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEG 101 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceec
Confidence 4567899998888888999999999875 6667887653
No 415
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=47.27 E-value=10 Score=34.28 Aligned_cols=21 Identities=14% Similarity=0.396 Sum_probs=16.2
Q ss_pred CCCccEEEEcccccccCcchH
Q psy13286 96 MDHCKILVLDEADKLLSQDFK 116 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~ 116 (351)
+...+++|+||+-++....|.
T Consensus 100 l~~~~~lIiDEism~~~~~l~ 120 (364)
T PF05970_consen 100 LRKADVLIIDEISMVSADMLD 120 (364)
T ss_pred hhhheeeecccccchhHHHHH
Confidence 578899999999976655443
No 416
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=47.18 E-value=92 Score=21.39 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=31.7
Q ss_pred CCCcEEEEeC------chHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHH
Q psy13286 192 QINQSIIFCN------STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFH 237 (351)
Q Consensus 192 ~~~~~lIf~~------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 237 (351)
.+.+++||.. ...-+.++.+.|...++....+.-....+.+.++.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~ 57 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE 57 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH
Confidence 3468999976 456778888999999887766664444544454444
No 417
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=47.13 E-value=43 Score=26.15 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=28.4
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeC
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATF 139 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 139 (351)
...+.+||||+|.+... ....+.+++..-+....++++|..+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 56889999999976555 3455667777777777666655543
No 418
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=46.87 E-value=28 Score=28.16 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=34.0
Q ss_pred CCCccEEEEcccccccCcchH--HHHHHHHHhCCCCCcEEEEEeeCcchHHHHH
Q psy13286 96 MDHCKILVLDEADKLLSQDFK--GMLDHVISILPHERQILLYSATFPLTVKNFM 147 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~--~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 147 (351)
-..+++||+||+-...+.++- +.+..++...|...-+|+..-..|+.+.+.+
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~A 166 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAA 166 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 367899999999877776644 3455666666666556655555565554444
No 419
>KOG0345|consensus
Probab=46.79 E-value=71 Score=29.74 Aligned_cols=70 Identities=9% Similarity=0.182 Sum_probs=50.5
Q ss_pred cEEEEeCchHHHHHHHHHHHh-----cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-----cCCC---CCCCCC
Q psy13286 195 QSIIFCNSTQRVELLAKKITE-----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD-----LFTR---GIDVQA 261 (351)
Q Consensus 195 ~~lIf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~---G~di~~ 261 (351)
..+|..+|++-|..+.+.+.. ..+.+..+-|+.+. .+=+..|++...+|||+|+ ++.+ ++++.+
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v---~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSV---EEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccH---HHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 579999999988776655543 25677788888654 3346778888899999997 3333 567778
Q ss_pred CCEEEE
Q psy13286 262 VNVVIN 267 (351)
Q Consensus 262 ~~~Vi~ 267 (351)
++++|.
T Consensus 158 Le~LVL 163 (567)
T KOG0345|consen 158 LEILVL 163 (567)
T ss_pred cceEEe
Confidence 887774
No 420
>PLN03025 replication factor C subunit; Provisional
Probab=46.49 E-value=27 Score=30.81 Aligned_cols=40 Identities=28% Similarity=0.442 Sum_probs=25.1
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEee
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSAT 138 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 138 (351)
.+.+++|+||+|.+.... ...+..++...+....+++ +++
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il-~~n 137 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFAL-ACN 137 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEE-EeC
Confidence 357899999999876543 3445555555555554444 443
No 421
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=46.19 E-value=1.3e+02 Score=22.92 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=50.4
Q ss_pred CcccHHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcC
Q psy13286 176 QERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLF 253 (351)
Q Consensus 176 ~~~~k~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~ 253 (351)
....+...+..++.+. .+.+++|+|.+.+.++.+-+.|=...-....=|+-.... ......|+|+...
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~l~~~~- 79 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG---------PAAGQPVLLTWPG- 79 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC---------CCCCCCEEEEcCC-
Confidence 4455677777777533 478999999999999999988844332323334422110 0124578887311
Q ss_pred CCCCCCCCCCEEEEecCC
Q psy13286 254 TRGIDVQAVNVVINFDFP 271 (351)
Q Consensus 254 ~~G~di~~~~~Vi~~~~p 271 (351)
..+.++..++||.+.-
T Consensus 80 --~~~~~~~~~LinL~~~ 95 (142)
T PRK05728 80 --KRNANHRDLLINLDGA 95 (142)
T ss_pred --CCCCCCCcEEEECCCC
Confidence 1233456778888753
No 422
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=46.13 E-value=34 Score=24.35 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=30.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~ 229 (351)
...+++++|.+-..+...+..|+..|+. +..+.|++..
T Consensus 57 ~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T PRK00162 57 FDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEA 95 (108)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHH
Confidence 3567889998888888888899999885 7778888743
No 423
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=46.08 E-value=94 Score=22.08 Aligned_cols=64 Identities=14% Similarity=0.095 Sum_probs=37.3
Q ss_pred HHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHH--HhccCcCCCCccEEEEcccc
Q psy13286 41 SQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDL--MDKQVANMDHCKILVLDEAD 108 (351)
Q Consensus 41 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~--l~~~~~~~~~~~lvViDE~h 108 (351)
.+.++++++..|+.+......... ......+.|+++.||+.=..+ ++. ......+-..++|..+
T Consensus 17 a~km~~~a~~~gi~~~i~a~~~~e---~~~~~~~~Dvill~PQv~~~~~~i~~-~~~~~~ipv~~I~~~~ 82 (99)
T cd05565 17 ANALNKGAKERGVPLEAAAGAYGS---HYDMIPDYDLVILAPQMASYYDELKK-DTDRLGIKLVTTTGKQ 82 (99)
T ss_pred HHHHHHHHHHCCCcEEEEEeeHHH---HHHhccCCCEEEEcChHHHHHHHHHH-HhhhcCCCEEEeCHHH
Confidence 456666677777776544433332 223455789999999865332 221 1122345678888766
No 424
>COG1204 Superfamily II helicase [General function prediction only]
Probab=46.08 E-value=72 Score=32.14 Aligned_cols=52 Identities=10% Similarity=-0.003 Sum_probs=42.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHH---hcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 193 INQSIIFCNSTQRVELLAKKIT---ELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~---~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
+++++-.||.+.-|++.++.++ ..|+++..++|+++..... -++.+|+|+|.
T Consensus 76 ~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~-------l~~~~ViVtT~ 130 (766)
T COG1204 76 GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDER-------LARYDVIVTTP 130 (766)
T ss_pred CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchhh-------hccCCEEEEch
Confidence 4789999999999999999998 6699999999998744311 15679999995
No 425
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.33 E-value=27 Score=34.01 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=24.4
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
.+++++||||+|++....+.. +.+.+..-+....+++.|
T Consensus 123 g~~KV~IIDEvh~Ls~~a~Na-LLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNA-MLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHHHH-HHHhcccCCCCeEEEEEE
Confidence 468899999999887665543 333444444444455444
No 426
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=45.25 E-value=84 Score=20.37 Aligned_cols=55 Identities=9% Similarity=0.106 Sum_probs=36.4
Q ss_pred cEEEEeC-chHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEE
Q psy13286 195 QSIIFCN-STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 249 (351)
Q Consensus 195 ~~lIf~~-~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~ 249 (351)
++.+|+. +...+.++...|...++....++=......+.++.+....+....++.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 4556654 467888999999999988877766666665666555544444444443
No 427
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=45.08 E-value=1.1e+02 Score=21.52 Aligned_cols=65 Identities=11% Similarity=0.069 Sum_probs=37.5
Q ss_pred HHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhcc-CcCCCCccEEEEcccc
Q psy13286 41 SQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQ-VANMDHCKILVLDEAD 108 (351)
Q Consensus 41 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~lvViDE~h 108 (351)
.+.++++++..++.+.....+..... ....+.|+++++|+.-...-.-. .....+.-..++|=.+
T Consensus 16 ~~ki~~~~~~~~~~~~v~~~~~~~~~---~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~~ 81 (96)
T cd05564 16 VKKMKKAAEKRGIDAEIEAVPESELE---EYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMMD 81 (96)
T ss_pred HHHHHHHHHHCCCceEEEEecHHHHH---HhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChHh
Confidence 45667777777877655555443222 23457899999998774321111 1122345567777555
No 428
>PRK05320 rhodanese superfamily protein; Provisional
Probab=45.07 E-value=45 Score=28.48 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=33.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~ 229 (351)
++.++++||.+=..++..+..|++.|+. +..+.|++..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 5678999999989999999999999985 8889999854
No 429
>KOG0383|consensus
Probab=45.07 E-value=15 Score=35.97 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc---CCccEEEEeCcCC
Q psy13286 180 KVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS---GLCRNLVCSDLFT 254 (351)
Q Consensus 180 k~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~ilv~T~~~~ 254 (351)
|...|...++.. .+.+++||........-+-..+...+ ....+.|......|...++.|+. ....+|.+|...+
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g 694 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGG 694 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccccc
Confidence 344444444433 46799999999999999999998888 77899999999999999999983 3567888998876
Q ss_pred CC
Q psy13286 255 RG 256 (351)
Q Consensus 255 ~G 256 (351)
.|
T Consensus 695 ~g 696 (696)
T KOG0383|consen 695 LG 696 (696)
T ss_pred CC
Confidence 55
No 430
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=44.91 E-value=1.4e+02 Score=22.95 Aligned_cols=46 Identities=7% Similarity=0.058 Sum_probs=36.7
Q ss_pred cEEEEeCc-------hHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhh
Q psy13286 195 QSIIFCNS-------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFR 240 (351)
Q Consensus 195 ~~lIf~~~-------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 240 (351)
+++||+.+ -..+.++...|+..++.....+=.+..+.++++.+.+.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g 53 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLG 53 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC
Confidence 35677765 78889999999999998888888888888888766543
No 431
>KOG1133|consensus
Probab=44.75 E-value=16 Score=35.53 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=25.7
Q ss_pred CCcEEEEccHHHHHHHhccCc--CCCCccEEEEcccccccC
Q psy13286 74 KVHLIIATPGRILDLMDKQVA--NMDHCKILVLDEADKLLS 112 (351)
Q Consensus 74 ~~~Ilv~Tp~~l~~~l~~~~~--~~~~~~lvViDE~h~~~~ 112 (351)
.+++++.-++.|+.--.++.+ .+++ ..|||||||.+.+
T Consensus 323 ~aqlV~LPYQ~LL~~stR~slgI~Lkd-sIvIiDEAHNlid 362 (821)
T KOG1133|consen 323 QAQLVTLPYQLLLHESTRKSLGISLKD-SIVIIDEAHNLID 362 (821)
T ss_pred cccEEeccHHHHHhHHHHHhcCccccc-cEEEEechhHHHH
Confidence 366777777777665544443 3333 6899999997755
No 432
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=44.28 E-value=43 Score=26.23 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=29.4
Q ss_pred CCCcEEEEeCchH-HHHHHHHHHHhcCCe-EEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQ-RVELLAKKITELGYC-CYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~-~~~~l~~~L~~~~~~-~~~~~~~~~~ 229 (351)
++.++++||.+-. .+...+..|+..|+. +..+.|++..
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~a 154 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDG 154 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHH
Confidence 5678999999753 566788888888876 7788898754
No 433
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=44.07 E-value=95 Score=31.14 Aligned_cols=62 Identities=6% Similarity=0.016 Sum_probs=42.1
Q ss_pred HHHHhhCCCCcEEEEeCchHHHHHHHHHH----HhcCCeEEEeccC-----CCHHHHHHHHHHhhcCCccEEEEeCc
Q psy13286 185 NTLFSKLQINQSIIFCNSTQRVELLAKKI----TELGYCCYYIHAR-----MAQAHRNRVFHDFRSGLCRNLVCSDL 252 (351)
Q Consensus 185 ~~~l~~~~~~~~lIf~~~~~~~~~l~~~L----~~~~~~~~~~~~~-----~~~~~r~~~~~~f~~g~~~ilv~T~~ 252 (351)
...++...+..++|.++++.-|.+.++.+ +..|..+....++ +.+..+... ...+|+++|+.
T Consensus 103 pa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~------y~~dIvygTp~ 173 (762)
T TIGR03714 103 PLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKI------YNSDIVYTTNS 173 (762)
T ss_pred HHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHh------CCCCEEEECch
Confidence 33445556677999999999998888877 4457877766554 444444433 23788999864
No 434
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=43.78 E-value=1.1e+02 Score=31.61 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=49.2
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHHhC---CCcEEEEccHHHHHHHhccCcCCC
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRIYQ---KVHLIIATPGRILDLMDKQVANMD 97 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~---~~~Ilv~Tp~~l~~~l~~~~~~~~ 97 (351)
+.++||+|-++.-+..+.+.+++ ..|+++..++|+.+..+.. ..... ++.|+|+| +.. ...+++.
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~---~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsT-dvg-----seGlNlq 563 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALRE---REGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCS-EIG-----SEGRNFQ 563 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhh---ccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEec-hhh-----ccCCCcc
Confidence 36999999999999888877743 3488999999998754332 22222 47899998 322 2234566
Q ss_pred CccEEEEc
Q psy13286 98 HCKILVLD 105 (351)
Q Consensus 98 ~~~lvViD 105 (351)
..+.||.=
T Consensus 564 ~a~~VInf 571 (956)
T PRK04914 564 FASHLVLF 571 (956)
T ss_pred cccEEEEe
Confidence 66665543
No 435
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=43.47 E-value=15 Score=34.68 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=19.5
Q ss_pred CCCccEEEEcccccccCcchHHHHH
Q psy13286 96 MDHCKILVLDEADKLLSQDFKGMLD 120 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~~~~ 120 (351)
..+++..||||+|++....|...++
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALLK 141 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALLK 141 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHhc
Confidence 5688999999999887777664443
No 436
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.25 E-value=46 Score=32.24 Aligned_cols=40 Identities=18% Similarity=0.362 Sum_probs=25.8
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 96 MDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
.....++||||+|++....+. .+...+...+....+|+.|
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~N-ALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGFN-ALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHHHH-HHHHHHhcCCCCeEEEEEe
Confidence 357789999999988665544 3444555555555555544
No 437
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=43.06 E-value=1.7e+02 Score=23.16 Aligned_cols=68 Identities=10% Similarity=0.155 Sum_probs=45.8
Q ss_pred HHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhc--CCeEE-EeccCCCHHHHHHHHHHhhcCCccEEE
Q psy13286 181 VHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITEL--GYCCY-YIHARMAQAHRNRVFHDFRSGLCRNLV 248 (351)
Q Consensus 181 ~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~ilv 248 (351)
.+.+..+++.. ++.++-++-.+.+.++.++..|++. ++.+. ..++-++..+...+++..+....++++
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 34444444422 2356667777788888999999887 55554 455656777888888888877766653
No 438
>KOG0332|consensus
Probab=43.00 E-value=70 Score=28.85 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=45.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHH---HhC-CCcEEEEccHHHHHHHhccCcCCCCcc
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMR---IYQ-KVHLIIATPGRILDLMDKQVANMDHCK 100 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 100 (351)
+.++|.|.|+.-+.-++..+++. |..|..++|+....+.-.. ... ...|+|+|.-.. ..++...+.
T Consensus 331 gqsiIFc~tk~ta~~l~~~m~~~----Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~A------RGiDv~qVs 400 (477)
T KOG0332|consen 331 GQSIIFCHTKATAMWLYEEMRAE----GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCA------RGIDVAQVS 400 (477)
T ss_pred hheEEEEeehhhHHHHHHHHHhc----CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhh------cccccceEE
Confidence 68899999999987666666444 7889999998765433222 222 467899885322 133566666
Q ss_pred EEE
Q psy13286 101 ILV 103 (351)
Q Consensus 101 lvV 103 (351)
+||
T Consensus 401 ~Vv 403 (477)
T KOG0332|consen 401 VVV 403 (477)
T ss_pred EEE
Confidence 655
No 439
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=42.96 E-value=1.7e+02 Score=23.32 Aligned_cols=67 Identities=6% Similarity=0.038 Sum_probs=44.9
Q ss_pred HHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhc--CCeEEEeccCCCHHHHHHHHHHhhcCCccEE
Q psy13286 181 VHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNL 247 (351)
Q Consensus 181 ~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~il 247 (351)
.+.+..+++.. .+.++.++-.+.+.++.+++.|+.. ++.+.-.||-.+.++...+.+..+....+++
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil 104 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIV 104 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 44555555433 2345666667778888999999876 5665555888877777777887777666554
No 440
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=42.87 E-value=1.4e+02 Score=32.06 Aligned_cols=73 Identities=8% Similarity=0.117 Sum_probs=51.0
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhC--CCcEEEEccHHHHHHHhccCcCCCCccE
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQ--KVHLIIATPGRILDLMDKQVANMDHCKI 101 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~Ilv~Tp~~l~~~l~~~~~~~~~~~l 101 (351)
.+.+||.+|+..-+.+..+.+++.. ..++.+..++|+.+..++...+.. ...|+|+|. +.. ..+++..+++
T Consensus 279 ~GdILVFLpg~~EI~~l~~~L~~~~-~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATN--IAE----tSLTIpgV~y 351 (1283)
T TIGR01967 279 PGDILIFLPGEREIRDAAEILRKRN-LRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATN--VAE----TSLTVPGIHY 351 (1283)
T ss_pred CCCEEEeCCCHHHHHHHHHHHHhcC-CCCcEEEeccCCCCHHHHHHHhCCCCCceEEEecc--HHH----hccccCCeeE
Confidence 3689999999999998888886542 124678899999876665544432 358999996 322 2445677776
Q ss_pred EE
Q psy13286 102 LV 103 (351)
Q Consensus 102 vV 103 (351)
||
T Consensus 352 VI 353 (1283)
T TIGR01967 352 VI 353 (1283)
T ss_pred EE
Confidence 54
No 441
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=42.17 E-value=1.7e+02 Score=23.07 Aligned_cols=67 Identities=9% Similarity=0.084 Sum_probs=45.8
Q ss_pred HHHHHHHHhhCC--CCcEEEEeCchHHHHHHHHHHHhc--CCeEEE-eccCCCHHHHHHHHHHhhcCCccEE
Q psy13286 181 VHCLNTLFSKLQ--INQSIIFCNSTQRVELLAKKITEL--GYCCYY-IHARMAQAHRNRVFHDFRSGLCRNL 247 (351)
Q Consensus 181 ~~~l~~~l~~~~--~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~~-~~~~~~~~~r~~~~~~f~~g~~~il 247 (351)
.+.+..+++... +.++.++-.+.+.++.+++.|++. ++.+.- .|+-+..++...+++..+....+++
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv 103 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADIL 103 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEE
Confidence 444555554332 456777777888888999899887 566544 6777777776777888877766655
No 442
>PRK11054 helD DNA helicase IV; Provisional
Probab=42.17 E-value=19 Score=35.68 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=36.5
Q ss_pred CcccccCCc----chhhhcccCc-CCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEE
Q psy13286 1 MVQARQEPT----QFLYLNKLTP-AKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVT 58 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~-~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~ 58 (351)
+|.|..||| ++.-+..+.. ....+.++|+++.|+..+.++.+.+.+.....++.+.++
T Consensus 213 lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~~v~v~TF 275 (684)
T PRK11054 213 LVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTEDITARTF 275 (684)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCCCcEEEeH
Confidence 466777776 3333333332 223346999999999999999998877664334444333
No 443
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=41.99 E-value=40 Score=23.86 Aligned_cols=38 Identities=18% Similarity=0.422 Sum_probs=25.6
Q ss_pred CCCcEEEEeCchHHHHHHHHH-----HHhcCC-eEEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKK-----ITELGY-CCYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~-----L~~~~~-~~~~~~~~~~~ 229 (351)
....+++||.+-......+.. |+..|+ ++.++.||+..
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~ 109 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEA 109 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHH
Confidence 345688889555544444444 777787 89999998643
No 444
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=41.93 E-value=39 Score=27.74 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=20.9
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEe
Q psy13286 100 KILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSA 137 (351)
Q Consensus 100 ~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 137 (351)
.+||+|||+.+.. ..++.++.......+++++.-
T Consensus 121 ~~iIvDEaQN~t~----~~~k~ilTR~g~~skii~~GD 154 (205)
T PF02562_consen 121 AFIIVDEAQNLTP----EELKMILTRIGEGSKIIITGD 154 (205)
T ss_dssp EEEEE-SGGG--H----HHHHHHHTTB-TT-EEEEEE-
T ss_pred eEEEEecccCCCH----HHHHHHHcccCCCcEEEEecC
Confidence 7999999997533 456777777777777776644
No 445
>PRK10536 hypothetical protein; Provisional
Probab=41.70 E-value=41 Score=28.70 Aligned_cols=32 Identities=16% Similarity=0.388 Sum_probs=23.5
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEE
Q psy13286 100 KILVLDEADKLLSQDFKGMLDHVISILPHERQILLY 135 (351)
Q Consensus 100 ~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 135 (351)
++||+|||+.+.. ..++.++.....+.+++++
T Consensus 178 ~~vIvDEaqn~~~----~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 178 AVVILDEAQNVTA----AQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred CEEEEechhcCCH----HHHHHHHhhcCCCCEEEEe
Confidence 7999999997543 4567777777777766654
No 446
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=41.56 E-value=1.6e+02 Score=29.47 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=43.3
Q ss_pred HHHHHHHHhhCCCCcEEEEeCchHHHH----HHHHHHHhcCCeEEEeccCCCHHHHHHHHH
Q psy13286 181 VHCLNTLFSKLQINQSIIFCNSTQRVE----LLAKKITELGYCCYYIHARMAQAHRNRVFH 237 (351)
Q Consensus 181 ~~~l~~~l~~~~~~~~lIf~~~~~~~~----~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 237 (351)
...+...+....+.++.|.+++.--|. .+...++..|+.+.++.++++..+|...++
T Consensus 107 vA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY~ 167 (764)
T PRK12326 107 AGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAYA 167 (764)
T ss_pred HHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHc
Confidence 445566677778888999999865554 555555667999999999999998887764
No 447
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.38 E-value=1.3e+02 Score=29.18 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=25.2
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 96 MDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
..+.+++||||+|++....+. .+..++...+....+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~a~n-aLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNAFN-ALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHHHH-HHHHHHHcCCCCeEEEEEe
Confidence 457789999999987655443 4445555555555455444
No 448
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=41.14 E-value=36 Score=27.02 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=29.7
Q ss_pred CCCccEEEEcccccccCcchH--HHHHHHHHhCCCCCcEEEEEeeCcchHHHHH
Q psy13286 96 MDHCKILVLDEADKLLSQDFK--GMLDHVISILPHERQILLYSATFPLTVKNFM 147 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~--~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 147 (351)
-..+++||+||+-...+.++- ..+..++...|...-+|+..-.+++.+.+.+
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 467899999999877666543 3455666666666666655555555554444
No 449
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=40.77 E-value=4.2e+02 Score=27.69 Aligned_cols=17 Identities=35% Similarity=0.683 Sum_probs=13.7
Q ss_pred CCccEEEEcccccccCc
Q psy13286 97 DHCKILVLDEADKLLSQ 113 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~ 113 (351)
....+||+||+|.+...
T Consensus 868 r~v~IIILDEID~L~kK 884 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK 884 (1164)
T ss_pred ccceEEEeehHhhhCcc
Confidence 45678999999988764
No 450
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.61 E-value=1.9e+02 Score=26.58 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=22.2
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEE
Q psy13286 96 MDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLY 135 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 135 (351)
+....++||||+|.+....... +...+...+....+++.
T Consensus 125 ~~~~kvvIIdea~~l~~~~~~~-LLk~LEep~~~t~~Il~ 163 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAAFNA-FLKTLEEPPPHAIFIFA 163 (397)
T ss_pred cCCeEEEEEeChhhCCHHHHHH-HHHHHhcCCCCeEEEEE
Confidence 4566899999999886544333 33333333333334433
No 451
>PRK00254 ski2-like helicase; Provisional
Probab=40.52 E-value=1e+02 Score=30.87 Aligned_cols=71 Identities=11% Similarity=0.190 Sum_probs=49.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh---cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-----cCCCC-CCCCCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITE---LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD-----LFTRG-IDVQAVN 263 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~G-~di~~~~ 263 (351)
++++|+.+|+++-+...++.++. .+..+..++|+.+...+ + .+..+|+|+|+ .+..+ ..+.++.
T Consensus 68 ~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~------~-~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~ 140 (720)
T PRK00254 68 GGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE------W-LGKYDIIIATAEKFDSLLRHGSSWIKDVK 140 (720)
T ss_pred CCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh------h-hccCCEEEEcHHHHHHHHhCCchhhhcCC
Confidence 56899999999999988877764 47888999998865321 1 15678999995 22221 3356777
Q ss_pred EEEEecC
Q psy13286 264 VVINFDF 270 (351)
Q Consensus 264 ~Vi~~~~ 270 (351)
+||.-..
T Consensus 141 lvViDE~ 147 (720)
T PRK00254 141 LVVADEI 147 (720)
T ss_pred EEEEcCc
Confidence 7775443
No 452
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=40.22 E-value=1e+02 Score=20.95 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=37.6
Q ss_pred eEEEEcCCHHHHHHH-HHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhccCcCCCCccEEEE
Q psy13286 26 ATLIIVPTRELALQT-SQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKILVL 104 (351)
Q Consensus 26 ~~lil~P~~~L~~q~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvVi 104 (351)
+++++|++--=..++ ...+++.++..++............. .+.|++++|.+--. .+... ......+.+
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~~~~~------~~~Dliitt~~l~~-~~~~~---~~~~~vi~v 71 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLEIPVTNSAIDELP------SDADLVVTHASLTD-RAKKK---APQAQHLSV 71 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEcchhhCC------CCCCEEEEChHHHH-HHHhc---CCCCeEEEE
Confidence 678888863333333 44555555555555444443332111 46899999976543 22211 123456777
Q ss_pred cc
Q psy13286 105 DE 106 (351)
Q Consensus 105 DE 106 (351)
|.
T Consensus 72 ~~ 73 (87)
T cd05567 72 DN 73 (87)
T ss_pred ec
Confidence 74
No 453
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=39.80 E-value=59 Score=25.70 Aligned_cols=46 Identities=7% Similarity=0.030 Sum_probs=24.5
Q ss_pred CcccccCCcchhhhccc-CcCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q psy13286 1 MVQARQEPTQFLYLNKL-TPAKITSKATLIIVPTRELALQTSQICIEL 47 (351)
Q Consensus 1 ~~~a~tgs~~l~~l~~l-~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 47 (351)
+|..++|+|--.+..++ ......+.+++|+... +-..++.+.++.+
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHHc
Confidence 35677787622222222 1122334678887654 5566666666655
No 454
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=39.80 E-value=2e+02 Score=25.92 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=39.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCc---chHHHHHHHhCCCc-EEEEccH----------HHHHHHh
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGT---NLRDDIMRIYQKVH-LIIATPG----------RILDLMD 90 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~-Ilv~Tp~----------~l~~~l~ 90 (351)
..+++..||-.. ....++..|.++..+.-.. ........+..+.+ |+|++|. .+..++.
T Consensus 100 d~vl~~~Ptf~~-------Y~~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~ 172 (356)
T COG0079 100 DTVLIPEPTFSM-------YEIAAQLAGAEVVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLE 172 (356)
T ss_pred CEEEEcCCChHH-------HHHHHHhcCCeEEEecccccccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 488999999444 3444555576655555432 11222223333344 6777663 3344433
Q ss_pred ccCcCCCCccEEEEccccc
Q psy13286 91 KQVANMDHCKILVLDEADK 109 (351)
Q Consensus 91 ~~~~~~~~~~lvViDE~h~ 109 (351)
.. ..=.+||+|||-.
T Consensus 173 ~~----~~~~~vVvDEAY~ 187 (356)
T COG0079 173 AL----PEGGLVVIDEAYI 187 (356)
T ss_pred hC----CCCcEEEEeCchh
Confidence 21 1235899999873
No 455
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=39.71 E-value=1.9e+02 Score=24.87 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=32.2
Q ss_pred CCccEEEEcccccccCc-chHHHHHHHHHhCC------CCCcEEEEEeeCcchHHHHHHH
Q psy13286 97 DHCKILVLDEADKLLSQ-DFKGMLDHVISILP------HERQILLYSATFPLTVKNFMEK 149 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~-~~~~~~~~~~~~~~------~~~~~i~~SaT~~~~~~~~~~~ 149 (351)
..+++|+||=+-+.... ....++..+....+ ..-.++.++|+...........
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~ 212 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKV 212 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHH
Confidence 56799999988866532 23345555555443 4445788888865443333333
No 456
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=39.61 E-value=41 Score=28.68 Aligned_cols=126 Identities=13% Similarity=0.122 Sum_probs=67.9
Q ss_pred cEEEEEeeCcchHH------HHHHHhcCCCeEEeeccccccCCceEEEEEcCcc-cHHHHHHHHHhh--CCCCcEEEEeC
Q psy13286 131 QILLYSATFPLTVK------NFMEKHLKDPYEINLMEELTLKGVTQYYAFVQER-QKVHCLNTLFSK--LQINQSIIFCN 201 (351)
Q Consensus 131 ~~i~~SaT~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~--~~~~~~lIf~~ 201 (351)
++-++|.|.+..-. .+++.|... .+.|..+.-+-. +....+.++..- -+.-++||+++
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~-------------~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIVv~q 70 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV-------------MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIVVSQ 70 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH-------------EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEEEE-
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc-------------eEEEEeCCCcccchHHHHHHHHHHhccCCCccEEEEeC
Confidence 46678888775433 334433322 133333333322 334445555542 23458999999
Q ss_pred chHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCC------CCCEEEEecCCCChh
Q psy13286 202 STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQ------AVNVVINFDFPKMAE 275 (351)
Q Consensus 202 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~------~~~~Vi~~~~p~s~~ 275 (351)
...-....-+.+++..-.+.++.|....+ ..++. ...++.+.++...+|-.++ ++...+|+.+|+...
T Consensus 71 ~vpGt~~af~kIkekRpDIl~ia~~~~ED--p~~i~----~~aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfprhms 144 (275)
T PF12683_consen 71 AVPGTAEAFRKIKEKRPDILLIAGEPHED--PEVIS----SAADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPRHMS 144 (275)
T ss_dssp SS---HHHHHHHHHH-TTSEEEESS--S---HHHHH----HHSSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEETTGGG
T ss_pred CCcchHHHHHHHHhcCCCeEEEcCCCcCC--HHHHh----hccCeEeccchhhccHHHHHHHHHcCCceEEEEechhhcc
Confidence 99888888888888877877887765432 22222 2358888888888888876 677899999997654
No 457
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=39.61 E-value=41 Score=27.95 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=29.0
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhCCC-CCcEEEEEe
Q psy13286 100 KILVLDEADKLLSQDFKGMLDHVISILPH-ERQILLYSA 137 (351)
Q Consensus 100 ~lvViDE~h~~~~~~~~~~~~~~~~~~~~-~~~~i~~Sa 137 (351)
.++++||.+.-+...+...+..++..... ..|+++.|-
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTH 297 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTH 297 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCc
Confidence 78999999988888777766677766655 678876654
No 458
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=39.52 E-value=1.3e+02 Score=21.03 Aligned_cols=80 Identities=13% Similarity=0.161 Sum_probs=44.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHH--HhccCcCCCCccEE
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDL--MDKQVANMDHCKIL 102 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~--l~~~~~~~~~~~lv 102 (351)
.++|++|-+=.=..-+...+++.++..++++.....+.... .......|+++.+|+.-..+ ++.. ..-..+...
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~---~~~~~~~Dvill~pqi~~~~~~i~~~-~~~~~ipv~ 79 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAA---GEKLDDADVVLLAPQVAYMLPDLKKE-TDKKGIPVE 79 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHH---HhhcCCCCEEEECchHHHHHHHHHHH-hhhcCCCEE
Confidence 57777776433233345666777777788765555544322 22335689999999876432 2211 112234566
Q ss_pred EEcccc
Q psy13286 103 VLDEAD 108 (351)
Q Consensus 103 ViDE~h 108 (351)
++|-.+
T Consensus 80 ~I~~~~ 85 (95)
T TIGR00853 80 VINGAQ 85 (95)
T ss_pred EeChhh
Confidence 666544
No 459
>KOG0351|consensus
Probab=39.39 E-value=76 Score=32.70 Aligned_cols=124 Identities=14% Similarity=0.238 Sum_probs=77.3
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcC--CccEEEEeC-cC--CCCC-----CCCC--
Q psy13286 194 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG--LCRNLVCSD-LF--TRGI-----DVQA-- 261 (351)
Q Consensus 194 ~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~ilv~T~-~~--~~G~-----di~~-- 261 (351)
+-++|..+-..-.+.-...|...++.+..+++++...+|..+++.+.+| .+++|-.|+ .+ ..++ ++..
T Consensus 305 gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~ 384 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARG 384 (941)
T ss_pred CceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCC
Confidence 4567777888888888888888899999999999999999999999999 788887775 21 1121 2222
Q ss_pred CCEEEEecCCCChhhH-------hhhccccccCCCcee-EEEEeccchHHHHHHHHHHhccccCC
Q psy13286 262 VNVVINFDFPKMAETY-------LHRIGRSGRYGHLGI-AINLITYEDRYALHRIEKELGTEIKS 318 (351)
Q Consensus 262 ~~~Vi~~~~p~s~~~~-------~q~~GR~gR~~~~~~-~i~~~~~~~~~~~~~l~~~l~~~~~~ 318 (351)
.-..+.+|--.-+..+ ..+.|- .|....+. .+.+...........+.+.|+.....
T Consensus 385 ~lal~vIDEAHCVSqWgHdFRp~Yk~l~~-l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~ 448 (941)
T KOG0351|consen 385 LLALFVIDEAHCVSQWGHDFRPSYKRLGL-LRIRFPGVPFIALTATATERVREDVIRSLGLRNPE 448 (941)
T ss_pred eeEEEEecHHHHhhhhcccccHHHHHHHH-HHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcc
Confidence 1112222211111111 123332 23333343 33344445667778888888887765
No 460
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.38 E-value=36 Score=33.39 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=24.7
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
.+.+++||||+|++....+. .+..++...+....+++.|
T Consensus 117 gk~KV~IIDEVh~LS~~A~N-ALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFN-ALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHHHH-HHHHHHhcCCCCcEEEEEE
Confidence 46789999999987665544 3444555555555455443
No 461
>PHA00350 putative assembly protein
Probab=39.11 E-value=41 Score=30.73 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=11.9
Q ss_pred cEEEEcccccccCc
Q psy13286 100 KILVLDEADKLLSQ 113 (351)
Q Consensus 100 ~lvViDE~h~~~~~ 113 (351)
.+|||||||.+...
T Consensus 83 aLIViDEaq~~~p~ 96 (399)
T PHA00350 83 ALYVIDEAQMIFPK 96 (399)
T ss_pred CEEEEECchhhcCC
Confidence 69999999988654
No 462
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.04 E-value=30 Score=33.05 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=25.6
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 96 MDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
..+.+++||||+|++....+.. +.+.+...+....+++.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~na-LLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNA-MLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHH-HHHHHhCCCCCEEEEEEe
Confidence 3567899999999876654443 344445555555555554
No 463
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=38.64 E-value=19 Score=35.69 Aligned_cols=32 Identities=6% Similarity=0.019 Sum_probs=27.1
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCCeEEEecc
Q psy13286 194 NQSIIFCNSTQRVELLAKKITELGYCCYYIHA 225 (351)
Q Consensus 194 ~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~ 225 (351)
+.+-|.+.+..++..+.+.|.+.|+++....+
T Consensus 343 ~diAVL~Rs~~~~~~le~~L~~~gIP~~~~~~ 374 (672)
T PRK10919 343 KDYAILYRGNHQSRVFEKFLMQNRIPYKISGG 374 (672)
T ss_pred CcEEEEEeCchhHHHHHHHHHHcCCCEEEeCC
Confidence 56788899999999999999999999766544
No 464
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=38.64 E-value=33 Score=23.94 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=24.2
Q ss_pred HHHHHhcCCeEEEe----ccCCCHHHHHHHHHHhhcCCccEEEEeCc
Q psy13286 210 AKKITELGYCCYYI----HARMAQAHRNRVFHDFRSGLCRNLVCSDL 252 (351)
Q Consensus 210 ~~~L~~~~~~~~~~----~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 252 (351)
++.|++.|+.+..+ +.+-....+..+++.+++|+++++|.|..
T Consensus 23 a~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 23 AKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp HHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--
T ss_pred HHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC
Confidence 45566778873322 32212333446899999999987777653
No 465
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=38.62 E-value=48 Score=24.41 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=26.9
Q ss_pred CCCcEEEEeC-chHHHHHHHHHHHhc------------CC-eEEEeccCCC
Q psy13286 192 QINQSIIFCN-STQRVELLAKKITEL------------GY-CCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~-~~~~~~~l~~~L~~~------------~~-~~~~~~~~~~ 228 (351)
+..++++||. +-..+...+..|+.. |+ .+..+.|++.
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 3567889996 666777788888764 44 6788888764
No 466
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=38.56 E-value=79 Score=26.81 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=28.7
Q ss_pred HHHHHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhcCC
Q psy13286 181 VHCLNTLFSKL-QINQSIIFCNSTQRVELLAKKITELGY 218 (351)
Q Consensus 181 ~~~l~~~l~~~-~~~~~lIf~~~~~~~~~l~~~L~~~~~ 218 (351)
.+.+..+.... +++...+|+++.+++++..+.|++.|+
T Consensus 175 W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 175 WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 44455555443 357899999999999999999988743
No 467
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=38.19 E-value=55 Score=34.87 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=39.1
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHH
Q psy13286 96 MDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEK 149 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 149 (351)
+...-+.|+||+|..++......+..++..+....|+|+.|- .+.+......
T Consensus 1086 ~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvITh--r~~~m~~ad~ 1137 (1163)
T COG1196 1086 YRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITH--RKGTMEAADR 1137 (1163)
T ss_pred hCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEc--ChHHHHHHHH
Confidence 345568999999999998777778888888889999999865 3444444443
No 468
>PRK12377 putative replication protein; Provisional
Probab=37.98 E-value=2.5e+02 Score=23.81 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=33.2
Q ss_pred CCcEEEEccHHHHHHHhc----c------CcCCCCccEEEEcccccccCcchH-HHHHHHHHhC-CCCCcEEEEEe
Q psy13286 74 KVHLIIATPGRILDLMDK----Q------VANMDHCKILVLDEADKLLSQDFK-GMLDHVISIL-PHERQILLYSA 137 (351)
Q Consensus 74 ~~~Ilv~Tp~~l~~~l~~----~------~~~~~~~~lvViDE~h~~~~~~~~-~~~~~~~~~~-~~~~~~i~~Sa 137 (351)
+..+++.|...+...+.. . .-.+.+.++||+||++......+. ..+..++... .....+++.|-
T Consensus 129 g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 129 GRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 455665555555454432 1 012578899999999754333222 2333344333 33344555544
No 469
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.51 E-value=32 Score=31.08 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=23.4
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
....++|+||+|.+....+.. +...+...+....+++.|
T Consensus 118 ~~~kviIIDEa~~l~~~a~na-LLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNA-LLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHHHH-HHHHHhcCCCCeEEEEEc
Confidence 456899999999876544433 333444444454455443
No 470
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=37.45 E-value=1.6e+02 Score=27.90 Aligned_cols=30 Identities=17% Similarity=0.057 Sum_probs=25.0
Q ss_pred cCCCCCceEEEEcCCHHHHHHHHHHHHHHH
Q psy13286 19 PAKITSKATLIIVPTRELALQTSQICIELA 48 (351)
Q Consensus 19 ~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 48 (351)
...+..-++++-+-|+.|+.++.+...+|+
T Consensus 201 h~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 201 HSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred hcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 344445789999999999999999988887
No 471
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=36.51 E-value=1.3e+02 Score=24.81 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhcc-CcCCCCccEEEEcccc
Q psy13286 34 RELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQ-VANMDHCKILVLDEAD 108 (351)
Q Consensus 34 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~lvViDE~h 108 (351)
..++..+.+.+++.....+.-...+.||... ..+.+.+.+. .++.+++.++-+||-.
T Consensus 5 ~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp------------------~~~y~~L~~~~~i~w~~v~~f~~DEr~ 62 (219)
T cd01400 5 EALADRIAEALAAAIAKRGRFSLALSGGSTP------------------KPLYELLAAAPALDWSKVHVFLGDERC 62 (219)
T ss_pred HHHHHHHHHHHHHHHHhcCeEEEEECCCccH------------------HHHHHHhccccCCCCceEEEEEeeccc
Confidence 3456666666666555455556666666643 3344444443 3677899999999955
No 472
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=36.39 E-value=51 Score=32.56 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=25.2
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 96 MDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
..+.+++||||+|.+....+. .+.+.+...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A~N-ALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSAFN-AMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHHHH-HHHHHHHhCCCCcEEEEEe
Confidence 356789999999977654433 3444555555555555554
No 473
>PRK04841 transcriptional regulator MalT; Provisional
Probab=36.19 E-value=47 Score=34.10 Aligned_cols=43 Identities=14% Similarity=0.312 Sum_probs=33.7
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCc
Q psy13286 98 HCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFP 140 (351)
Q Consensus 98 ~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 140 (351)
.--++|+|++|.+.+......+..++...+....+++.|-+.+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 3358999999988666666778888888888888888887643
No 474
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.01 E-value=2e+02 Score=28.25 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=25.0
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEee
Q psy13286 96 MDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSAT 138 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 138 (351)
+....++||||+|.+....+ ..+...+...+....+| +.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a~-naLLK~LEepp~~tifI-L~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAAF-NAFLKTLEEPPSYAIFI-LATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHHH-HHHHHHHhCCCCCeEEE-EEeC
Confidence 46778999999998765433 33445555544444444 4444
No 475
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=35.91 E-value=3.1e+02 Score=24.98 Aligned_cols=71 Identities=6% Similarity=0.099 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhCCCCcEEEEeCc----hHHHHHHHHHHHhcCCeEEEeccC---CCHHHHHHHHHHhhcCCccEEEEe
Q psy13286 180 KVHCLNTLFSKLQINQSIIFCNS----TQRVELLAKKITELGYCCYYIHAR---MAQAHRNRVFHDFRSGLCRNLVCS 250 (351)
Q Consensus 180 k~~~l~~~l~~~~~~~~lIf~~~----~~~~~~l~~~L~~~~~~~~~~~~~---~~~~~r~~~~~~f~~g~~~ilv~T 250 (351)
....+...++....++++|.+.. .....++.+.|++.++.+..+.+- -+.+.-.+..+.++..+.+++|+-
T Consensus 18 ~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~Iiai 95 (383)
T PRK09860 18 SLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISL 95 (383)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEe
Confidence 34444555555443455555432 123446666666666665555442 334445556666666666666653
No 476
>PRK06904 replicative DNA helicase; Validated
Probab=35.80 E-value=62 Score=30.50 Aligned_cols=15 Identities=7% Similarity=0.169 Sum_probs=12.0
Q ss_pred CccEEEEcccccccC
Q psy13286 98 HCKILVLDEADKLLS 112 (351)
Q Consensus 98 ~~~lvViDE~h~~~~ 112 (351)
.+++||||=.+.+..
T Consensus 334 ~~~lvvIDYLqli~~ 348 (472)
T PRK06904 334 GLSLIMVDYLQLMRA 348 (472)
T ss_pred CCCEEEEecHHhcCC
Confidence 578999998887653
No 477
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=35.76 E-value=59 Score=30.90 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=16.1
Q ss_pred CCCccEEEEcccccccCcchHH
Q psy13286 96 MDHCKILVLDEADKLLSQDFKG 117 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~ 117 (351)
..+..++||||+|.+....+..
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~na 147 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNA 147 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHH
Confidence 3567899999999876554443
No 478
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=35.70 E-value=84 Score=25.39 Aligned_cols=52 Identities=12% Similarity=0.257 Sum_probs=33.2
Q ss_pred CCccEEEEcccccccCcchH--HHHHHHHHhCCCCCcEEEEEeeCcchHHHHHH
Q psy13286 97 DHCKILVLDEADKLLSQDFK--GMLDHVISILPHERQILLYSATFPLTVKNFME 148 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~--~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~ 148 (351)
..+++||+||.-..+..++- +.+..++...|....+|+..-..++.+.+.+.
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHH
Confidence 47899999999877665533 45566666666655555555445555554443
No 479
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.65 E-value=51 Score=33.61 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=24.4
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEE
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLY 135 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 135 (351)
.++.++||||+|+|....+. .+.+++...+....+++.
T Consensus 118 gk~KViIIDEAh~LT~eAqN-ALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFN-ALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHHHH-HHHHHHhccCCCeEEEEE
Confidence 46789999999987554433 344455555555555554
No 480
>KOG0336|consensus
Probab=35.50 E-value=1.8e+02 Score=26.67 Aligned_cols=57 Identities=5% Similarity=0.116 Sum_probs=37.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHh---cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 191 LQINQSIIFCNSTQRVELLAKKITE---LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 191 ~~~~~~lIf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
..+-.+||+.++++-+..+.-...+ .|....+++|+-++.+ .+++++.| +.+++||+
T Consensus 292 r~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e---qie~lkrg-veiiiatP 351 (629)
T KOG0336|consen 292 RNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE---QIEDLKRG-VEIIIATP 351 (629)
T ss_pred cCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh---HHHHHhcC-ceEEeeCC
Confidence 3455789999999887766544433 4666777777766544 34444444 67777876
No 481
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=35.44 E-value=39 Score=32.85 Aligned_cols=40 Identities=18% Similarity=0.319 Sum_probs=26.1
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 96 MDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
+...+++||||+|.+....+. .+.+.+...+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~n-aLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAFN-ALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHHHH-HHHHHHHhCCCCeEEEEEe
Confidence 456789999999988655443 3444455555556566554
No 482
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=35.36 E-value=1.5e+02 Score=26.66 Aligned_cols=48 Identities=13% Similarity=0.186 Sum_probs=36.1
Q ss_pred CCCcEEEEeC-chHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhh
Q psy13286 192 QINQSIIFCN-STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFR 240 (351)
Q Consensus 192 ~~~~~lIf~~-~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 240 (351)
++.+++|||. +-..+..++..|...|+.+..+.|++..- |....+.+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~aw-r~~~~~~~~ 135 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAY-RRFVIDTLE 135 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHH-HHhhHHHHh
Confidence 4678999995 54667888899999999999999998654 455555554
No 483
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=35.30 E-value=1.6e+02 Score=20.66 Aligned_cols=47 Identities=9% Similarity=0.118 Sum_probs=32.0
Q ss_pred CCCCcEEEEeC------chHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHH
Q psy13286 191 LQINQSIIFCN------STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFH 237 (351)
Q Consensus 191 ~~~~~~lIf~~------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 237 (351)
....+++||.. ...-|.++.+.|...++....+.=....+.+.++.+
T Consensus 9 i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~ 61 (97)
T TIGR00365 9 IKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKE 61 (97)
T ss_pred hccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence 34578999974 456777888899888887666654444555555444
No 484
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=35.27 E-value=53 Score=31.41 Aligned_cols=40 Identities=25% Similarity=0.397 Sum_probs=26.7
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 96 MDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
.....++||||+|++....+. .+...+...+....+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A~N-ALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEAFN-ALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHHHH-HHHHHHhhcCCceEEEEEE
Confidence 357789999999987655433 4455555556666666555
No 485
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=35.27 E-value=2.1e+02 Score=29.00 Aligned_cols=58 Identities=9% Similarity=0.043 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhCCCCcEEEEeCchH----HHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHH
Q psy13286 180 KVHCLNTLFSKLQINQSIIFCNSTQ----RVELLAKKITELGYCCYYIHARMAQAHRNRVFH 237 (351)
Q Consensus 180 k~~~l~~~l~~~~~~~~lIf~~~~~----~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 237 (351)
....+...+....+.++.|.+++.- +++.+...+...|+.+.++.++++..+|.....
T Consensus 108 LvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y~ 169 (796)
T PRK12906 108 LTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAYN 169 (796)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHhc
Confidence 3556666777788888999999854 555666667778999999999999988876653
No 486
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=35.10 E-value=69 Score=28.87 Aligned_cols=113 Identities=17% Similarity=0.299 Sum_probs=66.2
Q ss_pred HHHHHHHHhhCCCCcEEEEeC---------chHHHHHHHHHHHhcCCeEE--EeccCCCHHH-HHHHHHHhhcCCccEEE
Q psy13286 181 VHCLNTLFSKLQINQSIIFCN---------STQRVELLAKKITELGYCCY--YIHARMAQAH-RNRVFHDFRSGLCRNLV 248 (351)
Q Consensus 181 ~~~l~~~l~~~~~~~~lIf~~---------~~~~~~~l~~~L~~~~~~~~--~~~~~~~~~~-r~~~~~~f~~g~~~ilv 248 (351)
++.|...+.... .+.+|.|+ ++++..++.+...+.+..+. .+|.++.-.. +---......+-.+..+
T Consensus 147 ~~~LE~~~~~~~-vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~i 225 (388)
T COG1168 147 FDALEKAFVDER-VKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSI 225 (388)
T ss_pred HHHHHHHHhcCC-ccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceE
Confidence 455555554433 46888885 67888888888888776653 4555543221 11111112222234455
Q ss_pred EeCcCCCCCCCCCCCE-EEEecCCCChhhHhhhccccccCCCceeEE
Q psy13286 249 CSDLFTRGIDVQAVNV-VINFDFPKMAETYLHRIGRSGRYGHLGIAI 294 (351)
Q Consensus 249 ~T~~~~~G~di~~~~~-Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i 294 (351)
++...+.++|++++.+ .+...-+..-..|+.|+-|.++.+.+..++
T Consensus 226 t~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~ 272 (388)
T COG1168 226 TLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGI 272 (388)
T ss_pred EEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHH
Confidence 5556678899998764 333444544578888888877776654444
No 487
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=34.98 E-value=3e+02 Score=23.86 Aligned_cols=67 Identities=12% Similarity=0.028 Sum_probs=52.7
Q ss_pred cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCcc
Q psy13286 179 QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCR 245 (351)
Q Consensus 179 ~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 245 (351)
.-++.+.+.+++..-.-++||++-.--+..+.+.+..--..+.+++.+.|..+-.++.+..+.....
T Consensus 52 PVf~tV~EA~~~~~a~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~ 118 (293)
T COG0074 52 PVFNTVEEAVKETGANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTR 118 (293)
T ss_pred cHHHHHHHHHHhhCCCEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCCE
Confidence 3466677777777667799999999999988888876556778999999998888888877765533
No 488
>PRK04132 replication factor C small subunit; Provisional
Probab=34.91 E-value=93 Score=31.69 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=25.9
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEe
Q psy13286 98 HCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSA 137 (351)
Q Consensus 98 ~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 137 (351)
++.++|+||+|.+... -...+..++...+....+++.+.
T Consensus 630 ~~KVvIIDEaD~Lt~~-AQnALLk~lEep~~~~~FILi~N 668 (846)
T PRK04132 630 SFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCN 668 (846)
T ss_pred CCEEEEEECcccCCHH-HHHHHHHHhhCCCCCeEEEEEeC
Confidence 5689999999987543 34456666666656665555533
No 489
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=34.73 E-value=1.3e+02 Score=24.43 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccc
Q psy13286 34 RELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEAD 108 (351)
Q Consensus 34 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h 108 (351)
.++++.+.+.+.+.....+.-++.+.||......... |.+... ..++.+++.++.+||-.
T Consensus 3 ~~~a~~i~~~i~~~i~~~~~~~i~LsgGstp~~~y~~--------------L~~~~~-~~i~w~~v~~~~~DEr~ 62 (199)
T PF01182_consen 3 QAVAEAIAEAIEEAIAERGRAVIALSGGSTPKPLYQE--------------LAKLHK-ERIDWSRVHFFNVDERV 62 (199)
T ss_dssp HHHHHHHHHHHHHHHHHCSSEEEEE--SCTHHHHHHH--------------HHHHHH-TCSCGGGEEEEESEEES
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH--------------Hhhhcc-ccCChhHeEEEeCcccc
Confidence 3566666777777666666667777777754433222 333332 35677899999999987
No 490
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=34.45 E-value=67 Score=27.36 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=13.1
Q ss_pred CCCccEEEEcccccccC
Q psy13286 96 MDHCKILVLDEADKLLS 112 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~ 112 (351)
+.+++++|+||.-....
T Consensus 165 l~~~dlLIiDDlG~~~~ 181 (254)
T COG1484 165 LKKVDLLIIDDIGYEPF 181 (254)
T ss_pred hhcCCEEEEecccCccC
Confidence 57889999999875433
No 491
>PF12846 AAA_10: AAA-like domain
Probab=34.12 E-value=76 Score=27.28 Aligned_cols=43 Identities=26% Similarity=0.304 Sum_probs=25.1
Q ss_pred CCccEEEEcccccccCc-chHHHHHHHHHhCCC-CCcEEEEEeeC
Q psy13286 97 DHCKILVLDEADKLLSQ-DFKGMLDHVISILPH-ERQILLYSATF 139 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~-~~~~~~~~~~~~~~~-~~~~i~~SaT~ 139 (351)
....++++||+|.+... .....+..+.+...+ ...+++.|.++
T Consensus 219 ~~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~Rk~g~~~~l~tQ~~ 263 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNPSGAEFLDELLREGRKYGVGLILATQSP 263 (304)
T ss_pred CceEEEEeCCccccccccchhhhhhHHHHHHHhcCCEEEEeeCCH
Confidence 45568899999998886 233344444444333 33445555544
No 492
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.09 E-value=1.6e+02 Score=28.90 Aligned_cols=40 Identities=13% Similarity=0.285 Sum_probs=23.5
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 96 MDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
+...+++||||+|.+....+. .+...+..-+...-+|+.+
T Consensus 125 ~~~~KVvIIdEad~Lt~~a~n-aLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAAFN-AFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHHHH-HHHHHHhCCCCCeEEEEEe
Confidence 456789999999987654432 3334444444444444444
No 493
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.85 E-value=58 Score=31.79 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=14.1
Q ss_pred CCccEEEEcccccccCcc
Q psy13286 97 DHCKILVLDEADKLLSQD 114 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~ 114 (351)
....++||||+|.+....
T Consensus 118 g~~kVIIIDEad~Lt~~a 135 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREA 135 (624)
T ss_pred CCceEEEEEChHhCCHHH
Confidence 566899999999875444
No 494
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=33.78 E-value=1.7e+02 Score=24.47 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccc
Q psy13286 38 LQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEAD 108 (351)
Q Consensus 38 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h 108 (351)
..+.+.+++.....+.-.+.+.||.. |..+.+.|....++.+++.++-+||--
T Consensus 14 ~~i~~~i~~~i~~~~~~~lalsGGst------------------p~~~y~~L~~~~i~w~~v~~f~~DER~ 66 (233)
T TIGR01198 14 ERIATKLQTALAERGQFSLALSGGRS------------------PIALLEALAAQPLDWSRIHLFLGDERY 66 (233)
T ss_pred HHHHHHHHHHHHhcCcEEEEECCCcc------------------HHHHHHHHhhCCCCcceEEEEEecccc
Confidence 33333343333334455566666664 444555554445677899999999954
No 495
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=33.67 E-value=49 Score=23.34 Aligned_cols=37 Identities=14% Similarity=0.299 Sum_probs=30.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCeEE-EeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYCCY-YIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~ 228 (351)
...+.+++|.+=......+..|+..|+... .+.|++.
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~ 97 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGID 97 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHH
Confidence 356789999999999999999999988776 6666654
No 496
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=33.55 E-value=50 Score=24.12 Aligned_cols=48 Identities=21% Similarity=0.202 Sum_probs=33.6
Q ss_pred eccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCC------CCEEEEecC
Q psy13286 223 IHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQA------VNVVINFDF 270 (351)
Q Consensus 223 ~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~------~~~Vi~~~~ 270 (351)
-.|.-.-.-..++++...+|++.+.|.|.-=.-++|++. -+.||.||-
T Consensus 54 asGrrkLspt~emi~~l~~geIel~VLttqpDIai~l~~kVldnEnRYViDFD~ 107 (144)
T PF10657_consen 54 ASGRRKLSPTPEMIDKLISGEIELFVLTTQPDIAINLQQKVLDNENRYVIDFDK 107 (144)
T ss_pred CCCccccCCcHHHHHHHhcCceEEEEEccCCCeeechhhhhhcccceEEEeccC
Confidence 334333333467889999999999999987777888752 246777774
No 497
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=33.43 E-value=1.3e+02 Score=19.29 Aligned_cols=44 Identities=11% Similarity=0.002 Sum_probs=31.2
Q ss_pred EEEEe-CchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHh
Q psy13286 196 SIIFC-NSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDF 239 (351)
Q Consensus 196 ~lIf~-~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 239 (351)
+.+|. +....+..+...|++.++....++-....+.+.++.+..
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~ 46 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRS 46 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence 44555 456788888999999998888777776666666555444
No 498
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=33.27 E-value=2e+02 Score=31.00 Aligned_cols=73 Identities=10% Similarity=0.083 Sum_probs=49.6
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHh--CCCcEEEEccHHHHHHHhccCcCCCCccE
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIY--QKVHLIIATPGRILDLMDKQVANMDHCKI 101 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~l 101 (351)
.+.+||.+|++.-+....+.+++.. .....+..++|+.+..++..... ....|+|+|. +. ...+++..+++
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~-~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATN--IA----EtSITIpgI~y 358 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLN-LRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATN--VA----ETSLTVPGIKY 358 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcC-CCcceEeecccCCCHHHHHHHhcccCCeeEEEecc--HH----hhccccCcceE
Confidence 3689999999999988888776542 12345778899887655544332 2467999996 22 22456778776
Q ss_pred EE
Q psy13286 102 LV 103 (351)
Q Consensus 102 vV 103 (351)
||
T Consensus 359 VI 360 (1294)
T PRK11131 359 VI 360 (1294)
T ss_pred EE
Confidence 66
No 499
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=33.17 E-value=2.7e+02 Score=25.97 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=32.1
Q ss_pred CCccEEEEcccccccC-cchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHh
Q psy13286 97 DHCKILVLDEADKLLS-QDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKH 150 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~ 150 (351)
..+++||+|=+-++.. ...-..+..+.....+..-++.+.|+........+..+
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f 235 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTF 235 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHH
Confidence 4568899998876543 23344555555555444446777777665555555444
No 500
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=32.92 E-value=2.3e+02 Score=27.51 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=15.4
Q ss_pred CCCccEEEEcccccccCcch
Q psy13286 96 MDHCKILVLDEADKLLSQDF 115 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~ 115 (351)
..+.+++||||+|.+....+
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~ 136 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAF 136 (563)
T ss_pred cCCCEEEEEEChhhcCHHHH
Confidence 46778999999998765443
Done!