Query psy13286
Match_columns 351
No_of_seqs 155 out of 1871
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 15:35:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.1E-53 1.1E-57 388.8 34.3 324 1-325 97-433 (434)
2 1s2m_A Putative ATP-dependent 100.0 7.7E-52 2.6E-56 376.9 36.9 327 1-328 62-393 (400)
3 2j0s_A ATP-dependent RNA helic 100.0 1.6E-51 5.6E-56 376.0 32.3 323 1-324 78-407 (410)
4 2i4i_A ATP-dependent RNA helic 100.0 1.4E-50 4.8E-55 370.6 30.9 330 1-330 56-413 (417)
5 3eiq_A Eukaryotic initiation f 100.0 1.7E-50 5.8E-55 369.7 29.4 325 1-326 81-413 (414)
6 1xti_A Probable ATP-dependent 100.0 3.2E-49 1.1E-53 358.6 36.4 326 1-327 49-385 (391)
7 1hv8_A Putative ATP-dependent 100.0 1.3E-47 4.3E-52 345.0 34.5 313 1-320 48-365 (367)
8 3pey_A ATP-dependent RNA helic 100.0 2.5E-47 8.5E-52 346.5 31.9 318 1-323 48-381 (395)
9 3fht_A ATP-dependent RNA helic 100.0 2.4E-47 8.1E-52 348.6 31.3 321 1-325 68-405 (412)
10 1fuu_A Yeast initiation factor 100.0 7.6E-50 2.6E-54 363.0 14.4 323 1-325 62-391 (394)
11 3sqw_A ATP-dependent RNA helic 100.0 2.6E-46 8.8E-51 355.2 31.0 319 1-319 64-417 (579)
12 3i5x_A ATP-dependent RNA helic 100.0 6.3E-46 2.2E-50 352.2 30.9 319 1-319 115-468 (563)
13 2z0m_A 337AA long hypothetical 100.0 1.1E-45 3.8E-50 328.6 27.9 297 1-314 35-336 (337)
14 3fmp_B ATP-dependent RNA helic 100.0 1.3E-47 4.5E-52 356.7 13.9 318 1-322 135-469 (479)
15 3fho_A ATP-dependent RNA helic 100.0 3.2E-46 1.1E-50 348.6 20.4 319 1-324 162-495 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 1.1E-43 3.8E-48 334.7 29.7 296 1-308 63-382 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 1.2E-42 4.1E-47 324.5 28.3 294 1-310 44-353 (523)
18 3oiy_A Reverse gyrase helicase 100.0 6.6E-44 2.2E-48 325.9 19.2 290 1-313 40-376 (414)
19 4a2p_A RIG-I, retinoic acid in 100.0 1.9E-40 6.4E-45 314.4 26.8 301 1-303 26-511 (556)
20 3tbk_A RIG-I helicase domain; 100.0 2.4E-40 8.3E-45 313.5 24.8 305 1-308 23-515 (555)
21 2ykg_A Probable ATP-dependent 100.0 4E-41 1.4E-45 326.9 18.1 319 1-321 32-541 (696)
22 4a2q_A RIG-I, retinoic acid in 100.0 4.2E-39 1.4E-43 315.8 27.1 300 1-302 267-751 (797)
23 3l9o_A ATP-dependent RNA helic 100.0 1E-39 3.5E-44 326.0 22.9 304 1-323 203-618 (1108)
24 1wp9_A ATP-dependent RNA helic 100.0 2.1E-39 7.1E-44 302.1 23.3 296 1-301 27-476 (494)
25 2xgj_A ATP-dependent RNA helic 100.0 5.7E-39 1.9E-43 318.0 27.1 292 1-308 105-508 (1010)
26 4ddu_A Reverse gyrase; topoiso 100.0 4.6E-40 1.6E-44 328.4 19.4 290 1-313 97-503 (1104)
27 2va8_A SSO2462, SKI2-type heli 100.0 2E-38 7E-43 308.1 26.8 287 1-302 50-410 (715)
28 2zj8_A DNA helicase, putative 100.0 1E-38 3.6E-43 310.1 24.4 306 1-322 43-407 (720)
29 2p6r_A Afuhel308 helicase; pro 100.0 2.2E-38 7.4E-43 307.1 24.8 286 1-301 44-389 (702)
30 4a2w_A RIG-I, retinoic acid in 100.0 4.3E-38 1.5E-42 311.9 27.1 300 1-302 267-751 (936)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 1.2E-39 4.1E-44 325.5 15.8 293 1-314 75-468 (1054)
32 1tf5_A Preprotein translocase 100.0 6.9E-38 2.4E-42 296.3 22.5 293 1-301 100-546 (844)
33 4a4z_A Antiviral helicase SKI2 100.0 1.4E-37 4.8E-42 308.1 20.9 292 1-308 58-502 (997)
34 4gl2_A Interferon-induced heli 100.0 5.1E-38 1.7E-42 305.3 16.3 287 1-288 26-509 (699)
35 2fsf_A Preprotein translocase 100.0 1.1E-36 3.9E-41 287.3 21.9 293 2-302 92-585 (853)
36 1gm5_A RECG; helicase, replica 100.0 1.3E-37 4.6E-42 299.3 14.4 282 1-301 393-698 (780)
37 1yks_A Genome polyprotein [con 100.0 4.1E-39 1.4E-43 294.6 3.5 281 1-327 12-329 (440)
38 2eyq_A TRCF, transcription-rep 100.0 3.8E-36 1.3E-40 302.0 24.9 282 1-300 628-922 (1151)
39 4f92_B U5 small nuclear ribonu 100.0 1.4E-35 4.8E-40 305.8 29.5 301 1-308 946-1316(1724)
40 4f92_B U5 small nuclear ribonu 100.0 1.6E-36 5.3E-41 312.9 22.4 302 1-308 99-481 (1724)
41 1nkt_A Preprotein translocase 100.0 1.9E-35 6.6E-40 279.3 25.6 294 1-302 128-619 (922)
42 2whx_A Serine protease/ntpase/ 100.0 1.4E-36 4.9E-41 287.1 16.0 290 1-328 190-509 (618)
43 2oca_A DAR protein, ATP-depend 100.0 5.8E-37 2E-41 287.3 9.9 284 1-298 132-453 (510)
44 3o8b_A HCV NS3 protease/helica 100.0 1.8E-35 6.1E-40 277.4 17.8 269 1-318 236-536 (666)
45 2jlq_A Serine protease subunit 100.0 2.5E-35 8.6E-40 270.8 17.8 290 1-328 23-342 (451)
46 2wv9_A Flavivirin protease NS2 100.0 1E-36 3.5E-41 289.8 6.7 285 1-324 245-560 (673)
47 2fwr_A DNA repair protein RAD2 100.0 5E-36 1.7E-40 278.3 10.8 271 1-300 112-454 (472)
48 2v6i_A RNA helicase; membrane, 100.0 1.9E-34 6.6E-39 263.2 18.2 259 1-297 6-288 (431)
49 2z83_A Helicase/nucleoside tri 100.0 6E-35 2E-39 268.7 11.1 258 1-300 25-313 (459)
50 2xau_A PRE-mRNA-splicing facto 100.0 2.6E-34 9E-39 278.2 14.0 288 1-302 113-445 (773)
51 3rc3_A ATP-dependent RNA helic 100.0 6.9E-33 2.4E-37 262.9 21.5 281 1-316 159-460 (677)
52 3h1t_A Type I site-specific re 100.0 3.6E-33 1.2E-37 265.7 15.8 285 1-300 202-558 (590)
53 3dmq_A RNA polymerase-associat 100.0 1.6E-32 5.5E-37 272.4 16.1 135 178-312 488-625 (968)
54 3jux_A Protein translocase sub 100.0 3.9E-30 1.3E-34 238.3 29.5 293 2-301 93-588 (822)
55 2hjv_A ATP-dependent RNA helic 100.0 1.4E-30 4.7E-35 206.2 20.0 159 162-320 4-162 (163)
56 1t5i_A C_terminal domain of A 100.0 1.5E-30 5.2E-35 207.6 18.5 163 165-327 3-166 (172)
57 1z63_A Helicase of the SNF2/RA 100.0 9E-31 3.1E-35 244.7 19.3 284 1-300 60-453 (500)
58 1fuk_A Eukaryotic initiation f 100.0 3.3E-30 1.1E-34 204.6 19.1 159 167-325 3-162 (165)
59 2rb4_A ATP-dependent RNA helic 100.0 6.6E-30 2.3E-34 204.8 19.0 160 164-323 4-170 (175)
60 2jgn_A DBX, DDX3, ATP-dependen 100.0 6E-30 2.1E-34 206.4 16.1 166 163-328 15-181 (185)
61 2p6n_A ATP-dependent RNA helic 100.0 8.3E-30 2.9E-34 206.4 16.5 178 147-325 8-187 (191)
62 3eaq_A Heat resistant RNA depe 100.0 7.3E-29 2.5E-33 204.6 18.8 159 168-326 6-164 (212)
63 3mwy_W Chromo domain-containin 100.0 1.3E-28 4.5E-33 241.0 19.9 308 2-317 260-703 (800)
64 1z3i_X Similar to RAD54-like; 100.0 2.3E-27 8E-32 226.7 26.3 305 2-313 84-543 (644)
65 3i32_A Heat resistant RNA depe 100.0 4.9E-28 1.7E-32 208.7 17.8 159 168-326 3-161 (300)
66 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 6.5E-28 2.2E-32 238.0 19.6 287 1-299 304-708 (1038)
67 2yjt_D ATP-dependent RNA helic 99.9 2E-29 6.7E-34 201.0 0.0 154 167-320 3-157 (170)
68 3fe2_A Probable ATP-dependent 99.9 7.5E-26 2.6E-30 191.1 14.9 160 1-160 70-238 (242)
69 2d7d_A Uvrabc system protein B 99.9 3.9E-25 1.3E-29 211.1 19.9 235 80-329 320-594 (661)
70 1c4o_A DNA nucleotide excision 99.9 1.1E-24 3.9E-29 208.0 20.4 136 192-328 438-587 (664)
71 1vec_A ATP-dependent RNA helic 99.9 1.4E-24 4.8E-29 178.8 16.9 156 1-157 44-205 (206)
72 3iuy_A Probable ATP-dependent 99.9 1E-24 3.6E-29 182.5 14.0 157 1-158 61-227 (228)
73 3ber_A Probable ATP-dependent 99.9 2.4E-24 8.3E-29 182.3 15.1 158 1-159 84-247 (249)
74 1q0u_A Bstdead; DEAD protein, 99.9 8.6E-25 3E-29 181.8 12.0 159 1-160 45-212 (219)
75 1wrb_A DJVLGB; RNA helicase, D 99.9 2.6E-24 8.9E-29 182.9 15.1 161 1-161 64-241 (253)
76 3bor_A Human initiation factor 99.9 1.4E-24 4.8E-29 182.6 13.3 158 1-159 71-234 (237)
77 2oxc_A Probable ATP-dependent 99.9 4.5E-24 1.5E-28 178.7 15.0 157 1-159 65-228 (230)
78 3ly5_A ATP-dependent RNA helic 99.9 2.3E-24 7.9E-29 183.9 13.2 155 1-155 95-258 (262)
79 1qde_A EIF4A, translation init 99.9 4.9E-24 1.7E-28 177.9 14.3 158 1-160 55-217 (224)
80 2ipc_A Preprotein translocase 99.9 5.4E-23 1.8E-27 194.3 21.9 292 2-302 97-700 (997)
81 3fmo_B ATP-dependent RNA helic 99.9 5.3E-24 1.8E-28 184.9 13.0 156 1-160 135-298 (300)
82 2pl3_A Probable ATP-dependent 99.9 9.5E-24 3.2E-28 177.6 13.9 159 1-160 66-233 (236)
83 2gxq_A Heat resistant RNA depe 99.9 1.4E-23 4.9E-28 172.9 14.6 157 1-159 42-205 (207)
84 1t6n_A Probable ATP-dependent 99.9 1.6E-23 5.6E-28 174.2 15.0 157 1-158 55-219 (220)
85 3dkp_A Probable ATP-dependent 99.9 3.1E-23 1.1E-27 175.4 11.0 161 1-161 70-242 (245)
86 1z5z_A Helicase of the SNF2/RA 99.8 1.3E-19 4.6E-24 154.3 13.0 136 175-310 92-236 (271)
87 2vl7_A XPD; helicase, unknown 99.7 2.3E-17 7.8E-22 154.5 10.7 109 185-300 377-521 (540)
88 3b6e_A Interferon-induced heli 99.7 5E-18 1.7E-22 140.5 4.7 137 1-138 52-216 (216)
89 3crv_A XPD/RAD3 related DNA he 99.7 1.7E-14 6E-19 135.5 25.1 282 1-300 26-531 (551)
90 1rif_A DAR protein, DNA helica 99.6 2.7E-16 9.1E-21 135.5 5.5 130 1-143 132-266 (282)
91 3llm_A ATP-dependent RNA helic 99.5 1.4E-14 4.8E-19 121.2 9.7 134 1-143 80-222 (235)
92 4a15_A XPD helicase, ATP-depen 99.5 2.5E-12 8.6E-17 121.9 20.2 111 185-300 441-584 (620)
93 2fz4_A DNA repair protein RAD2 99.5 1.4E-13 4.7E-18 115.1 8.2 116 1-141 112-230 (237)
94 3hgt_A HDA1 complex subunit 3; 97.9 0.00011 3.9E-09 62.7 12.2 119 177-300 107-237 (328)
95 1w36_D RECD, exodeoxyribonucle 97.2 0.00045 1.5E-08 65.4 6.7 123 1-138 168-298 (608)
96 1gm5_A RECG; helicase, replica 95.5 0.038 1.3E-06 53.7 8.6 80 192-271 416-500 (780)
97 4b3f_X DNA-binding protein smu 95.3 0.0048 1.6E-07 58.9 1.5 43 1-46 209-255 (646)
98 2gk6_A Regulator of nonsense t 95.1 0.066 2.2E-06 50.8 8.7 44 1-46 199-246 (624)
99 3oiy_A Reverse gyrase helicase 94.8 0.14 4.6E-06 45.8 9.4 80 191-270 62-148 (414)
100 3lfu_A DNA helicase II; SF1 he 94.7 0.73 2.5E-05 43.8 14.8 33 193-225 347-379 (647)
101 2xzl_A ATP-dependent helicase 94.2 0.15 5.1E-06 49.8 8.8 45 1-47 379-427 (802)
102 2wjy_A Regulator of nonsense t 94.0 0.13 4.3E-06 50.3 7.8 44 1-46 375-422 (800)
103 1t6n_A Probable ATP-dependent 92.9 0.34 1.2E-05 38.8 7.6 73 194-269 83-166 (220)
104 3vkw_A Replicase large subunit 92.8 0.17 5.8E-06 45.4 6.0 103 2-137 166-268 (446)
105 3upu_A ATP-dependent DNA helic 92.7 0.19 6.5E-06 45.7 6.4 38 95-136 125-162 (459)
106 2hjv_A ATP-dependent RNA helic 92.4 0.38 1.3E-05 36.7 6.9 73 25-107 36-112 (163)
107 3ber_A Probable ATP-dependent 92.3 1.1 3.8E-05 36.7 10.2 75 191-269 109-194 (249)
108 2eyq_A TRCF, transcription-rep 92.2 0.54 1.8E-05 47.9 9.5 79 191-269 650-733 (1151)
109 4ddu_A Reverse gyrase; topoiso 91.9 0.51 1.8E-05 47.8 8.8 80 191-270 119-205 (1104)
110 2p6n_A ATP-dependent RNA helic 91.9 1.2 3.9E-05 35.0 9.3 72 25-106 55-130 (191)
111 3e1s_A Exodeoxyribonuclease V, 91.8 0.29 9.8E-06 45.8 6.5 38 96-137 277-314 (574)
112 1fuk_A Eukaryotic initiation f 91.7 0.62 2.1E-05 35.5 7.4 74 24-107 30-107 (165)
113 1oyw_A RECQ helicase, ATP-depe 91.2 0.55 1.9E-05 43.4 7.7 59 193-251 65-123 (523)
114 2oxc_A Probable ATP-dependent 90.9 0.84 2.9E-05 36.9 7.9 73 192-269 91-174 (230)
115 2v1x_A ATP-dependent DNA helic 90.9 0.57 1.9E-05 44.0 7.6 59 193-251 84-144 (591)
116 2rb4_A ATP-dependent RNA helic 90.6 0.53 1.8E-05 36.3 6.1 72 24-105 34-109 (175)
117 3eaq_A Heat resistant RNA depe 90.5 1.4 4.8E-05 35.1 8.7 71 24-104 31-105 (212)
118 3fe2_A Probable ATP-dependent 90.3 1.5 5.1E-05 35.7 9.0 73 193-269 102-184 (242)
119 2jgn_A DBX, DDX3, ATP-dependen 89.9 0.41 1.4E-05 37.4 4.9 73 23-105 45-121 (185)
120 1t5i_A C_terminal domain of A 88.1 0.84 2.9E-05 35.1 5.5 72 25-106 32-107 (172)
121 3iuy_A Probable ATP-dependent 88.1 1.6 5.6E-05 35.0 7.5 74 192-269 93-175 (228)
122 3bor_A Human initiation factor 87.8 1.4 4.9E-05 35.6 7.1 75 192-269 97-181 (237)
123 1xti_A Probable ATP-dependent 87.7 2.7 9.1E-05 36.7 9.3 74 193-269 76-160 (391)
124 1vec_A ATP-dependent RNA helic 87.7 3 0.0001 32.7 8.7 73 193-269 71-154 (206)
125 2o0j_A Terminase, DNA packagin 86.5 2.2 7.5E-05 37.5 7.8 75 23-112 207-287 (385)
126 2gxq_A Heat resistant RNA depe 86.2 3.7 0.00013 32.1 8.6 74 192-269 71-152 (207)
127 2i4i_A ATP-dependent RNA helic 85.9 2.3 8E-05 37.5 8.0 72 23-104 275-350 (417)
128 1qde_A EIF4A, translation init 85.4 1.7 5.7E-05 34.8 6.1 73 192-269 81-163 (224)
129 2l82_A Designed protein OR32; 84.6 5.8 0.0002 27.2 7.4 51 196-246 5-55 (162)
130 3i32_A Heat resistant RNA depe 84.1 3.1 0.00011 35.2 7.4 73 24-106 28-104 (300)
131 1wrb_A DJVLGB; RNA helicase, D 83.6 4.6 0.00016 32.9 8.2 73 193-269 100-182 (253)
132 1c4o_A DNA nucleotide excision 83.3 1 3.4E-05 43.0 4.4 46 2-49 33-78 (664)
133 3e2i_A Thymidine kinase; Zn-bi 83.3 4.4 0.00015 32.3 7.4 104 8-123 12-125 (219)
134 3foj_A Uncharacterized protein 83.0 1.3 4.5E-05 30.3 3.9 37 192-228 55-91 (100)
135 3gk5_A Uncharacterized rhodane 82.7 1.3 4.3E-05 31.0 3.8 38 192-229 54-91 (108)
136 2v6i_A RNA helicase; membrane, 82.5 2.1 7.3E-05 38.3 6.1 54 24-82 171-225 (431)
137 1tf5_A Preprotein translocase 82.5 5 0.00017 39.0 8.8 59 187-251 118-180 (844)
138 3ly5_A ATP-dependent RNA helic 82.5 6 0.00021 32.5 8.5 74 192-269 125-209 (262)
139 2d7d_A Uvrabc system protein B 82.1 2.5 8.7E-05 40.2 6.7 79 23-111 444-526 (661)
140 3eme_A Rhodanese-like domain p 82.1 1.3 4.3E-05 30.6 3.5 37 192-228 55-91 (103)
141 1gku_B Reverse gyrase, TOP-RG; 81.8 3.7 0.00013 41.4 8.1 76 192-269 98-183 (1054)
142 3i5x_A ATP-dependent RNA helic 81.6 8.2 0.00028 35.7 9.9 79 23-108 338-420 (563)
143 3fmo_B ATP-dependent RNA helic 81.5 1.7 6E-05 36.7 4.9 70 193-269 162-243 (300)
144 1yks_A Genome polyprotein [con 81.0 2.2 7.6E-05 38.3 5.7 69 24-104 177-246 (440)
145 3sqw_A ATP-dependent RNA helic 80.9 8.9 0.00031 35.7 10.0 78 24-108 288-369 (579)
146 2fsf_A Preprotein translocase 80.6 5.3 0.00018 38.8 8.2 57 189-251 111-171 (853)
147 3pey_A ATP-dependent RNA helic 80.5 27 0.00093 30.1 13.0 76 24-109 243-322 (395)
148 2pl3_A Probable ATP-dependent 80.5 4.1 0.00014 32.8 6.7 73 192-269 96-179 (236)
149 1nkt_A Preprotein translocase 80.1 6.9 0.00024 38.3 8.8 60 186-251 145-208 (922)
150 1wv9_A Rhodanese homolog TT165 80.0 2.1 7.1E-05 28.9 4.0 35 194-228 54-88 (94)
151 1fuu_A Yeast initiation factor 79.5 7.6 0.00026 33.8 8.6 73 192-269 88-170 (394)
152 3fht_A ATP-dependent RNA helic 79.2 6.9 0.00024 34.3 8.3 72 25-106 267-342 (412)
153 1s2m_A Putative ATP-dependent 79.1 8.2 0.00028 33.7 8.7 72 24-105 258-333 (400)
154 2db3_A ATP-dependent RNA helic 78.8 7.9 0.00027 34.6 8.6 70 26-105 302-375 (434)
155 3iwh_A Rhodanese-like domain p 78.5 2 6.7E-05 29.8 3.5 36 193-228 56-91 (103)
156 2j0s_A ATP-dependent RNA helic 77.7 8 0.00027 33.9 8.2 72 25-106 277-352 (410)
157 3hix_A ALR3790 protein; rhodan 77.1 2.5 8.5E-05 29.3 3.8 38 192-229 51-89 (106)
158 1hv8_A Putative ATP-dependent 76.6 16 0.00054 31.2 9.7 73 192-269 73-155 (367)
159 1wp9_A ATP-dependent RNA helic 76.0 14 0.0005 32.8 9.6 74 192-270 51-134 (494)
160 2ipc_A Preprotein translocase 75.9 7.7 0.00026 38.1 7.7 60 186-251 113-176 (997)
161 3g5j_A Putative ATP/GTP bindin 75.4 4.5 0.00015 29.1 5.0 36 194-229 90-126 (134)
162 1q0u_A Bstdead; DEAD protein, 75.1 2.7 9.3E-05 33.4 4.0 73 193-269 72-158 (219)
163 2yjt_D ATP-dependent RNA helic 77.0 0.6 2E-05 35.8 0.0 73 24-106 30-106 (170)
164 3flh_A Uncharacterized protein 74.7 2.1 7.2E-05 30.7 2.9 37 193-229 71-109 (124)
165 3eiq_A Eukaryotic initiation f 74.6 12 0.00042 32.7 8.6 75 192-269 107-191 (414)
166 3nhv_A BH2092 protein; alpha-b 73.3 3.2 0.00011 30.7 3.7 37 193-229 72-110 (144)
167 2oca_A DAR protein, ATP-depend 72.6 44 0.0015 30.2 12.0 75 25-108 348-426 (510)
168 2jtq_A Phage shock protein E; 72.3 8.8 0.0003 25.0 5.4 36 192-228 40-76 (85)
169 2wv9_A Flavivirin protease NS2 71.7 4.5 0.00015 38.6 5.1 68 24-103 410-478 (673)
170 4a2q_A RIG-I, retinoic acid in 71.7 8.9 0.00031 37.3 7.4 73 193-269 296-379 (797)
171 1gmx_A GLPE protein; transfera 71.4 3.3 0.00011 28.7 3.3 38 192-229 57-95 (108)
172 3tbk_A RIG-I helicase domain; 71.1 7.7 0.00026 35.6 6.6 73 193-269 52-135 (555)
173 4a2p_A RIG-I, retinoic acid in 71.0 9.8 0.00033 34.9 7.3 74 193-270 55-139 (556)
174 3dkp_A Probable ATP-dependent 70.8 9.3 0.00032 30.8 6.4 74 193-269 98-183 (245)
175 2k0z_A Uncharacterized protein 70.6 5.7 0.0002 27.6 4.3 38 191-228 54-91 (110)
176 1qxn_A SUD, sulfide dehydrogen 70.2 3.5 0.00012 30.2 3.3 38 192-229 81-119 (137)
177 2fsx_A RV0390, COG0607: rhodan 69.8 4.7 0.00016 29.8 4.0 37 192-228 79-116 (148)
178 3bos_A Putative DNA replicatio 69.6 21 0.00071 28.3 8.2 72 42-113 41-119 (242)
179 1tq1_A AT5G66040, senescence-a 69.4 3.8 0.00013 29.5 3.3 38 192-229 81-119 (129)
180 2hhg_A Hypothetical protein RP 69.3 4.3 0.00015 29.6 3.6 38 192-229 85-123 (139)
181 2jlq_A Serine protease subunit 69.2 5.6 0.00019 35.8 5.1 68 24-103 188-256 (451)
182 3kl4_A SRP54, signal recogniti 68.7 25 0.00087 31.3 9.0 54 97-150 178-234 (433)
183 2j9r_A Thymidine kinase; TK1, 68.6 31 0.0011 27.3 8.6 14 98-111 101-114 (214)
184 2xau_A PRE-mRNA-splicing facto 68.2 19 0.00065 34.9 8.7 75 24-104 303-393 (773)
185 3cpe_A Terminase, DNA packagin 67.9 23 0.00078 33.1 9.1 74 24-112 208-287 (592)
186 3ilm_A ALR3790 protein; rhodan 67.2 5.4 0.00019 29.3 3.8 36 193-228 56-92 (141)
187 2whx_A Serine protease/ntpase/ 65.9 10 0.00035 35.7 6.2 68 24-103 355-423 (618)
188 3dmn_A Putative DNA helicase; 65.3 42 0.0014 25.4 11.7 64 193-271 61-124 (174)
189 3d1p_A Putative thiosulfate su 64.4 6 0.00021 28.8 3.6 37 192-228 90-127 (139)
190 2z83_A Helicase/nucleoside tri 63.9 5.7 0.00019 35.9 4.0 68 24-103 190-258 (459)
191 1vee_A Proline-rich protein fa 62.9 6.8 0.00023 28.4 3.6 37 192-228 73-110 (134)
192 1tvm_A PTS system, galactitol- 61.8 18 0.00062 25.3 5.5 56 25-84 22-79 (113)
193 3dm5_A SRP54, signal recogniti 61.1 49 0.0017 29.6 9.4 54 97-150 181-235 (443)
194 3m9w_A D-xylose-binding peripl 60.9 70 0.0024 26.4 12.7 40 179-218 173-212 (313)
195 3u61_B DNA polymerase accessor 60.5 29 0.001 29.2 7.8 40 97-136 104-143 (324)
196 3o8b_A HCV NS3 protease/helica 59.4 11 0.00038 35.7 5.1 67 23-103 395-461 (666)
197 2z0m_A 337AA long hypothetical 59.3 23 0.00079 29.7 6.9 72 193-269 56-137 (337)
198 2fz4_A DNA repair protein RAD2 58.7 30 0.001 27.7 7.2 59 179-251 120-179 (237)
199 3hjh_A Transcription-repair-co 57.3 12 0.00043 33.9 4.9 77 6-87 23-115 (483)
200 3czc_A RMPB; alpha/beta sandwi 57.0 29 0.00099 24.0 5.9 58 25-85 19-78 (110)
201 3ipz_A Monothiol glutaredoxin- 55.6 47 0.0016 22.8 7.1 48 191-238 15-68 (109)
202 4f67_A UPF0176 protein LPG2838 53.5 18 0.00062 29.8 4.9 46 184-229 172-218 (265)
203 2r2a_A Uncharacterized protein 53.4 8.9 0.0003 30.1 2.9 40 99-138 88-132 (199)
204 3tg1_B Dual specificity protei 53.2 10 0.00036 28.3 3.2 36 193-228 93-137 (158)
205 3i2v_A Adenylyltransferase and 52.1 14 0.00048 26.1 3.7 35 195-229 74-115 (127)
206 3h1t_A Type I site-specific re 51.5 38 0.0013 31.5 7.4 80 23-108 438-527 (590)
207 1sxj_E Activator 1 40 kDa subu 50.5 15 0.0005 31.5 4.2 42 97-139 133-174 (354)
208 2ykg_A Probable ATP-dependent 50.3 29 0.001 32.9 6.6 73 194-270 62-145 (696)
209 2kjq_A DNAA-related protein; s 50.2 6.5 0.00022 29.2 1.6 41 97-138 82-123 (149)
210 2b8t_A Thymidine kinase; deoxy 49.8 95 0.0033 24.6 9.5 34 77-111 69-102 (223)
211 4a2w_A RIG-I, retinoic acid in 49.8 18 0.00062 36.0 5.2 73 193-269 296-379 (936)
212 2orw_A Thymidine kinase; TMTK, 49.0 25 0.00085 27.0 4.9 26 98-124 76-101 (184)
213 3zyw_A Glutaredoxin-3; metal b 48.9 62 0.0021 22.3 6.6 47 192-238 14-66 (111)
214 3h75_A Periplasmic sugar-bindi 48.7 1.2E+02 0.0041 25.5 15.5 181 25-219 4-230 (350)
215 3hjh_A Transcription-repair-co 48.7 1.5E+02 0.0053 26.7 11.7 112 169-281 16-145 (483)
216 3b6e_A Interferon-induced heli 48.4 30 0.001 26.8 5.4 56 192-251 81-140 (216)
217 3rc3_A ATP-dependent RNA helic 48.1 71 0.0024 30.4 8.7 73 27-110 323-401 (677)
218 1uar_A Rhodanese; sulfurtransf 48.0 30 0.001 28.6 5.6 47 182-228 219-270 (285)
219 2fwr_A DNA repair protein RAD2 47.0 34 0.0011 30.6 6.2 59 179-251 120-179 (472)
220 2chg_A Replication factor C sm 46.2 42 0.0015 25.8 6.1 40 97-137 101-140 (226)
221 2eg4_A Probable thiosulfate su 46.2 19 0.00064 28.8 3.9 38 192-229 183-220 (230)
222 4gl2_A Interferon-induced heli 45.8 9.6 0.00033 36.3 2.4 75 24-104 400-488 (699)
223 3te6_A Regulatory protein SIR3 44.0 30 0.001 29.4 5.0 44 97-140 131-174 (318)
224 4fn4_A Short chain dehydrogena 43.9 1.2E+02 0.004 24.7 8.4 59 193-251 31-92 (254)
225 1urh_A 3-mercaptopyruvate sulf 43.8 21 0.00071 29.5 3.9 38 192-229 229-267 (280)
226 2yan_A Glutaredoxin-3; oxidore 42.9 74 0.0025 21.4 6.7 48 193-240 16-69 (105)
227 1urh_A 3-mercaptopyruvate sulf 42.1 25 0.00084 29.0 4.1 37 192-228 85-123 (280)
228 3hzu_A Thiosulfate sulfurtrans 42.0 39 0.0013 28.6 5.4 46 183-228 98-148 (318)
229 1l8q_A Chromosomal replication 41.5 22 0.00074 30.1 3.8 15 98-112 98-112 (324)
230 3h11_B Caspase-8; cell death, 41.2 52 0.0018 27.1 5.9 39 202-241 47-85 (271)
231 2zpa_A Uncharacterized protein 40.9 17 0.00058 34.4 3.2 37 96-140 253-289 (671)
232 2wci_A Glutaredoxin-4; redox-a 40.8 65 0.0022 23.2 5.8 55 182-239 26-86 (135)
233 2q5c_A NTRC family transcripti 40.3 1.3E+02 0.0043 23.3 8.3 121 194-325 5-129 (196)
234 1jr3_D DNA polymerase III, del 40.2 1.7E+02 0.0057 24.7 9.9 95 25-139 19-117 (343)
235 3co5_A Putative two-component 39.9 36 0.0012 24.6 4.4 39 100-139 77-116 (143)
236 1uaa_A REP helicase, protein ( 39.8 12 0.00042 35.5 2.1 59 1-59 19-85 (673)
237 3gx8_A Monothiol glutaredoxin- 39.7 95 0.0033 21.7 6.8 46 193-238 15-69 (121)
238 1e0c_A Rhodanese, sulfurtransf 39.4 40 0.0014 27.6 5.0 37 192-228 80-118 (271)
239 3syl_A Protein CBBX; photosynt 39.4 30 0.001 28.8 4.3 13 99-111 131-143 (309)
240 1e0c_A Rhodanese, sulfurtransf 39.0 31 0.0011 28.2 4.3 37 192-228 222-259 (271)
241 3lwd_A 6-phosphogluconolactona 37.7 72 0.0025 25.4 6.1 27 82-108 45-71 (226)
242 3l6u_A ABC-type sugar transpor 37.6 1.6E+02 0.0055 23.7 14.5 179 25-218 9-219 (293)
243 1u6t_A SH3 domain-binding glut 37.5 29 0.001 24.6 3.3 38 202-239 15-52 (121)
244 1g5t_A COB(I)alamin adenosyltr 37.1 33 0.0011 26.8 3.8 50 97-146 119-170 (196)
245 2orv_A Thymidine kinase; TP4A 37.0 1.4E+02 0.0049 23.9 7.6 15 97-111 89-103 (234)
246 3dmq_A RNA polymerase-associat 36.8 48 0.0016 33.1 5.9 76 24-108 503-584 (968)
247 2j6p_A SB(V)-AS(V) reductase; 36.8 60 0.002 23.8 5.2 36 194-229 68-112 (152)
248 3fmp_B ATP-dependent RNA helic 36.5 7.4 0.00025 35.2 0.0 69 25-103 334-406 (479)
249 1uar_A Rhodanese; sulfurtransf 36.1 37 0.0013 28.0 4.3 37 192-228 78-116 (285)
250 3l9o_A ATP-dependent RNA helic 35.8 54 0.0019 33.3 6.1 67 192-269 226-298 (1108)
251 1pjr_A PCRA; DNA repair, DNA r 35.8 23 0.00079 34.0 3.3 36 193-229 351-386 (724)
252 2h54_A Caspase-1; allosteric s 35.7 1.3E+02 0.0044 22.9 6.9 47 194-241 44-101 (178)
253 2q5c_A NTRC family transcripti 35.7 1.5E+02 0.0051 22.8 7.9 61 25-90 5-66 (196)
254 2wlr_A Putative thiosulfate su 35.6 61 0.0021 28.6 5.9 38 192-229 202-240 (423)
255 2eg4_A Probable thiosulfate su 35.4 67 0.0023 25.4 5.7 42 184-226 51-95 (230)
256 3aay_A Putative thiosulfate su 35.1 58 0.002 26.6 5.4 37 192-228 76-114 (277)
257 3h11_A CAsp8 and FADD-like apo 34.8 22 0.00076 29.4 2.7 49 192-241 42-90 (272)
258 3lhi_A Putative 6-phosphogluco 34.6 71 0.0024 25.6 5.6 27 82-108 46-72 (232)
259 2z4s_A Chromosomal replication 34.5 41 0.0014 30.0 4.5 107 28-137 107-235 (440)
260 2p65_A Hypothetical protein PF 34.2 15 0.00052 27.6 1.5 14 98-111 115-128 (187)
261 1d2n_A N-ethylmaleimide-sensit 34.2 49 0.0017 26.9 4.8 15 97-111 123-137 (272)
262 2zj8_A DNA helicase, putative 34.0 80 0.0027 30.1 6.8 77 24-107 237-346 (720)
263 1iqp_A RFCS; clamp loader, ext 33.9 80 0.0027 26.2 6.2 39 97-136 109-147 (327)
264 3ec2_A DNA replication protein 33.8 26 0.0009 26.4 2.8 45 97-141 99-145 (180)
265 2va8_A SSO2462, SKI2-type heli 33.8 1E+02 0.0034 29.4 7.5 75 23-103 251-361 (715)
266 4ag6_A VIRB4 ATPase, type IV s 33.4 41 0.0014 29.3 4.4 42 98-139 262-307 (392)
267 3kta_B Chromosome segregation 33.4 37 0.0013 25.8 3.6 40 98-137 86-125 (173)
268 3g85_A Transcriptional regulat 33.0 1.9E+02 0.0065 23.2 9.5 40 179-219 174-213 (289)
269 3e4c_A Caspase-1; zymogen, inf 32.9 1.3E+02 0.0043 25.3 7.0 47 194-241 61-118 (302)
270 3iwt_A 178AA long hypothetical 32.9 1.6E+02 0.0053 22.2 8.3 56 203-258 39-96 (178)
271 3aay_A Putative thiosulfate su 32.7 71 0.0024 26.1 5.5 37 192-228 225-263 (277)
272 1njg_A DNA polymerase III subu 32.3 39 0.0014 26.4 3.8 38 98-136 126-163 (250)
273 2gno_A DNA polymerase III, gam 32.3 38 0.0013 28.5 3.8 40 96-136 80-119 (305)
274 3nwp_A 6-phosphogluconolactona 32.2 76 0.0026 25.4 5.4 27 82-108 49-75 (233)
275 2ouc_A Dual specificity protei 31.5 26 0.00088 25.1 2.3 36 193-228 83-127 (142)
276 1wik_A Thioredoxin-like protei 31.5 1.2E+02 0.0041 20.5 6.3 47 193-239 14-66 (109)
277 2v1u_A Cell division control p 30.7 39 0.0013 29.0 3.7 28 98-125 130-158 (387)
278 1jbk_A CLPB protein; beta barr 30.4 68 0.0023 23.8 4.8 14 98-111 115-128 (195)
279 2l2q_A PTS system, cellobiose- 30.2 63 0.0021 22.2 4.0 54 25-85 5-62 (109)
280 1rhs_A Sulfur-substituted rhod 29.9 58 0.002 27.0 4.5 38 192-229 239-277 (296)
281 1rif_A DAR protein, DNA helica 29.7 92 0.0031 25.4 5.7 53 192-251 156-212 (282)
282 3ksm_A ABC-type sugar transpor 29.7 2.1E+02 0.0071 22.7 13.6 39 179-218 173-211 (276)
283 3k4h_A Putative transcriptiona 29.2 2.2E+02 0.0076 22.8 14.9 179 25-219 9-217 (292)
284 1z5z_A Helicase of the SNF2/RA 29.1 1.8E+02 0.006 23.8 7.3 77 24-108 112-193 (271)
285 2p6r_A Afuhel308 helicase; pro 28.7 75 0.0026 30.2 5.6 75 24-105 242-346 (702)
286 1sxj_C Activator 1 40 kDa subu 28.4 1.1E+02 0.0037 25.9 6.1 39 97-136 109-147 (340)
287 3ntd_A FAD-dependent pyridine 28.3 45 0.0015 30.7 3.9 37 193-229 524-560 (565)
288 3n70_A Transport activator; si 28.1 58 0.002 23.5 3.8 37 100-137 78-114 (145)
289 2wem_A Glutaredoxin-related pr 27.8 1.5E+02 0.0053 20.5 7.8 53 183-238 12-71 (118)
290 1sxj_D Activator 1 41 kDa subu 27.6 73 0.0025 26.9 4.9 40 97-137 132-171 (353)
291 3n0r_A Response regulator; sig 27.5 2.5E+02 0.0087 22.9 8.7 84 46-138 154-242 (286)
292 1qtn_A Caspase-8; apoptosis, d 27.5 1.9E+02 0.0066 21.6 6.8 38 203-241 54-91 (164)
293 1a5t_A Delta prime, HOLB; zinc 27.3 55 0.0019 27.8 4.0 40 97-137 107-146 (334)
294 1vlj_A NADH-dependent butanol 26.5 3.2E+02 0.011 23.8 9.2 68 183-250 33-108 (407)
295 3tx2_A Probable 6-phosphogluco 26.5 1E+02 0.0036 24.9 5.3 65 26-108 8-79 (251)
296 3kke_A LACI family transcripti 26.5 2.6E+02 0.0089 22.7 11.9 178 25-219 16-222 (303)
297 1rhs_A Sulfur-substituted rhod 26.4 63 0.0022 26.8 4.2 37 192-228 91-131 (296)
298 2nn3_C Caspase-1; cysteine pro 26.4 1.4E+02 0.0049 25.0 6.3 48 193-241 60-120 (310)
299 3g1w_A Sugar ABC transporter; 26.4 2.6E+02 0.0088 22.6 17.6 182 24-218 4-211 (305)
300 3jux_A Protein translocase sub 25.9 93 0.0032 30.0 5.4 55 24-82 474-530 (822)
301 3fho_A ATP-dependent RNA helic 25.9 92 0.0031 28.2 5.4 69 193-269 189-267 (508)
302 1vkr_A Mannitol-specific PTS s 25.8 71 0.0024 22.7 3.7 56 25-86 14-71 (125)
303 2qen_A Walker-type ATPase; unk 25.8 55 0.0019 27.5 3.8 37 100-138 130-172 (350)
304 1yt8_A Thiosulfate sulfurtrans 25.8 63 0.0022 29.6 4.4 37 192-228 321-358 (539)
305 4a4z_A Antiviral helicase SKI2 25.6 91 0.0031 31.2 5.7 49 192-251 81-131 (997)
306 3h4m_A Proteasome-activating n 25.5 48 0.0016 27.1 3.2 13 99-111 111-123 (285)
307 1jr3_A DNA polymerase III subu 25.4 65 0.0022 27.5 4.2 39 97-136 118-156 (373)
308 1okg_A Possible 3-mercaptopyru 25.3 85 0.0029 27.2 4.9 38 192-229 94-133 (373)
309 3p45_A Caspase-6; protease, hu 25.3 2.2E+02 0.0074 21.7 6.5 48 193-241 44-105 (179)
310 3oc6_A 6-phosphogluconolactona 24.9 1E+02 0.0036 24.9 5.0 24 85-108 54-79 (248)
311 1y89_A DEVB protein; structura 24.7 1.6E+02 0.0053 23.5 6.1 63 28-108 4-71 (238)
312 4g81_D Putative hexonate dehyd 24.7 2.8E+02 0.0095 22.4 8.3 59 193-251 33-94 (255)
313 3ics_A Coenzyme A-disulfide re 24.5 57 0.0019 30.2 3.8 37 193-229 541-577 (588)
314 3gyb_A Transcriptional regulat 24.5 2.7E+02 0.0091 22.1 9.1 176 25-219 6-201 (280)
315 1t3k_A Arath CDC25, dual-speci 24.3 65 0.0022 23.6 3.5 38 192-229 84-131 (152)
316 2fp3_A Caspase NC; apoptosis, 24.3 1.6E+02 0.0056 24.7 6.3 49 192-241 60-120 (316)
317 3eie_A Vacuolar protein sortin 24.0 89 0.003 26.2 4.7 15 98-112 110-124 (322)
318 3cnb_A DNA-binding response re 23.5 1.8E+02 0.0063 19.9 6.7 70 179-251 19-92 (143)
319 3od5_A Caspase-6; caspase doma 22.9 1.7E+02 0.0057 24.2 6.0 48 193-241 21-82 (278)
320 2qgz_A Helicase loader, putati 22.7 2.8E+02 0.0096 23.0 7.5 69 42-110 138-226 (308)
321 1fnn_A CDC6P, cell division co 22.6 26 0.0009 30.2 1.1 13 98-110 125-137 (389)
322 3dbi_A Sugar-binding transcrip 22.2 3.3E+02 0.011 22.5 13.0 179 25-219 62-267 (338)
323 1yt8_A Thiosulfate sulfurtrans 22.1 61 0.0021 29.8 3.5 37 192-228 62-99 (539)
324 2l69_A Rossmann 2X3 fold prote 22.0 1.8E+02 0.0061 19.2 6.5 49 197-247 6-54 (134)
325 3tb6_A Arabinose metabolism tr 21.9 3.1E+02 0.011 21.9 17.2 184 25-219 16-226 (298)
326 2fna_A Conserved hypothetical 21.8 97 0.0033 26.0 4.6 37 100-138 139-178 (357)
327 1m72_A Caspase-1; caspase, cys 21.7 2.3E+02 0.0079 23.2 6.6 39 203-242 55-93 (272)
328 2dko_A Caspase-3; low barrier 21.6 2.1E+02 0.0071 20.9 5.7 74 202-281 39-115 (146)
329 1pyo_A Caspase-2; apoptosis, c 21.6 2.6E+02 0.0089 20.9 7.3 38 203-241 57-94 (167)
330 1xx6_A Thymidine kinase; NESG, 21.5 67 0.0023 24.8 3.1 14 98-111 81-94 (191)
331 1w5s_A Origin recognition comp 21.1 62 0.0021 28.0 3.2 14 99-112 139-152 (412)
332 1cmk_I CAMP-dependent protein 20.8 26 0.00089 17.1 0.3 9 280-288 8-16 (26)
333 1sxj_B Activator 1 37 kDa subu 20.7 65 0.0022 26.7 3.2 38 98-136 107-144 (323)
334 3olh_A MST, 3-mercaptopyruvate 20.3 62 0.0021 27.0 2.9 48 182-229 240-291 (302)
335 3hzu_A Thiosulfate sulfurtrans 20.2 60 0.0021 27.4 2.8 46 183-228 248-296 (318)
336 2wlr_A Putative thiosulfate su 20.2 83 0.0028 27.7 3.8 37 192-228 357-394 (423)
337 3tp9_A Beta-lactamase and rhod 20.1 75 0.0026 28.5 3.6 37 193-229 427-464 (474)
338 1t1v_A SH3BGRL3, SH3 domain-bi 20.0 89 0.003 20.4 3.1 34 206-239 21-54 (93)
339 2xw6_A MGS, methylglyoxal synt 20.0 1.1E+02 0.0038 22.1 3.7 47 201-252 36-83 (134)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.1e-53 Score=388.80 Aligned_cols=324 Identities=28% Similarity=0.453 Sum_probs=291.4
Q ss_pred CcccccCCc-----chhhhcccCcCC----CCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAK----ITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRI 71 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 71 (351)
+++|+|||| ++|++..+.... ..++++||++||++|+.|+++.+++++...++++..++|+.....+...+
T Consensus 97 i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l 176 (434)
T 2db3_A 97 MACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI 176 (434)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH
T ss_pred EEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh
Confidence 478999997 677877765432 23589999999999999999999999988889999999999988887777
Q ss_pred hCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhC--CCCCcEEEEEeeCcchHHHHHHH
Q psy13286 72 YQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISIL--PHERQILLYSATFPLTVKNFMEK 149 (351)
Q Consensus 72 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~--~~~~~~i~~SaT~~~~~~~~~~~ 149 (351)
..+++|+|+||++|.+++.++...+.+++++|+||||++.+.+|...+..++..+ +...|++++|||++..+..+...
T Consensus 177 ~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~ 256 (434)
T 2db3_A 177 TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGE 256 (434)
T ss_dssp TTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHT
T ss_pred hcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHH
Confidence 8899999999999999999888889999999999999999999999999998875 56789999999999999999999
Q ss_pred hcCCCeEEeeccc-cccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCC
Q psy13286 150 HLKDPYEINLMEE-LTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 228 (351)
Q Consensus 150 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 228 (351)
++.++..+..... .....+.+.+..+....|...+..++.....+ +||||++++.++.+++.|+..++.+..+||+++
T Consensus 257 ~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~ 335 (434)
T 2db3_A 257 FLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRL 335 (434)
T ss_dssp TCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSC
T ss_pred hccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 9988877766532 34556788888888889999999999887644 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEec-cchHHHHHH
Q psy13286 229 QAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLIT-YEDRYALHR 307 (351)
Q Consensus 229 ~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~-~~~~~~~~~ 307 (351)
+.+|.++++.|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|++ .++......
T Consensus 336 ~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~ 415 (434)
T 2db3_A 336 QSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAAD 415 (434)
T ss_dssp HHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 457778899
Q ss_pred HHHHhccccCCCCccccc
Q psy13286 308 IEKELGTEIKSIPKVIDP 325 (351)
Q Consensus 308 l~~~l~~~~~~~~~~~~~ 325 (351)
+.+.+....+++|..+.+
T Consensus 416 l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 416 LVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp HHHHHHHTTCCCCGGGC-
T ss_pred HHHHHHHcCCCCCHHHHh
Confidence 999999999999988764
No 2
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.7e-52 Score=376.94 Aligned_cols=327 Identities=66% Similarity=1.089 Sum_probs=300.5
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+++||||+| ++|++..+..... ++++||++|+++|+.|+.+.++++....++++....|+............++
T Consensus 62 li~a~TGsGKT~~~~~~~~~~~~~~~~-~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 140 (400)
T 1s2m_A 62 LARAKNGTGKTAAFVIPTLEKVKPKLN-KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETV 140 (400)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCTTSC-SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCC
T ss_pred EEECCCCcHHHHHHHHHHHHHHhhccC-CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCC
Confidence 478999997 5666666654433 4799999999999999999999999888999999999998877777777789
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCe
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPY 155 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 155 (351)
+|+|+||+++.+.+.+....+.+++++|+||+|++.+.+|...+..+...++...+++++|||++......+..++..+.
T Consensus 141 ~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~ 220 (400)
T 1s2m_A 141 HILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPY 220 (400)
T ss_dssp SEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred CEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCe
Confidence 99999999999998887778899999999999999998899999999999888999999999999999999998988888
Q ss_pred EEeeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHH
Q psy13286 156 EINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRV 235 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 235 (351)
.+.........++.+++.......+...+..++...+++++||||++++.++.+++.|+..++.+..+||+++..+|.++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 300 (400)
T 1s2m_A 221 EINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKV 300 (400)
T ss_dssp EESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHH
T ss_pred EEEeccccccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHH
Confidence 88777777777888888888888999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhccc
Q psy13286 236 FHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTE 315 (351)
Q Consensus 236 ~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~ 315 (351)
++.|++|+.+|||||+++++|+|+|++++||++++|++...|+||+||+||.|+.|.++++++..|...++++++.++.+
T Consensus 301 ~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 380 (400)
T 1s2m_A 301 FHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE 380 (400)
T ss_dssp HHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred HHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccc
Q psy13286 316 IKSIPKVIDPALY 328 (351)
Q Consensus 316 ~~~~~~~~~~~~~ 328 (351)
++++|..+.+.++
T Consensus 381 ~~~~~~~~~~~~~ 393 (400)
T 1s2m_A 381 IAAIPATIDKSLY 393 (400)
T ss_dssp CEECCSSCCGGGT
T ss_pred cccccccccccce
Confidence 9999998887764
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.6e-51 Score=375.96 Aligned_cols=323 Identities=36% Similarity=0.636 Sum_probs=291.0
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+++||||+| ++|++..+..... ++++||++|+++|+.|+.+.++++....++++..+.|+.....+...+..++
T Consensus 78 lv~a~TGsGKT~~~~~~~~~~l~~~~~-~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 156 (410)
T 2j0s_A 78 IAQSQSGTGKTATFSISVLQCLDIQVR-ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 156 (410)
T ss_dssp EEECCTTSSHHHHHHHHHHHTCCTTSC-SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCC
T ss_pred EEECCCCCCchHHHHHHHHHHHhhccC-CceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCC
Confidence 478999997 5577766654333 4899999999999999999999999888999999999998888777777789
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCe
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPY 155 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 155 (351)
+|+|+||+++.+.+.++...+.+++++|+||+|++.+.+|...+..+...++...|++++|||++.....+...++.++.
T Consensus 157 ~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 236 (410)
T 2j0s_A 157 HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPI 236 (410)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCE
T ss_pred CEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCE
Confidence 99999999999999888888899999999999999999999999999999989999999999999988888888888887
Q ss_pred EEeecc-ccccCCceEEEEEcCccc-HHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHH
Q psy13286 156 EINLME-ELTLKGVTQYYAFVQERQ-KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRN 233 (351)
Q Consensus 156 ~~~~~~-~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 233 (351)
.+.... .....++.+.+..+.... +...+..++.....+++||||++++.++.+++.|...++.+..+||+++..+|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~ 316 (410)
T 2j0s_A 237 RILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERE 316 (410)
T ss_dssp EECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHH
T ss_pred EEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHH
Confidence 766543 335556777777666554 888899999888888999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhc
Q psy13286 234 RVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELG 313 (351)
Q Consensus 234 ~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~ 313 (351)
++++.|++|+.+|||||+++++|+|+|++++||++++|++...|+||+||+||.|+.|.++++++..|...++.++++++
T Consensus 317 ~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 396 (410)
T 2j0s_A 317 SIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYS 396 (410)
T ss_dssp HHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccc
Q psy13286 314 TEIKSIPKVID 324 (351)
Q Consensus 314 ~~~~~~~~~~~ 324 (351)
..++++|....
T Consensus 397 ~~~~~~~~~~~ 407 (410)
T 2j0s_A 397 TQIDEMPMNVA 407 (410)
T ss_dssp CCCEECCSCCT
T ss_pred CCceecccchh
Confidence 99999887654
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-50 Score=370.60 Aligned_cols=330 Identities=29% Similarity=0.492 Sum_probs=289.4
Q ss_pred CcccccCCc-----chhhhcccCcCC-----------------CCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEE
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAK-----------------ITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVT 58 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~-----------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~ 58 (351)
+++|||||| ++|++..+.... ..++++||++||++|+.|+++.++++....++++..+
T Consensus 56 lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 135 (417)
T 2i4i_A 56 MACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 135 (417)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEE
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEE
Confidence 478999997 667776654321 1236899999999999999999999998889999999
Q ss_pred ECCcchHHHHHHHhCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhC--CC--CCcEEE
Q psy13286 59 TGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISIL--PH--ERQILL 134 (351)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~--~~--~~~~i~ 134 (351)
+|+.........+..+++|+|+||++|.+.+..+...+.++++||+||+|++.+.+|...+..+.... +. ..|+++
T Consensus 136 ~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 215 (417)
T 2i4i_A 136 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMM 215 (417)
T ss_dssp CSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEE
T ss_pred ECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEE
Confidence 99998888877888889999999999999998888888999999999999999999999998888743 22 578999
Q ss_pred EEeeCcchHHHHHHHhcCCCeEEeeccc-cccCCceEEEEEcCcccHHHHHHHHHhhC-CCCcEEEEeCchHHHHHHHHH
Q psy13286 135 YSATFPLTVKNFMEKHLKDPYEINLMEE-LTLKGVTQYYAFVQERQKVHCLNTLFSKL-QINQSIIFCNSTQRVELLAKK 212 (351)
Q Consensus 135 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lIf~~~~~~~~~l~~~ 212 (351)
+|||++.....+...++.++..+..... ....++.+.+..+....+...+..+++.. .++++||||+++++++.+++.
T Consensus 216 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~ 295 (417)
T 2i4i_A 216 FSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDF 295 (417)
T ss_dssp EESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHH
Confidence 9999999988888888888877665433 34566778888888888999999999876 467899999999999999999
Q ss_pred HHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCcee
Q psy13286 213 ITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGI 292 (351)
Q Consensus 213 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~ 292 (351)
|+..++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.
T Consensus 296 L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~ 375 (417)
T 2i4i_A 296 LYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL 375 (417)
T ss_dssp HHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEE
T ss_pred HHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccchHHHHHHHHHHhccccCCCCcccccccccc
Q psy13286 293 AINLITYEDRYALHRIEKELGTEIKSIPKVIDPALYVA 330 (351)
Q Consensus 293 ~i~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 330 (351)
+++++++.|...+..+.+.+.....++|..+.+.....
T Consensus 376 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 413 (417)
T 2i4i_A 376 ATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEH 413 (417)
T ss_dssp EEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHHHTCS
T ss_pred EEEEEccccHHHHHHHHHHHHHhcCcCCHHHHHHHHhh
Confidence 99999999999999999999998899888877665443
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.7e-50 Score=369.72 Aligned_cols=325 Identities=35% Similarity=0.624 Sum_probs=274.1
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHh-CC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIY-QK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~ 74 (351)
+|+||||+| ++|++..+..... ++++||++|+++|+.|+.+.+++++...+..+....|+.........+. ..
T Consensus 81 lv~a~TGsGKT~~~~~~~~~~~~~~~~-~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (414)
T 3eiq_A 81 IAQAQSGTGKTATFAISILQQIELDLK-ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 159 (414)
T ss_dssp EECCCSCSSSHHHHHHHHHHHCCTTSC-SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTC
T ss_pred EEECCCCCcccHHHHHHHHHHHhhcCC-ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCC
Confidence 478999997 5666766654433 4799999999999999999999999988999999999988777766665 67
Q ss_pred CcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 75 VHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
++|+|+||+++.+.+.+....+..+++||+||+|++.+.++...+..+...++...|++++|||++.........++.++
T Consensus 160 ~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 239 (414)
T 3eiq_A 160 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDP 239 (414)
T ss_dssp CSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSC
T ss_pred CCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCC
Confidence 89999999999999988888889999999999999999999999999999999999999999999999999999888888
Q ss_pred eEEeecc-ccccCCceEEEEEcCcc-cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHH
Q psy13286 155 YEINLME-ELTLKGVTQYYAFVQER-QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHR 232 (351)
Q Consensus 155 ~~~~~~~-~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 232 (351)
..+.... ......+.+.+...... .+...+..++.....+++||||++++.++.+++.|+..++.+..+||+++..+|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r 319 (414)
T 3eiq_A 240 IRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKER 319 (414)
T ss_dssp EEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHH
T ss_pred EEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHH
Confidence 7776643 33455566666666554 588999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHh
Q psy13286 233 NRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKEL 312 (351)
Q Consensus 233 ~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l 312 (351)
..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.++++++..|...++.+++.+
T Consensus 320 ~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~ 399 (414)
T 3eiq_A 320 DVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 399 (414)
T ss_dssp HHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccc
Q psy13286 313 GTEIKSIPKVIDPA 326 (351)
Q Consensus 313 ~~~~~~~~~~~~~~ 326 (351)
+.+++++|..+.+.
T Consensus 400 ~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 400 NTSIEEMPLNVADL 413 (414)
T ss_dssp TCCCEECCC-----
T ss_pred cCCccccChhhhhc
Confidence 99999999877653
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.2e-49 Score=358.56 Aligned_cols=326 Identities=34% Similarity=0.582 Sum_probs=287.8
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC-CceEEEEECCcchHHHHHHHhC-
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL-NVKVMVTTGGTNLRDDIMRIYQ- 73 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~- 73 (351)
+|+||||+| ++|++..+..... ++++||++|+++|+.|+.+.++++.... ++++..+.|+.........+..
T Consensus 49 lv~a~TGsGKT~~~~~~~~~~l~~~~~-~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 127 (391)
T 1xti_A 49 LCQAKSGMGKTAVFVLATLQQLEPVTG-QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 127 (391)
T ss_dssp EEECSSCSSHHHHHHHHHHHHCCCCTT-CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHS
T ss_pred EEECCCCCcHHHHHHHHHHHhhcccCC-CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcC
Confidence 478999997 5666666554433 4799999999999999999999998776 7899999999887666555543
Q ss_pred CCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccC-cchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcC
Q psy13286 74 KVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLS-QDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLK 152 (351)
Q Consensus 74 ~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 152 (351)
.++|+|+||+++...+.+....+.+++++|+||+|++.+ .++...+..+....+...|++++|||+++........++.
T Consensus 128 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 207 (391)
T 1xti_A 128 CPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ 207 (391)
T ss_dssp CCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCS
T ss_pred CCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcC
Confidence 479999999999999988887889999999999999987 4777888888888888999999999999999999999998
Q ss_pred CCeEEeeccc--cccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHH
Q psy13286 153 DPYEINLMEE--LTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQA 230 (351)
Q Consensus 153 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 230 (351)
++..+..... .....+.+.+.......+...+..++...+++++||||+++++++.+++.|+..++.+..+||+++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 287 (391)
T 1xti_A 208 DPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQE 287 (391)
T ss_dssp SCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHH
T ss_pred CCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Confidence 8877765533 34456778888888888999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccc-hHHHHHHHH
Q psy13286 231 HRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYE-DRYALHRIE 309 (351)
Q Consensus 231 ~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~-~~~~~~~l~ 309 (351)
+|.++++.|++|+.+|||||+++++|+|+|++++||++++|++...|+||+||+||.|+.|.+++++++. +...+..++
T Consensus 288 ~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 367 (391)
T 1xti_A 288 ERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 367 (391)
T ss_dssp HHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876 567789999
Q ss_pred HHhccccCCCCccccccc
Q psy13286 310 KELGTEIKSIPKVIDPAL 327 (351)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~ 327 (351)
+.++..+.++|..++...
T Consensus 368 ~~~~~~~~~~~~~~~~~~ 385 (391)
T 1xti_A 368 DRFEVNISELPDEIDISS 385 (391)
T ss_dssp HHTTCCCEECCSCCCGGG
T ss_pred HHhcCChhhCCccccHHH
Confidence 999999999998866543
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-47 Score=345.02 Aligned_cols=313 Identities=30% Similarity=0.520 Sum_probs=276.5
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
++++|||+| ++|++..+... .+.+++|++|+++|+.|+.+.++++....++++....|+........... .+
T Consensus 48 l~~~~TGsGKT~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~ 124 (367)
T 1hv8_A 48 VAQARTGSGKTASFAIPLIELVNEN--NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NA 124 (367)
T ss_dssp EEECCSSSSHHHHHHHHHHHHSCSS--SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TC
T ss_pred EEECCCCChHHHHHHHHHHHHhccc--CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CC
Confidence 468999997 44555554332 34799999999999999999999999888899999999988766655544 68
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCe
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPY 155 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 155 (351)
+|+|+||+++.+.+..+...+.+++++|+||+|++.+.++...+..+....+...+++++|||++.........++.++.
T Consensus 125 ~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 204 (367)
T 1hv8_A 125 NIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYS 204 (367)
T ss_dssp SEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEE
T ss_pred CEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCe
Confidence 99999999999999888778899999999999999999999999999999988999999999999998888888877655
Q ss_pred EEeeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHH
Q psy13286 156 EINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRV 235 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 235 (351)
.+... ....+.+.+.......+...+..++. ..+.++||||++++.++.+++.|+..+..+..+||+++..+|.++
T Consensus 205 ~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 280 (367)
T 1hv8_A 205 FIKAK---INANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKV 280 (367)
T ss_dssp EEECC---SSSSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHH
T ss_pred EEEec---CCCCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHH
Confidence 44332 23356677777888888888888887 455789999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhccc
Q psy13286 236 FHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTE 315 (351)
Q Consensus 236 ~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~ 315 (351)
++.|++|+.+|||||+++++|+|+|++++||++++|+|+.+|.||+||+||.|+.|.++++++..|...++.+++.++.+
T Consensus 281 ~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 360 (367)
T 1hv8_A 281 IRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLK 360 (367)
T ss_dssp HHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCC
T ss_pred HHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13286 316 IKSIP 320 (351)
Q Consensus 316 ~~~~~ 320 (351)
+.+++
T Consensus 361 ~~~~~ 365 (367)
T 1hv8_A 361 IKKLK 365 (367)
T ss_dssp CCCBC
T ss_pred Cceec
Confidence 88765
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.5e-47 Score=346.49 Aligned_cols=318 Identities=29% Similarity=0.545 Sum_probs=273.2
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|+||||+| ++|++..+..... ++++||++|+++|+.|+.+.++++....++.+....++...... ..++
T Consensus 48 lv~a~TGsGKT~~~~~~~~~~~~~~~~-~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 122 (395)
T 3pey_A 48 IAQSQSGTGKTAAFSLTMLTRVNPEDA-SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINA 122 (395)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCTTCC-SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCC
T ss_pred EEECCCCCcHHHHHHHHHHHHhccCCC-CccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCC
Confidence 478999997 5567766654433 47999999999999999999999998888888888877643222 2368
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccC-cchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLS-QDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
+|+|+||+++.+.+.+....+.++++||+||+|++.+ .++...+..+...++...|++++|||+++....+...++.++
T Consensus 123 ~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 202 (395)
T 3pey_A 123 QVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNA 202 (395)
T ss_dssp SEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSC
T ss_pred CEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCC
Confidence 9999999999999988888889999999999999887 678888888888888899999999999999999998888887
Q ss_pred eEEeeccc-cccCCceEEEEEc-CcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHH
Q psy13286 155 YEINLMEE-LTLKGVTQYYAFV-QERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHR 232 (351)
Q Consensus 155 ~~~~~~~~-~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 232 (351)
..+..... .....+.+.+... ....+...+..++....++++||||++++.++.+++.|+..++.+..+||+++..+|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r 282 (395)
T 3pey_A 203 NTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQER 282 (395)
T ss_dssp EEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHH
T ss_pred eEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHH
Confidence 77666533 3444555655555 345678888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCC------ChhhHhhhccccccCCCceeEEEEeccc-hHHHH
Q psy13286 233 NRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPK------MAETYLHRIGRSGRYGHLGIAINLITYE-DRYAL 305 (351)
Q Consensus 233 ~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~------s~~~~~q~~GR~gR~~~~~~~i~~~~~~-~~~~~ 305 (351)
.++++.|++|+.+|||||+++++|+|+|++++||+++.|+ ++..|+||+||+||.|+.|.+++++... +...+
T Consensus 283 ~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 362 (395)
T 3pey_A 283 DRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNIL 362 (395)
T ss_dssp HHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHH
Confidence 9999999999999999999999999999999999999998 9999999999999999999999999865 56678
Q ss_pred HHHHHHhc-cccCCCCccc
Q psy13286 306 HRIEKELG-TEIKSIPKVI 323 (351)
Q Consensus 306 ~~l~~~l~-~~~~~~~~~~ 323 (351)
..+++.++ .++..+|..-
T Consensus 363 ~~i~~~~~~~~~~~~~~~~ 381 (395)
T 3pey_A 363 SAIQKYFGDIEMTRVPTDD 381 (395)
T ss_dssp HHHHHHTTSCCCEECCSSC
T ss_pred HHHHHHhCCceeecCChHH
Confidence 88888888 7776666533
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.4e-47 Score=348.63 Aligned_cols=321 Identities=33% Similarity=0.542 Sum_probs=271.7
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC-CceEEEEECCcchHHHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL-NVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
+|+||||+| ++|++..+..... ++++||++|+++|+.|+.++++++.... +..+....++...... ....
T Consensus 68 lv~apTGsGKT~~~~~~~~~~~~~~~~-~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 143 (412)
T 3fht_A 68 IAQSQSGTGKTAAFVLAMLSQVEPANK-YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKIS 143 (412)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCTTSC-SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCC
T ss_pred EEECCCCchHHHHHHHHHHHHhhhcCC-CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCC
Confidence 478999997 5677777655544 3799999999999999999999998765 5777777777654332 1346
Q ss_pred CcEEEEccHHHHHHHhc-cCcCCCCccEEEEcccccccC-cchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcC
Q psy13286 75 VHLIIATPGRILDLMDK-QVANMDHCKILVLDEADKLLS-QDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLK 152 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~-~~~~~~~~~lvViDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 152 (351)
++|+|+||+++.+.+.+ ....+.++++||+||+|++.+ .++...+..+...++...|++++|||++.....+...++.
T Consensus 144 ~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 223 (412)
T 3fht_A 144 EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVP 223 (412)
T ss_dssp CSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSS
T ss_pred CCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcC
Confidence 79999999999998865 555678999999999999887 6788888888888889999999999999999999999998
Q ss_pred CCeEEeeccc-cccCCceEEEEEcCc-ccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHH
Q psy13286 153 DPYEINLMEE-LTLKGVTQYYAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQA 230 (351)
Q Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 230 (351)
++..+..... .....+.+.+..... ..+...+..++....++++||||+++++++.+++.|+..++.+..+||+++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 303 (412)
T 3fht_A 224 DPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVE 303 (412)
T ss_dssp SCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHH
T ss_pred CCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHH
Confidence 8887766543 344556666665544 46888888888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCC------ChhhHhhhccccccCCCceeEEEEeccch-HH
Q psy13286 231 HRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPK------MAETYLHRIGRSGRYGHLGIAINLITYED-RY 303 (351)
Q Consensus 231 ~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~------s~~~~~q~~GR~gR~~~~~~~i~~~~~~~-~~ 303 (351)
+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|. +..+|+||+||+||.|..|.++++++..+ ..
T Consensus 304 ~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 383 (412)
T 3fht_A 304 QRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMN 383 (412)
T ss_dssp HHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHH
T ss_pred HHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHH
Confidence 999999999999999999999999999999999999999994 67899999999999999999999998764 78
Q ss_pred HHHHHHHHhccccCCCCccccc
Q psy13286 304 ALHRIEKELGTEIKSIPKVIDP 325 (351)
Q Consensus 304 ~~~~l~~~l~~~~~~~~~~~~~ 325 (351)
.+..+++.++..+.+++..-.+
T Consensus 384 ~~~~i~~~~~~~~~~~~~~~~~ 405 (412)
T 3fht_A 384 ILNRIQEHFNKKIERLDTDDLD 405 (412)
T ss_dssp HHHHHHHHHTCCCEEC------
T ss_pred HHHHHHHHHCCccccCCCccHH
Confidence 8999999999999887754433
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=7.6e-50 Score=363.01 Aligned_cols=323 Identities=36% Similarity=0.664 Sum_probs=136.4
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|+||||+| ++|++..+..... ++++||++|+++|+.|+.+.++++....++++..++|+.........+. ++
T Consensus 62 lv~~~TGsGKT~~~~~~~~~~l~~~~~-~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~ 139 (394)
T 1fuu_A 62 LAQAQSGTGKTGTFSIAALQRIDTSVK-APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DA 139 (394)
T ss_dssp EECCCSSHHHHHHHHHHHHHHCCTTCC-SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HC
T ss_pred EEECCCCChHHHHHHHHHHHHhhccCC-CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CC
Confidence 478999996 5666766654433 4799999999999999999999999888999999999988665544443 68
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCe
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPY 155 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 155 (351)
+|+|+||+++.+.+.+....+.+++++|+||+|++.+.++...+..+...++...|++++|||+++........++.++.
T Consensus 140 ~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 219 (394)
T 1fuu_A 140 QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPV 219 (394)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCE
T ss_pred CEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCe
Confidence 99999999999999888777889999999999999888899999999999999999999999999998888888888887
Q ss_pred EEeeccc-cccCCceEEEEEcCcc-cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHH
Q psy13286 156 EINLMEE-LTLKGVTQYYAFVQER-QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRN 233 (351)
Q Consensus 156 ~~~~~~~-~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 233 (351)
.+..... ....++.+.+..+... .+...+..++....++++||||+++++++.+++.|+..++.+..+||+++..+|.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 299 (394)
T 1fuu_A 220 RILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERD 299 (394)
T ss_dssp EEEECC--------------------------------------------------------------------------
T ss_pred EEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHH
Confidence 7766433 2334455555544443 3677777888777788999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhc
Q psy13286 234 RVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELG 313 (351)
Q Consensus 234 ~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~ 313 (351)
++++.|++|+.+|||||+++++|+|+|++++||++++|.++..|.||+||+||.|+.|.+++++++.|...++.+++.++
T Consensus 300 ~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 379 (394)
T 1fuu_A 300 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 379 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccc
Q psy13286 314 TEIKSIPKVIDP 325 (351)
Q Consensus 314 ~~~~~~~~~~~~ 325 (351)
.++.++|..+.+
T Consensus 380 ~~~~~~~~~~~~ 391 (394)
T 1fuu_A 380 TQIEELPSDIAT 391 (394)
T ss_dssp ------------
T ss_pred CcccccCcchhh
Confidence 999998876544
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.6e-46 Score=355.15 Aligned_cols=319 Identities=23% Similarity=0.366 Sum_probs=263.1
Q ss_pred CcccccCCc-----chhhhcccCcCC---CCCceEEEEcCCHHHHHHHHHHHHHHHhh----CCceEEEEECCcchHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAK---ITSKATLIIVPTRELALQTSQICIELAKH----LNVKVMVTTGGTNLRDDI 68 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~ 68 (351)
+++||||+| ++|++..+.... ..++++|||+||++|+.|+.+.++++... ....+..+.|+......+
T Consensus 64 lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 143 (579)
T 3sqw_A 64 IARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM 143 (579)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH
T ss_pred EEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHH
Confidence 478999996 677777665432 33479999999999999999999998743 346788888988877776
Q ss_pred HHHhC-CCcEEEEccHHHHHHHhcc-CcCCCCccEEEEcccccccCcchHHHHHHHHHhCC-------CCCcEEEEEeeC
Q psy13286 69 MRIYQ-KVHLIIATPGRILDLMDKQ-VANMDHCKILVLDEADKLLSQDFKGMLDHVISILP-------HERQILLYSATF 139 (351)
Q Consensus 69 ~~~~~-~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~-------~~~~~i~~SaT~ 139 (351)
..+.. +++|+|+||+++.+.+.+. ...+..+++||+||||++.+++|...+..+...++ ..+|++++|||+
T Consensus 144 ~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~ 223 (579)
T 3sqw_A 144 NKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATL 223 (579)
T ss_dssp HHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSC
T ss_pred HHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccC
Confidence 66643 7999999999999888764 33578899999999999999999988887766543 367899999999
Q ss_pred cchHHHHHHHhcCCCeEEeecc-----ccccCCceEEEEEcCcc-c-H---HHHHHHHHhh-CCCCcEEEEeCchHHHHH
Q psy13286 140 PLTVKNFMEKHLKDPYEINLME-----ELTLKGVTQYYAFVQER-Q-K---VHCLNTLFSK-LQINQSIIFCNSTQRVEL 208 (351)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~-k---~~~l~~~l~~-~~~~~~lIf~~~~~~~~~ 208 (351)
++.+..+...++.++..+.... ......+.+.+...... . + ...+...+.. .++.++||||+++..++.
T Consensus 224 ~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~ 303 (579)
T 3sqw_A 224 DDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSF 303 (579)
T ss_dssp CTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHH
T ss_pred ChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHH
Confidence 9999888888888776655432 12233455555544432 1 2 2223333333 557899999999999999
Q ss_pred HHHHHHhc---CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccc
Q psy13286 209 LAKKITEL---GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSG 285 (351)
Q Consensus 209 l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~g 285 (351)
+++.|+.. ++.+..+||+|++.+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.++..|+||+||+|
T Consensus 304 l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRag 383 (579)
T 3sqw_A 304 LCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTA 383 (579)
T ss_dssp HHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSS
T ss_pred HHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccc
Confidence 99999987 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEEEeccchHHHHHHHHHHhccccCCC
Q psy13286 286 RYGHLGIAINLITYEDRYALHRIEKELGTEIKSI 319 (351)
Q Consensus 286 R~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~~~ 319 (351)
|.|+.|.+++++...|...++.+++..+..+...
T Consensus 384 R~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 417 (579)
T 3sqw_A 384 RSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 417 (579)
T ss_dssp CTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred cCCCCceEEEEEcccHHHHHHHHHHHhCCCcccc
Confidence 9999999999999999999999999988777643
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=6.3e-46 Score=352.15 Aligned_cols=319 Identities=23% Similarity=0.364 Sum_probs=261.4
Q ss_pred CcccccCCc-----chhhhcccCcCC---CCCceEEEEcCCHHHHHHHHHHHHHHHhhC----CceEEEEECCcchHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAK---ITSKATLIIVPTRELALQTSQICIELAKHL----NVKVMVTTGGTNLRDDI 68 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~ 68 (351)
+++|||||| ++|++..+.... ..++++|||+||++|+.|+++.++++.... ...+..+.|+......+
T Consensus 115 lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 194 (563)
T 3i5x_A 115 IARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM 194 (563)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH
T ss_pred EEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHH
Confidence 478999996 677777765433 234699999999999999999999986542 46788888988877766
Q ss_pred HHH-hCCCcEEEEccHHHHHHHhcc-CcCCCCccEEEEcccccccCcchHHHHHHHHHhC-------CCCCcEEEEEeeC
Q psy13286 69 MRI-YQKVHLIIATPGRILDLMDKQ-VANMDHCKILVLDEADKLLSQDFKGMLDHVISIL-------PHERQILLYSATF 139 (351)
Q Consensus 69 ~~~-~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~-------~~~~~~i~~SaT~ 139 (351)
..+ ..+++|+|+||+++.+.+.+. ...+..+++||+||||++.+++|...+..+...+ ....|++++|||+
T Consensus 195 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~ 274 (563)
T 3i5x_A 195 NKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATL 274 (563)
T ss_dssp HHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSC
T ss_pred HHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccC
Confidence 665 347999999999999888764 2357889999999999999999998888776654 2367899999999
Q ss_pred cchHHHHHHHhcCCCeEEeecc-----ccccCCceEEEEEcCcc-cH----HHHHHHHHhh-CCCCcEEEEeCchHHHHH
Q psy13286 140 PLTVKNFMEKHLKDPYEINLME-----ELTLKGVTQYYAFVQER-QK----VHCLNTLFSK-LQINQSIIFCNSTQRVEL 208 (351)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~k----~~~l~~~l~~-~~~~~~lIf~~~~~~~~~ 208 (351)
++.+..+...++.++..+.... ......+.+.+...... .+ ...+...+.. ..+.++||||+++..++.
T Consensus 275 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~ 354 (563)
T 3i5x_A 275 DDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSF 354 (563)
T ss_dssp CTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHH
T ss_pred CHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHH
Confidence 9998888888888776654432 12233344555444432 22 2222233333 557899999999999999
Q ss_pred HHHHHHhc---CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccc
Q psy13286 209 LAKKITEL---GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSG 285 (351)
Q Consensus 209 l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~g 285 (351)
+++.|+.. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+...|+||+||+|
T Consensus 355 l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRag 434 (563)
T 3i5x_A 355 LCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTA 434 (563)
T ss_dssp HHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSS
T ss_pred HHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccc
Confidence 99999987 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEEEeccchHHHHHHHHHHhccccCCC
Q psy13286 286 RYGHLGIAINLITYEDRYALHRIEKELGTEIKSI 319 (351)
Q Consensus 286 R~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~~~ 319 (351)
|.|..|.+++++...|...++.+++..+..+.+.
T Consensus 435 R~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 468 (563)
T 3i5x_A 435 RSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 468 (563)
T ss_dssp CTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred cCCCCceEEEEEchhHHHHHHHHHHHhCCCcccc
Confidence 9999999999999999999999999888777653
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.1e-45 Score=328.57 Aligned_cols=297 Identities=27% Similarity=0.467 Sum_probs=251.2
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|++|||+| ++|++.. +++++|++|+++|+.|+.+.++++....+.++..++|+........... .+
T Consensus 35 lv~~~TGsGKT~~~~~~~~~~-------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 106 (337)
T 2z0m_A 35 VVRAKTGSGKTAAYAIPILEL-------GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NA 106 (337)
T ss_dssp EEECCTTSSHHHHHHHHHHHH-------TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TC
T ss_pred EEEcCCCCcHHHHHHHHHHhh-------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CC
Confidence 478999997 3444332 4799999999999999999999999888899999999988766655543 48
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCe
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPY 155 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 155 (351)
+|+|+||+++.+.+.+....+.+++++|+||+|++.+.++...+..++...+...+++++|||++.........++.++.
T Consensus 107 ~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~ 186 (337)
T 2z0m_A 107 DIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYE 186 (337)
T ss_dssp SEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCE
T ss_pred CEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCce
Confidence 99999999999998887777889999999999999999999999999999998999999999999998888888887766
Q ss_pred EEeeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHH
Q psy13286 156 EINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRV 235 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 235 (351)
.+... ....+..+.+.......+. ....+....++++||||+++++++.+++.|+ .+..+||+++..+|.++
T Consensus 187 ~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~ 258 (337)
T 2z0m_A 187 EIEAC--IGLANVEHKFVHVKDDWRS--KVQALRENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRN 258 (337)
T ss_dssp EEECS--GGGGGEEEEEEECSSSSHH--HHHHHHTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHH
T ss_pred eeecc--cccCCceEEEEEeChHHHH--HHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHH
Confidence 55332 3344455555555544332 2355666778899999999999999999885 57899999999999999
Q ss_pred HHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhcc
Q psy13286 236 FHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGT 314 (351)
Q Consensus 236 ~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~ 314 (351)
++.|++|+.+|||||+++++|+|+|++++||++++|+|+..|+||+||+||.|+.|.+++++. .|...++.+++.++.
T Consensus 259 ~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 259 IDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp HHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred HHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999 888888888887654
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.3e-47 Score=356.69 Aligned_cols=318 Identities=33% Similarity=0.556 Sum_probs=128.0
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC-CceEEEEECCcchHHHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL-NVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
+++|||||| ++|++..+..... ++++|||+|+++|+.|+.++++++.... ++.+....++...... ....
T Consensus 135 l~~a~TGsGKT~~~~l~il~~l~~~~~-~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 210 (479)
T 3fmp_B 135 IAQSQSGTGKTAAFVLAMLSQVEPANK-YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKIS 210 (479)
T ss_dssp EEECCSSSSHHHHHHHHHHTTCCTTSC-SCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCC
T ss_pred EEEcCCCCchhHHHHHHHHHHHhhcCC-CCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCC
Confidence 578999997 6777777765544 3799999999999999999999998764 5677777776653222 1235
Q ss_pred CcEEEEccHHHHHHHhc-cCcCCCCccEEEEcccccccC-cchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcC
Q psy13286 75 VHLIIATPGRILDLMDK-QVANMDHCKILVLDEADKLLS-QDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLK 152 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~-~~~~~~~~~lvViDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 152 (351)
.+|+|+||+++.+++.+ ...++.++++||+||+|++.+ .++...+..+...++..+|++++|||++.....+...++.
T Consensus 211 ~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 290 (479)
T 3fmp_B 211 EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVP 290 (479)
T ss_dssp CSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSS
T ss_pred CCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcC
Confidence 78999999999998865 455678999999999999887 5788888888888889999999999999999999999998
Q ss_pred CCeEEeeccc-cccCCceEEEEEcCc-ccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHH
Q psy13286 153 DPYEINLMEE-LTLKGVTQYYAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQA 230 (351)
Q Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 230 (351)
++..+..... .....+.+.+..+.. ..+...+..++.....+++||||+++..++.+++.|...++.+..+||+++..
T Consensus 291 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~ 370 (479)
T 3fmp_B 291 DPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVE 370 (479)
T ss_dssp SEEEEEEC------------------------------------------------------------------------
T ss_pred CCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHH
Confidence 8887776543 334455555555544 46777888888877788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCC------ChhhHhhhccccccCCCceeEEEEeccch-HH
Q psy13286 231 HRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPK------MAETYLHRIGRSGRYGHLGIAINLITYED-RY 303 (351)
Q Consensus 231 ~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~------s~~~~~q~~GR~gR~~~~~~~i~~~~~~~-~~ 303 (351)
+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|. +...|+||+||+||.|..|.++++++..+ ..
T Consensus 371 ~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~ 450 (479)
T 3fmp_B 371 QRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMN 450 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHH
Confidence 999999999999999999999999999999999999999994 66899999999999999999999998764 77
Q ss_pred HHHHHHHHhccccCCCCcc
Q psy13286 304 ALHRIEKELGTEIKSIPKV 322 (351)
Q Consensus 304 ~~~~l~~~l~~~~~~~~~~ 322 (351)
.+..+++.++..+..++..
T Consensus 451 ~~~~i~~~~~~~~~~l~~~ 469 (479)
T 3fmp_B 451 ILNRIQEHFNKKIERLDTD 469 (479)
T ss_dssp -------------------
T ss_pred HHHHHHHHhCCCceECCCc
Confidence 8899999999888887644
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-46 Score=348.58 Aligned_cols=319 Identities=31% Similarity=0.538 Sum_probs=237.9
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|+|||||| ++|++..+..... ++++||++|+++|+.|+.+++++++...+..+....++..... ...++
T Consensus 162 ll~apTGsGKT~~~~~~il~~l~~~~~-~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 236 (508)
T 3fho_A 162 IGQSQSGTGKTAAFALTMLSRVDASVP-KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDA 236 (508)
T ss_dssp EEECCSSTTSHHHHHHHHHHHSCTTCC-SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCC
T ss_pred EEECCCCccHHHHHHHHHHHHHHhCCC-CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCC
Confidence 478999997 5566666655433 4799999999999999999999998877776666555543222 23368
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccC-cchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLS-QDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
+|+|+||+++.+.+.+....+.++++||+||+|++.+ .++...+..+...++...|++++|||+++....+...+..++
T Consensus 237 ~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~ 316 (508)
T 3fho_A 237 QIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNA 316 (508)
T ss_dssp SEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTC
T ss_pred CEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCC
Confidence 9999999999999988888889999999999999887 578888889999999999999999999999999999888887
Q ss_pred eEEeeccc-cccCCceEEEEEc-CcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHH
Q psy13286 155 YEINLMEE-LTLKGVTQYYAFV-QERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHR 232 (351)
Q Consensus 155 ~~~~~~~~-~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 232 (351)
..+..... .....+.+.+... ....+...+..++....++++||||+++++++.+++.|...+..+..+||+++..+|
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R 396 (508)
T 3fho_A 317 NEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQR 396 (508)
T ss_dssp EEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTT
T ss_pred eEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHH
Confidence 77665432 3334455555554 345677888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCC------CChhhHhhhccccccCCCceeEEEEecc-chHHHH
Q psy13286 233 NRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFP------KMAETYLHRIGRSGRYGHLGIAINLITY-EDRYAL 305 (351)
Q Consensus 233 ~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p------~s~~~~~q~~GR~gR~~~~~~~i~~~~~-~~~~~~ 305 (351)
..+++.|++|+.+|||||+++++|+|+|++++||+++.| .|...|+||+||+||.|..|.+++++.. ++...+
T Consensus 397 ~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~ 476 (508)
T 3fho_A 397 DAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEM 476 (508)
T ss_dssp GGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSH
T ss_pred HHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHH
Confidence 999999999999999999999999999999999999999 7899999999999999999999999985 566778
Q ss_pred HHHHHHhccccCCCCcccc
Q psy13286 306 HRIEKELGTEIKSIPKVID 324 (351)
Q Consensus 306 ~~l~~~l~~~~~~~~~~~~ 324 (351)
..+++.++..+.++|..-.
T Consensus 477 ~~i~~~~~~~i~~l~~~~~ 495 (508)
T 3fho_A 477 NAIQEYFQRPITRVPTDDY 495 (508)
T ss_dssp HHHHHHSCCCCC-------
T ss_pred HHHHHHHCCCcccCCCccH
Confidence 9999999999998875543
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.1e-43 Score=334.65 Aligned_cols=296 Identities=17% Similarity=0.194 Sum_probs=235.1
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH---HH-
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM---RI- 71 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~- 71 (351)
+|.||||+| ++|++.. ++++|||+|+++|+.|+.+.++++ ++++..+.|+........ .+
T Consensus 63 lv~~pTGsGKTl~~~lpal~~-------~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~ 131 (591)
T 2v1x_A 63 FLVMPTGGGKSLCYQLPALCS-------DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMV 131 (591)
T ss_dssp EEECCTTSCTTHHHHHHHHTS-------SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHHHHHc-------CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhh
Confidence 478999997 5565542 369999999999999999999887 788888888876544322 22
Q ss_pred --hCCCcEEEEccHHHH------HHHhccCcCCCCccEEEEcccccccCcc--hHHHHHH--HHHhCCCCCcEEEEEeeC
Q psy13286 72 --YQKVHLIIATPGRIL------DLMDKQVANMDHCKILVLDEADKLLSQD--FKGMLDH--VISILPHERQILLYSATF 139 (351)
Q Consensus 72 --~~~~~Ilv~Tp~~l~------~~l~~~~~~~~~~~lvViDE~h~~~~~~--~~~~~~~--~~~~~~~~~~~i~~SaT~ 139 (351)
....+|+|+||++|. +.+. ....+.+++++||||||++.+++ |.+.+.. .+....+..+++++|||+
T Consensus 132 ~~~~~~~Ilv~Tpe~L~~~~~~~~~l~-~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~ 210 (591)
T 2v1x_A 132 NKNSELKLIYVTPEKIAKSKMFMSRLE-KAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATA 210 (591)
T ss_dssp CTTCCCCEEEECHHHHHSCHHHHHHHH-HHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSC
T ss_pred cccCCCCEEEEChhHhhccHHHHHHHH-hhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 347899999999874 2222 23346789999999999998865 6555443 233333568899999999
Q ss_pred cchHHHHHHHhcCCCeEEeeccccccCCceEEEEEcCc--ccHHHHHHHHHhh-CCCCcEEEEeCchHHHHHHHHHHHhc
Q psy13286 140 PLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQE--RQKVHCLNTLFSK-LQINQSIIFCNSTQRVELLAKKITEL 216 (351)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~~l~~~l~~-~~~~~~lIf~~~~~~~~~l~~~L~~~ 216 (351)
++.....+..++..+....+......+++...+..... ..+...+..++.. .+++++||||++++.++.+++.|+..
T Consensus 211 ~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~ 290 (591)
T 2v1x_A 211 TNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL 290 (591)
T ss_dssp CHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC
Confidence 99888888777766554444445555555443333322 2445666666654 36789999999999999999999999
Q ss_pred CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEE
Q psy13286 217 GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINL 296 (351)
Q Consensus 217 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~ 296 (351)
++.+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.|.+.|+||+||+||.|..|.++++
T Consensus 291 g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 291 GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchHHHHHHH
Q psy13286 297 ITYEDRYALHRI 308 (351)
Q Consensus 297 ~~~~~~~~~~~l 308 (351)
++..|...+..+
T Consensus 371 ~~~~D~~~~~~~ 382 (591)
T 2v1x_A 371 YGFGDIFRISSM 382 (591)
T ss_dssp ECHHHHHHHHHH
T ss_pred EChHHHHHHHHH
Confidence 998886665544
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.2e-42 Score=324.50 Aligned_cols=294 Identities=19% Similarity=0.226 Sum_probs=230.8
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHH-
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRI- 71 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~- 71 (351)
+|.||||+| ++|++.. .+++||++|+++|+.|+.+.++++ ++++..++++....... ..+
T Consensus 44 lv~apTGsGKTl~~~lp~l~~-------~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~ 112 (523)
T 1oyw_A 44 LVVMPTGGGKSLCYQIPALLL-------NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCR 112 (523)
T ss_dssp EEECSCHHHHHHHHHHHHHHS-------SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHHHHHh-------CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHh
Confidence 578999996 5565532 268999999999999999998765 77888888877654332 222
Q ss_pred hCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcc--hHHHHHH---HHHhCCCCCcEEEEEeeCcchHHHH
Q psy13286 72 YQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQD--FKGMLDH---VISILPHERQILLYSATFPLTVKNF 146 (351)
Q Consensus 72 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~--~~~~~~~---~~~~~~~~~~~i~~SaT~~~~~~~~ 146 (351)
....+|+++||+++........+...++++||+||||++.+++ |...+.. +...+ +..+++++|||+++.....
T Consensus 113 ~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~ 191 (523)
T 1oyw_A 113 TGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQD 191 (523)
T ss_dssp HTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHH
T ss_pred cCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHH
Confidence 3468999999999953222222335788999999999998765 5554443 44445 3578999999999876654
Q ss_pred HHHhc--CCCeEEeeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEec
Q psy13286 147 MEKHL--KDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIH 224 (351)
Q Consensus 147 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~ 224 (351)
+...+ .++... ......+++. +.......+...+..++...+++++||||++++.++.+++.|+..++.+..+|
T Consensus 192 i~~~l~~~~~~~~--~~~~~r~~l~--~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h 267 (523)
T 1oyw_A 192 IVRLLGLNDPLIQ--ISSFDRPNIR--YMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYH 267 (523)
T ss_dssp HHHHHTCCSCEEE--ECCCCCTTEE--EEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHhCCCCCeEE--eCCCCCCceE--EEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEec
Confidence 44433 233322 2233334333 33334456777888888888888999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHH
Q psy13286 225 ARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYA 304 (351)
Q Consensus 225 ~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~ 304 (351)
|+++.++|.++++.|++|+.+|||||+++++|+|+|++++||++++|.|.+.|.||+||+||.|.+|.++++++..|...
T Consensus 268 ~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~ 347 (523)
T 1oyw_A 268 AGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAW 347 (523)
T ss_dssp TTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888766
Q ss_pred HHHHHH
Q psy13286 305 LHRIEK 310 (351)
Q Consensus 305 ~~~l~~ 310 (351)
++.+..
T Consensus 348 ~~~~~~ 353 (523)
T 1oyw_A 348 LRRCLE 353 (523)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555443
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.6e-44 Score=325.91 Aligned_cols=290 Identities=18% Similarity=0.211 Sum_probs=228.4
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcch---HHHHHHHh
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNL---RDDIMRIY 72 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~ 72 (351)
+++|||||| ++|++..+ ..++++||++|+++|+.|+.+.+++++. .++++..++|+.+. ...+..+.
T Consensus 40 lv~apTGsGKT~~~l~~~~~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~ 114 (414)
T 3oiy_A 40 TMVAPTGVGKTTFGMMTALWLA----RKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFE 114 (414)
T ss_dssp ECCSCSSSSHHHHHHHHHHHHH----TTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHh----cCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhh
Confidence 578999997 33333332 3458999999999999999999999987 78999999999987 44555555
Q ss_pred CC-CcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccC-----------cchHHH-HHHHHHhCC-----------C
Q psy13286 73 QK-VHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLS-----------QDFKGM-LDHVISILP-----------H 128 (351)
Q Consensus 73 ~~-~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~-----------~~~~~~-~~~~~~~~~-----------~ 128 (351)
.+ ++|+|+||+++.+.+.. ..+.++++||+||+|++.. .+|... +..+...++ .
T Consensus 115 ~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 192 (414)
T 3oiy_A 115 EDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLK 192 (414)
T ss_dssp HTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCC
T ss_pred cCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCC
Confidence 54 99999999999887764 4567999999999997653 445555 666766655 7
Q ss_pred CCcEEEEEee-CcchHH-HHHHHhcCCCeEEeec-cccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHH
Q psy13286 129 ERQILLYSAT-FPLTVK-NFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQR 205 (351)
Q Consensus 129 ~~~~i~~SaT-~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~ 205 (351)
..|++++||| .+.... .+...... +... ......++.+.+... .+...+..++... ++++||||+++..
T Consensus 193 ~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~l~~~-~~~~lVF~~~~~~ 264 (414)
T 3oiy_A 193 PGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQTEEE 264 (414)
T ss_dssp CCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEESS---CCHHHHHHHHHHH-CSSEEEEESSHHH
T ss_pred CceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeecc---CHHHHHHHHHHHc-CCCEEEEECCHHH
Confidence 7899999999 554443 23333222 1111 122334455555544 4566667777763 4899999999999
Q ss_pred HHHHHHHHHhcCCeEE-EeccCCCHHHHHHHHHHhhcCCccEEEE----eCcCCCCCCCCC-CCEEEEecCC--CChhhH
Q psy13286 206 VELLAKKITELGYCCY-YIHARMAQAHRNRVFHDFRSGLCRNLVC----SDLFTRGIDVQA-VNVVINFDFP--KMAETY 277 (351)
Q Consensus 206 ~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~ilv~----T~~~~~G~di~~-~~~Vi~~~~p--~s~~~~ 277 (351)
++.+++.|+..++.+. .+||. +|. ++.|++|+.+|||| |+++++|+|+|+ +++||++++| .+...|
T Consensus 265 ~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y 338 (414)
T 3oiy_A 265 GKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTY 338 (414)
T ss_dssp HHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHH
T ss_pred HHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHH
Confidence 9999999999999998 88884 333 99999999999999 999999999999 9999999999 999999
Q ss_pred hhhccccccCC----CceeEEEEeccchHHHHHHHHHHhc
Q psy13286 278 LHRIGRSGRYG----HLGIAINLITYEDRYALHRIEKELG 313 (351)
Q Consensus 278 ~q~~GR~gR~~----~~~~~i~~~~~~~~~~~~~l~~~l~ 313 (351)
+||+||+||.| ..|.+++++ .|...+..+++.++
T Consensus 339 ~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 339 IQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp HHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred HHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 99999999987 479999999 66677888888888
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.9e-40 Score=314.40 Aligned_cols=301 Identities=13% Similarity=0.189 Sum_probs=176.8
Q ss_pred CcccccCCc-----chhhhcccCcCCC-CCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKI-TSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
+|++|||+| ++|++..+..... .++++||++|+++|+.|+.+.+++++...++++..++|+......+.....+
T Consensus 26 l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 105 (556)
T 4a2p_A 26 LICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIED 105 (556)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHH
T ss_pred EEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCC
Confidence 478999997 6666666544322 2579999999999999999999999998899999999998776666666667
Q ss_pred CcEEEEccHHHHHHHhccCc-CCCCccEEEEcccccccCcchHHHH-HHHHHh----CCCCCcEEEEEeeCcch------
Q psy13286 75 VHLIIATPGRILDLMDKQVA-NMDHCKILVLDEADKLLSQDFKGML-DHVISI----LPHERQILLYSATFPLT------ 142 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~-~~~~~~lvViDE~h~~~~~~~~~~~-~~~~~~----~~~~~~~i~~SaT~~~~------ 142 (351)
++|+|+||+++.+.+..... .+.++++||+||||++.+.+....+ ...... ....++++++|||++..
T Consensus 106 ~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~ 185 (556)
T 4a2p_A 106 SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIE 185 (556)
T ss_dssp CSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHH
T ss_pred CCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHH
Confidence 99999999999999988777 7899999999999999887643332 222222 13567899999998531
Q ss_pred -----HHHHHHHh------------------cCCCeEEeeccccccCC----------------------ceE-------
Q psy13286 143 -----VKNFMEKH------------------LKDPYEINLMEELTLKG----------------------VTQ------- 170 (351)
Q Consensus 143 -----~~~~~~~~------------------~~~~~~~~~~~~~~~~~----------------------~~~------- 170 (351)
+..+.... ...+............. ...
T Consensus 186 ~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (556)
T 4a2p_A 186 ETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKK 265 (556)
T ss_dssp HHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------C
T ss_pred HHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 11111111 11111110000000000 000
Q ss_pred ---------EE---------------------------------------------------------------------
Q psy13286 171 ---------YY--------------------------------------------------------------------- 172 (351)
Q Consensus 171 ---------~~--------------------------------------------------------------------- 172 (351)
+.
T Consensus 266 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 345 (556)
T 4a2p_A 266 DFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTEL 345 (556)
T ss_dssp CCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred ccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHH
Confidence 00
Q ss_pred --------------------EEcCcccHHHHHHHHHhh----CCCCcEEEEeCchHHHHHHHHHHHhc------------
Q psy13286 173 --------------------AFVQERQKVHCLNTLFSK----LQINQSIIFCNSTQRVELLAKKITEL------------ 216 (351)
Q Consensus 173 --------------------~~~~~~~k~~~l~~~l~~----~~~~~~lIf~~~~~~~~~l~~~L~~~------------ 216 (351)
.......|...+..++.. .++.++||||+++..++.+++.|+..
T Consensus 346 ~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 425 (556)
T 4a2p_A 346 EQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLM 425 (556)
T ss_dssp HHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--
T ss_pred HHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEE
Confidence 000012355555555543 56789999999999999999999875
Q ss_pred CCeEEEeccCCCHHHHHHHHHHhhc-CCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEE
Q psy13286 217 GYCCYYIHARMAQAHRNRVFHDFRS-GLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAIN 295 (351)
Q Consensus 217 ~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~ 295 (351)
|.....+||+|+..+|.++++.|++ |+.+|||||+++++|+|+|++++||+||+|+++..|+||+|| ||. ..|.++.
T Consensus 426 g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~ 503 (556)
T 4a2p_A 426 GRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCIL 503 (556)
T ss_dssp ----------------------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEE
T ss_pred ccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEE
Confidence 5556677888999999999999999 999999999999999999999999999999999999999999 999 7899999
Q ss_pred EeccchHH
Q psy13286 296 LITYEDRY 303 (351)
Q Consensus 296 ~~~~~~~~ 303 (351)
++...+..
T Consensus 504 l~~~~~~~ 511 (556)
T 4a2p_A 504 VTSKTEVV 511 (556)
T ss_dssp EESCHHHH
T ss_pred EEeCcchH
Confidence 99887543
No 20
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.4e-40 Score=313.52 Aligned_cols=305 Identities=15% Similarity=0.196 Sum_probs=205.0
Q ss_pred CcccccCCc-----chhhhcccCcCC-CCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAK-ITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
++++|||+| ++|++..+.... ..++++||++|+++|+.|+.+.+++++...++++..++|+......+.....+
T Consensus 23 l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 102 (555)
T 3tbk_A 23 IICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIED 102 (555)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHH
T ss_pred EEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcC
Confidence 478999997 666666654432 22479999999999999999999999998899999999999776666666667
Q ss_pred CcEEEEccHHHHHHHhccCc-CCCCccEEEEcccccccCcc-hHHHHHHHHHh-C----CCCCcEEEEEeeCcchH----
Q psy13286 75 VHLIIATPGRILDLMDKQVA-NMDHCKILVLDEADKLLSQD-FKGMLDHVISI-L----PHERQILLYSATFPLTV---- 143 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~-~~~~~~lvViDE~h~~~~~~-~~~~~~~~~~~-~----~~~~~~i~~SaT~~~~~---- 143 (351)
++|+|+||+++.+.+..... .+.++++||+||||++.+.+ +...+...+.. . ...++++++|||+....
T Consensus 103 ~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~ 182 (555)
T 3tbk_A 103 NDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTA 182 (555)
T ss_dssp CSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSH
T ss_pred CCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccH
Confidence 99999999999999988776 68899999999999998874 33333333332 2 24578999999995421
Q ss_pred HHH------HHHhcCCCeEEeecc-------ccccCCceEEEEEc-----------------------------------
Q psy13286 144 KNF------MEKHLKDPYEINLME-------ELTLKGVTQYYAFV----------------------------------- 175 (351)
Q Consensus 144 ~~~------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~----------------------------------- 175 (351)
... +...+... .+.... ..............
T Consensus 183 ~~~~~~~~~l~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 261 (555)
T 3tbk_A 183 EEAMQHICKLCAALDAS-VIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQI 261 (555)
T ss_dssp HHHHHHHHHHHHHTTCS-EEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGC
T ss_pred HHHHHHHHHHHHhcCCe-eeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 111 11111111 111100 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy13286 176 -------------------------------------------------------------------------------- 175 (351)
Q Consensus 176 -------------------------------------------------------------------------------- 175 (351)
T Consensus 262 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (555)
T 3tbk_A 262 QNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAF 341 (555)
T ss_dssp CSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC---
T ss_pred ccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhccc
Confidence
Q ss_pred --------------------------CcccHHHHHHHHHhh----CCCCcEEEEeCchHHHHHHHHHHHhcC--------
Q psy13286 176 --------------------------QERQKVHCLNTLFSK----LQINQSIIFCNSTQRVELLAKKITELG-------- 217 (351)
Q Consensus 176 --------------------------~~~~k~~~l~~~l~~----~~~~~~lIf~~~~~~~~~l~~~L~~~~-------- 217 (351)
....|...+..++.. .++.++||||+++..++.+++.|+..+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~ 421 (555)
T 3tbk_A 342 DETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPG 421 (555)
T ss_dssp --HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEE
T ss_pred chHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeee
Confidence 012345555555543 466899999999999999999998863
Q ss_pred ----CeEEEeccCCCHHHHHHHHHHhhc-CCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCcee
Q psy13286 218 ----YCCYYIHARMAQAHRNRVFHDFRS-GLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGI 292 (351)
Q Consensus 218 ----~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~ 292 (351)
.+...+||+|+..+|.++++.|++ |+.+|||||+++++|+|+|++++||+||+|+++..|+||+|| ||. ..|.
T Consensus 422 ~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~ 499 (555)
T 3tbk_A 422 ILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSK 499 (555)
T ss_dssp ECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCE
T ss_pred EEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCce
Confidence 344556679999999999999999 999999999999999999999999999999999999999999 998 8899
Q ss_pred EEEEeccchHHHHHHH
Q psy13286 293 AINLITYEDRYALHRI 308 (351)
Q Consensus 293 ~i~~~~~~~~~~~~~l 308 (351)
++.|+...+......+
T Consensus 500 ~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 500 CFLLTSSADVIEKEKA 515 (555)
T ss_dssp EEEEESCHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHH
Confidence 9999998876555555
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4e-41 Score=326.92 Aligned_cols=319 Identities=15% Similarity=0.185 Sum_probs=202.8
Q ss_pred CcccccCCc-----chhhhcccCcCC-CCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAK-ITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
+|++|||+| ++|++..+.... ..++++||++|+++|+.|+.+.+++++...++++..++|+......+..+..+
T Consensus 32 iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 111 (696)
T 2ykg_A 32 IICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN 111 (696)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHT
T ss_pred EEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccC
Confidence 578999997 566666554332 22379999999999999999999999988889999999998765555555567
Q ss_pred CcEEEEccHHHHHHHhccCc-CCCCccEEEEcccccccCcc-hHHHHHHHHHh-----CCCCCcEEEEEeeCcc------
Q psy13286 75 VHLIIATPGRILDLMDKQVA-NMDHCKILVLDEADKLLSQD-FKGMLDHVISI-----LPHERQILLYSATFPL------ 141 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~-~~~~~~lvViDE~h~~~~~~-~~~~~~~~~~~-----~~~~~~~i~~SaT~~~------ 141 (351)
++|+|+||++|.+.+.++.+ .+.++++||+||||++.+.. +...+...+.. .+..++++++|||+..
T Consensus 112 ~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~ 191 (696)
T 2ykg_A 112 NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTT 191 (696)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSH
T ss_pred CCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccH
Confidence 99999999999999988766 68899999999999987654 22233222222 2466899999999861
Q ss_pred -hHHHHHH----------------------HhcCCCeEEeecccc-----------------------------------
Q psy13286 142 -TVKNFME----------------------KHLKDPYEINLMEEL----------------------------------- 163 (351)
Q Consensus 142 -~~~~~~~----------------------~~~~~~~~~~~~~~~----------------------------------- 163 (351)
.....+. .+...|.........
T Consensus 192 ~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~ 271 (696)
T 2ykg_A 192 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQ 271 (696)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCC
T ss_pred HHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 1111111 111111111000000
Q ss_pred -----------------------------------------------------------------------------ccC
Q psy13286 164 -----------------------------------------------------------------------------TLK 166 (351)
Q Consensus 164 -----------------------------------------------------------------------------~~~ 166 (351)
...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 351 (696)
T 2ykg_A 272 NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFD 351 (696)
T ss_dssp SCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCC
T ss_pred cccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccc
Confidence 000
Q ss_pred CceEEEEE-------------c---CcccHHHHHHHHHhhC----CCCcEEEEeCchHHHHHHHHHHHhcC----CeEEE
Q psy13286 167 GVTQYYAF-------------V---QERQKVHCLNTLFSKL----QINQSIIFCNSTQRVELLAKKITELG----YCCYY 222 (351)
Q Consensus 167 ~~~~~~~~-------------~---~~~~k~~~l~~~l~~~----~~~~~lIf~~~~~~~~~l~~~L~~~~----~~~~~ 222 (351)
.+.+.+.. . ....|...+..++... +++++||||+++..++.+++.|+..+ +.+..
T Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~ 431 (696)
T 2ykg_A 352 EIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 431 (696)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeE
Confidence 00000000 0 1234666777777654 67899999999999999999999987 78888
Q ss_pred e--------ccCCCHHHHHHHHHHhhc-CCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeE
Q psy13286 223 I--------HARMAQAHRNRVFHDFRS-GLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIA 293 (351)
Q Consensus 223 ~--------~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~ 293 (351)
+ |++|+..+|.++++.|++ |+.+|||||+++++|+|+|++++||+||+|+++.+|+||+|| ||. ..|.+
T Consensus 432 l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~ 509 (696)
T 2ykg_A 432 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKC 509 (696)
T ss_dssp -----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEE
T ss_pred EEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceE
Confidence 8 559999999999999998 999999999999999999999999999999999999999999 998 77899
Q ss_pred EEEeccchHHHHHHH----HHHhccccCCCCc
Q psy13286 294 INLITYEDRYALHRI----EKELGTEIKSIPK 321 (351)
Q Consensus 294 i~~~~~~~~~~~~~l----~~~l~~~~~~~~~ 321 (351)
+.+++..+......+ ++.++..+.+++.
T Consensus 510 ~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 541 (696)
T 2ykg_A 510 FLLTSNAGVIEKEQINMYKEKMMNDSILRLQT 541 (696)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999998877555555 5555555555544
No 22
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.2e-39 Score=315.79 Aligned_cols=300 Identities=13% Similarity=0.191 Sum_probs=183.1
Q ss_pred CcccccCCc-----chhhhcccCcCC-CCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAK-ITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
+|++|||+| ++|++..+.... ..++++|||+|+++|+.|+.+.+++++...++++..++|+......+..+..+
T Consensus 267 ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 346 (797)
T 4a2q_A 267 LICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIED 346 (797)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHT
T ss_pred EEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCC
Confidence 478999997 666666654432 12579999999999999999999999988899999999999777666666678
Q ss_pred CcEEEEccHHHHHHHhccCc-CCCCccEEEEcccccccCcchH-HHHHHHHHh----CCCCCcEEEEEeeCcc-------
Q psy13286 75 VHLIIATPGRILDLMDKQVA-NMDHCKILVLDEADKLLSQDFK-GMLDHVISI----LPHERQILLYSATFPL------- 141 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~-~~~~~~lvViDE~h~~~~~~~~-~~~~~~~~~----~~~~~~~i~~SaT~~~------- 141 (351)
++|+|+||+++.+.+.+... .+.++++||+||||++.+.... ..+..+... ....++++++|||+..
T Consensus 347 ~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~ 426 (797)
T 4a2q_A 347 SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIE 426 (797)
T ss_dssp CSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHH
T ss_pred CCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHH
Confidence 99999999999999988776 6889999999999998876533 223233322 1456889999999852
Q ss_pred ----hHHHHHH------------------HhcCCCeEEeecccc-ccCC------------------------ceEE--E
Q psy13286 142 ----TVKNFME------------------KHLKDPYEINLMEEL-TLKG------------------------VTQY--Y 172 (351)
Q Consensus 142 ----~~~~~~~------------------~~~~~~~~~~~~~~~-~~~~------------------------~~~~--~ 172 (351)
.+..+.. .+...+......... .... .... .
T Consensus 427 ~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~ 506 (797)
T 4a2q_A 427 ETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKK 506 (797)
T ss_dssp HHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccc
Confidence 1111111 111111111000000 0000 0000 0
Q ss_pred E--------Ec---------------------------------------------------------------------
Q psy13286 173 A--------FV--------------------------------------------------------------------- 175 (351)
Q Consensus 173 ~--------~~--------------------------------------------------------------------- 175 (351)
. ++
T Consensus 507 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 586 (797)
T 4a2q_A 507 DFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTEL 586 (797)
T ss_dssp CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred cccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHH
Confidence 0 00
Q ss_pred -----------------------CcccHHHHHHHHHhh----CCCCcEEEEeCchHHHHHHHHHHHhc------------
Q psy13286 176 -----------------------QERQKVHCLNTLFSK----LQINQSIIFCNSTQRVELLAKKITEL------------ 216 (351)
Q Consensus 176 -----------------------~~~~k~~~l~~~l~~----~~~~~~lIf~~~~~~~~~l~~~L~~~------------ 216 (351)
....|...+..++.. .++.++||||+++..+..+++.|+..
T Consensus 587 ~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~ 666 (797)
T 4a2q_A 587 EQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLM 666 (797)
T ss_dssp HHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEE
Confidence 012345555555543 56789999999999999999999873
Q ss_pred CCeEEEeccCCCHHHHHHHHHHhhc-CCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEE
Q psy13286 217 GYCCYYIHARMAQAHRNRVFHDFRS-GLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAIN 295 (351)
Q Consensus 217 ~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~ 295 (351)
|.+...+||+|+..+|.++++.|++ |+.+|||||+++++|+|+|++++||+||+|+|+..|+||+|| ||. ..|.++.
T Consensus 667 G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~ 744 (797)
T 4a2q_A 667 GRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCIL 744 (797)
T ss_dssp ---------------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEE
T ss_pred ecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEE
Confidence 5566778899999999999999999 999999999999999999999999999999999999999999 999 8899999
Q ss_pred EeccchH
Q psy13286 296 LITYEDR 302 (351)
Q Consensus 296 ~~~~~~~ 302 (351)
++...+.
T Consensus 745 l~~~~~~ 751 (797)
T 4a2q_A 745 VTSKTEV 751 (797)
T ss_dssp EECCHHH
T ss_pred EEeCCcH
Confidence 9988654
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-39 Score=325.97 Aligned_cols=304 Identities=17% Similarity=0.258 Sum_probs=228.5
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
||+|+|||| .+|++..+ ..+++++|++|+++|+.|+++.+++++. .+..++|+.+. ..++
T Consensus 203 LV~ApTGSGKTlva~l~i~~~l----~~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~ 267 (1108)
T 3l9o_A 203 LVSAHTSAGKTVVAEYAIAQSL----KNKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDA 267 (1108)
T ss_dssp EEECCSSSHHHHHHHHHHHHHH----HTTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSC
T ss_pred EEECCCCCChHHHHHHHHHHHH----hcCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCC
Confidence 578999997 45555544 3347999999999999999999988765 57778887763 3468
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcch--HHHHHHHhcCC
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLT--VKNFMEKHLKD 153 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~--~~~~~~~~~~~ 153 (351)
+|+|+||++|.+++.++...+.++++||+||+|++.+.+++..+..++..++...|++++|||++.. +..++......
T Consensus 268 ~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~ 347 (1108)
T 3l9o_A 268 GCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQ 347 (1108)
T ss_dssp SEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCS
T ss_pred CEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCC
Confidence 9999999999999888777788999999999999999999999999999999999999999998765 34555555555
Q ss_pred CeEEeeccccccCCceEEEEEcCc-------------------------------------------------------c
Q psy13286 154 PYEINLMEELTLKGVTQYYAFVQE-------------------------------------------------------R 178 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------~ 178 (351)
+..+.... ..+....+++..... .
T Consensus 348 ~~~vi~~~-~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (1108)
T 3l9o_A 348 PCHIVYTN-FRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAK 426 (1108)
T ss_dssp CEEEEEEC-CCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CH
T ss_pred CeEEEecC-CCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccch
Confidence 44443321 122222222211100 1
Q ss_pred cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCC---------------------------------------e
Q psy13286 179 QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY---------------------------------------C 219 (351)
Q Consensus 179 ~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~---------------------------------------~ 219 (351)
.+...+...+.....+++||||+++..|+.++..|...++ +
T Consensus 427 ~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 506 (1108)
T 3l9o_A 427 GDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRG 506 (1108)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHT
T ss_pred hHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcC
Confidence 1222344444455677999999999999999999865322 2
Q ss_pred EEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCC--------CChhhHhhhccccccCC--C
Q psy13286 220 CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFP--------KMAETYLHRIGRSGRYG--H 289 (351)
Q Consensus 220 ~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p--------~s~~~~~q~~GR~gR~~--~ 289 (351)
+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+++.| .|+.+|+||+||+||.| .
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~ 586 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDD 586 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCS
T ss_pred eeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCC
Confidence 7899999999999999999999999999999999999999999999976653 46778999999999999 6
Q ss_pred ceeEEEEeccc-hHHHHHHHHHHhccccCCCCccc
Q psy13286 290 LGIAINLITYE-DRYALHRIEKELGTEIKSIPKVI 323 (351)
Q Consensus 290 ~~~~i~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~ 323 (351)
.|.+++++++. +...+. +.+......+...+
T Consensus 587 ~G~~ill~~~~~~~~~~~---~l~~~~~~~L~S~f 618 (1108)
T 3l9o_A 587 RGIVIMMIDEKMEPQVAK---GMVKGQADRLDSAF 618 (1108)
T ss_dssp SEEEEEEECCCCCHHHHH---HHHHCCCCCCCCCC
T ss_pred ceEEEEEecCCcCHHHHH---HHhcCCCccccccc
Confidence 78888888776 333333 33444444444333
No 24
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.1e-39 Score=302.14 Aligned_cols=296 Identities=17% Similarity=0.205 Sum_probs=220.8
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|.++||+| +++++..+. ..++++||++|+++|+.||.+.++++....+.++..++|+...... ......+
T Consensus 27 ll~~~tG~GKT~~~~~~~~~~~~---~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~-~~~~~~~ 102 (494)
T 1wp9_A 27 LIVLPTGLGKTLIAMMIAEYRLT---KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEER-SKAWARA 102 (494)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHH---HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHH-HHHHHHC
T ss_pred EEEcCCCCCHHHHHHHHHHHHHh---cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhh-hhhccCC
Confidence 478999997 333333332 2347999999999999999999998875445588889988775543 2233468
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchH---HHHHHHhcC
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTV---KNFMEKHLK 152 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~---~~~~~~~~~ 152 (351)
+|+|+||+.+...+.++...+.++++||+||||++.+......+........+..+++++|||+.... ..+......
T Consensus 103 ~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~ 182 (494)
T 1wp9_A 103 KVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGI 182 (494)
T ss_dssp SEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHHHTTC
T ss_pred CEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCCCCcHHHHHHHHhcCh
Confidence 99999999999988887778899999999999999876444444444555556788999999997432 233332221
Q ss_pred CCeEEeeccc------cccCCceEEEEE----------------------------------------------------
Q psy13286 153 DPYEINLMEE------LTLKGVTQYYAF---------------------------------------------------- 174 (351)
Q Consensus 153 ~~~~~~~~~~------~~~~~~~~~~~~---------------------------------------------------- 174 (351)
.......... ............
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (494)
T 1wp9_A 183 EHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEM 262 (494)
T ss_dssp CEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHH
T ss_pred heeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHh
Confidence 1111100000 000000000000
Q ss_pred ----------------------------------------------------------------------------cCcc
Q psy13286 175 ----------------------------------------------------------------------------VQER 178 (351)
Q Consensus 175 ----------------------------------------------------------------------------~~~~ 178 (351)
....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (494)
T 1wp9_A 263 AKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDH 342 (494)
T ss_dssp TTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSC
T ss_pred hccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCC
Confidence 0223
Q ss_pred cHHHHHHHHHhh----CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEecc--------CCCHHHHHHHHHHhhcCCccE
Q psy13286 179 QKVHCLNTLFSK----LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHA--------RMAQAHRNRVFHDFRSGLCRN 246 (351)
Q Consensus 179 ~k~~~l~~~l~~----~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~--------~~~~~~r~~~~~~f~~g~~~i 246 (351)
.|...+..++.. .++.++||||+++..++.+++.|+..++.+..+|| +++..+|.++++.|++|+.+|
T Consensus 343 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~v 422 (494)
T 1wp9_A 343 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 422 (494)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSE
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceE
Confidence 355666666665 56889999999999999999999999999999999 999999999999999999999
Q ss_pred EEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccch
Q psy13286 247 LVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYED 301 (351)
Q Consensus 247 lv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~ 301 (351)
||||+++++|+|+|++++||++++|+++..|.||+||+||.|+ |.++.++..++
T Consensus 423 Lv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 423 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred EEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 9999999999999999999999999999999999999999998 99999988764
No 25
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-39 Score=318.02 Aligned_cols=292 Identities=19% Similarity=0.286 Sum_probs=226.2
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|+|||||| .+|++..+ ..+++++|++|+++|++|+++.++++.. ++..++|+.... .++
T Consensus 105 LV~apTGSGKTlva~lai~~~l----~~g~rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~-------~~~ 169 (1010)
T 2xgj_A 105 LVSAHTSAGKTVVAEYAIAQSL----KNKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDA 169 (1010)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH----HTTCEEEEEESSHHHHHHHHHHHHHHHS----CEEEECSSCEEC-------TTC
T ss_pred EEECCCCCChHHHHHHHHHHHh----ccCCeEEEECChHHHHHHHHHHHHHHhC----CEEEEeCCCccC-------CCC
Confidence 578999997 34444433 2347999999999999999999988865 677788877643 358
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHH--HHHHHhcCC
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVK--NFMEKHLKD 153 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~--~~~~~~~~~ 153 (351)
+|+|+||++|.+++.++...+.++++||+||+|++.+.+++..+..++..++...+++++|||+++... ..+......
T Consensus 170 ~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~ 249 (1010)
T 2xgj_A 170 GCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQ 249 (1010)
T ss_dssp SEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTS
T ss_pred CEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCC
Confidence 999999999999888877778999999999999999998888899999999999999999999986532 333333344
Q ss_pred CeEEeeccccccCCceEEEEEcC---------c----------------------------------------------c
Q psy13286 154 PYEINLMEELTLKGVTQYYAFVQ---------E----------------------------------------------R 178 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~---------~----------------------------------------------~ 178 (351)
+..+.... ..+.++.+++.... . .
T Consensus 250 ~~~vi~~~-~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~ 328 (1010)
T 2xgj_A 250 PCHIVYTN-FRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAK 328 (1010)
T ss_dssp CEEEEEEC-CCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------
T ss_pred CeEEEecC-CCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccch
Confidence 44332221 12222333322211 0 1
Q ss_pred cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCC---------------------------------------e
Q psy13286 179 QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY---------------------------------------C 219 (351)
Q Consensus 179 ~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~---------------------------------------~ 219 (351)
.....+...+......++||||+++..++.++..|...++ +
T Consensus 329 ~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 408 (1010)
T 2xgj_A 329 GDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRG 408 (1010)
T ss_dssp CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCC
Confidence 1122344444445567999999999999999999876433 3
Q ss_pred EEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEE----ecC----CCChhhHhhhccccccCCC--
Q psy13286 220 CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVIN----FDF----PKMAETYLHRIGRSGRYGH-- 289 (351)
Q Consensus 220 ~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~----~~~----p~s~~~~~q~~GR~gR~~~-- 289 (351)
+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ ||. |.|+.+|.||+||+||.|.
T Consensus 409 I~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~ 488 (1010)
T 2xgj_A 409 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDD 488 (1010)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCS
T ss_pred eeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCC
Confidence 788999999999999999999999999999999999999999999999 998 8999999999999999987
Q ss_pred ceeEEEEeccc-hHHHHHHH
Q psy13286 290 LGIAINLITYE-DRYALHRI 308 (351)
Q Consensus 290 ~~~~i~~~~~~-~~~~~~~l 308 (351)
.|.+++++++. +...+..+
T Consensus 489 ~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 489 RGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp SEEEEEEECSCCCHHHHHHH
T ss_pred ceEEEEEECCCCCHHHHHHH
Confidence 49999999865 44444444
No 26
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=4.6e-40 Score=328.37 Aligned_cols=290 Identities=18% Similarity=0.209 Sum_probs=227.1
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcch---HHHHHHHh
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNL---RDDIMRIY 72 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~ 72 (351)
+++|||||| ++|++..+ ..++++||++||++|+.|+++.+++++ ..++++..++|+.+. ...+..+.
T Consensus 97 lv~ApTGSGKTl~~l~~il~~~----~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~ 171 (1104)
T 4ddu_A 97 TMVAPTGVGKTTFGMMTALWLA----RKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFE 171 (1104)
T ss_dssp EECCSTTCCHHHHHHHHHHHHH----TTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHHH----hcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 578999997 23333333 445899999999999999999999977 668999999999887 56666666
Q ss_pred CC-CcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccC-----------cchHHH-HHHHHHhCC-----------C
Q psy13286 73 QK-VHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLS-----------QDFKGM-LDHVISILP-----------H 128 (351)
Q Consensus 73 ~~-~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~-----------~~~~~~-~~~~~~~~~-----------~ 128 (351)
.+ ++|+|+||++|.+++.. ..+.++++||+||+|++.. .+|... +..++..++ .
T Consensus 172 ~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~ 249 (1104)
T 4ddu_A 172 EDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLK 249 (1104)
T ss_dssp TSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCC
T ss_pred CCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCC
Confidence 65 99999999999887764 5578999999999987664 556655 677777665 7
Q ss_pred CCcEEEEEee-CcchHHH-HHHHhcCCCeEEeec-cccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHH
Q psy13286 129 ERQILLYSAT-FPLTVKN-FMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQR 205 (351)
Q Consensus 129 ~~~~i~~SaT-~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~ 205 (351)
..|++++||| .+..+.. +....+. +.+. ......++.+.+..+ .+...+..++... ++++||||++++.
T Consensus 250 ~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~---~k~~~L~~ll~~~-~~~~LVF~~s~~~ 321 (1104)
T 4ddu_A 250 PGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQTEEE 321 (1104)
T ss_dssp CCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---CCHHHHHHHHHHH-CSSEEEEESSSHH
T ss_pred CceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---CHHHHHHHHHHhc-CCCEEEEECcHHH
Confidence 7899999999 4544432 2333322 1221 223445566666555 4566667777664 3899999999999
Q ss_pred HHHHHHHHHhcCCeEE-EeccCCCHHHHHHHHHHhhcCCccEEEE----eCcCCCCCCCCC-CCEEEEecCCC-------
Q psy13286 206 VELLAKKITELGYCCY-YIHARMAQAHRNRVFHDFRSGLCRNLVC----SDLFTRGIDVQA-VNVVINFDFPK------- 272 (351)
Q Consensus 206 ~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~ilv~----T~~~~~G~di~~-~~~Vi~~~~p~------- 272 (351)
++.++..|+..++.+. .+||. |.+ ++.|++|+.+|||| |+++++|+|+|+ +++||+||+|.
T Consensus 322 a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~ 395 (1104)
T 4ddu_A 322 GKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLEL 395 (1104)
T ss_dssp HHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSS
T ss_pred HHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCccc
Confidence 9999999999999998 99982 555 99999999999999 999999999999 99999999998
Q ss_pred -----------------------------------------------------------------ChhhHhhhccccccC
Q psy13286 273 -----------------------------------------------------------------MAETYLHRIGRSGRY 287 (351)
Q Consensus 273 -----------------------------------------------------------------s~~~~~q~~GR~gR~ 287 (351)
+..+|+||+||+||.
T Consensus 396 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~ 475 (1104)
T 4ddu_A 396 DKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRI 475 (1104)
T ss_dssp SSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCE
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcc
Confidence 677999999999997
Q ss_pred CCc----eeEEEEeccchHHHHHHHHHHhc
Q psy13286 288 GHL----GIAINLITYEDRYALHRIEKELG 313 (351)
Q Consensus 288 ~~~----~~~i~~~~~~~~~~~~~l~~~l~ 313 (351)
|.+ |.+++++ +|...+..+++.++
T Consensus 476 ~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 476 LNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp ETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred cCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 643 4455555 67777888888775
No 27
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2e-38 Score=308.14 Aligned_cols=287 Identities=20% Similarity=0.251 Sum_probs=215.6
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|+|||||| .+|++..+.. .+++++|++|+++|+.|+++.++++. ..++++...+|+....... ...+
T Consensus 50 lv~apTGsGKT~~~~l~il~~~~~---~~~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~ 122 (715)
T 2va8_A 50 LLTSPTGSGKTLIAEMGIISFLLK---NGGKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW---LKNY 122 (715)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG---GGGC
T ss_pred EEEcCCCCcHHHHHHHHHHHHHHH---CCCeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh---cCCC
Confidence 578999997 4555554432 24799999999999999999986443 4588999999987654431 2368
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCe
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPY 155 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 155 (351)
+|+|+||+++..++.+....+.++++||+||+|.+.+..++..+..++..++ ..+++++|||+++. ..+.. ++..+.
T Consensus 123 ~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~-~l~~~~ 199 (715)
T 2va8_A 123 DIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAK-WLGAEP 199 (715)
T ss_dssp SEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHH-HHTCEE
T ss_pred CEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHH-HhCCCc
Confidence 9999999999998888766688999999999999888788888887776665 78999999999752 33333 333221
Q ss_pred EEeeccccccCCceEE------------EEEcC--------cccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHh
Q psy13286 156 EINLMEELTLKGVTQY------------YAFVQ--------ERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITE 215 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~------------~~~~~--------~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~ 215 (351)
+.. ...+..+... ..... ...+...+...+. +++++||||+++++++.+++.|..
T Consensus 200 -~~~--~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~ 274 (715)
T 2va8_A 200 -VAT--NWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIAN 274 (715)
T ss_dssp -EEC--CCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHH
T ss_pred -cCC--CCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHH
Confidence 111 1111111111 11111 1234444444443 568999999999999999999986
Q ss_pred cC------------------------------------CeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCC
Q psy13286 216 LG------------------------------------YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDV 259 (351)
Q Consensus 216 ~~------------------------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di 259 (351)
.. .++..+||+++.++|..+++.|++|..+|||||+++++|+|+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidi 354 (715)
T 2va8_A 275 YMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNL 354 (715)
T ss_dssp TTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCC
T ss_pred HHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCC
Confidence 42 258999999999999999999999999999999999999999
Q ss_pred CCCCEEEE----ec-------CCCChhhHhhhccccccCCC--ceeEEEEeccchH
Q psy13286 260 QAVNVVIN----FD-------FPKMAETYLHRIGRSGRYGH--LGIAINLITYEDR 302 (351)
Q Consensus 260 ~~~~~Vi~----~~-------~p~s~~~~~q~~GR~gR~~~--~~~~i~~~~~~~~ 302 (351)
|++++||+ || .|.|..+|.||+|||||.|. .|.|+.++...+.
T Consensus 355 p~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 355 PARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp CBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred CceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 99999998 88 89999999999999999874 7999999987763
No 28
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1e-38 Score=310.09 Aligned_cols=306 Identities=19% Similarity=0.257 Sum_probs=230.0
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|+|||||| .+|++..+... +++++|++|+++|+.|+++.++++.. .++++..++|+...... ....+
T Consensus 43 lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~ 115 (720)
T 2zj8_A 43 LISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKY 115 (720)
T ss_dssp EEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGC
T ss_pred EEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCC
Confidence 578999997 35666554322 47999999999999999999965544 48899999997664432 12468
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCe
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPY 155 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 155 (351)
+|+|+||+++..++.+....+.++++||+||+|++.+..++..+..++..+....|++++|||+++. ..+. .++..+.
T Consensus 116 ~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~-~~l~~~~ 193 (720)
T 2zj8_A 116 DIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELA-EWLNAEL 193 (720)
T ss_dssp SEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHH-HHTTEEE
T ss_pred CEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHH-HHhCCcc
Confidence 9999999999998888766688999999999999988888888888888776689999999999753 3333 3443211
Q ss_pred EEeeccccccCCceEEE------EEcC-----cccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc--------
Q psy13286 156 EINLMEELTLKGVTQYY------AFVQ-----ERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL-------- 216 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~------~~~~-----~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~-------- 216 (351)
+. ....+......+ .... ...+...+...+. +++++||||+++++++.++..|...
T Consensus 194 -~~--~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~ 268 (720)
T 2zj8_A 194 -IV--SDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKP 268 (720)
T ss_dssp -EE--CCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHH
T ss_pred -cC--CCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChh
Confidence 11 111111111111 1111 1234455555443 4589999999999999999999753
Q ss_pred -------------------------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEE----
Q psy13286 217 -------------------------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVIN---- 267 (351)
Q Consensus 217 -------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~---- 267 (351)
..++..+||+++.++|..+++.|++|..+|||||+++++|+|+|++++||+
T Consensus 269 ~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~ 348 (720)
T 2zj8_A 269 EIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWR 348 (720)
T ss_dssp HHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEE
T ss_pred hHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCee
Confidence 124899999999999999999999999999999999999999999999998
Q ss_pred ec----CCCChhhHhhhccccccCC--CceeEEEEeccchHHHHHHHHHHhccccCCCCcc
Q psy13286 268 FD----FPKMAETYLHRIGRSGRYG--HLGIAINLITYEDRYALHRIEKELGTEIKSIPKV 322 (351)
Q Consensus 268 ~~----~p~s~~~~~q~~GR~gR~~--~~~~~i~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 322 (351)
|| .|.|..+|.||+|||||.| ..|.|+.++...+.. ..+++.+..+...+...
T Consensus 349 yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~--~~~~~~~~~~~~~i~s~ 407 (720)
T 2zj8_A 349 YSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR--EVMNHYIFGKPEKLFSQ 407 (720)
T ss_dssp CCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH--HHHHHHTTSCCCCCCCC
T ss_pred ecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH--HHHHHHhcCCCCCcEee
Confidence 66 5899999999999999987 478999999887722 23445555455544443
No 29
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.2e-38 Score=307.07 Aligned_cols=286 Identities=19% Similarity=0.281 Sum_probs=218.7
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|+|||||| .+|++..+.. +++++|++|+++|+.|+++.++++. ..++++..++|+...... ....+
T Consensus 44 lv~apTGsGKT~~~~l~il~~~~~----~~~~l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~ 115 (702)
T 2p6r_A 44 LLAMPTAAGKTLLAEMAMVREAIK----GGKSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDC 115 (702)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTC
T ss_pred EEEcCCccHHHHHHHHHHHHHHHh----CCcEEEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCC
Confidence 578999997 4555555432 4799999999999999999986543 348899999998764432 12478
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhC---CCCCcEEEEEeeCcchHHHHHHHhcC
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISIL---PHERQILLYSATFPLTVKNFMEKHLK 152 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~---~~~~~~i~~SaT~~~~~~~~~~~~~~ 152 (351)
+|+|+||+++..++.+....+.++++||+||+|.+.+.+++..+..++..+ .+..|++++|||+++ ...+.. ++.
T Consensus 116 ~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~ 193 (702)
T 2p6r_A 116 DIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLD 193 (702)
T ss_dssp SEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTT
T ss_pred CEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhC
Confidence 999999999999988876668899999999999998877777776665544 567899999999985 333433 443
Q ss_pred CCeEEeeccccccCCceEEEE------EcCc-------ccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc---
Q psy13286 153 DPYEINLMEELTLKGVTQYYA------FVQE-------RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL--- 216 (351)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~------~~~~-------~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~--- 216 (351)
.+. +.. ...+.++...+. .... ..+...+...+. +++++||||+++++++.+++.|...
T Consensus 194 ~~~-~~~--~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~ 268 (702)
T 2p6r_A 194 ADY-YVS--DWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAK 268 (702)
T ss_dssp CEE-EEC--CCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCc-ccC--CCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 222 111 111111111111 1111 114555555553 4688999999999999999998753
Q ss_pred ---------------------------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEE--
Q psy13286 217 ---------------------------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVIN-- 267 (351)
Q Consensus 217 ---------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~-- 267 (351)
+.++..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 269 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~ 348 (702)
T 2p6r_A 269 YVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSL 348 (702)
T ss_dssp TCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCS
T ss_pred hcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCc
Confidence 235788999999999999999999999999999999999999999999998
Q ss_pred --ec---CCCChhhHhhhccccccCC--CceeEEEEeccch
Q psy13286 268 --FD---FPKMAETYLHRIGRSGRYG--HLGIAINLITYED 301 (351)
Q Consensus 268 --~~---~p~s~~~~~q~~GR~gR~~--~~~~~i~~~~~~~ 301 (351)
|| .|.|..+|.||+||+||.| ..|.|+.++...+
T Consensus 349 ~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 349 YRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp EEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred eeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 66 7899999999999999988 4789999998887
No 30
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=4.3e-38 Score=311.86 Aligned_cols=300 Identities=13% Similarity=0.195 Sum_probs=182.4
Q ss_pred CcccccCCc-----chhhhcccCcCCC-CCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKI-TSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
+|+++||+| ++|++..+..... .++++|||+|+++|+.|+.+.+++++...++++..++|+.........+..+
T Consensus 267 ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~ 346 (936)
T 4a2w_A 267 LICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIED 346 (936)
T ss_dssp EEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHH
T ss_pred EEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccC
Confidence 478999997 5666666554321 1478999999999999999999999998899999999998766555555567
Q ss_pred CcEEEEccHHHHHHHhccCc-CCCCccEEEEcccccccCcch-HHHHHHHHHh----CCCCCcEEEEEeeCcch------
Q psy13286 75 VHLIIATPGRILDLMDKQVA-NMDHCKILVLDEADKLLSQDF-KGMLDHVISI----LPHERQILLYSATFPLT------ 142 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~-~~~~~~lvViDE~h~~~~~~~-~~~~~~~~~~----~~~~~~~i~~SaT~~~~------ 142 (351)
++|+|+||++|.+.+.+... .+.++++||+||||++.+.+. ...+..+... ....++++++|||+...
T Consensus 347 ~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~ 426 (936)
T 4a2w_A 347 SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIE 426 (936)
T ss_dssp CSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHH
T ss_pred CCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHH
Confidence 89999999999999987766 678899999999999887643 3333333332 24567899999998521
Q ss_pred -----HHHHH------------------HHhcCCCeEEeeccccccC-C---------------------------ceE-
Q psy13286 143 -----VKNFM------------------EKHLKDPYEINLMEELTLK-G---------------------------VTQ- 170 (351)
Q Consensus 143 -----~~~~~------------------~~~~~~~~~~~~~~~~~~~-~---------------------------~~~- 170 (351)
+..+. ..+...+............ . ...
T Consensus 427 ~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~ 506 (936)
T 4a2w_A 427 ETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKK 506 (936)
T ss_dssp HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 11111 1111111111100000000 0 000
Q ss_pred ---------EEE--------------------------------------------------------------------
Q psy13286 171 ---------YYA-------------------------------------------------------------------- 173 (351)
Q Consensus 171 ---------~~~-------------------------------------------------------------------- 173 (351)
+..
T Consensus 507 ~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 586 (936)
T 4a2w_A 507 DFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTEL 586 (936)
T ss_dssp CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHH
Confidence 000
Q ss_pred ---------------------EcCcccHHHHHHHHHhh----CCCCcEEEEeCchHHHHHHHHHHHhc------------
Q psy13286 174 ---------------------FVQERQKVHCLNTLFSK----LQINQSIIFCNSTQRVELLAKKITEL------------ 216 (351)
Q Consensus 174 ---------------------~~~~~~k~~~l~~~l~~----~~~~~~lIf~~~~~~~~~l~~~L~~~------------ 216 (351)
......|...+..++.. .++.++||||+++..++.+++.|+..
T Consensus 587 e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~ 666 (936)
T 4a2w_A 587 EQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLM 666 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEe
Confidence 00012345555556654 35689999999999999999999986
Q ss_pred CCeEEEeccCCCHHHHHHHHHHhhc-CCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEE
Q psy13286 217 GYCCYYIHARMAQAHRNRVFHDFRS-GLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAIN 295 (351)
Q Consensus 217 ~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~ 295 (351)
|.....+||+|+..+|.++++.|++ |+.+|||||+++++|+|+|++++||+||+|+|+..|+||+|| ||. ..|.++.
T Consensus 667 G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~ 744 (936)
T 4a2w_A 667 GRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCIL 744 (936)
T ss_dssp ---------------------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEE
T ss_pred cCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEE
Confidence 5566677899999999999999999 999999999999999999999999999999999999999999 998 7788898
Q ss_pred EeccchH
Q psy13286 296 LITYEDR 302 (351)
Q Consensus 296 ~~~~~~~ 302 (351)
++...+.
T Consensus 745 Li~~~t~ 751 (936)
T 4a2w_A 745 VTSKTEV 751 (936)
T ss_dssp EESCHHH
T ss_pred EEeCCCH
Confidence 8887643
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.2e-39 Score=325.50 Aligned_cols=293 Identities=16% Similarity=0.238 Sum_probs=226.9
Q ss_pred CcccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCc----eEEEEECCcchHHH---HH
Q psy13286 1 MVQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNV----KVMVTTGGTNLRDD---IM 69 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~----~v~~~~~~~~~~~~---~~ 69 (351)
+++|||||| .+|++..+.. .++++||++||++|+.|+.+.+++++...++ ++..++|+.+...+ ..
T Consensus 75 lv~apTGSGKTl~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~ 151 (1054)
T 1gku_B 75 AATAPTGVGKTSFGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQ 151 (1054)
T ss_dssp ECCCCBTSCSHHHHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHhh---cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHh
Confidence 578999997 4565555432 3579999999999999999999999988888 89999999886553 33
Q ss_pred HHhCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhC-----------CCCCcEEEEEee
Q psy13286 70 RIYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISIL-----------PHERQILLYSAT 138 (351)
Q Consensus 70 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~-----------~~~~~~i~~SaT 138 (351)
.+.+ ++|+|+||++|.+++.+ +.+++++|+||+|++++ ++..+..++..+ +...|.+++|||
T Consensus 152 ~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT 224 (1054)
T 1gku_B 152 NLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVST 224 (1054)
T ss_dssp SGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECC
T ss_pred hccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEec
Confidence 3444 99999999999987765 56899999999999988 446666666665 356789999999
Q ss_pred CcchHHHHHHHhcCCCeEEeec-cccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcC
Q psy13286 139 FPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELG 217 (351)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~ 217 (351)
++.. ..+...++.++..+.+. ......++.+.+. ...+...+..+++.. ++++||||++++.++.+++.|+..
T Consensus 225 ~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~- 298 (1054)
T 1gku_B 225 ATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK- 298 (1054)
T ss_dssp CCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-
T ss_pred CCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-
Confidence 9876 42222222222222222 1223344555544 345666677777765 478999999999999999999988
Q ss_pred CeEEEeccCCCHHHHHHHHHHhhcCCccEEEE----eCcCCCCCCCCCC-CEEEEecCC---------------------
Q psy13286 218 YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC----SDLFTRGIDVQAV-NVVINFDFP--------------------- 271 (351)
Q Consensus 218 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~----T~~~~~G~di~~~-~~Vi~~~~p--------------------- 271 (351)
+.+..+||++ ..+++.|++|+.+|||| |+++++|+|+|++ ++||++|.|
T Consensus 299 ~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~ 373 (1054)
T 1gku_B 299 FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLA 373 (1054)
T ss_dssp SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHH
T ss_pred cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHH
Confidence 9999999998 36789999999999999 8999999999995 999999999
Q ss_pred --------------------------------------------------CChhhHhhhccccccCCCce--eEEEEecc
Q psy13286 272 --------------------------------------------------KMAETYLHRIGRSGRYGHLG--IAINLITY 299 (351)
Q Consensus 272 --------------------------------------------------~s~~~~~q~~GR~gR~~~~~--~~i~~~~~ 299 (351)
.+..+|+||+||+||.|..| .+++++..
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~ 453 (1054)
T 1gku_B 374 YLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLE 453 (1054)
T ss_dssp TTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEe
Confidence 78999999999999987775 47888888
Q ss_pred chHHHHHHHHHHhcc
Q psy13286 300 EDRYALHRIEKELGT 314 (351)
Q Consensus 300 ~~~~~~~~l~~~l~~ 314 (351)
+|...+..+++.++.
T Consensus 454 ~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 454 DDSELLSAFIERAKL 468 (1054)
T ss_dssp SCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHhh
Confidence 888888999998875
No 32
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=6.9e-38 Score=296.29 Aligned_cols=293 Identities=13% Similarity=0.169 Sum_probs=222.3
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+.+|+||+| +||++... .. ++.++||+||++||.|..+++..+....++++..+.|+.+.... ....++
T Consensus 100 Iaea~TGeGKTlaf~LP~~l~a---L~-g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r--~~~~~~ 173 (844)
T 1tf5_A 100 IAEMKTGEGKTLTSTLPVYLNA---LT-GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEK--REAYAA 173 (844)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH---TT-SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHH--HHHHHS
T ss_pred EEEccCCcHHHHHHHHHHHHHH---Hc-CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCC
Confidence 357999996 66665322 12 46899999999999999999999999999999999999875443 233469
Q ss_pred cEEEEccHHH-HHHHhcc------CcCCCCccEEEEccccccc-Ccc---------------hHHHHHHHHHhCC-----
Q psy13286 76 HLIIATPGRI-LDLMDKQ------VANMDHCKILVLDEADKLL-SQD---------------FKGMLDHVISILP----- 127 (351)
Q Consensus 76 ~Ilv~Tp~~l-~~~l~~~------~~~~~~~~lvViDE~h~~~-~~~---------------~~~~~~~~~~~~~----- 127 (351)
+|+|+||.+| .+++..+ ...+..+.++|+||||+++ +.. |...+..+...++
T Consensus 174 dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y 253 (844)
T 1tf5_A 174 DITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDY 253 (844)
T ss_dssp SEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSB
T ss_pred CEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccc
Confidence 9999999999 6766654 2457899999999999987 543 6677888888886
Q ss_pred ----CCCcEE-----------------EEEeeCcch---HHHHHH--HhcC-CCeEE-----------------------
Q psy13286 128 ----HERQIL-----------------LYSATFPLT---VKNFME--KHLK-DPYEI----------------------- 157 (351)
Q Consensus 128 ----~~~~~i-----------------~~SaT~~~~---~~~~~~--~~~~-~~~~~----------------------- 157 (351)
+..|++ ++|||.+.. +...+. .++. +...+
T Consensus 254 ~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~s 333 (844)
T 1tf5_A 254 TYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYS 333 (844)
T ss_dssp CCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCS
T ss_pred eeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccc
Confidence 356666 788886532 222211 1111 11000
Q ss_pred -------------eecc-c--------------------------------------------cccCCce---EEEEEcC
Q psy13286 158 -------------NLME-E--------------------------------------------LTLKGVT---QYYAFVQ 176 (351)
Q Consensus 158 -------------~~~~-~--------------------------------------------~~~~~~~---~~~~~~~ 176 (351)
.+.. . ...+... ..+....
T Consensus 334 dGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~ 413 (844)
T 1tf5_A 334 EGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRT 413 (844)
T ss_dssp TTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESS
T ss_pred hhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeC
Confidence 0000 0 0000000 1134455
Q ss_pred cccHHHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCC
Q psy13286 177 ERQKVHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFT 254 (351)
Q Consensus 177 ~~~k~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 254 (351)
..+|...+...+.. ..+.++||||+|++.++.++..|+..|+.+..+||++...+|..+.+.|+.| .|+|||++++
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAg 491 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAG 491 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSS
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccc
Confidence 66788888887764 3467899999999999999999999999999999999888887666677666 6999999999
Q ss_pred CCCCCC--------CCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccch
Q psy13286 255 RGIDVQ--------AVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYED 301 (351)
Q Consensus 255 ~G~di~--------~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~ 301 (351)
+|+||+ +..+||+++.|.|...|.||+||+||.|.+|.+++|++.+|
T Consensus 492 RG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 492 RGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp TTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred cCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 999999 78899999999999999999999999999999999998766
No 33
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.4e-37 Score=308.07 Aligned_cols=292 Identities=17% Similarity=0.205 Sum_probs=219.3
Q ss_pred CcccccCCc--c---hhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT--Q---FLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~--~---l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|.|||||| + +|+...+ ..+++++|++|+++|+.|+++.++++.. ++++..++|+.... .+.
T Consensus 58 lv~apTGsGKTlv~~~~i~~~~----~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~~-------~~~ 124 (997)
T 4a4z_A 58 FVAAHTSAGKTVVAEYAIAMAH----RNMTKTIYTSPIKALSNQKFRDFKETFD--DVNIGLITGDVQIN-------PDA 124 (997)
T ss_dssp EEECCTTSCSHHHHHHHHHHHH----HTTCEEEEEESCGGGHHHHHHHHHTTC----CCEEEECSSCEEC-------TTS
T ss_pred EEEECCCCcHHHHHHHHHHHHH----hcCCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEEEeCCCccC-------CCC
Confidence 578999997 2 3333322 2347999999999999999999877643 67888899887532 358
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc---C
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL---K 152 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~---~ 152 (351)
+|+|+||++|.+.+......+.++++||+||+|++.+.+++..+..++..++...+++++|||+++.. .+...+. .
T Consensus 125 ~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~-ef~~~l~~~~~ 203 (997)
T 4a4z_A 125 NCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTY-EFANWIGRTKQ 203 (997)
T ss_dssp SEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHH-HHHHHHHHHHT
T ss_pred CEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCCCCChH-HHHHHHhcccC
Confidence 99999999999988877777889999999999999999888889999999999999999999987653 2222221 1
Q ss_pred CCeEEeeccccccCCceEEE------------------------------------------------------------
Q psy13286 153 DPYEINLMEELTLKGVTQYY------------------------------------------------------------ 172 (351)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 172 (351)
.+..+. .....+.++.+++
T Consensus 204 ~~~~vi-~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg 282 (997)
T 4a4z_A 204 KNIYVI-STPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRD 282 (997)
T ss_dssp CCEEEE-ECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------------------------
T ss_pred CceEEE-ecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccc
Confidence 111111 0111111111111
Q ss_pred ---------------------------------EEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCC-
Q psy13286 173 ---------------------------------AFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY- 218 (351)
Q Consensus 173 ---------------------------------~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~- 218 (351)
.......+...+...+......++||||++++.++.++..|...++
T Consensus 283 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~ 362 (997)
T 4a4z_A 283 GRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFC 362 (997)
T ss_dssp ----------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCC
T ss_pred cccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCC
Confidence 1111233456677777777778999999999999999999976544
Q ss_pred --------------------------------------eEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCC
Q psy13286 219 --------------------------------------CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQ 260 (351)
Q Consensus 219 --------------------------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~ 260 (351)
++..+|++|++.+|..+++.|++|..+|||||+++++|+|+|
T Consensus 363 ~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP 442 (997)
T 4a4z_A 363 NNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLP 442 (997)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCC
T ss_pred CHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCC
Confidence 578999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCC---------ChhhHhhhccccccCC--CceeEEEEec--cchHHHHHHH
Q psy13286 261 AVNVVINFDFPK---------MAETYLHRIGRSGRYG--HLGIAINLIT--YEDRYALHRI 308 (351)
Q Consensus 261 ~~~~Vi~~~~p~---------s~~~~~q~~GR~gR~~--~~~~~i~~~~--~~~~~~~~~l 308 (351)
+ ..||+++.|. |+.+|+||+||+||.| ..|.+++++. ..+...++.+
T Consensus 443 ~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 443 T-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp C-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred C-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHH
Confidence 9 5666655554 9999999999999998 4677887773 2344444444
No 34
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=5.1e-38 Score=305.27 Aligned_cols=287 Identities=15% Similarity=0.209 Sum_probs=193.3
Q ss_pred CcccccCCc-----chhhhcccCcC--CCCCceEEEEcCCHHHHHHH-HHHHHHHHhhCCceEEEEECCcchHHHHHHHh
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPA--KITSKATLIIVPTRELALQT-SQICIELAKHLNVKVMVTTGGTNLRDDIMRIY 72 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~--~~~~~~~lil~P~~~L~~q~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 72 (351)
+|.+|||+| ++|++..+... ...++++|||+|+++|+.|+ .+.+++++.. ++++..++|+......+..+.
T Consensus 26 ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~ 104 (699)
T 4gl2_A 26 IICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVV 104 (699)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TSCEEEEC----CCCCHHHHH
T ss_pred EEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-CceEEEEeCCcchhhHHHhhh
Confidence 578999997 56665554432 12237899999999999999 9999999865 488999999987665555556
Q ss_pred CCCcEEEEccHHHHHHH------hccCcCCCCccEEEEcccccccCcc-hHHHHHHHHHh----C---------CCCCcE
Q psy13286 73 QKVHLIIATPGRILDLM------DKQVANMDHCKILVLDEADKLLSQD-FKGMLDHVISI----L---------PHERQI 132 (351)
Q Consensus 73 ~~~~Ilv~Tp~~l~~~l------~~~~~~~~~~~lvViDE~h~~~~~~-~~~~~~~~~~~----~---------~~~~~~ 132 (351)
..++|+|+||++|.+.+ ....+.+..+++||+||||++.... +...+..++.. . ...+++
T Consensus 105 ~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~i 184 (699)
T 4gl2_A 105 KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQI 184 (699)
T ss_dssp HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEE
T ss_pred cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEE
Confidence 78999999999999887 3445667899999999999886533 22222222221 1 155789
Q ss_pred EEEEeeCcch-----------HHHHHHHhcCCCeEEeec-----cccccCCceEEEEEcC--------------------
Q psy13286 133 LLYSATFPLT-----------VKNFMEKHLKDPYEINLM-----EELTLKGVTQYYAFVQ-------------------- 176 (351)
Q Consensus 133 i~~SaT~~~~-----------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------------------- 176 (351)
+++|||+... +..+.............. ......+...+.....
T Consensus 185 l~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~ 264 (699)
T 4gl2_A 185 LGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTY 264 (699)
T ss_dssp EEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHH
T ss_pred EEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHH
Confidence 9999999862 121211111100000000 0000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy13286 177 -------------------------------------------------------------------------------- 176 (351)
Q Consensus 177 -------------------------------------------------------------------------------- 176 (351)
T Consensus 265 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 344 (699)
T 4gl2_A 265 CQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDD 344 (699)
T ss_dssp HTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------
T ss_pred hccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence
Q ss_pred ----------------------------------cccH----HHHHHHHHhhCC-CCcEEEEeCchHHHHHHHHHHHhc-
Q psy13286 177 ----------------------------------ERQK----VHCLNTLFSKLQ-INQSIIFCNSTQRVELLAKKITEL- 216 (351)
Q Consensus 177 ----------------------------------~~~k----~~~l~~~l~~~~-~~~~lIf~~~~~~~~~l~~~L~~~- 216 (351)
...| ...+...+...+ ++++||||+++..++.+++.|+..
T Consensus 345 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~ 424 (699)
T 4gl2_A 345 LKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENE 424 (699)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSC
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCc
Confidence 0011 112222233334 789999999999999999999987
Q ss_pred -----CCeEEEeccC--------CCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccc
Q psy13286 217 -----GYCCYYIHAR--------MAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGR 283 (351)
Q Consensus 217 -----~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR 283 (351)
|+.+..+||+ |+..+|.++++.|++|+.+|||||+++++|+|+|++++||+||+|+|+..|+||+||
T Consensus 425 ~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GR 504 (699)
T 4gl2_A 425 KFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR 504 (699)
T ss_dssp SCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTT
T ss_pred cccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCC
Confidence 8999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q psy13286 284 SGRYG 288 (351)
Q Consensus 284 ~gR~~ 288 (351)
+||.|
T Consensus 505 Arr~g 509 (699)
T 4gl2_A 505 ARADE 509 (699)
T ss_dssp SCSSS
T ss_pred CCCCC
Confidence 86654
No 35
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.1e-36 Score=287.26 Aligned_cols=293 Identities=18% Similarity=0.210 Sum_probs=203.5
Q ss_pred cccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCc
Q psy13286 2 VQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVH 76 (351)
Q Consensus 2 ~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 76 (351)
.+|+||+| ++|++.... .++.++||+||++||.|.+++++.+....++++..+.|+.+.... ....+++
T Consensus 92 aem~TGsGKTlaf~LP~l~~~l----~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r--~~~~~~d 165 (853)
T 2fsf_A 92 AEMRTGEGKTLTATLPAYLNAL----TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK--REAYAAD 165 (853)
T ss_dssp EECCTTSCHHHHHHHHHHHHHT----TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--HHHHHSS
T ss_pred eeecCCchHHHHHHHHHHHHHH----cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--HHhcCCC
Confidence 57899996 666653322 246899999999999999999999999999999999999875433 3334699
Q ss_pred EEEEccHHH-HHHHhccC------cCCCCccEEEEccccccc-Ccc---------------hHHHHHHHHHhCCC-----
Q psy13286 77 LIIATPGRI-LDLMDKQV------ANMDHCKILVLDEADKLL-SQD---------------FKGMLDHVISILPH----- 128 (351)
Q Consensus 77 Ilv~Tp~~l-~~~l~~~~------~~~~~~~lvViDE~h~~~-~~~---------------~~~~~~~~~~~~~~----- 128 (351)
|+|+||.+| .++++.+. .....+.++|+||||+++ +.+ |...+..+...++.
T Consensus 166 IvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~ 245 (853)
T 2fsf_A 166 ITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKED 245 (853)
T ss_dssp EEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC-------------------------
T ss_pred EEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccc
Confidence 999999999 78887653 457899999999999988 432 44455566555543
Q ss_pred ---------------CCcEE------------------------EEEeeCcch---HHHHH--HHhc--------CC---
Q psy13286 129 ---------------ERQIL------------------------LYSATFPLT---VKNFM--EKHL--------KD--- 153 (351)
Q Consensus 129 ---------------~~~~i------------------------~~SaT~~~~---~~~~~--~~~~--------~~--- 153 (351)
..|++ ++|||.+.. +...+ ..++ .+
T Consensus 246 ~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~v 325 (853)
T 2fsf_A 246 SETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEV 325 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcE
Confidence 33432 678886431 11100 0000 00
Q ss_pred ----------------------C----eEEeeccc-cccCCce-------------------------------------
Q psy13286 154 ----------------------P----YEINLMEE-LTLKGVT------------------------------------- 169 (351)
Q Consensus 154 ----------------------~----~~~~~~~~-~~~~~~~------------------------------------- 169 (351)
+ ..+.+... .....+.
T Consensus 326 viVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IP 405 (853)
T 2fsf_A 326 IIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVP 405 (853)
T ss_dssp -------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECC
T ss_pred EEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcC
Confidence 0 00111000 0000000
Q ss_pred ----------EEEEEcCcccHHHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHH
Q psy13286 170 ----------QYYAFVQERQKVHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFH 237 (351)
Q Consensus 170 ----------~~~~~~~~~~k~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 237 (351)
..+.......|...+...+.. ..+.++||||+|++.++.+++.|++.|+.+..+||++...++..+.+
T Consensus 406 tn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~ 485 (853)
T 2fsf_A 406 TNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQ 485 (853)
T ss_dssp CSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHT
T ss_pred CCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHh
Confidence 113455667889888887754 35678999999999999999999999999999999998888888889
Q ss_pred HhhcCCccEEEEeCcCCCCCCCCCC-------------------------------------CEEEEecCCCChhhHhhh
Q psy13286 238 DFRSGLCRNLVCSDLFTRGIDVQAV-------------------------------------NVVINFDFPKMAETYLHR 280 (351)
Q Consensus 238 ~f~~g~~~ilv~T~~~~~G~di~~~-------------------------------------~~Vi~~~~p~s~~~~~q~ 280 (351)
.|+.| .|+|||+++++|+||+.. .|||+++.|.|...|.|+
T Consensus 486 agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr 563 (853)
T 2fsf_A 486 AGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQL 563 (853)
T ss_dssp TTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHH
T ss_pred cCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhh
Confidence 99988 699999999999999973 599999999999999999
Q ss_pred ccccccCCCceeEEEEeccchH
Q psy13286 281 IGRSGRYGHLGIAINLITYEDR 302 (351)
Q Consensus 281 ~GR~gR~~~~~~~i~~~~~~~~ 302 (351)
.||+||.|.+|.+++|++.+|.
T Consensus 564 ~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 564 RGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HTTSSGGGCCEEEEEEEETTSG
T ss_pred ccccccCCCCeeEEEEecccHH
Confidence 9999999999999999988763
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-37 Score=299.34 Aligned_cols=282 Identities=18% Similarity=0.230 Sum_probs=204.3
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHHh
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRIY 72 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~ 72 (351)
||+++|||| ++|++..+. .+++++|++||++|+.|+++.++++....++++..++|+.+.... +..+.
T Consensus 393 Ll~a~TGSGKTlvall~il~~l~----~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~ 468 (780)
T 1gm5_A 393 LLQGDVGSGKTVVAQLAILDNYE----AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLR 468 (780)
T ss_dssp EEECCSSSSHHHHHHHHHHHHHH----HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHH----cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHh
Confidence 578999997 555555442 347999999999999999999999998889999999999876543 33344
Q ss_pred C-CCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc
Q psy13286 73 Q-KVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL 151 (351)
Q Consensus 73 ~-~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 151 (351)
. .++|+|+||+.+.+ ...+.+++++|+||+|++.... ...+......++++++|||+.+....... .
T Consensus 469 ~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~~--~ 536 (780)
T 1gm5_A 469 NGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ-----REALMNKGKMVDTLVMSATPIPRSMALAF--Y 536 (780)
T ss_dssp SSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----------CCCCSSSSCCCEEEEESSCCCHHHHHHH--T
T ss_pred cCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH-----HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--h
Confidence 4 49999999998854 3457899999999999863322 11222223568899999998776544332 2
Q ss_pred CCCeEEeeccccc--cCCceEEEEEcCcccHHHHHHHHHhhC-CCCcEEEEeCchH--------HHHHHHHHHHh---cC
Q psy13286 152 KDPYEINLMEELT--LKGVTQYYAFVQERQKVHCLNTLFSKL-QINQSIIFCNSTQ--------RVELLAKKITE---LG 217 (351)
Q Consensus 152 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lIf~~~~~--------~~~~l~~~L~~---~~ 217 (351)
.+.. +....... ...+.. ...........+..+.+.. .+.+++|||+..+ .++.+++.|+. .+
T Consensus 537 g~~~-~s~i~~~p~~r~~i~~--~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~ 613 (780)
T 1gm5_A 537 GDLD-VTVIDEMPPGRKEVQT--MLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPE 613 (780)
T ss_dssp CCSS-CEEECCCCSSCCCCEE--CCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC--
T ss_pred CCcc-eeeeeccCCCCcceEE--EEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCC
Confidence 2211 11111111 112221 1222222222333333332 4678999999664 47788888887 46
Q ss_pred CeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCC-ChhhHhhhccccccCCCceeEEEE
Q psy13286 218 YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPK-MAETYLHRIGRSGRYGHLGIAINL 296 (351)
Q Consensus 218 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~-s~~~~~q~~GR~gR~~~~~~~i~~ 296 (351)
+.+..+||+|+.++|.++++.|++|+.+|||||+++++|+|+|++++||+++.|. +...|.||+||+||.|..|.|+++
T Consensus 614 ~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 614 FKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp -CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 8899999999999999999999999999999999999999999999999999996 688899999999999999999999
Q ss_pred eccch
Q psy13286 297 ITYED 301 (351)
Q Consensus 297 ~~~~~ 301 (351)
+++.+
T Consensus 694 ~~~~~ 698 (780)
T 1gm5_A 694 VGDVG 698 (780)
T ss_dssp CCSCC
T ss_pred ECCCC
Confidence 88433
No 37
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=4.1e-39 Score=294.63 Aligned_cols=281 Identities=14% Similarity=0.134 Sum_probs=190.3
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+++|||||| ++|++..+.. .+++++|++||++|+.|+++.++.+ .+....+...
T Consensus 12 lv~a~TGSGKT~~~l~~~l~~~~~---~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~------------ 70 (440)
T 1yks_A 12 VLDFHPGAGKTRRFLPQILAECAR---RRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFS------------ 70 (440)
T ss_dssp EECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCC------------
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHh---cCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccce------------
Confidence 578999997 4555554432 3479999999999999999887532 2222111110
Q ss_pred cEEEEccHHHHHHHhcc--------CcCCCCccEEEEcccccccCcchHHHHHHHHHhC-CCCCcEEEEEeeCcchHHHH
Q psy13286 76 HLIIATPGRILDLMDKQ--------VANMDHCKILVLDEADKLLSQDFKGMLDHVISIL-PHERQILLYSATFPLTVKNF 146 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~--------~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~~~ 146 (351)
.++||+++.+++.++ ...+.+++++|+||+|++ +.++...+..+.... +..+|++++|||+++....+
T Consensus 71 --~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~ 147 (440)
T 1yks_A 71 --AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEF 147 (440)
T ss_dssp --CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS
T ss_pred --eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhh
Confidence 266776654333222 223789999999999987 444433333332222 35789999999998764322
Q ss_pred HHHhcCCCeEEeeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccC
Q psy13286 147 MEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAR 226 (351)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 226 (351)
... ..+. ...........+...+..+ .. .++++||||++++.++.+++.|+..++.+..+||
T Consensus 148 ~~~--~~~~-------------~~~~~~~~~~~~~~~~~~l-~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg- 209 (440)
T 1yks_A 148 PHS--NGEI-------------EDVQTDIPSEPWNTGHDWI-LA-DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR- 209 (440)
T ss_dssp CCC--SSCE-------------EEEECCCCSSCCSSSCHHH-HH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS-
T ss_pred hhc--CCCe-------------eEeeeccChHHHHHHHHHH-Hh-cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc-
Confidence 211 0111 0111111111111112222 22 2578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEE-------------------ecCCCChhhHhhhccccccC
Q psy13286 227 MAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVIN-------------------FDFPKMAETYLHRIGRSGRY 287 (351)
Q Consensus 227 ~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~-------------------~~~p~s~~~~~q~~GR~gR~ 287 (351)
++|.++++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|.||+||+||.
T Consensus 210 ---~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~ 285 (440)
T 1yks_A 210 ---KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRN 285 (440)
T ss_dssp ---SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred ---hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCC
Confidence 4678899999999999999999999999999 999986 88999999999999999998
Q ss_pred -CCceeEEEEe---ccchHHHHHHHHHHhccccCCCCccccccc
Q psy13286 288 -GHLGIAINLI---TYEDRYALHRIEKELGTEIKSIPKVIDPAL 327 (351)
Q Consensus 288 -~~~~~~i~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 327 (351)
|..|.+++++ ++.|...+..+++.+.....++|.......
T Consensus 286 g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~ 329 (440)
T 1yks_A 286 PNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGGMVAPL 329 (440)
T ss_dssp TTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGGCCCCC
T ss_pred CCCCceEEEEeccCChhhhhhhhhhhHHhccccccccccccccc
Confidence 6789999996 677778888888887776666666555443
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=3.8e-36 Score=301.99 Aligned_cols=282 Identities=18% Similarity=0.187 Sum_probs=215.5
Q ss_pred CcccccCCc--ch---hhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHHh
Q psy13286 1 MVQARQEPT--QF---LYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRIY 72 (351)
Q Consensus 1 ~~~a~tgs~--~l---~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~ 72 (351)
||+++||+| .. +++..+ ..+++++|++||++|+.|+++.++++....++++..+++....... +..+.
T Consensus 628 ll~~~TGsGKT~val~aa~~~~----~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~ 703 (1151)
T 2eyq_A 628 LVCGDVGFGKTEVAMRAAFLAV----DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA 703 (1151)
T ss_dssp EEECCCCTTTHHHHHHHHHHHH----TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH----HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 578999997 22 333322 2347999999999999999999999888778899988887654332 33344
Q ss_pred C-CCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc
Q psy13286 73 Q-KVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL 151 (351)
Q Consensus 73 ~-~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 151 (351)
. .++|+|+||+.+.. ...+.++++||+||+|++. ......+..+....+++++|||+.+.........+
T Consensus 704 ~g~~dIvV~T~~ll~~-----~~~~~~l~lvIiDEaH~~g-----~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~ 773 (1151)
T 2eyq_A 704 EGKIDILIGTHKLLQS-----DVKFKDLGLLIVDEEHRFG-----VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 773 (1151)
T ss_dssp TTCCSEEEECTHHHHS-----CCCCSSEEEEEEESGGGSC-----HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTT
T ss_pred cCCCCEEEECHHHHhC-----CccccccceEEEechHhcC-----hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcC
Confidence 4 59999999987642 3457899999999999842 23344455555678999999999887766666555
Q ss_pred CCCeEEeeccccccCCceEEEEEcCcccHHHHHHHHHhh-CCCCcEEEEeCchHHHHHHHHHHHhc--CCeEEEeccCCC
Q psy13286 152 KDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSK-LQINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMA 228 (351)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~ 228 (351)
.+...+... ......+..++..... ......++.. ..+++++|||+++++++.+++.|+.. +..+..+||+|+
T Consensus 774 ~~~~~i~~~-~~~r~~i~~~~~~~~~---~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~ 849 (1151)
T 2eyq_A 774 RDLSIIATP-PARRLAVKTFVREYDS---MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 849 (1151)
T ss_dssp SEEEECCCC-CCBCBCEEEEEEECCH---HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCC
T ss_pred CCceEEecC-CCCccccEEEEecCCH---HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 443333221 1122233333333322 2223333332 34688999999999999999999988 789999999999
Q ss_pred HHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecC-CCChhhHhhhccccccCCCceeEEEEeccc
Q psy13286 229 QAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDF-PKMAETYLHRIGRSGRYGHLGIAINLITYE 300 (351)
Q Consensus 229 ~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~-p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~ 300 (351)
..+|.++++.|++|+.+|||||+++++|+|+|++++||+++. +.+..+|.||+||+||.|..|.|++++...
T Consensus 850 ~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 850 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp HHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred HHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 999999999999999999999999999999999999999998 568899999999999999999999998764
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.4e-35 Score=305.84 Aligned_cols=301 Identities=19% Similarity=0.188 Sum_probs=222.0
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHH-HHhhCCceEEEEECCcchHHHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIE-LAKHLNVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
+|.|||||| .+|++..+.... +++++|++|+++|+.|.++.+++ +....+++|..++|+....... ..+
T Consensus 946 lv~APTGSGKTliaelail~~l~~~~--~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~---~~~ 1020 (1724)
T 4f92_B 946 FVGAPTGSGKTICAEFAILRMLLQSS--EGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL---LGK 1020 (1724)
T ss_dssp EEECCTTSCCHHHHHHHHHHHHHHCT--TCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHH---HHH
T ss_pred EEEeCCCCCchHHHHHHHHHHHHhCC--CCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhh---cCC
Confidence 478999997 566666665443 36899999999999999998865 5566789999999987644332 235
Q ss_pred CcEEEEccHHHHHHHhccCc--CCCCccEEEEcccccccCcchHHHHHHH-------HHhCCCCCcEEEEEeeCcchHHH
Q psy13286 75 VHLIIATPGRILDLMDKQVA--NMDHCKILVLDEADKLLSQDFKGMLDHV-------ISILPHERQILLYSATFPLTVKN 145 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~--~~~~~~lvViDE~h~~~~~~~~~~~~~~-------~~~~~~~~~~i~~SaT~~~~~~~ 145 (351)
++|+|+|||++..+++++.. .+.++++||+||+|.+.+. .+..+..+ ....+.+.|++++|||+++. .+
T Consensus 1021 ~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~d 1098 (1724)
T 4f92_B 1021 GNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KD 1098 (1724)
T ss_dssp CSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HH
T ss_pred CCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HH
Confidence 89999999999887766433 3678999999999988764 45444433 33456789999999999753 44
Q ss_pred HHHHhcCCC-eEEeeccccccCCceEEEEEcCcccHH-------HHH-HHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc
Q psy13286 146 FMEKHLKDP-YEINLMEELTLKGVTQYYAFVQERQKV-------HCL-NTLFSKLQINQSIIFCNSTQRVELLAKKITEL 216 (351)
Q Consensus 146 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~k~-------~~l-~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~ 216 (351)
+.+....++ ....+.....+..+..++......... ..+ ..+....+++++||||+++..++.++..|...
T Consensus 1099 la~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~ 1178 (1724)
T 4f92_B 1099 VAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTT 1178 (1724)
T ss_dssp HHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHH
Confidence 444433332 233344444454555554444332221 112 22334456789999999999999888776431
Q ss_pred ----------------------------------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCC
Q psy13286 217 ----------------------------------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAV 262 (351)
Q Consensus 217 ----------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~ 262 (351)
..++.++|++|++.+|..+.+.|++|.++|||||+++++|+|+|+.
T Consensus 1179 ~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~ 1258 (1724)
T 4f92_B 1179 CAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAH 1258 (1724)
T ss_dssp HHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBS
T ss_pred HhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCcc
Confidence 2468899999999999999999999999999999999999999998
Q ss_pred CEEEE----e------cCCCChhhHhhhccccccCCC--ceeEEEEeccchHHHHHHH
Q psy13286 263 NVVIN----F------DFPKMAETYLHRIGRSGRYGH--LGIAINLITYEDRYALHRI 308 (351)
Q Consensus 263 ~~Vi~----~------~~p~s~~~~~q~~GR~gR~~~--~~~~i~~~~~~~~~~~~~l 308 (351)
.+||. | ..|.++.+|.||+|||||.|. .|.+++++.+.+...++.+
T Consensus 1259 ~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1259 LVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp EEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred EEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHH
Confidence 88873 2 236789999999999999986 6999999988876655443
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.6e-36 Score=312.91 Aligned_cols=302 Identities=19% Similarity=0.242 Sum_probs=222.7
Q ss_pred CcccccCCc-----chhhhcccCcC-------CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPA-------KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI 68 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~-------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 68 (351)
||+|||||| .+|++..+... ...+.++||++|+++|++|+++.+++.+...|++|..++|+......
T Consensus 99 lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~- 177 (1724)
T 4f92_B 99 LLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE- 177 (1724)
T ss_dssp EEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT-
T ss_pred EEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc-
Confidence 578999997 56666666432 23357999999999999999999999999899999999998764332
Q ss_pred HHHhCCCcEEEEccHHHHHHHhccCc--CCCCccEEEEcccccccCcchHHHHHHHHH-------hCCCCCcEEEEEeeC
Q psy13286 69 MRIYQKVHLIIATPGRILDLMDKQVA--NMDHCKILVLDEADKLLSQDFKGMLDHVIS-------ILPHERQILLYSATF 139 (351)
Q Consensus 69 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~--~~~~~~lvViDE~h~~~~~~~~~~~~~~~~-------~~~~~~~~i~~SaT~ 139 (351)
...+++|+|+|||++..++++... .+..+++||+||+|.+.+ ..+..+..++. ..+...|++++|||+
T Consensus 178 --~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl 254 (1724)
T 4f92_B 178 --EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATL 254 (1724)
T ss_dssp --TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSC
T ss_pred --ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEeccc
Confidence 124689999999999766655432 367899999999997765 56666554433 346788999999999
Q ss_pred cchHHHHHHHhcCC-C--eEEeeccccccCCceEEEEEcCcccH---HHHH----HH-HHhhCCCCcEEEEeCchHHHHH
Q psy13286 140 PLTVKNFMEKHLKD-P--YEINLMEELTLKGVTQYYAFVQERQK---VHCL----NT-LFSKLQINQSIIFCNSTQRVEL 208 (351)
Q Consensus 140 ~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~k---~~~l----~~-~l~~~~~~~~lIf~~~~~~~~~ 208 (351)
++. .++.. ++.. + ....+.....+..+.+.+........ ...+ .. +.....++++||||++++.|+.
T Consensus 255 ~N~-~dvA~-wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~ 332 (1724)
T 4f92_B 255 PNY-EDVAT-FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGK 332 (1724)
T ss_dssp TTH-HHHHH-HTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHH
T ss_pred CCH-HHHHH-HhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHH
Confidence 753 33333 3332 1 11222333444445555444433221 1222 22 2223446789999999999999
Q ss_pred HHHHHHhc-------------------------------------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 209 LAKKITEL-------------------------------------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 209 l~~~L~~~-------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
+|+.|.+. ..++.++||+|++++|..+.+.|++|.++|||||+
T Consensus 333 ~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTs 412 (1724)
T 4f92_B 333 TARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTA 412 (1724)
T ss_dssp HHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECH
T ss_pred HHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcc
Confidence 88888541 23588999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCEEEE----ec------CCCChhhHhhhccccccCCC--ceeEEEEeccchHHHHHHH
Q psy13286 252 LFTRGIDVQAVNVVIN----FD------FPKMAETYLHRIGRSGRYGH--LGIAINLITYEDRYALHRI 308 (351)
Q Consensus 252 ~~~~G~di~~~~~Vi~----~~------~p~s~~~~~q~~GR~gR~~~--~~~~i~~~~~~~~~~~~~l 308 (351)
+++.|+|+|+.++||. |+ .|.++.+|.||+|||||.|. .|.++++.+..+...+..+
T Consensus 413 TLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 413 TLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp HHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred hhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHH
Confidence 9999999999998884 44 35689999999999999874 6899998888776555444
No 41
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.9e-35 Score=279.31 Aligned_cols=294 Identities=16% Similarity=0.178 Sum_probs=224.8
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+.+|+||+| +||++...+ . ++.++||+||++||.|..+++..+...+|+++..+.|+.+.... ....++
T Consensus 128 Iaem~TGeGKTLa~~LP~~l~aL---~-g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r--~~~y~~ 201 (922)
T 1nkt_A 128 VAEMKTGEGKTLTCVLPAYLNAL---A-GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDER--RVAYNA 201 (922)
T ss_dssp EEECCTTSCHHHHTHHHHHHHHT---T-TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--HHHHHS
T ss_pred EEEecCCCccHHHHHHHHHHHHH---h-CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCC
Confidence 357899996 666643222 2 36899999999999999999999999999999999999875433 233469
Q ss_pred cEEEEccHHH-HHHHhcc------CcCCCCccEEEEccccccc-Cc---------------chHHHHHHHHHhCC-----
Q psy13286 76 HLIIATPGRI-LDLMDKQ------VANMDHCKILVLDEADKLL-SQ---------------DFKGMLDHVISILP----- 127 (351)
Q Consensus 76 ~Ilv~Tp~~l-~~~l~~~------~~~~~~~~lvViDE~h~~~-~~---------------~~~~~~~~~~~~~~----- 127 (351)
+|+++||.+| +++++.+ ...+..+.++|+||||+++ +. +|...+..+...++
T Consensus 202 DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy 281 (922)
T 1nkt_A 202 DITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHY 281 (922)
T ss_dssp SEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTE
T ss_pred CEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccc
Confidence 9999999999 7887765 2457889999999999988 32 47778888998887
Q ss_pred ----CCCcEE-----------------EEEeeCcch---HHHHHH--HhcC-C-------CeEEeecc------------
Q psy13286 128 ----HERQIL-----------------LYSATFPLT---VKNFME--KHLK-D-------PYEINLME------------ 161 (351)
Q Consensus 128 ----~~~~~i-----------------~~SaT~~~~---~~~~~~--~~~~-~-------~~~~~~~~------------ 161 (351)
+..|++ ++|||.+.. +...+. .++. + +..+.+.+
T Consensus 282 ~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~s 361 (922)
T 1nkt_A 282 EVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYN 361 (922)
T ss_dssp EEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCS
T ss_pred eeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCcccc
Confidence 567777 788987642 222111 1111 1 00000000
Q ss_pred ------------------ccccCCce-----------------------------------------------EEEEEcC
Q psy13286 162 ------------------ELTLKGVT-----------------------------------------------QYYAFVQ 176 (351)
Q Consensus 162 ------------------~~~~~~~~-----------------------------------------------~~~~~~~ 176 (351)
......+. ..+....
T Consensus 362 dGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t 441 (922)
T 1nkt_A 362 EGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKT 441 (922)
T ss_dssp TTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESC
T ss_pred chhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeC
Confidence 00000000 1134455
Q ss_pred cccHHHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCC
Q psy13286 177 ERQKVHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFT 254 (351)
Q Consensus 177 ~~~k~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 254 (351)
...|...+...+.. ..+.++||||+|++.++.+++.|++.|+.+..+|+++...++..+.+.|+.| .|+|||++++
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg 519 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAG 519 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCS
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhh
Confidence 66788888877754 3567899999999999999999999999999999998877777788888888 6999999999
Q ss_pred CCCCCCCC----------------------------------------------------CEEEEecCCCChhhHhhhcc
Q psy13286 255 RGIDVQAV----------------------------------------------------NVVINFDFPKMAETYLHRIG 282 (351)
Q Consensus 255 ~G~di~~~----------------------------------------------------~~Vi~~~~p~s~~~~~q~~G 282 (351)
+|+||+.. .|||+++.|.|...|.|+.|
T Consensus 520 RGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~G 599 (922)
T 1nkt_A 520 RGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRG 599 (922)
T ss_dssp TTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHH
T ss_pred cCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhc
Confidence 99999964 49999999999999999999
Q ss_pred ccccCCCceeEEEEeccchH
Q psy13286 283 RSGRYGHLGIAINLITYEDR 302 (351)
Q Consensus 283 R~gR~~~~~~~i~~~~~~~~ 302 (351)
|+||.|.+|.+++|++.+|.
T Consensus 600 RTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 600 RSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp TSSGGGCCEEEEEEEETTSH
T ss_pred ccccCCCCeeEEEEechhHH
Confidence 99999999999999998764
No 42
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.4e-36 Score=287.13 Aligned_cols=290 Identities=13% Similarity=0.105 Sum_probs=212.1
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+++|||||| ++|++..+.. .++++||++||++|+.|+.+.++ +..+. +.+.... . ....+.
T Consensus 190 lv~a~TGSGKT~~~~lpil~~l~~---~~~~vLvl~PtreLa~Qi~~~l~------~~~v~-~~~~~l~--~--~~tp~~ 255 (618)
T 2whx_A 190 IMDLHPGAGKTKRILPSIVREALK---RRLRTLILAPTRVVAAEMEEALR------GLPIR-YQTPAVK--S--DHTGRE 255 (618)
T ss_dssp EECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT------TSCEE-ECCTTSS--C--CCCSSS
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHh---CCCeEEEEcChHHHHHHHHHHhc------CCcee-Eecccce--e--ccCCCc
Confidence 478999996 5667766543 34799999999999999998875 23333 2221100 0 011234
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCC-CCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILP-HERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
.+.++|.+.+...+... ..+.++++||+||||++ +.++...+..+...++ ...|++++|||++.....+.. .++
T Consensus 256 ~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~ 330 (618)
T 2whx_A 256 IVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNS 330 (618)
T ss_dssp CEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSS
T ss_pred eEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCC
Confidence 57778888876655443 34789999999999987 6667767776666654 678999999999876443222 122
Q ss_pred eEEeeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHH
Q psy13286 155 YEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNR 234 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 234 (351)
..+.+...... . +...+...+.. .++++||||++++.++.+++.|+..++.+..+||+ +|.+
T Consensus 331 ~~~~v~~~~~~------------~-~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~ 392 (618)
T 2whx_A 331 PIEDIEREIPE------------R-SWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDT 392 (618)
T ss_dssp CEEEEECCCCS------------S-CCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHH
T ss_pred ceeeecccCCH------------H-HHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHH
Confidence 22222221110 0 00111222223 25789999999999999999999999999999984 6788
Q ss_pred HHHHhhcCCccEEEEeCcCCCCCCCCCCCEE--------------------EEecCCCChhhHhhhccccccCCC-ceeE
Q psy13286 235 VFHDFRSGLCRNLVCSDLFTRGIDVQAVNVV--------------------INFDFPKMAETYLHRIGRSGRYGH-LGIA 293 (351)
Q Consensus 235 ~~~~f~~g~~~ilv~T~~~~~G~di~~~~~V--------------------i~~~~p~s~~~~~q~~GR~gR~~~-~~~~ 293 (351)
+++.|++|+.+|||||+++++|+|+| +++| ++++.|.+.++|+||+||+||.|. .|.+
T Consensus 393 ~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~a 471 (618)
T 2whx_A 393 EYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQ 471 (618)
T ss_dssp HTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEE
T ss_pred HHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeE
Confidence 99999999999999999999999997 8888 778889999999999999999965 8999
Q ss_pred EEEec---cchHHHHHHHHHHhccccCCCCcccccccc
Q psy13286 294 INLIT---YEDRYALHRIEKELGTEIKSIPKVIDPALY 328 (351)
Q Consensus 294 i~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 328 (351)
++|+. ..|...+..+++.+..+..+++.......+
T Consensus 472 i~l~~~~~~~d~~~l~~le~~i~l~~~~~~~~~~~~~~ 509 (618)
T 2whx_A 472 YVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTLF 509 (618)
T ss_dssp EEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCCCCCCC
T ss_pred EEEccCCchhhHHHHHHHHhHhccccccCCcchhhhcc
Confidence 99997 778888899999887776677666655443
No 43
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=5.8e-37 Score=287.26 Aligned_cols=284 Identities=17% Similarity=0.136 Sum_probs=203.9
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|+++||+| ++|+...+. ..++++|||+|+++|+.|+.+.++++....+.++..++|+...... .....
T Consensus 132 ll~~~tGsGKT~~~~~~~~~~~~---~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~ 205 (510)
T 2oca_A 132 ILNLPTSAGRSLIQALLARYYLE---NYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDA 205 (510)
T ss_dssp EEECCSTTTHHHHHHHHHHHHHH---HCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHh---CCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCC
Confidence 578999997 333333332 2235999999999999999999988866666788888888765443 34578
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHH-HhcCCC
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFME-KHLKDP 154 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~-~~~~~~ 154 (351)
+|+|+||+.+... ....+.++++||+||+|++... .+..++..+....+++++|||++........ ..+..+
T Consensus 206 ~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~~----~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~ 278 (510)
T 2oca_A 206 PVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATGK----SISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGE 278 (510)
T ss_dssp SEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCHH----HHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCS
T ss_pred cEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCcc----cHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCC
Confidence 9999999977442 2334678999999999998663 3556777777788999999999765422111 111122
Q ss_pred eEEeeccc-------cccCCceEEEEEcC---------------------cccHHHHHHHHHhhC---CCCcEEEEeCch
Q psy13286 155 YEINLMEE-------LTLKGVTQYYAFVQ---------------------ERQKVHCLNTLFSKL---QINQSIIFCNST 203 (351)
Q Consensus 155 ~~~~~~~~-------~~~~~~~~~~~~~~---------------------~~~k~~~l~~~l~~~---~~~~~lIf~~~~ 203 (351)
........ .....+........ ...+...+..++... .+.+.+|||+ .
T Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~ 357 (510)
T 2oca_A 279 IFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-V 357 (510)
T ss_dssp EECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-H
T ss_pred eEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-H
Confidence 22211110 00001111111111 012233344444433 3445566666 8
Q ss_pred HHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEe-CcCCCCCCCCCCCEEEEecCCCChhhHhhhcc
Q psy13286 204 QRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS-DLFTRGIDVQAVNVVINFDFPKMAETYLHRIG 282 (351)
Q Consensus 204 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T-~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~G 282 (351)
++++.+++.|...+..+..+||+++..+|.++++.|++|+.+||||| +++++|+|+|++++||++++|+++..|.|++|
T Consensus 358 ~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~G 437 (510)
T 2oca_A 358 SHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIG 437 (510)
T ss_dssp HHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHh
Confidence 99999999999998899999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred ccccCCCceeEEEEec
Q psy13286 283 RSGRYGHLGIAINLIT 298 (351)
Q Consensus 283 R~gR~~~~~~~i~~~~ 298 (351)
|+||.|+.+..+.+++
T Consensus 438 R~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 438 RVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHTTTCCCCCCEEEE
T ss_pred cccccCCCCceEEEEE
Confidence 9999998774454444
No 44
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.8e-35 Score=277.45 Aligned_cols=269 Identities=18% Similarity=0.221 Sum_probs=198.4
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+++|||||| .+|++. .+.+++|++||++|+.|+++.+.+.. +.++....|+.. ...+.
T Consensus 236 lv~ApTGSGKT~a~~l~ll~-------~g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~vG~~~-------~~~~~ 298 (666)
T 3o8b_A 236 HLHAPTGSGKSTKVPAAYAA-------QGYKVLVLNPSVAATLGFGAYMSKAH---GIDPNIRTGVRT-------ITTGA 298 (666)
T ss_dssp EEECCTTSCTTTHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHHH---SCCCEEECSSCE-------ECCCC
T ss_pred EEEeCCchhHHHHHHHHHHH-------CCCeEEEEcchHHHHHHHHHHHHHHh---CCCeeEEECcEe-------ccCCC
Confidence 478999997 233332 24699999999999999998765543 556666677654 34578
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCc--EEEEEeeCcchHHHHHHHhcCC
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQ--ILLYSATFPLTVKNFMEKHLKD 153 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~--~i~~SaT~~~~~~~~~~~~~~~ 153 (351)
+|+|+||++| +.+..+.+.++++||+||+| +.+.+|...+..+...++...+ ++++|||++.... ...
T Consensus 299 ~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~~ 368 (666)
T 3o8b_A 299 PVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPH 368 (666)
T ss_dssp SEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CCC
T ss_pred CEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc------cCC
Confidence 9999999998 45566678899999999997 5677788888888888887766 7778999987421 111
Q ss_pred CeEEeeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHH
Q psy13286 154 PYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRN 233 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 233 (351)
+....+.... ... ......... +....++++||||++++.++.+++.|+..++.+..+||++++++
T Consensus 369 p~i~~v~~~~--~~~---i~~~~~~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-- 434 (666)
T 3o8b_A 369 PNIEEVALSN--TGE---IPFYGKAIP-------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-- 434 (666)
T ss_dssp TTEEEEECBS--CSS---EEETTEEEC-------GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG--
T ss_pred cceEEEeecc--cch---hHHHHhhhh-------hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH--
Confidence 1111111000 000 011111100 23346789999999999999999999999999999999999764
Q ss_pred HHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEE----------Eec-----------CCCChhhHhhhccccccCCCcee
Q psy13286 234 RVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVI----------NFD-----------FPKMAETYLHRIGRSGRYGHLGI 292 (351)
Q Consensus 234 ~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi----------~~~-----------~p~s~~~~~q~~GR~gR~~~~~~ 292 (351)
|.++..+|||||+++++|+|+| +++|| ||| .|.+.++|+||+||+|| |..|.
T Consensus 435 -----r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~ 507 (666)
T 3o8b_A 435 -----IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI 507 (666)
T ss_dssp -----SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE
T ss_pred -----HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE
Confidence 5566679999999999999997 99888 677 89999999999999999 89999
Q ss_pred EEEEeccchHHH--H--HHHHHHhccccCC
Q psy13286 293 AINLITYEDRYA--L--HRIEKELGTEIKS 318 (351)
Q Consensus 293 ~i~~~~~~~~~~--~--~~l~~~l~~~~~~ 318 (351)
+.|++..|... + ..+++..+..+.+
T Consensus 508 -i~lvt~~e~~~~~l~~~~i~~~~~~~~~~ 536 (666)
T 3o8b_A 508 -YRFVTPGERPSGMFDSSVLCECYDAGCAW 536 (666)
T ss_dssp -EEESCCCCBCSSBCCHHHHHHHHHHHHHT
T ss_pred -EEEEecchhhcccccHHHHHHHhcCCccc
Confidence 99998876544 3 5566655554444
No 45
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.5e-35 Score=270.75 Aligned_cols=290 Identities=14% Similarity=0.104 Sum_probs=198.0
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+++|||||| ++|++..+.. .+++++|++||++|+.|+.+.++ +..+....+.... ....+.
T Consensus 23 lv~a~TGsGKT~~~~~~~l~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~-----~~~~~~ 88 (451)
T 2jlq_A 23 IMDLHPGAGKTKRILPSIVREALL---RRLRTLILAPTRVVAAEMEEALR------GLPIRYQTPAVKS-----DHTGRE 88 (451)
T ss_dssp EECCCTTSSCCTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT------TSCEEECCTTCSC-----CCCSSC
T ss_pred EEECCCCCCHhhHHHHHHHHHHHh---cCCcEEEECCCHHHHHHHHHHhc------Cceeeeeeccccc-----cCCCCc
Confidence 478999996 5555544332 34799999999999999998873 3333322222111 112346
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHH-hCCCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVIS-ILPHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~-~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
.|.++|++.+.+.+.+. ..+.++++||+||+|++ +..+......+.. ......|++++|||++.....+ ...++
T Consensus 89 ~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~ 163 (451)
T 2jlq_A 89 IVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPF---PQSNS 163 (451)
T ss_dssp CEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS---CCCSS
T ss_pred eEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCccchhh---hcCCC
Confidence 78999999997766544 34789999999999976 4333333322222 2345789999999998654322 12223
Q ss_pred eEEeeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHH
Q psy13286 155 YEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNR 234 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 234 (351)
..+........... .. +...+... ++++||||+++++++.+++.|+..++.+..+|+++. .+
T Consensus 164 ~~~~~~~~~p~~~~---------~~----~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~ 225 (451)
T 2jlq_A 164 PIEDIEREIPERSW---------NT----GFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DT 225 (451)
T ss_dssp CEEEEECCCCSSCC---------SS----SCHHHHHC-CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HH
T ss_pred ceEecCccCCchhh---------HH----HHHHHHhC-CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HH
Confidence 32322211111000 01 11223333 468999999999999999999999999999999764 57
Q ss_pred HHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEec--------------------CCCChhhHhhhccccccCCC-ceeE
Q psy13286 235 VFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFD--------------------FPKMAETYLHRIGRSGRYGH-LGIA 293 (351)
Q Consensus 235 ~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~--------------------~p~s~~~~~q~~GR~gR~~~-~~~~ 293 (351)
+++.|++|+.+|||||+++++|+|+|+ ++||++| .|.|..+|+||+||+||.|. .|.+
T Consensus 226 ~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~ 304 (451)
T 2jlq_A 226 EYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQ 304 (451)
T ss_dssp HGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEE
T ss_pred HHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccE
Confidence 899999999999999999999999999 9999998 99999999999999999998 7888
Q ss_pred EEEeccch---HHHHHHHHHHhccccCCCCcccccccc
Q psy13286 294 INLITYED---RYALHRIEKELGTEIKSIPKVIDPALY 328 (351)
Q Consensus 294 i~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~~ 328 (351)
+++....+ .......+..+.....++|..+....+
T Consensus 305 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 342 (451)
T 2jlq_A 305 YVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTLF 342 (451)
T ss_dssp EEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCCCCCCC
T ss_pred EEEeCCchhhcchhHHHHHHHHHHhcCCChhHhHHhhc
Confidence 88875431 111222333333444466665544433
No 46
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1e-36 Score=289.83 Aligned_cols=285 Identities=14% Similarity=0.169 Sum_probs=192.6
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHh-CC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIY-QK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~ 74 (351)
+|+|+|||| ++|++..+.. .+++++|++||++|+.|+++.++.+ ++. ...+... ... .+
T Consensus 245 lv~apTGSGKTl~~ll~il~~l~~---~~~~~lilaPTr~La~Q~~~~l~~~----~i~--~~~~~l~------~v~tp~ 309 (673)
T 2wv9_A 245 VLDLHPGAGKTRRILPQIIKDAIQ---KRLRTAVLAPTRVVAAEMAEALRGL----PVR--YLTPAVQ------REHSGN 309 (673)
T ss_dssp EECCCTTTTTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTTTS----CCE--ECCC---------CCCCSC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHh---CCCcEEEEccHHHHHHHHHHHHhcC----Cee--eeccccc------ccCCHH
Confidence 478999996 4555555432 3479999999999999999887643 222 1111000 000 11
Q ss_pred CcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhC-CCCCcEEEEEeeCcchHHHHHHHhcCC
Q psy13286 75 VHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISIL-PHERQILLYSATFPLTVKNFMEKHLKD 153 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~~~~~~~~~~ 153 (351)
.-+-..+...+...+... ..+.++++||+||+|++ +..+...+..+.... +..+|++++|||++..+..+... ..
T Consensus 310 ~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~ 385 (673)
T 2wv9_A 310 EIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NS 385 (673)
T ss_dssp CCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SS
T ss_pred HHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CC
Confidence 123333444443333222 35789999999999987 322222333333333 26789999999998664322211 01
Q ss_pred CeEEeeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHH
Q psy13286 154 PYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRN 233 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 233 (351)
+ ...+.. ..........+.. +.. .++++||||+++++++.+++.|+..++.+..+||+ +|.
T Consensus 386 ~-i~~v~~------------~~~~~~~~~~l~~-l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~ 446 (673)
T 2wv9_A 386 P-VHDVSS------------EIPDRAWSSGFEW-ITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYD 446 (673)
T ss_dssp C-EEEEEC------------CCCSSCCSSCCHH-HHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHH
T ss_pred c-eEEEee------------ecCHHHHHHHHHH-HHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHH
Confidence 1 111110 0111111111222 222 46799999999999999999999999999999993 788
Q ss_pred HHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEE--------------------ecCCCChhhHhhhccccccC-CCcee
Q psy13286 234 RVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVIN--------------------FDFPKMAETYLHRIGRSGRY-GHLGI 292 (351)
Q Consensus 234 ~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~--------------------~~~p~s~~~~~q~~GR~gR~-~~~~~ 292 (351)
++++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+.++|.||+||+||. |+.|.
T Consensus 447 ~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ 525 (673)
T 2wv9_A 447 TEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGD 525 (673)
T ss_dssp HHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCE
T ss_pred HHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCE
Confidence 999999999999999999999999999 999998 56899999999999999999 78999
Q ss_pred EEEEe---ccchHHHHHHHHHHhccccCCCCcccc
Q psy13286 293 AINLI---TYEDRYALHRIEKELGTEIKSIPKVID 324 (351)
Q Consensus 293 ~i~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~ 324 (351)
+++|+ +..|...+..++..+..+..+++..+.
T Consensus 526 ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~~g~~ 560 (673)
T 2wv9_A 526 EYHYGGGTSEDDTMLAHWTEAKILLDNIHLPNGLV 560 (673)
T ss_dssp EEEECSCCCCCCTTBHHHHHHHHHHHTSCBTTTBC
T ss_pred EEEEEecCChhHHHHHHHHHHHHhhhhccCCchhh
Confidence 99996 566777778888777555555555443
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=5e-36 Score=278.28 Aligned_cols=271 Identities=21% Similarity=0.250 Sum_probs=197.0
Q ss_pred CcccccCCc-chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCce-EEEEECCcchHHHHHHHhCCCcEE
Q psy13286 1 MVQARQEPT-QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVK-VMVTTGGTNLRDDIMRIYQKVHLI 78 (351)
Q Consensus 1 ~~~a~tgs~-~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~Il 78 (351)
+|+++||+| .+.++..+... ++++|||+|+++|+.||.+.++++ +++ +..++|+.+ ...+|+
T Consensus 112 ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~---------~~~~Iv 175 (472)
T 2fwr_A 112 CIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLT 175 (472)
T ss_dssp EEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBSSSCB---------CCCSEE
T ss_pred EEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHhC----CCcceEEECCCcC---------CcCCEE
Confidence 478999997 11111111111 479999999999999999998773 777 888888765 357899
Q ss_pred EEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcc-----------------
Q psy13286 79 IATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPL----------------- 141 (351)
Q Consensus 79 v~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~----------------- 141 (351)
|+||+.+...+... ..++++||+||+|++.+..+.. +...+ ...+++++|||+..
T Consensus 176 v~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~ 247 (472)
T 2fwr_A 176 VSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLTATFEREDGRHEILKEVVGGKVF 247 (472)
T ss_dssp EEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEESCCCCTTSGGGSHHHHTCCEEE
T ss_pred EEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEecCccCCCCHHHHHHHHhCCeEe
Confidence 99999997765421 2468999999999999888764 33333 45779999999873
Q ss_pred --hHHHHHHHhcCCCeEEeeccccc---------------------------cCCceEEE--------------------
Q psy13286 142 --TVKNFMEKHLKDPYEINLMEELT---------------------------LKGVTQYY-------------------- 172 (351)
Q Consensus 142 --~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~-------------------- 172 (351)
....+...++..+.......... ...+...+
T Consensus 248 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (472)
T 2fwr_A 248 ELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEAR 327 (472)
T ss_dssp ECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHH
T ss_pred ecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 12222222222211111100000 00000000
Q ss_pred -EEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 173 -AFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 173 -~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
..+....|...+..++....+.++||||++.+.++.+++.|. +..+||+++..+|.++++.|++|+.+|||||+
T Consensus 328 ~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~ 402 (472)
T 2fwr_A 328 RIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQ 402 (472)
T ss_dssp HHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSS
T ss_pred HHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcC
Confidence 001233567788888888888999999999999999999883 56789999999999999999999999999999
Q ss_pred cCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCc-e--eEEEEeccc
Q psy13286 252 LFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHL-G--IAINLITYE 300 (351)
Q Consensus 252 ~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~-~--~~i~~~~~~ 300 (351)
++++|+|+|++++||+++.|+++..|.|++||+||.|+. + .++.+++.+
T Consensus 403 ~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 403 VLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred chhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 999999999999999999999999999999999999855 3 444455543
No 48
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.9e-34 Score=263.21 Aligned_cols=259 Identities=12% Similarity=0.115 Sum_probs=177.4
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
||++||||| ++|++..+. ..+++++|++||++|+.|+.+.++ +..+....+.... ....+.
T Consensus 6 lv~a~TGsGKT~~~l~~~l~~~~---~~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~~~~~ 71 (431)
T 2v6i_A 6 VLDLHPGAGKTRRVLPQLVREAV---KKRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-----ERTGNE 71 (431)
T ss_dssp EEECCTTSCTTTTHHHHHHHHHH---HTTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------------CCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHHH---hCCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----cCCCCc
Confidence 578999997 344553332 234799999999999999998774 4555555544221 111235
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHh-CCCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISI-LPHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
.+.+.|.+.+...+.. ...+.++++||+||+|++ ...+......+... .+..++++++|||+++....+... ..+
T Consensus 72 ~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~--~~~ 147 (431)
T 2v6i_A 72 IVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPS--NSP 147 (431)
T ss_dssp SEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCC--SSC
T ss_pred eEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCC--CCc
Confidence 5677788888665544 345789999999999987 43333333333333 246789999999998743221110 001
Q ss_pred eEEeeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHH
Q psy13286 155 YEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNR 234 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 234 (351)
...... .... .+...+..++... ++++||||+++++++.+++.|+..+..+..+||+ +|.+
T Consensus 148 -i~~~~~------------~~~~-~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~ 208 (431)
T 2v6i_A 148 -IIDEET------------RIPD-KAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFES 208 (431)
T ss_dssp -CEEEEC------------CCCS-SCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHH
T ss_pred -eeeccc------------cCCH-HHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHH
Confidence 011100 0011 1111122233333 5689999999999999999999999999999997 5778
Q ss_pred HHHHhhcCCccEEEEeCcCCCCCCCCCCCE-----------------EEEecCCCChhhHhhhccccccCCC-ceeEEEE
Q psy13286 235 VFHDFRSGLCRNLVCSDLFTRGIDVQAVNV-----------------VINFDFPKMAETYLHRIGRSGRYGH-LGIAINL 296 (351)
Q Consensus 235 ~~~~f~~g~~~ilv~T~~~~~G~di~~~~~-----------------Vi~~~~p~s~~~~~q~~GR~gR~~~-~~~~i~~ 296 (351)
+++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|.||+||+||.|. .+.++++
T Consensus 209 ~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 209 EYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp HTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred HHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 99999999999999999999999999 554 5788899999999999999999985 4555555
Q ss_pred e
Q psy13286 297 I 297 (351)
Q Consensus 297 ~ 297 (351)
.
T Consensus 288 ~ 288 (431)
T 2v6i_A 288 S 288 (431)
T ss_dssp C
T ss_pred c
Confidence 4
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=6e-35 Score=268.66 Aligned_cols=258 Identities=15% Similarity=0.175 Sum_probs=177.7
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|+|||||| ++|++..+.. .++++||++||++|+.|+++.++ +..+....+.... ....+.
T Consensus 25 lv~a~TGsGKT~~~~l~il~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~-----~~t~~~ 90 (459)
T 2z83_A 25 VLDLHPGSGKTRKILPQIIKDAIQ---QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQR-----EHQGNE 90 (459)
T ss_dssp EECCCTTSCTTTTHHHHHHHHHHH---TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC-------------CCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEECchHHHHHHHHHHhc------CceEeEEeccccc-----CCCCCc
Confidence 478999996 5666665532 34799999999999999998875 3333322221110 012234
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccc-----cCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHh
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKL-----LSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKH 150 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~-----~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~ 150 (351)
.+.+.|...+...+... ..+.++++||+||+|++ ...++.. .. ......|++++|||++.....+...
T Consensus 91 ~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~---~~--~~~~~~~~il~SAT~~~~~~~~~~~- 163 (459)
T 2z83_A 91 IVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIA---TK--VELGEAAAIFMTATPPGTTDPFPDS- 163 (459)
T ss_dssp SEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHH---HH--HHTTSCEEEEECSSCTTCCCSSCCC-
T ss_pred EEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHH---HH--hccCCccEEEEEcCCCcchhhhccC-
Confidence 57788888876655443 34789999999999974 2222211 11 1236789999999998654322111
Q ss_pred cCCCeEEeeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHH
Q psy13286 151 LKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQA 230 (351)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 230 (351)
..+... ..... ... +...+..++... ++++||||++++.++.+++.|+..++.+..+|++
T Consensus 164 -~~pi~~-~~~~~------------~~~-~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~---- 223 (459)
T 2z83_A 164 -NAPIHD-LQDEI------------PDR-AWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK---- 223 (459)
T ss_dssp -SSCEEE-EECCC------------CSS-CCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----
T ss_pred -CCCeEE-ecccC------------Ccc-hhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----
Confidence 112111 11100 000 000111223333 5789999999999999999999999999999995
Q ss_pred HHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEE--------------------ecCCCChhhHhhhccccccCCC-
Q psy13286 231 HRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVIN--------------------FDFPKMAETYLHRIGRSGRYGH- 289 (351)
Q Consensus 231 ~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~--------------------~~~p~s~~~~~q~~GR~gR~~~- 289 (351)
+|.++++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|.|..+|+||+||+||.|.
T Consensus 224 ~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~ 302 (459)
T 2z83_A 224 SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ 302 (459)
T ss_dssp CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC
T ss_pred HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCC
Confidence 6778899999999999999999999999999 99999 6799999999999999999997
Q ss_pred ceeEEEEeccc
Q psy13286 290 LGIAINLITYE 300 (351)
Q Consensus 290 ~~~~i~~~~~~ 300 (351)
.|.+++|+...
T Consensus 303 ~G~~~~~~~~~ 313 (459)
T 2z83_A 303 VGDEYHYGGAT 313 (459)
T ss_dssp CCEEEEECSCC
T ss_pred CCeEEEEEccc
Confidence 89999998774
No 50
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.6e-34 Score=278.20 Aligned_cols=288 Identities=18% Similarity=0.243 Sum_probs=207.4
Q ss_pred CcccccCCc---chhhhcccCcC-CCCCceEEEEcCCHHHHHHHHHHHHHHHhh-CCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT---QFLYLNKLTPA-KITSKATLIIVPTRELALQTSQICIELAKH-LNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~---~l~~l~~l~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|++||||| ++|.+...... ...++++++++|+++|+.|+++.+.+.... .+..+........ ......
T Consensus 113 ii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~ 186 (773)
T 2xau_A 113 VFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKT 186 (773)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTC
T ss_pred EEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCC
Confidence 478999997 56666222111 112467999999999999998766444321 1222221111111 012468
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEccccc-ccCcc-hHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCC
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADK-LLSQD-FKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKD 153 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~-~~~~~-~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~ 153 (351)
+|+++||+++.+.+.... .+.++++||+||+|. .++.+ +...+..+.... +..+++++|||++.. . +..++.+
T Consensus 187 ~I~v~T~G~l~r~l~~~~-~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~--~-l~~~~~~ 261 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDH-DLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE--K-FQRYFND 261 (773)
T ss_dssp SEEEEEHHHHHHHHHHST-TCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH--H-HHHHTTS
T ss_pred CEEEECHHHHHHHHhhCc-cccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHH--H-HHHHhcC
Confidence 899999999988765543 478999999999995 44433 233444555444 578899999999643 2 3345554
Q ss_pred CeEEeeccccccCCceEEEEEcCcccHH----HHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHh-----------cCC
Q psy13286 154 PYEINLMEELTLKGVTQYYAFVQERQKV----HCLNTLFSKLQINQSIIFCNSTQRVELLAKKITE-----------LGY 218 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~----~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~-----------~~~ 218 (351)
...+.+... ..++..++......+.. ..+..+.....++++||||+++++++.+++.|+. .++
T Consensus 262 ~~vi~v~gr--~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~ 339 (773)
T 2xau_A 262 APLLAVPGR--TYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPL 339 (773)
T ss_dssp CCEEECCCC--CCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_pred CCcccccCc--ccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCe
Confidence 444433322 23355555444443332 3334444455678999999999999999999985 478
Q ss_pred eEEEeccCCCHHHHHHHHHHhh-----cCCccEEEEeCcCCCCCCCCCCCEEEEecC------------------CCChh
Q psy13286 219 CCYYIHARMAQAHRNRVFHDFR-----SGLCRNLVCSDLFTRGIDVQAVNVVINFDF------------------PKMAE 275 (351)
Q Consensus 219 ~~~~~~~~~~~~~r~~~~~~f~-----~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~------------------p~s~~ 275 (351)
.+..+||+++.++|.++++.|+ +|..+|||||+++++|+|+|++++||+++. |.|..
T Consensus 340 ~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~ 419 (773)
T 2xau_A 340 SVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKA 419 (773)
T ss_dssp EEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHH
T ss_pred EEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHH
Confidence 8999999999999999999999 999999999999999999999999999887 88999
Q ss_pred hHhhhccccccCCCceeEEEEeccchH
Q psy13286 276 TYLHRIGRSGRYGHLGIAINLITYEDR 302 (351)
Q Consensus 276 ~~~q~~GR~gR~~~~~~~i~~~~~~~~ 302 (351)
+|.||+||+||. ..|.|+.++++.+.
T Consensus 420 s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 420 SAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred HHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999 88999999987654
No 51
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=6.9e-33 Score=262.86 Aligned_cols=281 Identities=17% Similarity=0.186 Sum_probs=204.9
Q ss_pred CcccccCCc-chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEE
Q psy13286 1 MVQARQEPT-QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLII 79 (351)
Q Consensus 1 ~~~a~tgs~-~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv 79 (351)
+++|||||| .++++..+... +..+|++|+++|+.|+++.+++. ++++..++|+...... ......++++
T Consensus 159 lv~apTGSGKT~~al~~l~~~----~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~--TpGr~~~il~ 228 (677)
T 3rc3_A 159 FHSGPTNSGKTYHAIQKYFSA----KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ--PNGKQASHVS 228 (677)
T ss_dssp EEECCTTSSHHHHHHHHHHHS----SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS--TTCCCCSEEE
T ss_pred EEEcCCCCCHHHHHHHHHHhc----CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec--CCCcccceeE
Confidence 478999998 55666666544 24499999999999999998665 7888889988764110 0012377899
Q ss_pred EccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCC-CCCcEEEEEeeCcchHHHHHHHhcCCCeEEe
Q psy13286 80 ATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILP-HERQILLYSATFPLTVKNFMEKHLKDPYEIN 158 (351)
Q Consensus 80 ~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~ 158 (351)
+|++.+. ....++++|+||+|++.+.+++..+..++..++ ...+++++|||. +.+..+.... .....+.
T Consensus 229 ~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~ 298 (677)
T 3rc3_A 229 CTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEVR 298 (677)
T ss_dssp EEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEEE
T ss_pred ecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEEE
Confidence 9987663 146789999999999999999988888888887 677899999994 2333333332 3333332
Q ss_pred eccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHH
Q psy13286 159 LMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHD 238 (351)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 238 (351)
...... ... + ... .. ..+.... ...+|||+++++++.+++.|+..++.+..+||+|++++|.++++.
T Consensus 299 ~~~r~~--~l~--~--~~~--~l----~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~ 365 (677)
T 3rc3_A 299 DYKRLT--PIS--V--LDH--AL----ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKK 365 (677)
T ss_dssp ECCCSS--CEE--E--CSS--CC----CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHH
T ss_pred Eeeecc--hHH--H--HHH--HH----HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHH
Confidence 211111 000 0 000 00 0112223 446899999999999999999999999999999999999999999
Q ss_pred hhc--CCccEEEEeCcCCCCCCCCCCCEEEEecC--------------CCChhhHhhhccccccCCCc---eeEEEEecc
Q psy13286 239 FRS--GLCRNLVCSDLFTRGIDVQAVNVVINFDF--------------PKMAETYLHRIGRSGRYGHL---GIAINLITY 299 (351)
Q Consensus 239 f~~--g~~~ilv~T~~~~~G~di~~~~~Vi~~~~--------------p~s~~~~~q~~GR~gR~~~~---~~~i~~~~~ 299 (351)
|++ |+.+|||||+++++|+|+ ++++||+++. |.|..+|.||+||+||.|.. |.++.+...
T Consensus 366 F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 366 FNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp HHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred HHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 999 889999999999999999 8999999998 77999999999999999864 666665544
Q ss_pred chHHHHHHHHHHhcccc
Q psy13286 300 EDRYALHRIEKELGTEI 316 (351)
Q Consensus 300 ~~~~~~~~l~~~l~~~~ 316 (351)
+...++++......++
T Consensus 445 -d~~~~~~~~~~~~~~i 460 (677)
T 3rc3_A 445 -DLSLLKEILKRPVDPI 460 (677)
T ss_dssp -HHHHHHHHHHSCCCCC
T ss_pred -hHHHHHHHHhcCcchh
Confidence 4444555554433333
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=3.6e-33 Score=265.73 Aligned_cols=285 Identities=13% Similarity=0.173 Sum_probs=171.5
Q ss_pred CcccccCCc----chhhhcccCcCC------CCCceEEEEcCCHHHHHHHH-HHHHHHHhhCCceEEEEECCcchHHHHH
Q psy13286 1 MVQARQEPT----QFLYLNKLTPAK------ITSKATLIIVPTRELALQTS-QICIELAKHLNVKVMVTTGGTNLRDDIM 69 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~~~------~~~~~~lil~P~~~L~~q~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 69 (351)
+++++||+| .++++..+.... ..++++|||+|+++|+.|+. +.++.+ +..+..+.++.
T Consensus 202 ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~----~~~~~~~~~~~------- 270 (590)
T 3h1t_A 202 LITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFTPF----GDARHKIEGGK------- 270 (590)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCTTT----CSSEEECCC---------
T ss_pred EEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHHhc----chhhhhhhccC-------
Confidence 478999997 344444443332 14589999999999999999 776554 33343333322
Q ss_pred HHhCCCcEEEEccHHHHHHHhc----cCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHH
Q psy13286 70 RIYQKVHLIIATPGRILDLMDK----QVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKN 145 (351)
Q Consensus 70 ~~~~~~~Ilv~Tp~~l~~~l~~----~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 145 (351)
...+.+|+|+||++|...... ..+....+++||+||||++.... ...+..++..++ ..+++++|||+......
T Consensus 271 -~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~-~~~~l~lTATP~~~~~~ 347 (590)
T 3h1t_A 271 -VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFE-PAFQIGMTATPLREDNR 347 (590)
T ss_dssp -CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHST-TSEEEEEESSCSCTTTH
T ss_pred -CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCC-cceEEEeccccccccch
Confidence 234689999999999876542 23345789999999999987642 233455666664 46799999998754333
Q ss_pred HHHHhcCCCeEEeeccc-c---ccCCceEEEEEc----------------------------Cc-------ccH----HH
Q psy13286 146 FMEKHLKDPYEINLMEE-L---TLKGVTQYYAFV----------------------------QE-------RQK----VH 182 (351)
Q Consensus 146 ~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~----------------------------~~-------~~k----~~ 182 (351)
....++..+........ . ............ .. ..+ ..
T Consensus 348 ~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~ 427 (590)
T 3h1t_A 348 DTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAK 427 (590)
T ss_dssp HHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHH
T ss_pred hHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHH
Confidence 33333333222111000 0 000000000000 00 001 11
Q ss_pred HHHHHHhh-CCCCcEEEEeCchHHHHHHHHHHHhcCCe--------EEEeccCCCHHHHHHHHHHhhcCCcc---EEEEe
Q psy13286 183 CLNTLFSK-LQINQSIIFCNSTQRVELLAKKITELGYC--------CYYIHARMAQAHRNRVFHDFRSGLCR---NLVCS 250 (351)
Q Consensus 183 ~l~~~l~~-~~~~~~lIf~~~~~~~~~l~~~L~~~~~~--------~~~~~~~~~~~~r~~~~~~f~~g~~~---ilv~T 250 (351)
.+...+.. .+.+++||||+++++|+.+++.|+..+.. +..+||.++. +|.++++.|++|+.+ |||||
T Consensus 428 ~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt 506 (590)
T 3h1t_A 428 HLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTS 506 (590)
T ss_dssp HHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEES
T ss_pred HHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEEC
Confidence 23333333 34579999999999999999999876532 6788998764 799999999998766 88899
Q ss_pred CcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCC--ceeEEEEeccc
Q psy13286 251 DLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGH--LGIAINLITYE 300 (351)
Q Consensus 251 ~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~--~~~~i~~~~~~ 300 (351)
+++++|+|+|++++||++++|+|...|.||+||+||.+. .+..+.+++..
T Consensus 507 ~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 507 QLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp STTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred ChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 999999999999999999999999999999999999875 34444444443
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.6e-32 Score=272.38 Aligned_cols=135 Identities=20% Similarity=0.288 Sum_probs=117.9
Q ss_pred ccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHh-cCCeEEEeccCCCHHHHHHHHHHhhcCC--ccEEEEeCcCC
Q psy13286 178 RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITE-LGYCCYYIHARMAQAHRNRVFHDFRSGL--CRNLVCSDLFT 254 (351)
Q Consensus 178 ~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~ilv~T~~~~ 254 (351)
..|...+..++...++.++||||+++..++.+++.|.. .|+.+..+||+|+..+|.++++.|++|+ .+|||||++++
T Consensus 488 ~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~ 567 (968)
T 3dmq_A 488 DPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGS 567 (968)
T ss_dssp SHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTT
T ss_pred cHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhh
Confidence 45788888999888889999999999999999999995 5999999999999999999999999998 99999999999
Q ss_pred CCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHh
Q psy13286 255 RGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKEL 312 (351)
Q Consensus 255 ~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l 312 (351)
+|+|+|++++||++++|+++..|.|++||+||.|+.+.++++....+....+.+.+.+
T Consensus 568 ~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 568 EGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp CSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred cCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999988666654433323333344444
No 54
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.98 E-value=3.9e-30 Score=238.35 Aligned_cols=293 Identities=14% Similarity=0.129 Sum_probs=215.2
Q ss_pred cccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECC------------------
Q psy13286 2 VQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGG------------------ 61 (351)
Q Consensus 2 ~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~------------------ 61 (351)
.+++||+| +.+.+..+..+.. |+.+.|++|+..||.|-++|+..+...+|+++..+.+.
T Consensus 93 aEM~TGEGKTLva~lp~~lnAL~-G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~ 171 (822)
T 3jux_A 93 AEMKTGEGKTLAATMPIYLNALI-GKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAI 171 (822)
T ss_dssp EECCTTSCHHHHTHHHHHHHHTT-SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHH
T ss_pred hhccCCCCccHHHHHHHHHHHhc-CCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcCCCcccccccccchhhhhhh
Confidence 47889996 3333333333444 47899999999999999999999999999999999882
Q ss_pred --------------------------------cchHHHHHHHhCCCcEEEEccHHH-HHHHhccCc------CCCCccEE
Q psy13286 62 --------------------------------TNLRDDIMRIYQKVHLIIATPGRI-LDLMDKQVA------NMDHCKIL 102 (351)
Q Consensus 62 --------------------------------~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~~------~~~~~~lv 102 (351)
.+..+. .....+||..+|...+ .++|+.+.. ....+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~er--r~aY~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~a 249 (822)
T 3jux_A 172 EENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITR--KEAYLCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYA 249 (822)
T ss_dssp HTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCH--HHHHHSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEE
T ss_pred cccccccccccccccccccccccccchhccccCCHHHH--HHHhcCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeE
Confidence 111111 1122489999999999 677775432 24678899
Q ss_pred EEcccccccCc-------------c---hHHHHHHHHHhC----------------------------------------
Q psy13286 103 VLDEADKLLSQ-------------D---FKGMLDHVISIL---------------------------------------- 126 (351)
Q Consensus 103 ViDE~h~~~~~-------------~---~~~~~~~~~~~~---------------------------------------- 126 (351)
||||+|.++=+ . ....+..+...+
T Consensus 250 IVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~ 329 (822)
T 3jux_A 250 IVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNV 329 (822)
T ss_dssp EEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGH
T ss_pred EEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEEECHHHHHHHHHHhCCccccchhhh
Confidence 99999965210 0 000011110000
Q ss_pred ----------------CC-------------------------------------------------------------C
Q psy13286 127 ----------------PH-------------------------------------------------------------E 129 (351)
Q Consensus 127 ----------------~~-------------------------------------------------------------~ 129 (351)
.+ -
T Consensus 330 ~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y 409 (822)
T 3jux_A 330 SLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMY 409 (822)
T ss_dssp HHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHh
Confidence 00 2
Q ss_pred CcEEEEEeeCcchHHHHHHHhcCCCeEEeeccccccCCceE-EEEEcCcccHHHHHHHHHhhC--CCCcEEEEeCchHHH
Q psy13286 130 RQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ-YYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRV 206 (351)
Q Consensus 130 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~l~~~l~~~--~~~~~lIf~~~~~~~ 206 (351)
.++.+||+|.......+.+.|..+ .+.++...+.....+ .........|...+...+... .+.++||||+|++.+
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~s 487 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVYGME--VVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKS 487 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHSCCC--EEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHH
T ss_pred hHHeEECCCCchHHHHHHHHhCCe--EEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHH
Confidence 468899999998877777776544 333332222222322 245566778888888877653 568999999999999
Q ss_pred HHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCC--------CCCEEEEecCCCChhhHh
Q psy13286 207 ELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQ--------AVNVVINFDFPKMAETYL 278 (351)
Q Consensus 207 ~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~--------~~~~Vi~~~~p~s~~~~~ 278 (351)
+.+++.|++.|+.+..+||+....++..+.+.++.| .|+|||+++++|+||+ +..+||+++.|.|...|.
T Consensus 488 E~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~ 565 (822)
T 3jux_A 488 ELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDN 565 (822)
T ss_dssp HHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHH
T ss_pred HHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHH
Confidence 999999999999999999986666666566666666 6999999999999998 566999999999999999
Q ss_pred hhccccccCCCceeEEEEeccch
Q psy13286 279 HRIGRSGRYGHLGIAINLITYED 301 (351)
Q Consensus 279 q~~GR~gR~~~~~~~i~~~~~~~ 301 (351)
||+||+||.|.+|.+++|++.+|
T Consensus 566 qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 566 QLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp HHHTTSSCSSCCCEEEEEEETTS
T ss_pred HhhCccccCCCCeeEEEEechhH
Confidence 99999999999999999999877
No 55
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.97 E-value=1.4e-30 Score=206.23 Aligned_cols=159 Identities=36% Similarity=0.624 Sum_probs=150.3
Q ss_pred ccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc
Q psy13286 162 ELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 241 (351)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 241 (351)
.....++.+.+..+....|...+..++...+++++||||+++..++.+++.|...++.+..+||+|+..+|..+++.|++
T Consensus 4 ~~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 4 GLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp --CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred ccCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34566789999999999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhccccCCCC
Q psy13286 242 GLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIKSIP 320 (351)
Q Consensus 242 g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~~~~ 320 (351)
|+.+|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++++...|...+..+++.++.++.+++
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998887654
No 56
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=1.5e-30 Score=207.59 Aligned_cols=163 Identities=35% Similarity=0.617 Sum_probs=148.4
Q ss_pred cCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCc
Q psy13286 165 LKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLC 244 (351)
Q Consensus 165 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 244 (351)
..++.+++..+....|...+..+++..+++++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 45688999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccc-hHHHHHHHHHHhccccCCCCccc
Q psy13286 245 RNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYE-DRYALHRIEKELGTEIKSIPKVI 323 (351)
Q Consensus 245 ~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~ 323 (351)
++||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++|+... +...+..+++.++.++.++|..+
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999875 56789999999999999999887
Q ss_pred cccc
Q psy13286 324 DPAL 327 (351)
Q Consensus 324 ~~~~ 327 (351)
+...
T Consensus 163 ~~~~ 166 (172)
T 1t5i_A 163 DISS 166 (172)
T ss_dssp ----
T ss_pred chhh
Confidence 6643
No 57
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=9e-31 Score=244.66 Aligned_cols=284 Identities=13% Similarity=0.138 Sum_probs=192.0
Q ss_pred CcccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCc
Q psy13286 1 MVQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVH 76 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 76 (351)
+|.++||+| .++++..+.... ..+++|||||+ +|+.||.+.++++.. +.++..++|+... ......+
T Consensus 60 ilad~~GlGKT~~ai~~i~~~~~~~-~~~~~LIv~P~-~l~~qw~~e~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ 130 (500)
T 1z63_A 60 CLADDMGLGKTLQTIAVFSDAKKEN-ELTPSLVICPL-SVLKNWEEELSKFAP--HLRFAVFHEDRSK-----IKLEDYD 130 (500)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHTT-CCSSEEEEECS-TTHHHHHHHHHHHCT--TSCEEECSSSTTS-----CCGGGSS
T ss_pred EEEeCCCCcHHHHHHHHHHHHHhcC-CCCCEEEEccH-HHHHHHHHHHHHHCC--CceEEEEecCchh-----ccccCCc
Confidence 356788886 444444443332 33789999995 699999999998865 4566666666532 1123578
Q ss_pred EEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcch-HHHH---------
Q psy13286 77 LIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLT-VKNF--------- 146 (351)
Q Consensus 77 Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~-~~~~--------- 146 (351)
|+|+||+.+..... +....+++||+||||++.+... .....+..++ ..+.+++|||+... ..++
T Consensus 131 ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p 204 (500)
T 1z63_A 131 IILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-SKYRIALTGTPIENKVDDLWSIMTFLNP 204 (500)
T ss_dssp EEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-EEEEEEECSSCSTTCHHHHHHHHHHHST
T ss_pred EEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHHHhhc-cCcEEEEecCCCCCCHHHHHHHHHHhCC
Confidence 99999999965432 2345789999999999977652 2334444443 45689999998432 1111
Q ss_pred ---------------------------HHHhcCCCeEEeeccc-----cccCCceEEEEEcC------------------
Q psy13286 147 ---------------------------MEKHLKDPYEINLMEE-----LTLKGVTQYYAFVQ------------------ 176 (351)
Q Consensus 147 ---------------------------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~------------------ 176 (351)
+...+ .+..+..... ...+........+.
T Consensus 205 ~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~ 283 (500)
T 1z63_A 205 GLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFN 283 (500)
T ss_dssp TTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHH
Confidence 11111 1222211100 01111111111111
Q ss_pred ---------------------------------------cccHHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHh
Q psy13286 177 ---------------------------------------ERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITE 215 (351)
Q Consensus 177 ---------------------------------------~~~k~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~~~L~~ 215 (351)
...|...+..++... ++.++||||++...+..+++.|..
T Consensus 284 ~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~ 363 (500)
T 1z63_A 284 NIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEK 363 (500)
T ss_dssp TTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred HHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHH
Confidence 123444455555533 567999999999999999999988
Q ss_pred c-CCeEEEeccCCCHHHHHHHHHHhhcC-Ccc-EEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCcee
Q psy13286 216 L-GYCCYYIHARMAQAHRNRVFHDFRSG-LCR-NLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGI 292 (351)
Q Consensus 216 ~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~ 292 (351)
. ++.+..+||+++..+|.++++.|++| ... +|++|+++++|+|+|++++||++++|+++..|.|++||++|.|+.+.
T Consensus 364 ~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~ 443 (500)
T 1z63_A 364 ELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRN 443 (500)
T ss_dssp HHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSC
T ss_pred hhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCe
Confidence 5 99999999999999999999999998 454 78999999999999999999999999999999999999999998765
Q ss_pred E--EEEeccc
Q psy13286 293 A--INLITYE 300 (351)
Q Consensus 293 ~--i~~~~~~ 300 (351)
+ +.++..+
T Consensus 444 v~v~~lv~~~ 453 (500)
T 1z63_A 444 VIVHKLISVG 453 (500)
T ss_dssp EEEEEEEETT
T ss_pred eEEEEEEeCC
Confidence 5 4445444
No 58
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.97 E-value=3.3e-30 Score=204.59 Aligned_cols=159 Identities=41% Similarity=0.766 Sum_probs=145.6
Q ss_pred CceEEEEEcCccc-HHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCcc
Q psy13286 167 GVTQYYAFVQERQ-KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCR 245 (351)
Q Consensus 167 ~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 245 (351)
++.+++..+.... |...+..++...+++++||||+++..++.+++.|+..++.+..+||+++..+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 5678888887776 999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhccccCCCCccccc
Q psy13286 246 NLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIKSIPKVIDP 325 (351)
Q Consensus 246 ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 325 (351)
|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.+++++...+...+..+++.++..++++|..+.+
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 162 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCTT
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877654
No 59
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=6.6e-30 Score=204.84 Aligned_cols=160 Identities=33% Similarity=0.644 Sum_probs=146.6
Q ss_pred ccCCceEEEEEcCccc-HHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcC
Q psy13286 164 TLKGVTQYYAFVQERQ-KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG 242 (351)
Q Consensus 164 ~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 242 (351)
...++.+++..+.... |...+..+++..+++++||||+++..++.++..|...++.+..+||+++..+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567889999888765 999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCcCCCCCCCCCCCEEEEecCC------CChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhcccc
Q psy13286 243 LCRNLVCSDLFTRGIDVQAVNVVINFDFP------KMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEI 316 (351)
Q Consensus 243 ~~~ilv~T~~~~~G~di~~~~~Vi~~~~p------~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~ 316 (351)
+.++||||+++++|+|+|++++||+|++| .+...|+||+||+||.|+.|.+++++...+...+..+++.++..+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999 899999999999999999999999999999999999999999988
Q ss_pred CCCCccc
Q psy13286 317 KSIPKVI 323 (351)
Q Consensus 317 ~~~~~~~ 323 (351)
.++|..-
T Consensus 164 ~~~~~~~ 170 (175)
T 2rb4_A 164 KQLNAED 170 (175)
T ss_dssp EEECSSC
T ss_pred cccCCch
Confidence 8776543
No 60
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.97 E-value=6e-30 Score=206.40 Aligned_cols=166 Identities=30% Similarity=0.513 Sum_probs=142.0
Q ss_pred cccCCceEEEEEcCcccHHHHHHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc
Q psy13286 163 LTLKGVTQYYAFVQERQKVHCLNTLFSKL-QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 241 (351)
Q Consensus 163 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 241 (351)
....++.+.+..+....|...|..++... +++++||||+++..++.+++.|+..++.+..+||+++..+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 35667899999999999999999999887 47899999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhccccCCCCc
Q psy13286 242 GLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIKSIPK 321 (351)
Q Consensus 242 g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~~~~~ 321 (351)
|+.+|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++|+...|...++.+++.++...+++|.
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 174 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 174 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccc
Q psy13286 322 VIDPALY 328 (351)
Q Consensus 322 ~~~~~~~ 328 (351)
.+.+...
T Consensus 175 ~l~~~a~ 181 (185)
T 2jgn_A 175 WLENMAY 181 (185)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8776543
No 61
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=8.3e-30 Score=206.40 Aligned_cols=178 Identities=26% Similarity=0.386 Sum_probs=146.5
Q ss_pred HHHhcCCCeEEeecc-ccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEecc
Q psy13286 147 MEKHLKDPYEINLME-ELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHA 225 (351)
Q Consensus 147 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~ 225 (351)
.+.++.+|..+.+.. .....++.+.+..+....|...+..++.... +++||||+++..++.+++.|+..++.+..+||
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg 86 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 86 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 455677787777643 3456788999999999999999999998764 68999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccc-hHHH
Q psy13286 226 RMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYE-DRYA 304 (351)
Q Consensus 226 ~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~-~~~~ 304 (351)
++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+.|.+++|++.. +...
T Consensus 87 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~ 166 (191)
T 2p6n_A 87 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESV 166 (191)
T ss_dssp TSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876 7788
Q ss_pred HHHHHHHhccccCCCCccccc
Q psy13286 305 LHRIEKELGTEIKSIPKVIDP 325 (351)
Q Consensus 305 ~~~l~~~l~~~~~~~~~~~~~ 325 (351)
+..+++.++....++|..+.+
T Consensus 167 ~~~l~~~l~~~~~~~p~~l~~ 187 (191)
T 2p6n_A 167 LMDLKALLLEAKQKVPPVLQV 187 (191)
T ss_dssp HHHHHHHHHHTTCCCCHHHHS
T ss_pred HHHHHHHHHHccCcCCHHHHh
Confidence 899999999888888877654
No 62
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.96 E-value=7.3e-29 Score=204.63 Aligned_cols=159 Identities=26% Similarity=0.464 Sum_probs=147.5
Q ss_pred ceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEE
Q psy13286 168 VTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNL 247 (351)
Q Consensus 168 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~il 247 (351)
..+....+....|...+..++....++++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+||
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 45667777888999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhccccCCCCcccccc
Q psy13286 248 VCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIKSIPKVIDPA 326 (351)
Q Consensus 248 v~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 326 (351)
|||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.++++++..+...+..+++.++..+..++....+.
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~e 164 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEE 164 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHH
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998877655443
No 63
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-28 Score=240.97 Aligned_cols=308 Identities=17% Similarity=0.213 Sum_probs=209.8
Q ss_pred cccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHH------
Q psy13286 2 VQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRI------ 71 (351)
Q Consensus 2 ~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------ 71 (351)
|..++|.| .+.++..+......++.+||||| .+|+.||.+.+++++. ++++..++|...........
T Consensus 260 LademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~ 336 (800)
T 3mwy_W 260 LADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNP 336 (800)
T ss_dssp ECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC
T ss_pred EEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccc
Confidence 45566665 34444444333344468999999 6889999999988864 57788888887665544332
Q ss_pred ------hCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcch---
Q psy13286 72 ------YQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLT--- 142 (351)
Q Consensus 72 ------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~--- 142 (351)
....+|+|+|++.+...... +....+++||+||||++.+... .....+..+ .....+++||||-..
T Consensus 337 ~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~s--~~~~~l~~l-~~~~rl~LTgTPiqN~l~ 411 (800)
T 3mwy_W 337 RAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAES--SLYESLNSF-KVANRMLITGTPLQNNIK 411 (800)
T ss_dssp -----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSSS--HHHHHHTTS-EEEEEEEECSCCCSSCSH
T ss_pred cccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCchh--HHHHHHHHh-hhccEEEeeCCcCCCCHH
Confidence 23578999999999664321 2234789999999999976542 234444444 344578899998311
Q ss_pred -HHHHHHHhc-----------------------------CCCeEEeecccc---ccCCceEEEEEc--------------
Q psy13286 143 -VKNFMEKHL-----------------------------KDPYEINLMEEL---TLKGVTQYYAFV-------------- 175 (351)
Q Consensus 143 -~~~~~~~~~-----------------------------~~~~~~~~~~~~---~~~~~~~~~~~~-------------- 175 (351)
+..++.... ..+..+...... ..+........+
T Consensus 412 el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~ 491 (800)
T 3mwy_W 412 ELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNIL 491 (800)
T ss_dssp HHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHH
Confidence 111111100 011111110000 011111111100
Q ss_pred -------------------------------------------------------------CcccHHHHHHHHHhhC--C
Q psy13286 176 -------------------------------------------------------------QERQKVHCLNTLFSKL--Q 192 (351)
Q Consensus 176 -------------------------------------------------------------~~~~k~~~l~~~l~~~--~ 192 (351)
....|+..+..++... .
T Consensus 492 ~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~ 571 (800)
T 3mwy_W 492 TKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKD 571 (800)
T ss_dssp HHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhC
Confidence 0123555666666643 4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCc---cEEEEeCcCCCCCCCCCCCEEEEec
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLC---RNLVCSDLFTRGIDVQAVNVVINFD 269 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~ilv~T~~~~~G~di~~~~~Vi~~~ 269 (351)
+.++||||.....+..+...|...++.+..+||+++..+|.++++.|+++.. .+|++|.+++.|+|++.+++||+||
T Consensus 572 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D 651 (800)
T 3mwy_W 572 GHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFD 651 (800)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESS
T ss_pred CCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEec
Confidence 6799999999999999999999999999999999999999999999998654 4899999999999999999999999
Q ss_pred CCCChhhHhhhccccccCCCceeE--EEEeccc--hHHHHHHHHHHhccccC
Q psy13286 270 FPKMAETYLHRIGRSGRYGHLGIA--INLITYE--DRYALHRIEKELGTEIK 317 (351)
Q Consensus 270 ~p~s~~~~~q~~GR~gR~~~~~~~--i~~~~~~--~~~~~~~l~~~l~~~~~ 317 (351)
+|+++..+.|++||++|.|+...+ +.++..+ |...+....+.+.....
T Consensus 652 ~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~ 703 (800)
T 3mwy_W 652 SDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYA 703 (800)
T ss_dssp CCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC-
T ss_pred CCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986544 4455554 66667777776655443
No 64
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=2.3e-27 Score=226.68 Aligned_cols=305 Identities=13% Similarity=0.150 Sum_probs=199.3
Q ss_pred cccccCCc----chhhhcccCcCC----CCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchH--HHHHHH
Q psy13286 2 VQARQEPT----QFLYLNKLTPAK----ITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLR--DDIMRI 71 (351)
Q Consensus 2 ~~a~tgs~----~l~~l~~l~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~ 71 (351)
|..+||.| .+.++..+.... ...+++|||+|+ +|+.||.+.++++... .+.+..+.++.... ..+...
T Consensus 84 Lad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~ 161 (644)
T 1z3i_X 84 MADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNF 161 (644)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHH
T ss_pred eeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHH
Confidence 45567775 333443332221 123579999997 8999999999999765 45666666665422 222222
Q ss_pred hC------CCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchH--
Q psy13286 72 YQ------KVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTV-- 143 (351)
Q Consensus 72 ~~------~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~-- 143 (351)
.. ..+|+|+|++.+..... .+....+++||+||+|++.+.... ....+..+ .....+++|||+-..-
T Consensus 162 ~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~~~--~~~al~~l-~~~~rl~LTgTPiqN~l~ 236 (644)
T 1z3i_X 162 ISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSDNQ--TYLALNSM-NAQRRVLISGTPIQNDLL 236 (644)
T ss_dssp HCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTCHH--HHHHHHHH-CCSEEEEECSSCSGGGGG
T ss_pred HHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChhhH--HHHHHHhc-ccCcEEEEecCcccCCHH
Confidence 21 37899999999975432 333467899999999999876522 22233333 3446899999973210
Q ss_pred -----------------HHHHHHhc-----------------------------CCCeEEeecccc---ccCCceEEEEE
Q psy13286 144 -----------------KNFMEKHL-----------------------------KDPYEINLMEEL---TLKGVTQYYAF 174 (351)
Q Consensus 144 -----------------~~~~~~~~-----------------------------~~~~~~~~~~~~---~~~~~~~~~~~ 174 (351)
..+...+. ..+..+...... ..+........
T Consensus 237 El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~ 316 (644)
T 1z3i_X 237 EYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVC 316 (644)
T ss_dssp GCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEE
T ss_pred HHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEE
Confidence 00100000 000000000000 00000000000
Q ss_pred c------------------------------------------------------------------------------C
Q psy13286 175 V------------------------------------------------------------------------------Q 176 (351)
Q Consensus 175 ~------------------------------------------------------------------------------~ 176 (351)
+ .
T Consensus 317 ~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (644)
T 1z3i_X 317 CNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQ 396 (644)
T ss_dssp ECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGG
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcc
Confidence 0 0
Q ss_pred cccHHHHHHHHHhh---CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCcc---EEEEe
Q psy13286 177 ERQKVHCLNTLFSK---LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCR---NLVCS 250 (351)
Q Consensus 177 ~~~k~~~l~~~l~~---~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---ilv~T 250 (351)
...|...+..++.. ..+.++||||++...+..+...|...++.+..+||+++..+|.++++.|++|... +|++|
T Consensus 397 ~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 476 (644)
T 1z3i_X 397 LSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 476 (644)
T ss_dssp GSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred cChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEec
Confidence 12344445444443 3568999999999999999999999999999999999999999999999998754 89999
Q ss_pred CcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCcee--EEEEeccc--hHHHHHHHHHHhc
Q psy13286 251 DLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGI--AINLITYE--DRYALHRIEKELG 313 (351)
Q Consensus 251 ~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~--~i~~~~~~--~~~~~~~l~~~l~ 313 (351)
++++.|+|++++++||++|+|+++..+.|++||++|.|+... ++.++..+ |...+....+...
T Consensus 477 ~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~ 543 (644)
T 1z3i_X 477 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKA 543 (644)
T ss_dssp GGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred ccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998754 44455554 4445555554443
No 65
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=4.9e-28 Score=208.71 Aligned_cols=159 Identities=27% Similarity=0.466 Sum_probs=145.9
Q ss_pred ceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEE
Q psy13286 168 VTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNL 247 (351)
Q Consensus 168 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~il 247 (351)
+.+++..+....|...+..++....++++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+||
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 56888889999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhccccCCCCcccccc
Q psy13286 248 VCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIKSIPKVIDPA 326 (351)
Q Consensus 248 v~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 326 (351)
|||+++++|+|+|++++||+++.|++...|+||+||+||.|+.|.+++|++..+...++.+++.++..+..++....+.
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~e 161 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEE 161 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHHH
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998877654443
No 66
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=6.5e-28 Score=237.95 Aligned_cols=287 Identities=9% Similarity=0.080 Sum_probs=185.1
Q ss_pred CcccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHh-CCC
Q psy13286 1 MVQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIY-QKV 75 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~ 75 (351)
+++++|||| .++++..+.. .....++|||+|+++|+.|+.+.++++... .+.++.+.......+. .+.
T Consensus 304 li~~~TGSGKT~t~~~l~~ll~~-~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~ 376 (1038)
T 2w00_A 304 YIWHTTGSGKTLTSFKAARLATE-LDFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDN 376 (1038)
T ss_dssp EEEECTTSSHHHHHHHHHHHHTT-CTTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSC
T ss_pred EEEecCCCCHHHHHHHHHHHHHh-cCCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCC
Confidence 467899997 3444433322 223369999999999999999998887542 1223333333333443 468
Q ss_pred cEEEEccHHHHHHHhccC--cCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHH----HHHHH
Q psy13286 76 HLIIATPGRILDLMDKQV--ANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVK----NFMEK 149 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~--~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~----~~~~~ 149 (351)
+|+|+||++|...+.... ..+..+.+||+||||++... .....+...++ +.+.+++||||..... .....
T Consensus 377 ~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~---~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~ 452 (1038)
T 2w00_A 377 KIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG---EAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTAS 452 (1038)
T ss_dssp CEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH---HHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHH
T ss_pred CEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch---HHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHH
Confidence 999999999998776432 13457789999999986532 33456666664 4789999999874311 01111
Q ss_pred hcCCCeEEeeccc----cccCCceEEEEE-------------------------cCcccHHHH-HHHHHh----h-----
Q psy13286 150 HLKDPYEINLMEE----LTLKGVTQYYAF-------------------------VQERQKVHC-LNTLFS----K----- 190 (351)
Q Consensus 150 ~~~~~~~~~~~~~----~~~~~~~~~~~~-------------------------~~~~~k~~~-l~~~l~----~----- 190 (351)
+++++........ ....+....+.. .....+... +..++. .
T Consensus 453 ~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~ 532 (1038)
T 2w00_A 453 VFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTF 532 (1038)
T ss_dssp HHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhc
Confidence 1122111000000 000000000000 000111122 222222 1
Q ss_pred --CCCCcEEEEeCchHHHHHHHHHHHhcC------------CeE-EEeccC----------C----------CH------
Q psy13286 191 --LQINQSIIFCNSTQRVELLAKKITELG------------YCC-YYIHAR----------M----------AQ------ 229 (351)
Q Consensus 191 --~~~~~~lIf~~~~~~~~~l~~~L~~~~------------~~~-~~~~~~----------~----------~~------ 229 (351)
..+.++||||+++.+|..+++.|.+.+ ..+ ..+|++ + ++
T Consensus 533 ~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l 612 (1038)
T 2w00_A 533 PGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFL 612 (1038)
T ss_dssp SSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHH
T ss_pred ccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHH
Confidence 134689999999999999999998764 344 445542 1 22
Q ss_pred -----------------------HHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhcccccc
Q psy13286 230 -----------------------AHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGR 286 (351)
Q Consensus 230 -----------------------~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR 286 (351)
..|..+++.|++|++++||+|+++.+|+|+|.+ +++++|.|.+...|+|++||++|
T Consensus 613 ~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR 691 (1038)
T 2w00_A 613 DAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNR 691 (1038)
T ss_dssp HHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCc
Confidence 147889999999999999999999999999999 78899999999999999999999
Q ss_pred CCCc----eeEEEEecc
Q psy13286 287 YGHL----GIAINLITY 299 (351)
Q Consensus 287 ~~~~----~~~i~~~~~ 299 (351)
.+.. |.++.|+..
T Consensus 692 ~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 692 IYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp CCCTTCCSEEEEESSCC
T ss_pred CCCCCCCcEEEEEcccc
Confidence 8753 777777764
No 67
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.91 E-value=2e-29 Score=201.02 Aligned_cols=154 Identities=33% Similarity=0.551 Sum_probs=143.9
Q ss_pred CceEEEEEcCc-ccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCcc
Q psy13286 167 GVTQYYAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCR 245 (351)
Q Consensus 167 ~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 245 (351)
++.+.+..+.. ..|...+..+++..+++++||||+++..++.+++.|+..++.+..+||+++..+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 45677777777 78999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhccccCCCC
Q psy13286 246 NLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIKSIP 320 (351)
Q Consensus 246 ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~~~~ 320 (351)
+||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++++...+...+..+++.++..+...+
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 157 (170)
Confidence 999999999999999999999999999999999999999999999999999999999999999999888876644
No 68
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.93 E-value=7.5e-26 Score=191.08 Aligned_cols=160 Identities=29% Similarity=0.462 Sum_probs=144.1
Q ss_pred CcccccCCc-----chhhhcccCcC----CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPA----KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRI 71 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 71 (351)
+++|||||| ++|++..+... ...++++||++||++|+.|+.+.++++....++++..++|+.........+
T Consensus 70 l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 149 (242)
T 3fe2_A 70 VGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 149 (242)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred EEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHh
Confidence 478999997 67777766432 234589999999999999999999999999999999999999888887777
Q ss_pred hCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc
Q psy13286 72 YQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL 151 (351)
Q Consensus 72 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 151 (351)
..+++|+|+||+++.+++.++...+.+++++|+||||++.+.+|...+..+...++...|++++|||+++.+..++..++
T Consensus 150 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l 229 (242)
T 3fe2_A 150 ERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 229 (242)
T ss_dssp HHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHC
T ss_pred cCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHC
Confidence 78899999999999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeec
Q psy13286 152 KDPYEINLM 160 (351)
Q Consensus 152 ~~~~~~~~~ 160 (351)
.++..+.+.
T Consensus 230 ~~~~~i~~~ 238 (242)
T 3fe2_A 230 KDYIHINIG 238 (242)
T ss_dssp SSCEEEEEC
T ss_pred CCCEEEEec
Confidence 999888764
No 69
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.93 E-value=3.9e-25 Score=211.06 Aligned_cols=235 Identities=19% Similarity=0.234 Sum_probs=164.0
Q ss_pred EccHHHHHHHhccCcCCCCccEEEEcccccccCc--chHH----HHHHHHH------------------hCCCCCcEEEE
Q psy13286 80 ATPGRILDLMDKQVANMDHCKILVLDEADKLLSQ--DFKG----MLDHVIS------------------ILPHERQILLY 135 (351)
Q Consensus 80 ~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~--~~~~----~~~~~~~------------------~~~~~~~~i~~ 135 (351)
+||++|++++.. -.++|+||+|++... .+.. ....... ..+...|++++
T Consensus 320 ~tpg~LlDyl~~-------~~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~ 392 (661)
T 2d7d_A 320 STPYTLLDYFPD-------DFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYV 392 (661)
T ss_dssp CCCBCGGGGSCS-------SCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEE
T ss_pred CCccHHHHHccc-------CcEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEE
Confidence 788888887532 248999999987632 1111 1111111 01135789999
Q ss_pred EeeCcchHHHHHHHhcCCCeEEeeccccccCCceEEEEEcCcccHHHHH-HHHHhhC-CCCcEEEEeCchHHHHHHHHHH
Q psy13286 136 SATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCL-NTLFSKL-QINQSIIFCNSTQRVELLAKKI 213 (351)
Q Consensus 136 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l-~~~l~~~-~~~~~lIf~~~~~~~~~l~~~L 213 (351)
|||++...... ............... ... +.......+...+ ..+.... .+.++||||+++..++.+++.|
T Consensus 393 SAT~~~~~~~~----~~~~~~~~~r~~~l~--~p~-i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L 465 (661)
T 2d7d_A 393 SATPGPYEIEH----TDEMVEQIIRPTGLL--DPL-IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYL 465 (661)
T ss_dssp CSSCCHHHHHH----CSSCEEECCCTTCCC--CCE-EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred ecCCChhHHHh----hhCeeeeeecccCCC--CCe-EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHH
Confidence 99987543221 111111111110000 111 1112222333334 3333332 4679999999999999999999
Q ss_pred HhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecC-----CCChhhHhhhccccccCC
Q psy13286 214 TELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDF-----PKMAETYLHRIGRSGRYG 288 (351)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~-----p~s~~~~~q~~GR~gR~~ 288 (351)
+..++.+..+||+++..+|.++++.|++|+.+|||||+.+++|+|+|++++||+++. |.+..+|+||+||+||.
T Consensus 466 ~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~- 544 (661)
T 2d7d_A 466 KEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN- 544 (661)
T ss_dssp HHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-
T ss_pred HhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-
Confidence 999999999999999999999999999999999999999999999999999999997 99999999999999998
Q ss_pred CceeEEEEeccchH---------HHHHHHHHHhccccCCCCccccccccc
Q psy13286 289 HLGIAINLITYEDR---------YALHRIEKELGTEIKSIPKVIDPALYV 329 (351)
Q Consensus 289 ~~~~~i~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~~~~~~~~ 329 (351)
..|.++++++..+. ...+.+++.++......|..+.+.+..
T Consensus 545 ~~G~~i~~~~~~~~~~~~~i~~~~~~r~i~~~~~~~~~~~p~~~~~~i~~ 594 (661)
T 2d7d_A 545 AEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRD 594 (661)
T ss_dssp TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC----
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhhHHHH
Confidence 78999999988543 334456667788888888777665543
No 70
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.93 E-value=1.1e-24 Score=207.96 Aligned_cols=136 Identities=18% Similarity=0.284 Sum_probs=117.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecC-
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDF- 270 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~- 270 (351)
.+.++||||+++..++.+++.|...++.+..+||+++..+|.++++.|++|+.+|||||+.+++|+|+|++++||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 5679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhhHhhhccccccCCCceeEEEEeccchHH---------HHHHHHHHhccccCCCCcccccccc
Q psy13286 271 ----PKMAETYLHRIGRSGRYGHLGIAINLITYEDRY---------ALHRIEKELGTEIKSIPKVIDPALY 328 (351)
Q Consensus 271 ----p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~---------~~~~l~~~l~~~~~~~~~~~~~~~~ 328 (351)
|.|..+|+||+||+||.+ .|.++++++..+.. ..+.++..++......|..+.+.+.
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~p~~~~~~i~ 587 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVR 587 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC-----
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 899999999999999984 79999999875443 3444556677777777776665543
No 71
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=1.4e-24 Score=178.81 Aligned_cols=156 Identities=58% Similarity=0.934 Sum_probs=138.0
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC-CceEEEEECCcchHHHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL-NVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
+++||||+| ++|++..+..... +++++|++|+++|+.|+.+.++++.... +.++..+.|+............+
T Consensus 44 lv~apTGsGKT~~~~~~~~~~~~~~~~-~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 122 (206)
T 1vec_A 44 LARAKNGTGKSGAYLIPLLERLDLKKD-NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 122 (206)
T ss_dssp EEECCSSSTTHHHHHHHHHHHCCTTSC-SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSC
T ss_pred EEECCCCCchHHHHHHHHHHHhcccCC-CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCC
Confidence 478999997 5677776654433 4799999999999999999999998877 78999999999887777777778
Q ss_pred CcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 75 VHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
++|+|+||+++.+.+.++...+.+++++|+||+|++.+.+|...+..+...++...|++++|||+++....++..++.+|
T Consensus 123 ~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p 202 (206)
T 1vec_A 123 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKP 202 (206)
T ss_dssp CSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSC
T ss_pred CCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCC
Confidence 99999999999999988877889999999999999999999999999999998899999999999999999999999888
Q ss_pred eEE
Q psy13286 155 YEI 157 (351)
Q Consensus 155 ~~~ 157 (351)
..+
T Consensus 203 ~~i 205 (206)
T 1vec_A 203 YEI 205 (206)
T ss_dssp EEE
T ss_pred eEe
Confidence 765
No 72
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.92 E-value=1e-24 Score=182.46 Aligned_cols=157 Identities=32% Similarity=0.463 Sum_probs=131.7
Q ss_pred CcccccCCc-----chhhhcccCcC-----CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPA-----KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMR 70 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 70 (351)
+++|||||| ++|++..+... ...++++||++|+++|+.|+.+.++++. ..++++..++|+.........
T Consensus 61 l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 139 (228)
T 3iuy_A 61 IVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIED 139 (228)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHH
T ss_pred EEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHH
Confidence 478999997 66777665432 2345899999999999999999999986 457889999999887777777
Q ss_pred HhCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHh
Q psy13286 71 IYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKH 150 (351)
Q Consensus 71 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~ 150 (351)
+..+++|+|+||+++.+++.+....+.+++++|+||||++.+.+|...+..+...++...|++++|||+++....++..+
T Consensus 140 ~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 219 (228)
T 3iuy_A 140 ISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSY 219 (228)
T ss_dssp HHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTT
T ss_pred hcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHH
Confidence 77889999999999999988888888999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEe
Q psy13286 151 LKDPYEIN 158 (351)
Q Consensus 151 ~~~~~~~~ 158 (351)
+.+|..+.
T Consensus 220 l~~p~~i~ 227 (228)
T 3iuy_A 220 LKDPMIVY 227 (228)
T ss_dssp CSSCEEEE
T ss_pred CCCCEEEe
Confidence 99987764
No 73
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.92 E-value=2.4e-24 Score=182.30 Aligned_cols=158 Identities=32% Similarity=0.524 Sum_probs=139.0
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+++|||||| ++|++..+..... ++++||++|+++|+.|+.+.++++....++++..+.|+.........+..++
T Consensus 84 lv~a~TGsGKT~~~~~~il~~l~~~~~-~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (249)
T 3ber_A 84 IGLAETGSGKTGAFALPILNALLETPQ-RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKP 162 (249)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHSCC-SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCC
T ss_pred EEEcCCCCCchhHhHHHHHHHHhcCCC-CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCC
Confidence 478999997 6677766655433 4789999999999999999999999988999999999988777777777889
Q ss_pred cEEEEccHHHHHHHhc-cCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 76 HLIIATPGRILDLMDK-QVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~-~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
+|+|+||+++.+.+.+ ....+.+++++|+||||++.+.+|...+..++..++...|++++|||++..+..++..++.+|
T Consensus 163 ~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p 242 (249)
T 3ber_A 163 HIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNP 242 (249)
T ss_dssp SEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred CEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCC
Confidence 9999999999998876 445688999999999999999999999999999998899999999999999999999999999
Q ss_pred eEEee
Q psy13286 155 YEINL 159 (351)
Q Consensus 155 ~~~~~ 159 (351)
..+.+
T Consensus 243 ~~i~v 247 (249)
T 3ber_A 243 VKCAV 247 (249)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 87754
No 74
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.92 E-value=8.6e-25 Score=181.77 Aligned_cols=159 Identities=28% Similarity=0.506 Sum_probs=137.4
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC----CceEEEEECCcchHHHHHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL----NVKVMVTTGGTNLRDDIMRI 71 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~ 71 (351)
+++|||||| ++|++..+..... ++++||++|+++|+.|+.+.++++.... ++++..+.|+.........+
T Consensus 45 lv~a~TGsGKT~~~~~~~l~~l~~~~~-~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 123 (219)
T 1q0u_A 45 VGQSQTGTGKTHAYLLPIMEKIKPERA-EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL 123 (219)
T ss_dssp EEECCSSHHHHHHHHHHHHHHCCTTSC-SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCC
T ss_pred EEECCCCChHHHHHHHHHHHHHHhCcC-CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHc
Confidence 478999996 6777777665433 4799999999999999999999998876 68888899988765554444
Q ss_pred hCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc
Q psy13286 72 YQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL 151 (351)
Q Consensus 72 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 151 (351)
..+++|+|+||+++.+.+.++...+.+++++|+||||++.+.+|...+..+...++...|++++|||++..+.++++.++
T Consensus 124 ~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 203 (219)
T 1q0u_A 124 NVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYM 203 (219)
T ss_dssp SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHC
T ss_pred CCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHc
Confidence 45789999999999999988777788999999999999999999999999999998899999999999999999999999
Q ss_pred CCCeEEeec
Q psy13286 152 KDPYEINLM 160 (351)
Q Consensus 152 ~~~~~~~~~ 160 (351)
.+|..+...
T Consensus 204 ~~p~~~~~~ 212 (219)
T 1q0u_A 204 ENPTFVHVL 212 (219)
T ss_dssp SSCEEEECC
T ss_pred CCCeEEEee
Confidence 999887654
No 75
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.92 E-value=2.6e-24 Score=182.92 Aligned_cols=161 Identities=29% Similarity=0.507 Sum_probs=138.7
Q ss_pred CcccccCCc-----chhhhcccCcCC--------CCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAK--------ITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD 67 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~--------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 67 (351)
+++|||||| ++|++..+.... ..++++||++|+++|+.|+.+.++++....++++..+.|+......
T Consensus 64 l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 143 (253)
T 1wrb_A 64 MACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQ 143 (253)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHH
T ss_pred EEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHH
Confidence 478999997 667776664322 2347999999999999999999999998888999999999988887
Q ss_pred HHHHhCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHh--CCC--CCcEEEEEeeCcchH
Q psy13286 68 IMRIYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISI--LPH--ERQILLYSATFPLTV 143 (351)
Q Consensus 68 ~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~--~~~--~~~~i~~SaT~~~~~ 143 (351)
...+..+++|+|+||+++.+.+.+....+.+++++|+||||++.+.+|...+..++.. .+. ..|++++|||+++.+
T Consensus 144 ~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~ 223 (253)
T 1wrb_A 144 IREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEI 223 (253)
T ss_dssp HHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHH
T ss_pred HHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHH
Confidence 7777788999999999999999888888899999999999999999999999998885 333 678999999999999
Q ss_pred HHHHHHhcCCCeEEeecc
Q psy13286 144 KNFMEKHLKDPYEINLME 161 (351)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~ 161 (351)
..+...++.++..+.+..
T Consensus 224 ~~~~~~~l~~~~~i~~~~ 241 (253)
T 1wrb_A 224 QKLAADFLYNYIFMTVGR 241 (253)
T ss_dssp HHHHHHHCSSCEEEEEC-
T ss_pred HHHHHHHcCCCEEEEECC
Confidence 999999999988877653
No 76
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.92 E-value=1.4e-24 Score=182.62 Aligned_cols=158 Identities=30% Similarity=0.530 Sum_probs=128.7
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCC-
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQK- 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~- 74 (351)
+++|||||| ++|++..+..... ++++||++|+++|+.|+.+.+++++...+.++..+.|+.........+..+
T Consensus 71 li~apTGsGKT~~~~l~~l~~l~~~~~-~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 149 (237)
T 3bor_A 71 IAQAQSGTGKTATFAISILQQLEIEFK-ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 149 (237)
T ss_dssp EECCCSSHHHHHHHHHHHHHHCCTTSC-SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcCC-CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCC
Confidence 478999996 6677776654433 479999999999999999999999988889999999988776666565554
Q ss_pred CcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCC
Q psy13286 75 VHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDP 154 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 154 (351)
++|+|+||+++.+.+.++...+.+++++|+||||++.+.+|...+..+...++...|++++|||+++.+..++..++.+|
T Consensus 150 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p 229 (237)
T 3bor_A 150 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDP 229 (237)
T ss_dssp CSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred CCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCC
Confidence 89999999999999988877889999999999999999899999999999999999999999999999999999999998
Q ss_pred eEEee
Q psy13286 155 YEINL 159 (351)
Q Consensus 155 ~~~~~ 159 (351)
..+.+
T Consensus 230 ~~i~v 234 (237)
T 3bor_A 230 IRILV 234 (237)
T ss_dssp EEEC-
T ss_pred EEEEe
Confidence 87755
No 77
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.91 E-value=4.5e-24 Score=178.72 Aligned_cols=157 Identities=33% Similarity=0.560 Sum_probs=135.0
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC-CceEEEEECCcchHHHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL-NVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
+++||||+| ++|++..+..... ++++||++|+++|+.|+.+.++++.... ++++..+.|+.....+...+ .+
T Consensus 65 l~~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~ 142 (230)
T 2oxc_A 65 IVQAKSGTGKTCVFSTIALDSLVLENL-STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KK 142 (230)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTSC-SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TS
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcCC-CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cC
Confidence 478999997 5677777655433 4799999999999999999999998765 78999999988766554443 57
Q ss_pred CcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcc-hHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCC
Q psy13286 75 VHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQD-FKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKD 153 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~ 153 (351)
++|+|+||+++.+++..+...+.+++++|+||+|++.+.+ |...+..+...++...|++++|||+++.+..++..++.+
T Consensus 143 ~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~ 222 (230)
T 2oxc_A 143 CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRD 222 (230)
T ss_dssp CSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSS
T ss_pred CCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCC
Confidence 9999999999999998877778899999999999999886 999999999999989999999999999999999999988
Q ss_pred CeEEee
Q psy13286 154 PYEINL 159 (351)
Q Consensus 154 ~~~~~~ 159 (351)
|..+.+
T Consensus 223 p~~i~~ 228 (230)
T 2oxc_A 223 PTFVRL 228 (230)
T ss_dssp CEEECC
T ss_pred CeEEEc
Confidence 877654
No 78
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.91 E-value=2.3e-24 Score=183.86 Aligned_cols=155 Identities=30% Similarity=0.445 Sum_probs=135.0
Q ss_pred CcccccCCc-----chhhhcccCcC---CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHh
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPA---KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIY 72 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 72 (351)
+++|||||| ++|++..+... ...++++||++||++|+.|+++.+++++...+..+..+.|+.........+.
T Consensus 95 lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 174 (262)
T 3ly5_A 95 LAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLG 174 (262)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHH
T ss_pred EEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhc
Confidence 579999997 67777665432 2235789999999999999999999999988999999999998887777777
Q ss_pred CCCcEEEEccHHHHHHHhccC-cCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc
Q psy13286 73 QKVHLIIATPGRILDLMDKQV-ANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL 151 (351)
Q Consensus 73 ~~~~Ilv~Tp~~l~~~l~~~~-~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 151 (351)
.+++|+|+||+++.+.+.+.. ..+.+++++|+||||++.+.+|...+..+...++..+|++++|||+++.+..+.+.++
T Consensus 175 ~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l 254 (262)
T 3ly5_A 175 NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISL 254 (262)
T ss_dssp HCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHC
T ss_pred CCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHc
Confidence 789999999999998877653 5688999999999999999999999999999999999999999999999999999888
Q ss_pred CCCe
Q psy13286 152 KDPY 155 (351)
Q Consensus 152 ~~~~ 155 (351)
.++.
T Consensus 255 ~~~~ 258 (262)
T 3ly5_A 255 KKEP 258 (262)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7543
No 79
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.91 E-value=4.9e-24 Score=177.90 Aligned_cols=158 Identities=31% Similarity=0.561 Sum_probs=130.4
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+++||||+| ++|++..+..... ++++||++|+++|+.|+.+.++++....++++..+.|+.........+. .+
T Consensus 55 lv~~pTGsGKT~~~~~~~l~~l~~~~~-~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~ 132 (224)
T 1qde_A 55 LAQAQSGTGKTGTFSIAALQRIDTSVK-APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DA 132 (224)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTCC-SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TC
T ss_pred EEECCCCCcHHHHHHHHHHHHHhccCC-CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CC
Confidence 478999997 6677777655444 4799999999999999999999999888999999999887655544443 48
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCe
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPY 155 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 155 (351)
+|+|+||+++.+.+.+....+.+++++|+||||++.+.+|...+..+...++...|++++|||+++.+..++..++.+|.
T Consensus 133 ~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~ 212 (224)
T 1qde_A 133 QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPV 212 (224)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCE
T ss_pred CEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCE
Confidence 99999999999999888878899999999999999999999999999999999999999999999999999999999988
Q ss_pred EEeec
Q psy13286 156 EINLM 160 (351)
Q Consensus 156 ~~~~~ 160 (351)
.+.+.
T Consensus 213 ~i~~~ 217 (224)
T 1qde_A 213 RILVK 217 (224)
T ss_dssp EEC--
T ss_pred EEEec
Confidence 87664
No 80
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=5.4e-23 Score=194.34 Aligned_cols=292 Identities=14% Similarity=0.129 Sum_probs=203.7
Q ss_pred cccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCc
Q psy13286 2 VQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVH 76 (351)
Q Consensus 2 ~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 76 (351)
.+|+||+| ++|++... .. +..++|++||++||.|.++++..+...+++++..+.|+.+.... ....+++
T Consensus 97 aeakTGeGKTLvf~Lp~~L~a---L~-G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r--~~ay~~D 170 (997)
T 2ipc_A 97 AEMKTGEGKTLVATLAVALNA---LT-GKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAER--RKAYLAD 170 (997)
T ss_dssp EECCSTHHHHHHHHHHHHHHH---TT-CSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHH--HHHHTSS
T ss_pred eeccCCCchHHHHHHHHHHHH---Hh-CCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--HHHcCCC
Confidence 57899996 55553222 22 36899999999999999999999999999999999999874433 3334699
Q ss_pred EEEEccHHH-HHHHhccC------cCCC---CccEEEEcccccccC-cc---------------hHHHHHHHHHhCC---
Q psy13286 77 LIIATPGRI-LDLMDKQV------ANMD---HCKILVLDEADKLLS-QD---------------FKGMLDHVISILP--- 127 (351)
Q Consensus 77 Ilv~Tp~~l-~~~l~~~~------~~~~---~~~lvViDE~h~~~~-~~---------------~~~~~~~~~~~~~--- 127 (351)
|+|+||..+ +++++.+. ..+. .+.++|+||+|.++. .+ ....+..+...++
T Consensus 171 IvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLIISgp~~~~~~lY~~~~~~i~~L~~~~ 250 (997)
T 2ipc_A 171 VTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGL 250 (997)
T ss_dssp EEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEEEESCSSCHHHHHHHHHHHHHSCCCC
T ss_pred EEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCeeeeCCCccchHHHHHHHHHHHHhhhcc
Confidence 999999999 88887764 3466 899999999998762 11 0011111111110
Q ss_pred -----------------------------------------------------------------C--------------
Q psy13286 128 -----------------------------------------------------------------H-------------- 128 (351)
Q Consensus 128 -----------------------------------------------------------------~-------------- 128 (351)
.
T Consensus 251 ~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IV 330 (997)
T 2ipc_A 251 PAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIV 330 (997)
T ss_dssp CCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHHHHHHHSSCHHHHEEECSSCEEEE
T ss_pred ccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHHHHHHHHHHHHhcCCCeEEECCEEEEE
Confidence 0
Q ss_pred -----------------------------------------------CCcEEEEEeeCcchHHHHHHHhcCCCeEEeecc
Q psy13286 129 -----------------------------------------------ERQILLYSATFPLTVKNFMEKHLKDPYEINLME 161 (351)
Q Consensus 129 -----------------------------------------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 161 (351)
-..+.+||+|......++.+.|..+.+.+....
T Consensus 331 De~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMTGTA~tE~~Ef~~iY~l~Vv~IPTn~ 410 (997)
T 2ipc_A 331 DEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQEIYGMDVVVVPTNR 410 (997)
T ss_dssp ETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHHCCCEEECCCSS
T ss_pred ECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecCCCchHHHHHHHHHhCCCEEEcCCCC
Confidence 236789999988887777777766533322222
Q ss_pred ccccCCceEEEEEcCcccHHHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHH-------------------------
Q psy13286 162 ELTLKGVTQYYAFVQERQKVHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKIT------------------------- 214 (351)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lIf~~~~~~~~~l~~~L~------------------------- 214 (351)
....... ....+.....|...+..-+.. ..+.|+||+|.|.+..+.+++.|+
T Consensus 411 p~~R~D~-~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (997)
T 2ipc_A 411 PVIRKDF-PDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQG 489 (997)
T ss_dssp CCCCEEE-EEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCS
T ss_pred CcccccC-CCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccc
Confidence 2211111 122344556777776655543 247899999999999999999998
Q ss_pred ---------------------------------------------------hcCCeEEEeccCCCHHHHHHHHHHhhcCC
Q psy13286 215 ---------------------------------------------------ELGYCCYYIHARMAQAHRNRVFHDFRSGL 243 (351)
Q Consensus 215 ---------------------------------------------------~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 243 (351)
+.+++...++......+-.-+.+.-+.|
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~G- 568 (997)
T 2ipc_A 490 PEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSK- 568 (997)
T ss_dssp HHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSHHHHHHHHHTTTSTT-
T ss_pred cchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccchHHHHHHHHhcCCCC-
Confidence 4566666666654433333333333444
Q ss_pred ccEEEEeCcCCCCCCCCCC-------------------C-----------------------------------------
Q psy13286 244 CRNLVCSDLFTRGIDVQAV-------------------N----------------------------------------- 263 (351)
Q Consensus 244 ~~ilv~T~~~~~G~di~~~-------------------~----------------------------------------- 263 (351)
.|.|||+++++|.||.-- .
T Consensus 569 -aVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (997)
T 2ipc_A 569 -TVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREE 647 (997)
T ss_dssp -CEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -eEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhh
Confidence 789999999999998521 1
Q ss_pred --------------EEEEecCCCChhhHhhhccccccCCCceeEEEEeccchH
Q psy13286 264 --------------VVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITYEDR 302 (351)
Q Consensus 264 --------------~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~ 302 (351)
|||--..+.|..-=.|-.||+||.|.+|.+-.|++-+|.
T Consensus 648 ~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDd 700 (997)
T 2ipc_A 648 CKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDD 700 (997)
T ss_dssp HHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSH
T ss_pred hhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChH
Confidence 677777788887788999999999999999988887763
No 81
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.91 E-value=5.3e-24 Score=184.89 Aligned_cols=156 Identities=31% Similarity=0.468 Sum_probs=133.6
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC-CceEEEEECCcchHHHHHHHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL-NVKVMVTTGGTNLRDDIMRIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ 74 (351)
+++|||||| ++|++..+..... ++++|||+||++|+.|+++.++++.... ++.+....|+...... ...+
T Consensus 135 l~~a~TGsGKT~a~~lp~l~~l~~~~~-~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~ 210 (300)
T 3fmo_B 135 IAQSQSGTGKTAAFVLAMLSQVEPANK-YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKIS 210 (300)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTSC-SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCC
T ss_pred EEECCCCCCccHHHHHHHHHhhhccCC-CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCC
Confidence 478999996 6788888766544 3799999999999999999999998765 6888888887764332 1346
Q ss_pred CcEEEEccHHHHHHHhc-cCcCCCCccEEEEcccccccC-cchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcC
Q psy13286 75 VHLIIATPGRILDLMDK-QVANMDHCKILVLDEADKLLS-QDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLK 152 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~-~~~~~~~~~lvViDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 152 (351)
++|+|+||+++.+++.+ +..++.+++++|+||+|++.+ .+|...+..+...++..+|++++|||++..+..++..++.
T Consensus 211 ~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~ 290 (300)
T 3fmo_B 211 EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVP 290 (300)
T ss_dssp CSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSS
T ss_pred CCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCC
Confidence 89999999999999865 556788999999999999987 6889999999999999999999999999999999999999
Q ss_pred CCeEEeec
Q psy13286 153 DPYEINLM 160 (351)
Q Consensus 153 ~~~~~~~~ 160 (351)
+|..+.+.
T Consensus 291 ~p~~i~~~ 298 (300)
T 3fmo_B 291 DPNVIKLK 298 (300)
T ss_dssp SCEEEEEC
T ss_pred CCeEEEec
Confidence 99988764
No 82
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.91 E-value=9.5e-24 Score=177.56 Aligned_cols=159 Identities=33% Similarity=0.498 Sum_probs=134.0
Q ss_pred CcccccCCc-----chhhhcccCcC---CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHh
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPA---KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIY 72 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 72 (351)
+++||||+| ++|++..+... ...++++||++|+++|+.|+.+.++++....++++..++|+.........+
T Consensus 66 li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~- 144 (236)
T 2pl3_A 66 LGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI- 144 (236)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-
T ss_pred EEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-
Confidence 478999997 66666665432 233579999999999999999999999988889999999998766655444
Q ss_pred CCCcEEEEccHHHHHHHhcc-CcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc
Q psy13286 73 QKVHLIIATPGRILDLMDKQ-VANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL 151 (351)
Q Consensus 73 ~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 151 (351)
.+++|+|+||+++.+.+.+. ...+.+++++|+||+|++.+.+|...+..+...++...|++++|||+++.+..+...++
T Consensus 145 ~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 224 (236)
T 2pl3_A 145 NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSL 224 (236)
T ss_dssp TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSC
T ss_pred CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhC
Confidence 57999999999998887664 45678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeec
Q psy13286 152 KDPYEINLM 160 (351)
Q Consensus 152 ~~~~~~~~~ 160 (351)
.+|..+.+.
T Consensus 225 ~~p~~i~~~ 233 (236)
T 2pl3_A 225 KNPEYVWVH 233 (236)
T ss_dssp SSCEEEECC
T ss_pred CCCEEEEeC
Confidence 999887654
No 83
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.91 E-value=1.4e-23 Score=172.86 Aligned_cols=157 Identities=34% Similarity=0.543 Sum_probs=135.7
Q ss_pred CcccccCCc-----chhhhcccCcC--CCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPA--KITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQ 73 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~--~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 73 (351)
++++|||+| ++|++..+... ...+++++|++|+++|+.|+.+.++++... +++..++|+.........+..
T Consensus 42 li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 119 (207)
T 2gxq_A 42 IGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLR 119 (207)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHH
T ss_pred EEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhC
Confidence 478999997 66666666542 234579999999999999999999988764 678888898887777666777
Q ss_pred CCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCC
Q psy13286 74 KVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKD 153 (351)
Q Consensus 74 ~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~ 153 (351)
+++|+|+||+++.+.+.++...+.+++++|+||+|++.+.+|...+..+....+...|++++|||+++.+..+.+.++.+
T Consensus 120 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~ 199 (207)
T 2gxq_A 120 GADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKN 199 (207)
T ss_dssp CCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSS
T ss_pred CCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCC
Confidence 89999999999999998887788999999999999999989999999999999889999999999999999999999999
Q ss_pred CeEEee
Q psy13286 154 PYEINL 159 (351)
Q Consensus 154 ~~~~~~ 159 (351)
|..+.+
T Consensus 200 p~~i~~ 205 (207)
T 2gxq_A 200 PVLINV 205 (207)
T ss_dssp CEEEEC
T ss_pred CeEEEc
Confidence 887654
No 84
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=1.6e-23 Score=174.21 Aligned_cols=157 Identities=33% Similarity=0.543 Sum_probs=133.8
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhC-CceEEEEECCcchHHHHHHHhC-
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHL-NVKVMVTTGGTNLRDDIMRIYQ- 73 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~- 73 (351)
+++||||+| ++|++..+..... ++++||++|+++|+.|+.+.++++.... ++++..+.|+.........+..
T Consensus 55 li~~~TGsGKT~~~~~~~~~~~~~~~~-~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 133 (220)
T 1t6n_A 55 LCQAKSGMGKTAVFVLATLQQLEPVTG-QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 133 (220)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCCCTT-CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHS
T ss_pred EEECCCCCchhhhhhHHHHHhhhccCC-CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcC
Confidence 478999997 6667666654333 3699999999999999999999998776 7899999999876666555543
Q ss_pred CCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccC-cchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcC
Q psy13286 74 KVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLS-QDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLK 152 (351)
Q Consensus 74 ~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 152 (351)
.++|+|+||+++...+.+....+.+++++|+||||++.+ .++...+..+....+...|++++|||++..+..+.+.++.
T Consensus 134 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 213 (220)
T 1t6n_A 134 CPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ 213 (220)
T ss_dssp CCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCS
T ss_pred CCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcC
Confidence 579999999999999988877889999999999999987 5788888889888888999999999999999999999999
Q ss_pred CCeEEe
Q psy13286 153 DPYEIN 158 (351)
Q Consensus 153 ~~~~~~ 158 (351)
+|..+.
T Consensus 214 ~p~~i~ 219 (220)
T 1t6n_A 214 DPMEIF 219 (220)
T ss_dssp SCEEEE
T ss_pred CCeEEe
Confidence 987764
No 85
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.89 E-value=3.1e-23 Score=175.41 Aligned_cols=161 Identities=22% Similarity=0.356 Sum_probs=131.0
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH-HHhCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM-RIYQK 74 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~ 74 (351)
+++|||||| ++|++..+......++++||++|+++|+.|+.+.++++....++++..+.|+........ ....+
T Consensus 70 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (245)
T 3dkp_A 70 LASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKK 149 (245)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCC
T ss_pred EEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCC
Confidence 478999997 678888877665566899999999999999999999999888888887776654322211 12346
Q ss_pred CcEEEEccHHHHHHHhcc--CcCCCCccEEEEcccccccC---cchHHHHHHHHHhC-CCCCcEEEEEeeCcchHHHHHH
Q psy13286 75 VHLIIATPGRILDLMDKQ--VANMDHCKILVLDEADKLLS---QDFKGMLDHVISIL-PHERQILLYSATFPLTVKNFME 148 (351)
Q Consensus 75 ~~Ilv~Tp~~l~~~l~~~--~~~~~~~~lvViDE~h~~~~---~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~~~~~ 148 (351)
++|+|+||+++.+++.+. ...+.+++++|+||||++.+ .+|...+..++... +...|++++|||+++.+..++.
T Consensus 150 ~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~ 229 (245)
T 3dkp_A 150 FDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCK 229 (245)
T ss_dssp CCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHH
T ss_pred CCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHH
Confidence 899999999999998776 45688999999999999987 46777788777665 4578999999999999999999
Q ss_pred HhcCCCeEEeecc
Q psy13286 149 KHLKDPYEINLME 161 (351)
Q Consensus 149 ~~~~~~~~~~~~~ 161 (351)
.++.+|..+.+..
T Consensus 230 ~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 230 LNLDNVISVSIGA 242 (245)
T ss_dssp HHSSSCEEEEECC
T ss_pred HhCCCCEEEEeCC
Confidence 9999998887643
No 86
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.81 E-value=1.3e-19 Score=154.27 Aligned_cols=136 Identities=14% Similarity=0.138 Sum_probs=103.9
Q ss_pred cCcccHHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhc-CCeEEEeccCCCHHHHHHHHHHhhcC-Ccc-EEEE
Q psy13286 175 VQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITEL-GYCCYYIHARMAQAHRNRVFHDFRSG-LCR-NLVC 249 (351)
Q Consensus 175 ~~~~~k~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-ilv~ 249 (351)
.....|...+..++... .+.++||||++...+..+...|... |+.+..+||+++..+|.++++.|++| ..+ +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34567888888888765 6789999999999999999999885 99999999999999999999999998 676 7899
Q ss_pred eCcCCCCCCCCCCCEEEEecCCCChhhHhhhccccccCCCceeE--EEEeccc--hHHHHHHHHH
Q psy13286 250 SDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIA--INLITYE--DRYALHRIEK 310 (351)
Q Consensus 250 T~~~~~G~di~~~~~Vi~~~~p~s~~~~~q~~GR~gR~~~~~~~--i~~~~~~--~~~~~~~l~~ 310 (351)
|+++++|+|++++++||+||+||++..|.|++||++|.|+.+.+ +.++..+ |...+..+.+
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~ 236 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 236 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHH
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987654 4455554 4444444444
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.71 E-value=2.3e-17 Score=154.52 Aligned_cols=109 Identities=12% Similarity=0.164 Sum_probs=67.6
Q ss_pred HHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEE--EeCcCCCCCCCCC-
Q psy13286 185 NTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV--CSDLFTRGIDVQA- 261 (351)
Q Consensus 185 ~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv--~T~~~~~G~di~~- 261 (351)
..++.. .+++++||++|...++.+++.++. .. ...++.. ..|.++++.|+++. .||+ +|+.+.+|+|+|+
T Consensus 377 ~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~ 449 (540)
T 2vl7_A 377 KRIYEN-SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREK 449 (540)
T ss_dssp HHHHHT-CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-------------
T ss_pred HHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCC
Confidence 334433 457899999999999999988865 23 2344443 46788999999865 5666 7899999999997
Q ss_pred ---CCEEEEecCCCC-h-----------------------------hhHhhhccccccCCCceeEEEEeccc
Q psy13286 262 ---VNVVINFDFPKM-A-----------------------------ETYLHRIGRSGRYGHLGIAINLITYE 300 (351)
Q Consensus 262 ---~~~Vi~~~~p~s-~-----------------------------~~~~q~~GR~gR~~~~~~~i~~~~~~ 300 (351)
+++||++++|.. + ..+.|.+||+-|...+--++++++..
T Consensus 450 ~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 450 ENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp --CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred cccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 789999998832 1 12358889999985554455555543
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.70 E-value=5e-18 Score=140.46 Aligned_cols=137 Identities=14% Similarity=0.159 Sum_probs=90.3
Q ss_pred CcccccCCc-----chhhhcccCcC--CCCCceEEEEcCCHHHHHH-HHHHHHHHHhhCCceEEEEECCcchHHHHHHHh
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPA--KITSKATLIIVPTRELALQ-TSQICIELAKHLNVKVMVTTGGTNLRDDIMRIY 72 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~--~~~~~~~lil~P~~~L~~q-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 72 (351)
+|++|||+| +++++..+... ...++++||++|+++|+.| +.+.++++... ++++..+.|+...........
T Consensus 52 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~ 130 (216)
T 3b6e_A 52 IICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVV 130 (216)
T ss_dssp EEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhc
Confidence 478999996 34444333221 1234799999999999999 78888888765 678888888876555444444
Q ss_pred CCCcEEEEccHHHHHHHhccC------cCCCCccEEEEcccccccCcchHHH-HHHHHHhC-------------CCCCcE
Q psy13286 73 QKVHLIIATPGRILDLMDKQV------ANMDHCKILVLDEADKLLSQDFKGM-LDHVISIL-------------PHERQI 132 (351)
Q Consensus 73 ~~~~Ilv~Tp~~l~~~l~~~~------~~~~~~~lvViDE~h~~~~~~~~~~-~~~~~~~~-------------~~~~~~ 132 (351)
..++|+|+||+.+...+.... ..+.++++||+||+|++...++... +..+.... ...+++
T Consensus 131 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (216)
T 3b6e_A 131 KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQI 210 (216)
T ss_dssp HHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEE
T ss_pred cCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceE
Confidence 568999999999998887643 4567899999999999987654433 33332221 156789
Q ss_pred EEEEee
Q psy13286 133 LLYSAT 138 (351)
Q Consensus 133 i~~SaT 138 (351)
+++|||
T Consensus 211 l~lSAT 216 (216)
T 3b6e_A 211 LGLTAS 216 (216)
T ss_dssp EEEECC
T ss_pred EEeecC
Confidence 999998
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.67 E-value=1.7e-14 Score=135.49 Aligned_cols=282 Identities=15% Similarity=0.140 Sum_probs=171.0
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcch-----------
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNL----------- 64 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~----------- 64 (351)
+++||||+| ++|++. .+++++|++||++|+.|+.+.++++....++++..+.|..+.
T Consensus 26 ~~~a~TGtGKT~~~l~p~l~-------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~ 98 (551)
T 3crv_A 26 ALNAPTGSGKTLFSLLVSLE-------VKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKGAESE 98 (551)
T ss_dssp EEECCTTSSHHHHHHHHHHH-------HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGG
T ss_pred EEECCCCccHHHHHHHHHHh-------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhcCCCc
Confidence 478999997 666665 247999999999999999999988877778888887763221
Q ss_pred ----------------------HHHH------------------HHHhCCCcEEEEccHHHHHHHhccCcCC-CCccEEE
Q psy13286 65 ----------------------RDDI------------------MRIYQKVHLIIATPGRILDLMDKQVANM-DHCKILV 103 (351)
Q Consensus 65 ----------------------~~~~------------------~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~-~~~~lvV 103 (351)
...+ ......++|+|+|+..+.+...+....+ .....+|
T Consensus 99 ~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vI 178 (551)
T 3crv_A 99 DIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIV 178 (551)
T ss_dssp GCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEE
T ss_pred ccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEE
Confidence 0111 1223468999999999987654433322 4667899
Q ss_pred EcccccccCcc-------------------------------------------------------hHHHHH--------
Q psy13286 104 LDEADKLLSQD-------------------------------------------------------FKGMLD-------- 120 (351)
Q Consensus 104 iDE~h~~~~~~-------------------------------------------------------~~~~~~-------- 120 (351)
|||||.+.+ . +...+.
T Consensus 179 iDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 257 (551)
T 3crv_A 179 IDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYIKVENVPKLSKEELEILADDYED 257 (551)
T ss_dssp ETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCEECSCCCCCCHHHHHHHHHHHHH
T ss_pred EecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccChHHHHHHHHHHHHHHHH
Confidence 999998754 1 000000
Q ss_pred --------------------HHHH----------------------------hCCCC-CcEEEEEeeCcchHHHHHHHhc
Q psy13286 121 --------------------HVIS----------------------------ILPHE-RQILLYSATFPLTVKNFMEKHL 151 (351)
Q Consensus 121 --------------------~~~~----------------------------~~~~~-~~~i~~SaT~~~~~~~~~~~~~ 151 (351)
.++. .+... ..+|++|||+.+ ...+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~~svIltSaTL~~-~~~~~~~lG 336 (551)
T 3crv_A 258 IRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNELSIILMSGTLPP-REYMEKVWG 336 (551)
T ss_dssp HHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTTCEEEEEESSCCC-HHHHHHTSC
T ss_pred HHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccCceEEEEeeCCCc-HHHHHHHhC
Confidence 0000 01122 578899999986 333344333
Q ss_pred CC-CeEE---e--eccccccCCceEEEEEc--Cc------ccHHH----HHHHHHhhCCCCcEEEEeCchHHHHHHHHHH
Q psy13286 152 KD-PYEI---N--LMEELTLKGVTQYYAFV--QE------RQKVH----CLNTLFSKLQINQSIIFCNSTQRVELLAKKI 213 (351)
Q Consensus 152 ~~-~~~~---~--~~~~~~~~~~~~~~~~~--~~------~~k~~----~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L 213 (351)
.+ +... . +.... ..-...+... +. ..-.. .+..++.. .++.++||++|....+.+++.
T Consensus 337 l~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~- 412 (551)
T 3crv_A 337 IKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ-AKANVLVVFPSYEIMDRVMSR- 412 (551)
T ss_dssp CCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH-CSSEEEEEESCHHHHHHHHTT-
T ss_pred CCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh-CCCCEEEEecCHHHHHHHHHh-
Confidence 22 1210 0 11111 1111122111 10 01122 23333333 357899999999999999873
Q ss_pred HhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEe--CcCCCCCCCC-----CCCEEEEecCCCC-------------
Q psy13286 214 TELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS--DLFTRGIDVQ-----AVNVVINFDFPKM------------- 273 (351)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T--~~~~~G~di~-----~~~~Vi~~~~p~s------------- 273 (351)
.+..+..-..+++. .+.++.|+.+.-.||+|+ ..+.+|+|+| .+++||..++|..
T Consensus 413 --~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~ 487 (551)
T 3crv_A 413 --ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRV 487 (551)
T ss_dssp --CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHT
T ss_pred --cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHH
Confidence 34444333334443 557778854445899998 6999999999 3778999887631
Q ss_pred -------hh----------hHhhhccccccCCCceeEEEEeccc
Q psy13286 274 -------AE----------TYLHRIGRSGRYGHLGIAINLITYE 300 (351)
Q Consensus 274 -------~~----------~~~q~~GR~gR~~~~~~~i~~~~~~ 300 (351)
.- ...|.+||+-|...+--++++++..
T Consensus 488 ~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 488 SLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp TCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred HHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 10 1237789998986665566666654
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.62 E-value=2.7e-16 Score=135.51 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=95.1
Q ss_pred CcccccCCc-----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKV 75 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 75 (351)
+|+++||+| ++++...+. ..++++||++|+++|+.|+.+.++++....+..+..+.++..... ......
T Consensus 132 ll~~~tGsGKT~~~~~~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 205 (282)
T 1rif_A 132 ILNLPTSAGRSLIQALLARYYLE---NYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDA 205 (282)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHH---HCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTC
T ss_pred EEEcCCCCCcHHHHHHHHHHHHH---cCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCC
Confidence 478999997 222222221 223589999999999999999999997666677777777765322 122468
Q ss_pred cEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcchH
Q psy13286 76 HLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTV 143 (351)
Q Consensus 76 ~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 143 (351)
+|+|+||+.+.+. ....+.+++++|+||||++.+. .+..++..+....+++++|||++...
T Consensus 206 ~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~~----~~~~il~~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 206 PVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATGK----SISSIISGLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp SEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCHH----HHHHHTTTCTTCCEEEEECSSCCTTS
T ss_pred cEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCcc----cHHHHHHHhhcCCeEEEEeCCCCCcc
Confidence 9999999987543 2234678899999999998743 56677777767899999999997653
No 91
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=121.22 Aligned_cols=134 Identities=14% Similarity=0.179 Sum_probs=91.1
Q ss_pred CcccccCCc-----chhhhcccCcCC-CCCceEEEEcCCHHHHHHHHHHHHHHHhh-CCceEEEEECCcchHHHHHHHhC
Q psy13286 1 MVQARQEPT-----QFLYLNKLTPAK-ITSKATLIIVPTRELALQTSQICIELAKH-LNVKVMVTTGGTNLRDDIMRIYQ 73 (351)
Q Consensus 1 ~~~a~tgs~-----~l~~l~~l~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~ 73 (351)
+++++|||| .++++..+.... ..+.+++++.|+++++.|+.+.+.+.... .+..+......... ....
T Consensus 80 ~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~ 154 (235)
T 3llm_A 80 IIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESI-----LPRP 154 (235)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEE-----CCCS
T ss_pred EEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhc-----cCCC
Confidence 478999997 234444333222 22358999999999999998877654432 23333322221110 0013
Q ss_pred CCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccc-cCcchH-HHHHHHHHhCCCCCcEEEEEeeCcchH
Q psy13286 74 KVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKL-LSQDFK-GMLDHVISILPHERQILLYSATFPLTV 143 (351)
Q Consensus 74 ~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~-~~~~~~-~~~~~~~~~~~~~~~~i~~SaT~~~~~ 143 (351)
.++|+|+||+++.+.+.. .+.+++++|+||+|.. .+.+|. ..+..+.... ++.|++++|||++...
T Consensus 155 ~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 155 HASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSM 222 (235)
T ss_dssp SSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHH
T ss_pred CCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHH
Confidence 578999999999998876 3789999999999985 555665 4566666665 4688999999999765
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.48 E-value=2.5e-12 Score=121.87 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=74.4
Q ss_pred HHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEe--CcCCCCCCCCC-
Q psy13286 185 NTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS--DLFTRGIDVQA- 261 (351)
Q Consensus 185 ~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T--~~~~~G~di~~- 261 (351)
..++... ++.++||++|....+.+++.++. .... ...+++..++..+++.|+ +.-.||+++ ..+.+|+|+|+
T Consensus 441 ~~l~~~~-~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~ 515 (620)
T 4a15_A 441 EDIILKV-KKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGN 515 (620)
T ss_dssp HHHHHHH-CSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------C
T ss_pred HHHHHhC-CCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCC
Confidence 3444444 46799999999999999988862 2222 555666678899999999 888999997 49999999986
Q ss_pred -CCEEEEecCCCCh-------------------h----------hHhhhccccccCCCceeEEEEeccc
Q psy13286 262 -VNVVINFDFPKMA-------------------E----------TYLHRIGRSGRYGHLGIAINLITYE 300 (351)
Q Consensus 262 -~~~Vi~~~~p~s~-------------------~----------~~~q~~GR~gR~~~~~~~i~~~~~~ 300 (351)
+++||..++|... - ...|.+||+-|...+--++++++..
T Consensus 516 ~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 516 ELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp CCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred ceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 6789999987321 1 1258889999986665555565543
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.45 E-value=1.4e-13 Score=115.09 Aligned_cols=116 Identities=20% Similarity=0.158 Sum_probs=83.8
Q ss_pred CcccccCCc--chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCce-EEEEECCcchHHHHHHHhCCCcE
Q psy13286 1 MVQARQEPT--QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVK-VMVTTGGTNLRDDIMRIYQKVHL 77 (351)
Q Consensus 1 ~~~a~tgs~--~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~I 77 (351)
+|++|||+| .+.+. .+... +.+++|++|+++|+.|+.+.++++ +++ +..+.|+.. ...+|
T Consensus 112 ll~~~tG~GKT~~a~~-~~~~~---~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~~~~g~~~---------~~~~i 174 (237)
T 2fz4_A 112 CIVLPTGSGKTHVAMA-AINEL---STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIK---------ELKPL 174 (237)
T ss_dssp EEEESSSTTHHHHHHH-HHHHS---CSCEEEEESSHHHHHHHHHHHGGG----CGGGEEEESSSCB---------CCCSE
T ss_pred EEEeCCCCCHHHHHHH-HHHHc---CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEEEEeCCCC---------CcCCE
Confidence 478899997 22211 11111 368999999999999999888763 677 777777664 35789
Q ss_pred EEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCcc
Q psy13286 78 IIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPL 141 (351)
Q Consensus 78 lv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 141 (351)
+|+|++.+......- ..++++||+||+|++.+..+.. +...+ ...+++++|||+..
T Consensus 175 ~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~~----i~~~~-~~~~~l~LSATp~r 230 (237)
T 2fz4_A 175 TVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLTATFER 230 (237)
T ss_dssp EEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHHH----HHHTC-CCSEEEEEEESCC-
T ss_pred EEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHHH----HHHhc-cCCEEEEEecCCCC
Confidence 999999997655421 2568999999999998876553 44444 36678999999874
No 94
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.94 E-value=0.00011 Score=62.74 Aligned_cols=119 Identities=11% Similarity=0.078 Sum_probs=85.2
Q ss_pred cccHHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCC
Q psy13286 177 ERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFT 254 (351)
Q Consensus 177 ~~~k~~~l~~~l~~~--~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 254 (351)
...|+..|..++... .+.+++||++......-+-..+...++....+.|.....++. -.+....+.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 567888888888744 367999999999999999999999999999999986543211 1244555655577666
Q ss_pred CCCC-----CCCCCEEEEecCCCChhh-HhhhccccccCC----CceeEEEEeccc
Q psy13286 255 RGID-----VQAVNVVINFDFPKMAET-YLHRIGRSGRYG----HLGIAINLITYE 300 (351)
Q Consensus 255 ~G~d-----i~~~~~Vi~~~~p~s~~~-~~q~~GR~gR~~----~~~~~i~~~~~~ 300 (351)
.|+| +..++.||.||..+++.. .+|.+-|+.|.| +...++-++..+
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 6776 678899999999999887 488888888863 244566666544
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.23 E-value=0.00045 Score=65.43 Aligned_cols=123 Identities=17% Similarity=0.221 Sum_probs=65.5
Q ss_pred CcccccCCc-------chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhC
Q psy13286 1 MVQARQEPT-------QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQ 73 (351)
Q Consensus 1 ~~~a~tgs~-------~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 73 (351)
++++++|+| +++.+..+. ...+.++++++||..++.++.+.+.......+++.....+ .+. . ..
T Consensus 168 vi~G~pGTGKTt~l~~ll~~l~~~~--~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~~~-~~~--~----~~ 238 (608)
T 1w36_D 168 VISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKR-IPE--D----AS 238 (608)
T ss_dssp EEECCTTSTHHHHHHHHHHHHHHTC--SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCS-CSC--C----CB
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhh--hcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHHhc-cch--h----hh
Confidence 356777776 222333221 1234689999999999999998887776655432110000 000 0 00
Q ss_pred C-CcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEee
Q psy13286 74 K-VHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSAT 138 (351)
Q Consensus 74 ~-~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 138 (351)
. ..++-.+|... . +.........++++||||++++ + ...+..++..++...|++++.-.
T Consensus 239 Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 239 TLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp TTTSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTCEEEEEECT
T ss_pred hhHhhhccCCCch-H-HHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCCEEEEEcch
Confidence 0 11122222221 1 1111222347899999999954 3 34566778888888888877644
No 96
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.54 E-value=0.038 Score=53.65 Aligned_cols=80 Identities=8% Similarity=0.086 Sum_probs=66.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-CCCCCCCCCCCEEE
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-FTRGIDVQAVNVVI 266 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~~~G~di~~~~~Vi 266 (351)
.+.++++.++++.-+...++.+++. ++.+..++|+++..++...++.+.+|..+|+|+|.. +...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 3578999999999888888777654 789999999999999999999999999999999963 44467778888877
Q ss_pred EecCC
Q psy13286 267 NFDFP 271 (351)
Q Consensus 267 ~~~~p 271 (351)
.-...
T Consensus 496 IDEaH 500 (780)
T 1gm5_A 496 IDEQH 500 (780)
T ss_dssp EESCC
T ss_pred ecccc
Confidence 65543
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.32 E-value=0.0048 Score=58.91 Aligned_cols=43 Identities=5% Similarity=-0.063 Sum_probs=30.1
Q ss_pred CcccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy13286 1 MVQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIE 46 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 46 (351)
||+.|.|+| +.-++..+. ..+.++|+++||..-+.++.+.+..
T Consensus 209 lI~GPPGTGKT~ti~~~I~~l~---~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 209 IIHGPPGTGKTTTVVEIILQAV---KQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH---HTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEcCchHHHHHHHHHHHh
Confidence 578888887 222332322 2347999999999999998887754
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.14 E-value=0.066 Score=50.82 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=29.9
Q ss_pred CcccccCCcc----hhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy13286 1 MVQARQEPTQ----FLYLNKLTPAKITSKATLIIVPTRELALQTSQICIE 46 (351)
Q Consensus 1 ~~~a~tgs~~----l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 46 (351)
+|++|+|+|- ..++..+... .+.++++++||...+.++.+.+.+
T Consensus 199 li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 199 LIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHh
Confidence 4778888872 2233332222 346999999999999998887754
No 99
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.78 E-value=0.14 Score=45.82 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=64.9
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHh---cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-C---CCCCCCCCCC
Q psy13286 191 LQINQSIIFCNSTQRVELLAKKITE---LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-F---TRGIDVQAVN 263 (351)
Q Consensus 191 ~~~~~~lIf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~---~~G~di~~~~ 263 (351)
..+.++||.+|+++-+...++.++. .++.+..++|+.+..++....+.+..|..+|+|+|+. + -.-++..+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3567899999999999999999988 4779999999999999888899999999999999973 2 1124455777
Q ss_pred EEEEecC
Q psy13286 264 VVINFDF 270 (351)
Q Consensus 264 ~Vi~~~~ 270 (351)
+||.-..
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 7776444
No 100
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=94.71 E-value=0.73 Score=43.77 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=27.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEecc
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHA 225 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~ 225 (351)
.+.+.|.+++...+..+...|.+.|+++....+
T Consensus 347 ~~diaVL~r~~~~~~~l~~~l~~~~Ip~~~~~~ 379 (647)
T 3lfu_A 347 LAECAILYRSNAQSRVLEEALLQASMPYRIYGG 379 (647)
T ss_dssp GGGEEEEESSGGGHHHHHHHHHHTTCCEEESSS
T ss_pred ccCEEEEEeCchhHHHHHHHHHHCCCCEEEeCC
Confidence 467889999999999999999999999765543
No 101
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.22 E-value=0.15 Score=49.80 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=31.0
Q ss_pred CcccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q psy13286 1 MVQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIEL 47 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 47 (351)
+|++|.|+| +..++..+... .+.++++++||...+.++.+.+.+.
T Consensus 379 lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 379 LIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 478888887 22222322221 2369999999999999999887654
No 102
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.02 E-value=0.13 Score=50.25 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=29.6
Q ss_pred CcccccCCc----chhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy13286 1 MVQARQEPT----QFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIE 46 (351)
Q Consensus 1 ~~~a~tgs~----~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 46 (351)
+|+.|.|+| +..++..+... .+.++++++||...+.++.+.+.+
T Consensus 375 lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 375 LIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 467888886 22233333222 346999999999999888877654
No 103
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.85 E-value=0.34 Score=38.82 Aligned_cols=73 Identities=5% Similarity=0.129 Sum_probs=54.2
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc-----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-C-----CCCCCCCCC
Q psy13286 194 NQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-F-----TRGIDVQAV 262 (351)
Q Consensus 194 ~~~lIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~-----~~G~di~~~ 262 (351)
.+++|.+++++-+...++.+++. +..+..++|+.+...+. +.+..+..+|+|+|.. + ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999988888775 67888999998865544 3445577899999962 1 234566777
Q ss_pred CEEEEec
Q psy13286 263 NVVINFD 269 (351)
Q Consensus 263 ~~Vi~~~ 269 (351)
+++|.-.
T Consensus 160 ~~lViDE 166 (220)
T 1t6n_A 160 KHFILDE 166 (220)
T ss_dssp CEEEEES
T ss_pred CEEEEcC
Confidence 7777544
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.79 E-value=0.17 Score=45.40 Aligned_cols=103 Identities=15% Similarity=0.069 Sum_probs=56.0
Q ss_pred cccccCCcchhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEc
Q psy13286 2 VQARQEPTQFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIAT 81 (351)
Q Consensus 2 ~~a~tgs~~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~T 81 (351)
|.++.|+|--..+..+... .+.+|++||++++.++.+.+.+. +. . .....-|.|
T Consensus 166 I~G~aGsGKTt~I~~~~~~----~~~lVlTpT~~aa~~l~~kl~~~----~~--------~----------~~~~~~V~T 219 (446)
T 3vkw_A 166 VDGVPGCGKTKEILSRVNF----EEDLILVPGRQAAEMIRRRANAS----GI--------I----------VATKDNVRT 219 (446)
T ss_dssp EEECTTSCHHHHHHHHCCT----TTCEEEESCHHHHHHHHHHHTTT----SC--------C----------CCCTTTEEE
T ss_pred EEcCCCCCHHHHHHHHhcc----CCeEEEeCCHHHHHHHHHHhhhc----Cc--------c----------ccccceEEE
Confidence 5677788744444333221 36799999999998877665221 10 0 011223788
Q ss_pred cHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEe
Q psy13286 82 PGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSA 137 (351)
Q Consensus 82 p~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 137 (351)
.++++.. .........+.+||||+-++ +.+ .+..++...+. .+++++.-
T Consensus 220 ~dsfL~~--~~~~~~~~~d~liiDE~sm~-~~~---~l~~l~~~~~~-~~vilvGD 268 (446)
T 3vkw_A 220 VDSFLMN--YGKGARCQFKRLFIDEGLML-HTG---CVNFLVEMSLC-DIAYVYGD 268 (446)
T ss_dssp HHHHHHT--TTSSCCCCCSEEEEETGGGS-CHH---HHHHHHHHTTC-SEEEEEEC
T ss_pred eHHhhcC--CCCCCCCcCCEEEEeCcccC-CHH---HHHHHHHhCCC-CEEEEecC
Confidence 7776432 22222234799999999854 433 23333444433 44554433
No 105
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.71 E-value=0.19 Score=45.69 Aligned_cols=38 Identities=18% Similarity=0.415 Sum_probs=23.8
Q ss_pred CCCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 95 NMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 95 ~~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
....++++||||++.+... .+..+...++...+++++.
T Consensus 125 ~~~~~~~iiiDE~~~~~~~----~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 125 DLAKCRVLICDEVSMYDRK----LFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp CCSSCSEEEESCGGGCCHH----HHHHHHHHSCTTCEEEEEE
T ss_pred cccCCCEEEEECchhCCHH----HHHHHHHhccCCCEEEEEC
Confidence 3567899999999965322 3445555555455555543
No 106
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=92.40 E-value=0.38 Score=36.65 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=51.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHHh-CCCcEEEEccHHHHHHHhccCcCCCCcc
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRIY-QKVHLIIATPGRILDLMDKQVANMDHCK 100 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 100 (351)
.++||.++++.-+.++.+.+++. ++.+..++|+.+..+.. .... ...+|+|+|. .+ ...+++..++
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gld~~~~~ 105 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-VA-----ARGIDIENIS 105 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-GG-----TTTCCCSCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-hh-----hcCCchhcCC
Confidence 68999999999998888777554 78899999987654332 2222 3578999993 22 2344677888
Q ss_pred EEEEccc
Q psy13286 101 ILVLDEA 107 (351)
Q Consensus 101 lvViDE~ 107 (351)
+||.-+.
T Consensus 106 ~Vi~~~~ 112 (163)
T 2hjv_A 106 LVINYDL 112 (163)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8886543
No 107
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.33 E-value=1.1 Score=36.70 Aligned_cols=75 Identities=9% Similarity=0.147 Sum_probs=54.2
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-----C--CCCCCC
Q psy13286 191 LQINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-----F--TRGIDV 259 (351)
Q Consensus 191 ~~~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~--~~G~di 259 (351)
..+.++||.+++++-+..+++.++.. +..+..++|+.+...+...+ .+..+|+|+|.. + ..++++
T Consensus 109 ~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l 184 (249)
T 3ber_A 109 PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNL 184 (249)
T ss_dssp CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCc
Confidence 34567999999999999888887765 77888999998865544332 246799999952 1 245677
Q ss_pred CCCCEEEEec
Q psy13286 260 QAVNVVINFD 269 (351)
Q Consensus 260 ~~~~~Vi~~~ 269 (351)
.+++++|.-.
T Consensus 185 ~~~~~lViDE 194 (249)
T 3ber_A 185 RALKYLVMDE 194 (249)
T ss_dssp TTCCEEEECS
T ss_pred cccCEEEEcC
Confidence 7788777544
No 108
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.24 E-value=0.54 Score=47.94 Aligned_cols=79 Identities=9% Similarity=0.102 Sum_probs=64.9
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-cCCCCCCCCCCCEE
Q psy13286 191 LQINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD-LFTRGIDVQAVNVV 265 (351)
Q Consensus 191 ~~~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~G~di~~~~~V 265 (351)
..+.+++|.++++.-+...++.+++. +..+..+++..+..++...++.+.+|..+|+|+|. .+...+.+.++.+|
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 45678999999999998888887653 57889999999999999999999999999999995 55556777777776
Q ss_pred EEec
Q psy13286 266 INFD 269 (351)
Q Consensus 266 i~~~ 269 (351)
|.-.
T Consensus 730 IiDE 733 (1151)
T 2eyq_A 730 IVDE 733 (1151)
T ss_dssp EEES
T ss_pred EEec
Confidence 6543
No 109
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.86 E-value=0.51 Score=47.81 Aligned_cols=80 Identities=11% Similarity=0.108 Sum_probs=65.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHh---cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-CC---CCCCCCCCC
Q psy13286 191 LQINQSIIFCNSTQRVELLAKKITE---LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-FT---RGIDVQAVN 263 (351)
Q Consensus 191 ~~~~~~lIf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~~---~G~di~~~~ 263 (351)
..+.++||.+++++-+..+++.++. .++.+..++|+.+..++....+.+.+|..+|+|+|+. +. .-++..++.
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 4567899999999999999999998 4678999999999988888999999999999999962 21 114456778
Q ss_pred EEEEecC
Q psy13286 264 VVINFDF 270 (351)
Q Consensus 264 ~Vi~~~~ 270 (351)
+||.-..
T Consensus 199 ~lViDEa 205 (1104)
T 4ddu_A 199 FVFVDDV 205 (1104)
T ss_dssp EEEESCH
T ss_pred EEEEeCC
Confidence 8776544
No 110
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.86 E-value=1.2 Score=34.99 Aligned_cols=72 Identities=11% Similarity=0.130 Sum_probs=51.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHH---H-hCCCcEEEEccHHHHHHHhccCcCCCCcc
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMR---I-YQKVHLIIATPGRILDLMDKQVANMDHCK 100 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 100 (351)
+++||.++++.-+..+.+.+++. ++++..++|+.+..+.... . ....+|+|+|. .+ . ..+++..++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-~~----~-~Gldi~~v~ 124 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-VA----S-KGLDFPAIQ 124 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-HH----H-TTCCCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-ch----h-cCCCcccCC
Confidence 58999999999998888877654 7889999998765433222 2 23688999992 22 2 244677888
Q ss_pred EEEEcc
Q psy13286 101 ILVLDE 106 (351)
Q Consensus 101 lvViDE 106 (351)
+||.=+
T Consensus 125 ~VI~~d 130 (191)
T 2p6n_A 125 HVINYD 130 (191)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 887643
No 111
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.75 E-value=0.29 Score=45.84 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=25.8
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEe
Q psy13286 96 MDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSA 137 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 137 (351)
...+++|||||++++... .+..++..++...+++++.-
T Consensus 277 ~~~~dvlIIDEasml~~~----~~~~Ll~~~~~~~~lilvGD 314 (574)
T 3e1s_A 277 PAPYDLLIVDEVSMMGDA----LMLSLLAAVPPGARVLLVGD 314 (574)
T ss_dssp CCSCSEEEECCGGGCCHH----HHHHHHTTSCTTCEEEEEEC
T ss_pred cccCCEEEEcCccCCCHH----HHHHHHHhCcCCCEEEEEec
Confidence 457899999999975433 45566677766666666543
No 112
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=91.68 E-value=0.62 Score=35.47 Aligned_cols=74 Identities=8% Similarity=0.072 Sum_probs=51.5
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH---HH-hCCCcEEEEccHHHHHHHhccCcCCCCc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM---RI-YQKVHLIIATPGRILDLMDKQVANMDHC 99 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 99 (351)
++++||.++++.-+..+...+++ .++.+..++|+.+..+... .. ....+|+|+|. .+ ...+++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-LL-----ARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-GG-----TTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-hh-----hcCCCcccC
Confidence 36899999999999888877755 3788999999876543322 22 23578999993 22 234467788
Q ss_pred cEEEEccc
Q psy13286 100 KILVLDEA 107 (351)
Q Consensus 100 ~lvViDE~ 107 (351)
++||.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88876543
No 113
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=91.19 E-value=0.55 Score=43.43 Aligned_cols=59 Identities=10% Similarity=0.145 Sum_probs=55.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
++.+||.+++++-+....+.|+..++.+..++++.+..++..+...+..|..+++++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 47899999999999999999999999999999999999999999999999999999996
No 114
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=90.94 E-value=0.84 Score=36.87 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=52.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc-----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-C-----CCCCCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-F-----TRGIDVQ 260 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~-----~~G~di~ 260 (351)
.+.++||.+++++-+...++.++.. +..+..++|+.+...+.... ...+|+|+|.. + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 4568999999999999999888775 56788899998876544332 25789999962 1 2345666
Q ss_pred CCCEEEEec
Q psy13286 261 AVNVVINFD 269 (351)
Q Consensus 261 ~~~~Vi~~~ 269 (351)
+++++|.-.
T Consensus 166 ~~~~lViDE 174 (230)
T 2oxc_A 166 SIRLFILDE 174 (230)
T ss_dssp GCCEEEESS
T ss_pred cCCEEEeCC
Confidence 677666533
No 115
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=90.89 E-value=0.57 Score=44.04 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=54.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHh--hcCCccEEEEeC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDF--RSGLCRNLVCSD 251 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~ilv~T~ 251 (351)
++.+||.+|+++-+...++.|+..++.+..++|+.+..++..+...+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 46899999999999999999999999999999999999988888888 568899999997
No 116
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=90.57 E-value=0.53 Score=36.26 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=50.8
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH---HHh-CCCcEEEEccHHHHHHHhccCcCCCCc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM---RIY-QKVHLIIATPGRILDLMDKQVANMDHC 99 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 99 (351)
++++||.++++..+..+...+++ .++.+..++|+.+..+... ... ...+|+|+|.- + ...+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~-~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----C-ARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----C-CTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----h-hcCCCcccC
Confidence 36999999999999888877654 4788999999876544322 222 35789999931 1 234467788
Q ss_pred cEEEEc
Q psy13286 100 KILVLD 105 (351)
Q Consensus 100 ~lvViD 105 (351)
++||.-
T Consensus 104 ~~Vi~~ 109 (175)
T 2rb4_A 104 TIVVNF 109 (175)
T ss_dssp EEEEES
T ss_pred CEEEEe
Confidence 888853
No 117
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=90.52 E-value=1.4 Score=35.12 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=51.0
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH---HHh-CCCcEEEEccHHHHHHHhccCcCCCCc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM---RIY-QKVHLIIATPGRILDLMDKQVANMDHC 99 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 99 (351)
+.++||.++++.-+.++.+.+++. ++.+..++|+.+..+... ... ...+|+|+|. .+ ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-ARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-TCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-hcCCCCccC
Confidence 369999999999998888877654 788999999977544322 222 3578999993 12 234567788
Q ss_pred cEEEE
Q psy13286 100 KILVL 104 (351)
Q Consensus 100 ~lvVi 104 (351)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88774
No 118
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=90.33 E-value=1.5 Score=35.66 Aligned_cols=73 Identities=4% Similarity=-0.000 Sum_probs=52.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-----C-CCCCCCCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-----F-TRGIDVQAV 262 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~-~~G~di~~~ 262 (351)
+.++||.+++++-+..+++.++.. +..+..++|+.+...+...+. + ..+|+|+|.. + ....++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 567999999999998887777654 788899999988766554433 2 4789999961 1 224567778
Q ss_pred CEEEEec
Q psy13286 263 NVVINFD 269 (351)
Q Consensus 263 ~~Vi~~~ 269 (351)
.++|.-.
T Consensus 178 ~~lViDE 184 (242)
T 3fe2_A 178 TYLVLDE 184 (242)
T ss_dssp CEEEETT
T ss_pred cEEEEeC
Confidence 7776543
No 119
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=89.92 E-value=0.41 Score=37.42 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=43.9
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHH-hCCCcEEEEccHHHHHHHhccCcCCCC
Q psy13286 23 TSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRI-YQKVHLIIATPGRILDLMDKQVANMDH 98 (351)
Q Consensus 23 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 98 (351)
.+.++||.++++.-+..+...+++ .++.+..++|+.+..+. +... ....+|+|+|. .+. ..+++..
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~-----~Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VAA-----RGLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHH----TTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH----cCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-hhh-----cCCCccc
Confidence 347899999999999888877755 47889999987654322 2222 23678999993 222 2345777
Q ss_pred ccEEEEc
Q psy13286 99 CKILVLD 105 (351)
Q Consensus 99 ~~lvViD 105 (351)
+++||.=
T Consensus 115 ~~~VI~~ 121 (185)
T 2jgn_A 115 VKHVINF 121 (185)
T ss_dssp BSEEEES
T ss_pred CCEEEEe
Confidence 8877763
No 120
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=88.13 E-value=0.84 Score=35.06 Aligned_cols=72 Identities=13% Similarity=0.223 Sum_probs=50.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHHh-CCCcEEEEccHHHHHHHhccCcCCCCcc
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRIY-QKVHLIIATPGRILDLMDKQVANMDHCK 100 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 100 (351)
.++||.++++.-+..+++.+++. ++.+..++|+.+..+.. .... ...+|+|+|. .+ ...+++..++
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldi~~~~ 101 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-LF-----GRGMDIERVN 101 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-CC-----STTCCGGGCS
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-ch-----hcCcchhhCC
Confidence 68999999999998888777554 78899999987654432 2222 3588999994 22 2244567778
Q ss_pred EEEEcc
Q psy13286 101 ILVLDE 106 (351)
Q Consensus 101 lvViDE 106 (351)
+||.-+
T Consensus 102 ~Vi~~d 107 (172)
T 1t5i_A 102 IAFNYD 107 (172)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 877644
No 121
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=88.13 E-value=1.6 Score=34.99 Aligned_cols=74 Identities=3% Similarity=0.039 Sum_probs=48.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc---CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc------CCCCCCCCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL---GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL------FTRGIDVQAV 262 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~------~~~G~di~~~ 262 (351)
.+.++||.+++++-+..+++.++.. +..+..++|+.+...+... +. ...+|+|+|.. .....++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999999988875 6778888888765443322 22 34799999951 2235567778
Q ss_pred CEEEEec
Q psy13286 263 NVVINFD 269 (351)
Q Consensus 263 ~~Vi~~~ 269 (351)
++||.-.
T Consensus 169 ~~lViDE 175 (228)
T 3iuy_A 169 TYLVIDE 175 (228)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 7776544
No 122
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=87.83 E-value=1.4 Score=35.64 Aligned_cols=75 Identities=11% Similarity=0.175 Sum_probs=46.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-----cCC-CCCCCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD-----LFT-RGIDVQA 261 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~-~G~di~~ 261 (351)
.+.++||.+++++-+..+++.++.. +..+..++|+.... ...+.+..+..+|+|+|. .+. ..+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999999888775 45667777766543 223455567789999994 222 2356667
Q ss_pred CCEEEEec
Q psy13286 262 VNVVINFD 269 (351)
Q Consensus 262 ~~~Vi~~~ 269 (351)
+.+||.-.
T Consensus 174 ~~~lViDE 181 (237)
T 3bor_A 174 IKMFVLDE 181 (237)
T ss_dssp CCEEEEES
T ss_pred CcEEEECC
Confidence 77777543
No 123
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=87.69 E-value=2.7 Score=36.75 Aligned_cols=74 Identities=5% Similarity=0.118 Sum_probs=55.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc-----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-C-----CCCCCCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-F-----TRGIDVQA 261 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~-----~~G~di~~ 261 (351)
+.++||.|+++.-+...++.+++. +..+..++|+.+...... .+.++..+|+|+|.. + ....++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999988888775 688899999988755443 345577899999952 1 23456677
Q ss_pred CCEEEEec
Q psy13286 262 VNVVINFD 269 (351)
Q Consensus 262 ~~~Vi~~~ 269 (351)
+++||.-.
T Consensus 153 ~~~vViDE 160 (391)
T 1xti_A 153 IKHFILDE 160 (391)
T ss_dssp CSEEEECS
T ss_pred cCEEEEeC
Confidence 77777544
No 124
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=87.66 E-value=3 Score=32.67 Aligned_cols=73 Identities=5% Similarity=0.017 Sum_probs=50.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc-----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-----CC-CCCCCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-----FT-RGIDVQA 261 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~-~G~di~~ 261 (351)
+.+++|.+++++-+...++.++.. +..+..++|+.+...... .+ .+..+|+|+|.. +. ...++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999888888764 567888899887654322 22 346789999962 22 2345667
Q ss_pred CCEEEEec
Q psy13286 262 VNVVINFD 269 (351)
Q Consensus 262 ~~~Vi~~~ 269 (351)
++++|.-.
T Consensus 147 ~~~lViDE 154 (206)
T 1vec_A 147 VQMIVLDE 154 (206)
T ss_dssp CCEEEEET
T ss_pred CCEEEEEC
Confidence 77777543
No 125
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=86.52 E-value=2.2 Score=37.54 Aligned_cols=75 Identities=7% Similarity=0.079 Sum_probs=45.4
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhCCc----eEEEEECCcchHHHHHHHhCCCcEEEEc--cHHHHHHHhccCcCC
Q psy13286 23 TSKATLIIVPTRELALQTSQICIELAKHLNV----KVMVTTGGTNLRDDIMRIYQKVHLIIAT--PGRILDLMDKQVANM 96 (351)
Q Consensus 23 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~Ilv~T--p~~l~~~l~~~~~~~ 96 (351)
.+..+++++|+..-+..+.+.++.+....+. .+... .... ..+.++..|.+.+ |+.+ .-
T Consensus 207 ~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~~~~~~~-~~~~-----I~f~nGs~i~~lsa~~~sl---------rG 271 (385)
T 2o0j_A 207 KDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEW-NKGS-----IELDNGSSIGAYASSPDAV---------RG 271 (385)
T ss_dssp SSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTSCCEEEE-CSSE-----EEETTSCEEEEEECSHHHH---------HT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhhhhhccC-CccE-----EEeCCCCEEEEEECCCCCc---------cC
Confidence 3468999999999999999988888765431 11111 1100 0112345554443 2222 13
Q ss_pred CCccEEEEcccccccC
Q psy13286 97 DHCKILVLDEADKLLS 112 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~ 112 (351)
..++++|+||+|.+.+
T Consensus 272 ~~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 272 NSFAMIYIEDCAFIPN 287 (385)
T ss_dssp SCCSEEEEESGGGSTT
T ss_pred CCCCEEEechhhhcCC
Confidence 4568999999997654
No 126
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=86.22 E-value=3.7 Score=32.08 Aligned_cols=74 Identities=8% Similarity=0.097 Sum_probs=51.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc--CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-----C-CCCCCCCCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-----F-TRGIDVQAVN 263 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~-~~G~di~~~~ 263 (351)
.+.+++|.+++++-+...++.++.. ...+..++|+.+.......+. ...+|+|+|.. + ...+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3567999999999999999999887 467788888876544333222 24789999961 1 2245667777
Q ss_pred EEEEec
Q psy13286 264 VVINFD 269 (351)
Q Consensus 264 ~Vi~~~ 269 (351)
++|.-.
T Consensus 147 ~iViDE 152 (207)
T 2gxq_A 147 VAVLDE 152 (207)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 777644
No 127
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=85.94 E-value=2.3 Score=37.52 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=51.5
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHH---H-hCCCcEEEEccHHHHHHHhccCcCCCC
Q psy13286 23 TSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMR---I-YQKVHLIIATPGRILDLMDKQVANMDH 98 (351)
Q Consensus 23 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 98 (351)
.+.++||.++++.-+.++++.+++ .++.+..++|+.+..+.... . ....+|+|+|. .+. ..+++..
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH----CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCccc
Confidence 457899999999999888877755 37889999998875433222 2 23678999995 222 2456778
Q ss_pred ccEEEE
Q psy13286 99 CKILVL 104 (351)
Q Consensus 99 ~~lvVi 104 (351)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888775
No 128
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=85.38 E-value=1.7 Score=34.76 Aligned_cols=73 Identities=10% Similarity=0.060 Sum_probs=46.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc------CCCCCCCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL------FTRGIDVQA 261 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~------~~~G~di~~ 261 (351)
.+.++||.+++++-+...++.++.. +..+..++|+.+...... .+. ..+|+|+|.. .....++.+
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GLR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cCC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 4568999999999999888888764 567888888876544332 222 3789999962 133556667
Q ss_pred CCEEEEec
Q psy13286 262 VNVVINFD 269 (351)
Q Consensus 262 ~~~Vi~~~ 269 (351)
+.+||.-.
T Consensus 156 ~~~iViDE 163 (224)
T 1qde_A 156 IKMFILDE 163 (224)
T ss_dssp CCEEEEET
T ss_pred CcEEEEcC
Confidence 77777544
No 129
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=84.59 E-value=5.8 Score=27.20 Aligned_cols=51 Identities=10% Similarity=0.221 Sum_probs=42.0
Q ss_pred EEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccE
Q psy13286 196 SIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRN 246 (351)
Q Consensus 196 ~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~i 246 (351)
.++|.+..+....+...+++.|..+..++++....-|.+-++.|...-.++
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 357777788888999999999999999999998888888888887654443
No 130
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=84.14 E-value=3.1 Score=35.20 Aligned_cols=73 Identities=11% Similarity=0.148 Sum_probs=51.0
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHH---H-hCCCcEEEEccHHHHHHHhccCcCCCCc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMR---I-YQKVHLIIATPGRILDLMDKQVANMDHC 99 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 99 (351)
+.++||.++++.-+..+.+.+.+ .++.+..++|+.+..+.... . ....+|+|+|. . -...+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----v-a~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----V-AARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----T-TTCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----h-hhcCccccce
Confidence 37999999999998777766643 48899999999765443222 2 23688999993 1 2234567888
Q ss_pred cEEEEcc
Q psy13286 100 KILVLDE 106 (351)
Q Consensus 100 ~lvViDE 106 (351)
++||.=+
T Consensus 98 ~~VI~~d 104 (300)
T 3i32_A 98 DLVVHYR 104 (300)
T ss_dssp SEEEESS
T ss_pred eEEEEcC
Confidence 8887533
No 131
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=83.65 E-value=4.6 Score=32.90 Aligned_cols=73 Identities=8% Similarity=0.083 Sum_probs=50.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-C-----CCCCCCCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-F-----TRGIDVQAV 262 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~-----~~G~di~~~ 262 (351)
+.++||.+++++-+...++.++.. +..+..++|+.+....... + ....+|+|+|.. + ...+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999999888888764 4667788888765443322 2 245789999962 1 224567777
Q ss_pred CEEEEec
Q psy13286 263 NVVINFD 269 (351)
Q Consensus 263 ~~Vi~~~ 269 (351)
+++|.-.
T Consensus 176 ~~lViDE 182 (253)
T 1wrb_A 176 KYIVLDE 182 (253)
T ss_dssp CEEEEET
T ss_pred CEEEEeC
Confidence 7777544
No 132
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=83.33 E-value=1 Score=43.03 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=32.7
Q ss_pred cccccCCcchhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHh
Q psy13286 2 VQARQEPTQFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAK 49 (351)
Q Consensus 2 ~~a~tgs~~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 49 (351)
+...|||+--.+++.+..... ..+|||+|+..++.|+++.++.|..
T Consensus 33 l~g~tgs~kt~~~a~~~~~~~--~~~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 33 LLGATGTGKTVTMAKVIEALG--RPALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp EEECTTSCHHHHHHHHHHHHT--CCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred EEcCCCcHHHHHHHHHHHHhC--CCEEEEecCHHHHHHHHHHHHHHCC
Confidence 345688874444443332222 3699999999999999999999964
No 133
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=83.27 E-value=4.4 Score=32.34 Aligned_cols=104 Identities=11% Similarity=0.076 Sum_probs=43.8
Q ss_pred CcchhhhcccCcCCCCCceEEEEcC-----CHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhC----C-CcE
Q psy13286 8 PTQFLYLNKLTPAKITSKATLIIVP-----TRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQ----K-VHL 77 (351)
Q Consensus 8 s~~l~~l~~l~~~~~~~~~~lil~P-----~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~-~~I 77 (351)
|+++|--..+......+...+|..| |.+|.... .++. ..+.++..+......+.....+.+ . ..+
T Consensus 12 ~~~~~~~~~m~~~~~~G~I~vitG~M~sGKTT~Llr~~----~r~~-~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~ 86 (219)
T 3e2i_A 12 SGLVPRGSHMYETYHSGWIECITGSMFSGKSEELIRRL----RRGI-YAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAI 86 (219)
T ss_dssp ---------------CCEEEEEEECTTSCHHHHHHHHH----HHHH-HTTCCEEEEEEC-----------CBTTBCCEEE
T ss_pred cCcccCCceEeeccCCceEEEEECCCCCCHHHHHHHHH----HHHH-HcCCceEEEEeccCCcchhhhHHHhcCCceeeE
Confidence 4677766666555555567777777 55555443 2222 235666666554433322112211 1 224
Q ss_pred EEEccHHHHHHHhccCcCCCCccEEEEcccccccCcchHHHHHHHH
Q psy13286 78 IIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVI 123 (351)
Q Consensus 78 lv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~~~~~~~~~~~ 123 (351)
.+..+..+...+ ..++++|+|||++- ++...-..+..+.
T Consensus 87 ~v~~~~di~~~i------~~~~dvV~IDEaQF-f~~~~v~~l~~la 125 (219)
T 3e2i_A 87 NISKASEIMTHD------LTNVDVIGIDEVQF-FDDEIVSIVEKLS 125 (219)
T ss_dssp EESSGGGGGGSC------CTTCSEEEECCGGG-SCTHHHHHHHHHH
T ss_pred EeCCHHHHHHHH------hcCCCEEEEechhc-CCHHHHHHHHHHH
Confidence 455554443322 25778999999994 4544555555555
No 134
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=82.99 E-value=1.3 Score=30.34 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=32.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 228 (351)
+..++++||.+-..+...+..|+..|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3468999999988999999999999999999999864
No 135
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=82.72 E-value=1.3 Score=31.01 Aligned_cols=38 Identities=11% Similarity=0.235 Sum_probs=33.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 229 (351)
+..++++||.+-..+...+..|+..|+++..+.|++..
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 35689999999888999999999999999999998653
No 136
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=82.53 E-value=2.1 Score=38.31 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=40.1
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHH-hCCCcEEEEcc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRI-YQKVHLIIATP 82 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp 82 (351)
+++++|++|++.-+.++++.+++. +.++..++|..... .+... ....+|+|+|.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~-~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFES-EYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHH-HTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHH-HHHhhcCCCCeEEEECc
Confidence 368999999999999888887665 78899999874322 22222 34689999995
No 137
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=82.51 E-value=5 Score=38.98 Aligned_cols=59 Identities=8% Similarity=0.069 Sum_probs=46.4
Q ss_pred HHhhCCCCcEEEEeCchHHHHHHHHHHHh----cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 187 LFSKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 187 ~l~~~~~~~~lIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
+++...+..++|.|++++-|...++.+.. .|+.+..+.|+++...|.... ..+|+++|+
T Consensus 118 ~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 118 YLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp HHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred HHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 33555667899999999999988877755 489999999999987655432 268999996
No 138
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=82.45 E-value=6 Score=32.51 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=52.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-----cC--CCCCCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD-----LF--TRGIDVQ 260 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~--~~G~di~ 260 (351)
.+.++||.+++++-+...++.+++. +..+..+.|+........ .+..+ .+|+|+|+ .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3567999999999999998888774 566778888887654433 33344 79999995 11 2346777
Q ss_pred CCCEEEEec
Q psy13286 261 AVNVVINFD 269 (351)
Q Consensus 261 ~~~~Vi~~~ 269 (351)
++.+||.-.
T Consensus 201 ~l~~lViDE 209 (262)
T 3ly5_A 201 NLQCLVIDE 209 (262)
T ss_dssp TCCEEEECS
T ss_pred cCCEEEEcC
Confidence 888777543
No 139
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=82.10 E-value=2.5 Score=40.21 Aligned_cols=79 Identities=14% Similarity=0.214 Sum_probs=56.7
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHH---Hh-CCCcEEEEccHHHHHHHhccCcCCCC
Q psy13286 23 TSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMR---IY-QKVHLIIATPGRILDLMDKQVANMDH 98 (351)
Q Consensus 23 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 98 (351)
.+.++||.++|+.-+..+.+.+++. ++++..++|+....+.... .. ...+|+|+|- .+ ...+++..
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCC
Confidence 3479999999999998877776554 7888888888654333222 22 3588999985 12 34557788
Q ss_pred ccEEEEccccccc
Q psy13286 99 CKILVLDEADKLL 111 (351)
Q Consensus 99 ~~lvViDE~h~~~ 111 (351)
+++||+-+++...
T Consensus 514 v~lVi~~d~d~~G 526 (661)
T 2d7d_A 514 VSLVAILDADKEG 526 (661)
T ss_dssp EEEEEETTTTCCT
T ss_pred CCEEEEeCccccc
Confidence 9999999988543
No 140
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=82.05 E-value=1.3 Score=30.62 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=32.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 228 (351)
+..++++||.+-..+...+..|+..|+++..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3467999999988899999999999999999998864
No 141
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=81.78 E-value=3.7 Score=41.44 Aligned_cols=76 Identities=12% Similarity=0.255 Sum_probs=57.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CC----eEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-CCCC-CCCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL----GY----CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-FTRG-IDVQA 261 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~~~G-~di~~ 261 (351)
.+.+++|.+++++-+..+++.++.. +. .+..++|+.+...+.+..+.+++ .+|+|+|+. +..- -++.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 4578999999999999888888764 45 78899999998888877888877 899999962 1111 11557
Q ss_pred CCEEEEec
Q psy13286 262 VNVVINFD 269 (351)
Q Consensus 262 ~~~Vi~~~ 269 (351)
+++||.-.
T Consensus 176 l~~lViDE 183 (1054)
T 1gku_B 176 FDFIFVDD 183 (1054)
T ss_dssp CSEEEESC
T ss_pred CCEEEEeC
Confidence 77777544
No 142
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=81.57 E-value=8.2 Score=35.72 Aligned_cols=79 Identities=9% Similarity=0.090 Sum_probs=56.3
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHH---H-hCCCcEEEEccHHHHHHHhccCcCCCC
Q psy13286 23 TSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMR---I-YQKVHLIIATPGRILDLMDKQVANMDH 98 (351)
Q Consensus 23 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 98 (351)
.+.++||.++++.-+.++++.+++... .++.+..++|+....+.... . ....+|+|+|. .+ ...+++..
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~GiDip~ 410 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPN 410 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hh-hcCCCccc
Confidence 347999999999999999998877643 26788899998765433222 2 24688999995 22 33557788
Q ss_pred ccEEEEcccc
Q psy13286 99 CKILVLDEAD 108 (351)
Q Consensus 99 ~~lvViDE~h 108 (351)
+++||.-..-
T Consensus 411 v~~VI~~~~p 420 (563)
T 3i5x_A 411 VHEVLQIGVP 420 (563)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEEECCC
Confidence 8888865533
No 143
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=81.47 E-value=1.7 Score=36.73 Aligned_cols=70 Identities=10% Similarity=0.003 Sum_probs=47.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc-----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-----C-C-CCCCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-----F-T-RGIDVQ 260 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~-~-~G~di~ 260 (351)
+.++||.+++++-|..+++.++.. +..+....|+.....+ .....+|+|+|+- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 447999999999999988888764 3566667766543211 1345689999962 1 1 356777
Q ss_pred CCCEEEEec
Q psy13286 261 AVNVVINFD 269 (351)
Q Consensus 261 ~~~~Vi~~~ 269 (351)
++.++|.-.
T Consensus 235 ~l~~lVlDE 243 (300)
T 3fmo_B 235 KIKVFVLDE 243 (300)
T ss_dssp GCSEEEETT
T ss_pred hceEEEEeC
Confidence 888877544
No 144
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=81.04 E-value=2.2 Score=38.33 Aligned_cols=69 Identities=19% Similarity=0.126 Sum_probs=45.9
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHH-hCCCcEEEEccHHHHHHHhccCcCCCCccEE
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRI-YQKVHLIIATPGRILDLMDKQVANMDHCKIL 102 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lv 102 (351)
+++++|+||++.-+.++++.+++. +.++..++|.... ..+... ....+|+|+|. .+ ...+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~-~~~~~F~~g~~~vLVaT~-----v~-e~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFE-REYPTIKQKKPDFILATD-----IA-EMGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC---------CCCSEEEESS-----ST-TCCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHH-HHHhhhcCCCceEEEECC-----hh-heeeccC-ceEE
Confidence 468999999999998888877654 7889999995432 222233 23588999995 12 2244667 7887
Q ss_pred EE
Q psy13286 103 VL 104 (351)
Q Consensus 103 Vi 104 (351)
|.
T Consensus 245 I~ 246 (440)
T 1yks_A 245 LD 246 (440)
T ss_dssp EE
T ss_pred Ee
Confidence 63
No 145
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=80.91 E-value=8.9 Score=35.69 Aligned_cols=78 Identities=9% Similarity=0.085 Sum_probs=56.3
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHH---H-hCCCcEEEEccHHHHHHHhccCcCCCCc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMR---I-YQKVHLIIATPGRILDLMDKQVANMDHC 99 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 99 (351)
+.++||.++++.-+..+++.+++... .++.+..++|+.+..+.... . ....+|+|+|. .+ ...+++..+
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCcccC
Confidence 47999999999999999998877643 26788899998765433222 2 24688999995 22 235577888
Q ss_pred cEEEEcccc
Q psy13286 100 KILVLDEAD 108 (351)
Q Consensus 100 ~lvViDE~h 108 (351)
++||.-..-
T Consensus 361 ~~VI~~~~p 369 (579)
T 3sqw_A 361 HEVLQIGVP 369 (579)
T ss_dssp CEEEEESCC
T ss_pred CEEEEcCCC
Confidence 988876543
No 146
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=80.62 E-value=5.3 Score=38.81 Aligned_cols=57 Identities=9% Similarity=-0.006 Sum_probs=44.6
Q ss_pred hhCCCCcEEEEeCchHHHHHHHHHHHh----cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 189 SKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 189 ~~~~~~~~lIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
+...+.+++|.++|+.-|...++.+.. .++.+..+.|+++...|.... ..+|+|+|+
T Consensus 111 ~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 111 NALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp HHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 445567899999999999888777755 488999999999976554432 268999996
No 147
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=80.52 E-value=27 Score=30.05 Aligned_cols=76 Identities=12% Similarity=0.085 Sum_probs=54.3
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHHh-CCCcEEEEccHHHHHHHhccCcCCCCc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRIY-QKVHLIIATPGRILDLMDKQVANMDHC 99 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 99 (351)
++++||.++++.-+..+++.+++. +..+..++|+.+..+.. .... ...+|+|+|. .-...+++..+
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccC
Confidence 379999999999998888777554 77888999987654332 2222 3578999994 22345578889
Q ss_pred cEEEEccccc
Q psy13286 100 KILVLDEADK 109 (351)
Q Consensus 100 ~lvViDE~h~ 109 (351)
++||.-+...
T Consensus 313 ~~Vi~~~~p~ 322 (395)
T 3pey_A 313 SMVVNYDLPT 322 (395)
T ss_dssp EEEEESSCCB
T ss_pred CEEEEcCCCC
Confidence 9988766553
No 148
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=80.47 E-value=4.1 Score=32.77 Aligned_cols=73 Identities=10% Similarity=0.106 Sum_probs=49.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcC----CeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-C----C--CCCCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELG----YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-F----T--RGIDVQ 260 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~----~--~G~di~ 260 (351)
.+.++||.+++++-+...++.++..+ ..+..++|+.+........ +..+|+|+|.. + . ..++..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 35689999999999999988887753 6788889887654433222 45799999962 1 1 235666
Q ss_pred CCCEEEEec
Q psy13286 261 AVNVVINFD 269 (351)
Q Consensus 261 ~~~~Vi~~~ 269 (351)
+++++|.-.
T Consensus 171 ~~~~lViDE 179 (236)
T 2pl3_A 171 DLQMLVLDE 179 (236)
T ss_dssp TCCEEEETT
T ss_pred cccEEEEeC
Confidence 777766533
No 149
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=80.09 E-value=6.9 Score=38.26 Aligned_cols=60 Identities=15% Similarity=0.059 Sum_probs=47.1
Q ss_pred HHHhhCCCCcEEEEeCchHHHHHHHHHHHh----cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 186 TLFSKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 186 ~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
.+++...+.+++|.++++.-|.+.++++.. .|+.+.++.|+++...|.... ..+|+++|+
T Consensus 145 ~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 145 AYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp HHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 344556677899999999999888777755 489999999999987665543 268999996
No 150
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=79.96 E-value=2.1 Score=28.89 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=31.1
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCC
Q psy13286 194 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 228 (351)
Q Consensus 194 ~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 228 (351)
.++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67999999988899999999999988888888864
No 151
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=79.52 E-value=7.6 Score=33.77 Aligned_cols=73 Identities=8% Similarity=0.026 Sum_probs=51.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc------CCCCCCCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL------FTRGIDVQA 261 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~------~~~G~di~~ 261 (351)
.+.++||.|+++.-+...++.+++. +..+..++|+.+......... ..+|+|+|.. ........+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 4568999999999999888888764 577888999988765544433 3579999952 122345566
Q ss_pred CCEEEEec
Q psy13286 262 VNVVINFD 269 (351)
Q Consensus 262 ~~~Vi~~~ 269 (351)
+++||.-.
T Consensus 163 ~~~vIiDE 170 (394)
T 1fuu_A 163 IKMFILDE 170 (394)
T ss_dssp CCEEEEET
T ss_pred CcEEEEEC
Confidence 77776544
No 152
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=79.20 E-value=6.9 Score=34.28 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=51.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH---HHh-CCCcEEEEccHHHHHHHhccCcCCCCcc
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM---RIY-QKVHLIIATPGRILDLMDKQVANMDHCK 100 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 100 (351)
+++||.++++.-+..+++.+++. +..+..++|+.+..+... ... ...+|+|+|. . -...+++..++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~~~ 336 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----V-CARGIDVEQVS 336 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTSSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----c-cccCCCccCCC
Confidence 68999999999998888877654 778889999876544322 222 3578999994 2 23355778888
Q ss_pred EEEEcc
Q psy13286 101 ILVLDE 106 (351)
Q Consensus 101 lvViDE 106 (351)
+||.-.
T Consensus 337 ~Vi~~~ 342 (412)
T 3fht_A 337 VVINFD 342 (412)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 888543
No 153
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=79.08 E-value=8.2 Score=33.72 Aligned_cols=72 Identities=7% Similarity=0.089 Sum_probs=51.2
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHHh-CCCcEEEEccHHHHHHHhccCcCCCCc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRIY-QKVHLIIATPGRILDLMDKQVANMDHC 99 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 99 (351)
++++||.++++.-+..+++.+++. +..+..++|+.+..+.. .... ...+|+|+|. . -...+++..+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~-~~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----L-LTRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----C-SSSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----c-cccCCCccCC
Confidence 368999999999998888887665 67888999987654332 2222 3578999994 1 2234567788
Q ss_pred cEEEEc
Q psy13286 100 KILVLD 105 (351)
Q Consensus 100 ~lvViD 105 (351)
++||.-
T Consensus 328 ~~Vi~~ 333 (400)
T 1s2m_A 328 NVVINF 333 (400)
T ss_dssp EEEEES
T ss_pred CEEEEe
Confidence 887753
No 154
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=78.84 E-value=7.9 Score=34.56 Aligned_cols=70 Identities=14% Similarity=0.110 Sum_probs=50.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHHh-CCCcEEEEccHHHHHHHhccCcCCCCccE
Q psy13286 26 ATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRIY-QKVHLIIATPGRILDLMDKQVANMDHCKI 101 (351)
Q Consensus 26 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~l 101 (351)
++||.++++.-+..+.+.+++ .++.+..++|+....+.. .... ...+|+|+|. . -...+++..+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v-~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSE----KEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----V-ASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHH----TTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----G-GTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----h-hhCCCCcccCCE
Confidence 499999999999888877654 378899999987654332 2222 3588999995 2 233557888888
Q ss_pred EEEc
Q psy13286 102 LVLD 105 (351)
Q Consensus 102 vViD 105 (351)
||.=
T Consensus 372 VI~~ 375 (434)
T 2db3_A 372 VINY 375 (434)
T ss_dssp EEES
T ss_pred EEEE
Confidence 8753
No 155
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=78.53 E-value=2 Score=29.78 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=31.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 228 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 228 (351)
..++++||.+-..+...+..|++.|+.+..+.|++.
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 467899999888888999999999999888888753
No 156
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=77.74 E-value=8 Score=33.94 Aligned_cols=72 Identities=11% Similarity=0.129 Sum_probs=50.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHH---HH-hCCCcEEEEccHHHHHHHhccCcCCCCcc
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIM---RI-YQKVHLIIATPGRILDLMDKQVANMDHCK 100 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 100 (351)
.++||.++++.-+.++.+.+++ .++.+..++|+.+..+... .. ....+|+|+|. .+ ...+++..++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~v~ 346 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMRE----ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQVS 346 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTTEE
T ss_pred CcEEEEEcCHHHHHHHHHHHHh----CCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCcccCC
Confidence 5899999999999888777755 3778899999876543322 22 23578999995 22 3345778888
Q ss_pred EEEEcc
Q psy13286 101 ILVLDE 106 (351)
Q Consensus 101 lvViDE 106 (351)
+||.-+
T Consensus 347 ~Vi~~~ 352 (410)
T 2j0s_A 347 LIINYD 352 (410)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 887533
No 157
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=77.07 E-value=2.5 Score=29.30 Aligned_cols=38 Identities=5% Similarity=0.157 Sum_probs=31.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~ 229 (351)
+..++++||.+-..+...+..|+..|+. +..+.|++..
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 3567999999988899999999999985 8888888643
No 158
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=76.64 E-value=16 Score=31.20 Aligned_cols=73 Identities=14% Similarity=0.059 Sum_probs=51.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-C-----CCCCCCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-F-----TRGIDVQA 261 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~-----~~G~di~~ 261 (351)
++.+++|.++++.-+...++.++.. +..+..++|+........... ..+|+|+|.. + ...+++.+
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCccccc
Confidence 4678999999999999888888774 567888888887654433322 4689999952 1 22345667
Q ss_pred CCEEEEec
Q psy13286 262 VNVVINFD 269 (351)
Q Consensus 262 ~~~Vi~~~ 269 (351)
+++||.-.
T Consensus 148 ~~~iIiDE 155 (367)
T 1hv8_A 148 VKYFILDE 155 (367)
T ss_dssp CCEEEEET
T ss_pred CCEEEEeC
Confidence 77776544
No 159
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=75.97 E-value=14 Score=32.80 Aligned_cols=74 Identities=9% Similarity=0.144 Sum_probs=53.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc-CC---eEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-C-----CCCCCCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL-GY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-F-----TRGIDVQA 261 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~-----~~G~di~~ 261 (351)
.+.++||.|+++.-+...++.+++. +. .+..++|+....++..... ..+|+|+|.- + ...+...+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5679999999999999888888876 55 7899999998876554433 3589999952 2 12345667
Q ss_pred CCEEEEecC
Q psy13286 262 VNVVINFDF 270 (351)
Q Consensus 262 ~~~Vi~~~~ 270 (351)
.++||.-..
T Consensus 126 ~~~vIiDEa 134 (494)
T 1wp9_A 126 VSLIVFDEA 134 (494)
T ss_dssp CSEEEEETG
T ss_pred ceEEEEECC
Confidence 777775443
No 160
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=75.88 E-value=7.7 Score=38.10 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=47.1
Q ss_pred HHHhhCCCCcEEEEeCchHHHHHHHHHHHh----cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 186 TLFSKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 186 ~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
-++....+.+++|.++|+.-|...++.+.. .|+.+..+.|+++...|.... ..+|+++|.
T Consensus 113 ~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 113 VALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 334556677899999999998887777655 489999999999977666543 379999996
No 161
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=75.36 E-value=4.5 Score=29.09 Aligned_cols=36 Identities=17% Similarity=0.427 Sum_probs=31.2
Q ss_pred CcEEEEe-CchHHHHHHHHHHHhcCCeEEEeccCCCH
Q psy13286 194 NQSIIFC-NSTQRVELLAKKITELGYCCYYIHARMAQ 229 (351)
Q Consensus 194 ~~~lIf~-~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 229 (351)
.++++|| .+-..+..++..|+..|+++..+.|++..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 6899999 57778889999999999999999998764
No 162
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=75.07 E-value=2.7 Score=33.39 Aligned_cols=73 Identities=5% Similarity=0.058 Sum_probs=48.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc--------CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-----CC-CCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL--------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-----FT-RGID 258 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~-~G~d 258 (351)
+.+++|.+++++-+...++.+++. +..+..++|+.+..... +.+ ....+|+|+|.. +. ..++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 468999999999999888887664 56777888877543221 112 235789999951 22 2345
Q ss_pred CCCCCEEEEec
Q psy13286 259 VQAVNVVINFD 269 (351)
Q Consensus 259 i~~~~~Vi~~~ 269 (351)
+.+++++|.-.
T Consensus 148 ~~~~~~lViDE 158 (219)
T 1q0u_A 148 VHTAHILVVDE 158 (219)
T ss_dssp GGGCCEEEECS
T ss_pred cCcceEEEEcC
Confidence 66677666533
No 163
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=77.03 E-value=0.6 Score=35.78 Aligned_cols=73 Identities=11% Similarity=0.096 Sum_probs=47.0
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHH---Hh-CCCcEEEEccHHHHHHHhccCcCCCCc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMR---IY-QKVHLIIATPGRILDLMDKQVANMDHC 99 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 99 (351)
+.++||.++++.-+..+.+.+++. ++.+..++|+.+..+.... .. ...+|+|+|. .+. ..+++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~-----~Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-VAA-----RGIDIPDV 99 (170)
Confidence 368999999999998888777554 6778888887654332211 11 2467899983 221 12345666
Q ss_pred cEEEEcc
Q psy13286 100 KILVLDE 106 (351)
Q Consensus 100 ~lvViDE 106 (351)
++||.-+
T Consensus 100 ~~Vi~~~ 106 (170)
T 2yjt_D 100 SHVFNFD 106 (170)
Confidence 6666543
No 164
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=74.73 E-value=2.1 Score=30.70 Aligned_cols=37 Identities=5% Similarity=0.099 Sum_probs=31.1
Q ss_pred CCcEEEEeCchHH--HHHHHHHHHhcCCeEEEeccCCCH
Q psy13286 193 INQSIIFCNSTQR--VELLAKKITELGYCCYYIHARMAQ 229 (351)
Q Consensus 193 ~~~~lIf~~~~~~--~~~l~~~L~~~~~~~~~~~~~~~~ 229 (351)
..++++||.+-.. +..++..|+..|+.+..+.|++..
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 4678999988766 889999999999999899998643
No 165
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=74.64 E-value=12 Score=32.65 Aligned_cols=75 Identities=9% Similarity=0.138 Sum_probs=51.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-----C-CCCCCCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-----F-TRGIDVQA 261 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~-~~G~di~~ 261 (351)
.+.+++|.+++++-+...++.++.. +..+....|+..... ..+.+..+..+|+|+|.- + ...++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4578999999999999888888775 466777777766533 244555677899999952 1 22345566
Q ss_pred CCEEEEec
Q psy13286 262 VNVVINFD 269 (351)
Q Consensus 262 ~~~Vi~~~ 269 (351)
+++||.-.
T Consensus 184 ~~~vViDE 191 (414)
T 3eiq_A 184 IKMFVLDE 191 (414)
T ss_dssp CCEEEECS
T ss_pred CcEEEEEC
Confidence 67666433
No 166
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=73.34 E-value=3.2 Score=30.70 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=31.6
Q ss_pred CCcEEEEeCch--HHHHHHHHHHHhcCCeEEEeccCCCH
Q psy13286 193 INQSIIFCNST--QRVELLAKKITELGYCCYYIHARMAQ 229 (351)
Q Consensus 193 ~~~~lIf~~~~--~~~~~l~~~L~~~~~~~~~~~~~~~~ 229 (351)
..++++||.+- ..+...+..|+..|+++..+.|++..
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 46789999987 58889999999999999999998653
No 167
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=72.56 E-value=44 Score=30.24 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=49.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHH-hCCCcEEEEccHHHHHHHhccCcCCCCcc
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRI-YQKVHLIIATPGRILDLMDKQVANMDHCK 100 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 100 (351)
+..++++....-+.++.+.+ ...+.++..++|+.+..+.. ... ....+|+|+|+..+.. .+++..++
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L----~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~ 418 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLI----KNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLH 418 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHH----HTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEE
T ss_pred CCeEEEEecHHHHHHHHHHH----HHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCc
Confidence 45555566665554444444 44456889999987644322 222 3357899999877744 45788899
Q ss_pred EEEEcccc
Q psy13286 101 ILVLDEAD 108 (351)
Q Consensus 101 lvViDE~h 108 (351)
+||+....
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99998877
No 168
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=72.28 E-value=8.8 Score=24.99 Aligned_cols=36 Identities=14% Similarity=0.372 Sum_probs=29.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 228 (351)
+..++++||.+-..+...+..|+..|+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4578999999988899999999999885 5555 7654
No 169
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=71.68 E-value=4.5 Score=38.59 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=45.8
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHh-CCCcEEEEccHHHHHHHhccCcCCCCccEE
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIY-QKVHLIIATPGRILDLMDKQVANMDHCKIL 102 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lv 102 (351)
++++||++|++.-++++++.+++. ++++..++|... ...+.... ...+|+|+|.- +. ..+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR-~~v~~~F~~g~~~VLVaTdv-----~e-~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSY-DTEYPKCKNGDWDFVITTDI-----SE-MGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSH-HHHGGGGGTCCCSEEEECGG-----GG-TTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHH-HHHHHHHHCCCceEEEECch-----hh-cceeeC-CcEE
Confidence 478999999999998888776543 788999999532 22222222 35789999941 22 234566 7776
Q ss_pred E
Q psy13286 103 V 103 (351)
Q Consensus 103 V 103 (351)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 170
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=71.68 E-value=8.9 Score=37.35 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=47.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-----CCCC-C-CCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-----FTRG-I-DVQA 261 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~~G-~-di~~ 261 (351)
++++||.|+++.-+...++.+++. ++.+..++|+.+...+..... +..+|+|+|.- +..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999998888877765 889999999987654332221 35789999952 1222 2 4556
Q ss_pred CCEEEEec
Q psy13286 262 VNVVINFD 269 (351)
Q Consensus 262 ~~~Vi~~~ 269 (351)
+++||.-.
T Consensus 372 ~~~iViDE 379 (797)
T 4a2q_A 372 FTLMIFDE 379 (797)
T ss_dssp CSEEEETT
T ss_pred CCEEEEEC
Confidence 77777533
No 171
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=71.44 E-value=3.3 Score=28.68 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=32.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~ 229 (351)
+..++++||.+-..+...+..|+..|+. +..+.|++..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 3568999999988899999999999984 8889998654
No 172
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=71.11 E-value=7.7 Score=35.58 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=50.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-----CCCC-C-CCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-----FTRG-I-DVQA 261 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~~G-~-di~~ 261 (351)
+.++||.|++++-+...++.++.. +..+..++|+.+...+...+. +..+|+|+|.- +..+ + .+.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999888877777665 889999999986554322221 23689999962 2222 2 4556
Q ss_pred CCEEEEec
Q psy13286 262 VNVVINFD 269 (351)
Q Consensus 262 ~~~Vi~~~ 269 (351)
+++||.-.
T Consensus 128 ~~~vViDE 135 (555)
T 3tbk_A 128 FTLMIFDE 135 (555)
T ss_dssp CSEEEETT
T ss_pred CCEEEEEC
Confidence 77777543
No 173
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=71.00 E-value=9.8 Score=34.93 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=48.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-----CCCC-C-CCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-----FTRG-I-DVQA 261 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~~G-~-di~~ 261 (351)
+.++||.+++++-+...++.++.. ++.+..++|+.+...+...+. ...+|+|+|.- +..+ + .+.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999988888887765 889999999986654332221 23689999962 2222 3 5667
Q ss_pred CCEEEEecC
Q psy13286 262 VNVVINFDF 270 (351)
Q Consensus 262 ~~~Vi~~~~ 270 (351)
+++||.-..
T Consensus 131 ~~~vViDEa 139 (556)
T 4a2p_A 131 FTLMIFDEC 139 (556)
T ss_dssp CSEEEEETG
T ss_pred CCEEEEECC
Confidence 787776443
No 174
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=70.77 E-value=9.3 Score=30.77 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=48.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-----C---CCCCCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-----F---TRGIDVQ 260 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~---~~G~di~ 260 (351)
+.++||.+++++-+...++.++.. +..+..++++..... .......+..+|+|+|.- + ..++++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 457999999999999999988775 556666665432211 111223466799999952 1 1246778
Q ss_pred CCCEEEEec
Q psy13286 261 AVNVVINFD 269 (351)
Q Consensus 261 ~~~~Vi~~~ 269 (351)
++.++|.-.
T Consensus 175 ~~~~lViDE 183 (245)
T 3dkp_A 175 SVEWLVVDE 183 (245)
T ss_dssp TCCEEEESS
T ss_pred cCcEEEEeC
Confidence 888777544
No 175
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=70.56 E-value=5.7 Score=27.60 Aligned_cols=38 Identities=26% Similarity=0.510 Sum_probs=32.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCC
Q psy13286 191 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 228 (351)
Q Consensus 191 ~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 228 (351)
.+..++++||.+-..+...+..|+..|+....+.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 34578999999988899999999999986678888865
No 176
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=70.18 E-value=3.5 Score=30.16 Aligned_cols=38 Identities=24% Similarity=0.543 Sum_probs=32.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCC-eEEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~ 229 (351)
+..++++||.+-..+...+..|+..|+ ++..+.|++..
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 457899999998888899999999998 58899998643
No 177
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=69.83 E-value=4.7 Score=29.84 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=30.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCC-eEEEeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 228 (351)
+..++++||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456899999987788899999999998 5889999874
No 178
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=69.57 E-value=21 Score=28.25 Aligned_cols=72 Identities=10% Similarity=0.094 Sum_probs=37.2
Q ss_pred HHHHHHHhhCCceEEEEECCcchHHH-----H-HHH-hCCCcEEEEccHHHHHHHhccCcCCCCccEEEEcccccccCc
Q psy13286 42 QICIELAKHLNVKVMVTTGGTNLRDD-----I-MRI-YQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQ 113 (351)
Q Consensus 42 ~~~~~~~~~~~~~v~~~~~~~~~~~~-----~-~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~~~ 113 (351)
..++.+........+.++|.....+. + ... ..+..++..+...+...+......+...+++|+||+|.+...
T Consensus 41 ~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~~~~~ 119 (242)
T 3bos_A 41 GALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAGH 119 (242)
T ss_dssp HHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGTTGGGSSEEEEETGGGGTTC
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHHhccCCCEEEEeccccccCC
Confidence 44444444434566677776543221 1 111 124556666655543322221112345689999999987654
No 179
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=69.44 E-value=3.8 Score=29.55 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=32.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~ 229 (351)
+..++++||.+-..+...+..|+..|+. +..+.|++..
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 3568999999988899999999999885 8889998753
No 180
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=69.32 E-value=4.3 Score=29.59 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=32.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~ 229 (351)
+..++++||.+-..+..++..|+..|+. +..+.|++..
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 123 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGA 123 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 3568999999988888999999999985 8999998653
No 181
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=69.18 E-value=5.6 Score=35.77 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=46.1
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHh-CCCcEEEEccHHHHHHHhccCcCCCCccEE
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIY-QKVHLIIATPGRILDLMDKQVANMDHCKIL 102 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lv 102 (351)
++++||.+|++.-++++++.+++ .++++..+++.... ....... ...+|+|+|. .+ ...+++.. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~----~g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT~-----v~-~~GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRK----SGKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTD-----IS-EMGANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHT----TTCCEEEECTTTHH-HHGGGGGSSCCSEEEECG-----GG-GSSCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHH----cCCeEEECCHHHHH-HHHHhhccCCceEEEECC-----HH-HhCcCCCC-CEE
Confidence 35899999999999888877754 37888888887653 2222222 3688999994 22 22445666 666
Q ss_pred E
Q psy13286 103 V 103 (351)
Q Consensus 103 V 103 (351)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 182
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=68.75 E-value=25 Score=31.33 Aligned_cols=54 Identities=13% Similarity=0.264 Sum_probs=36.2
Q ss_pred CCccEEEEccccccc---CcchHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHh
Q psy13286 97 DHCKILVLDEADKLL---SQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKH 150 (351)
Q Consensus 97 ~~~~lvViDE~h~~~---~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~ 150 (351)
..++++|+|++-+.. +..+...+..+.....+..-+++++|+........+..+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 578999999998654 334556666666666566667788888765554444443
No 183
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=68.56 E-value=31 Score=27.35 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=11.7
Q ss_pred CccEEEEccccccc
Q psy13286 98 HCKILVLDEADKLL 111 (351)
Q Consensus 98 ~~~lvViDE~h~~~ 111 (351)
.+++|+|||++-+.
T Consensus 101 ~~dvViIDEaQF~~ 114 (214)
T 2j9r_A 101 EMDVIAIDEVQFFD 114 (214)
T ss_dssp SCCEEEECCGGGSC
T ss_pred CCCEEEEECcccCC
Confidence 58999999999643
No 184
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=68.21 E-value=19 Score=34.94 Aligned_cols=75 Identities=11% Similarity=0.019 Sum_probs=52.3
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHh-------hCCceEEEEECCcchHHHHHHHh---------CCCcEEEEccHHHHH
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAK-------HLNVKVMVTTGGTNLRDDIMRIY---------QKVHLIIATPGRILD 87 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~---------~~~~Ilv~Tp~~l~~ 87 (351)
++.+||.+|++.-+.+.++.+++... ..++.+..++|+.+..+...... ....|+|+|. +..
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~--iae 380 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN--IAE 380 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT--HHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc--HHH
Confidence 47999999999999999998876432 24788999999987655433322 2357999995 222
Q ss_pred HHhccCcCCCCccEEEE
Q psy13286 88 LMDKQVANMDHCKILVL 104 (351)
Q Consensus 88 ~l~~~~~~~~~~~lvVi 104 (351)
..+++..+++||-
T Consensus 381 ----~GidIp~v~~VId 393 (773)
T 2xau_A 381 ----TSLTIDGIVYVVD 393 (773)
T ss_dssp ----HTCCCTTEEEEEE
T ss_pred ----hCcCcCCeEEEEe
Confidence 1446777776653
No 185
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=67.95 E-value=23 Score=33.10 Aligned_cols=74 Identities=8% Similarity=0.108 Sum_probs=44.8
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCC--ce--EEEEECCcchHHHHHHHhCCCcEEEEc--cHHHHHHHhccCcCCC
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLN--VK--VMVTTGGTNLRDDIMRIYQKVHLIIAT--PGRILDLMDKQVANMD 97 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~--v~~~~~~~~~~~~~~~~~~~~~Ilv~T--p~~l~~~l~~~~~~~~ 97 (351)
+..++++.|+...+.++.+.++.+....+ ++ .... .... + .+.++..|.+.+ |..+. -.
T Consensus 208 ~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~~~~~~-~~~~----i-~~~nGs~i~~~s~~~~~lr---------G~ 272 (592)
T 3cpe_A 208 DKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEW-NKGS----I-ELDNGSSIGAYASSPDAVR---------GN 272 (592)
T ss_dssp SCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTSCCEEEE-CSSE----E-EETTSCEEEEEECCHHHHH---------HS
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHHhChHhhccccccC-CccE----E-EecCCCEEEEEeCCCCCcc---------CC
Confidence 35899999999999999998988887654 11 1111 1110 0 112345554433 33331 12
Q ss_pred CccEEEEcccccccC
Q psy13286 98 HCKILVLDEADKLLS 112 (351)
Q Consensus 98 ~~~lvViDE~h~~~~ 112 (351)
+.+++|+||+|...+
T Consensus 273 ~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 273 SFAMIYIEDCAFIPN 287 (592)
T ss_dssp CCSEEEEETGGGCTT
T ss_pred CcceEEEehhccCCc
Confidence 468999999997654
No 186
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=67.24 E-value=5.4 Score=29.30 Aligned_cols=36 Identities=6% Similarity=0.154 Sum_probs=30.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 228 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 228 (351)
..++++||.+-..+...+..|+..|+. +..+.|++.
T Consensus 56 ~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 56 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 467899999988899999999999985 888888864
No 187
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=65.87 E-value=10 Score=35.71 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=45.9
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHH-hCCCcEEEEccHHHHHHHhccCcCCCCccEE
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRI-YQKVHLIIATPGRILDLMDKQVANMDHCKIL 102 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lv 102 (351)
++++||.++++.-+.++++.+++. +.++..++|.... ..+... ....+|+|+|. .+.. .+++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~-~~l~~F~~g~~~VLVaTd-----v~~r-GiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTD-----ISEM-GANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHH-HHTTHHHHSCCSEEEECG-----GGGT-TCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHH-HHHHhhcCCCcEEEEECc-----HHHc-CcccC-ceEE
Confidence 368999999999998888877654 7888899986432 222222 34688999995 2222 34554 6666
Q ss_pred E
Q psy13286 103 V 103 (351)
Q Consensus 103 V 103 (351)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 3
No 188
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=65.27 E-value=42 Score=25.35 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=50.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCCCCCCCEEEEecCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFP 271 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~di~~~~~Vi~~~~p 271 (351)
.+.+.|.|++..++..+.+.|...|+.+..+.++... -...|.|+|-....|+.+ ++|+.+++.
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~------------~~~~v~v~t~~~~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQR------------LAPGVIVVPSFLAKGLEF---DAVIVWNAN 124 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-C------------CCSSEEEEEGGGCTTCCE---EEEEEETCB
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccc------------cCCCeEEEEccccCCcCC---CEEEEecCC
Confidence 5678899999999999999999999888777664321 234789999999999886 577777754
No 189
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=64.44 E-value=6 Score=28.79 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=31.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 228 (351)
+..++++||.+-..+...+..|+..|+. +..+.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3567999999988899999999999985 888899864
No 190
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=63.90 E-value=5.7 Score=35.85 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=44.1
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHH-hCCCcEEEEccHHHHHHHhccCcCCCCccEE
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRI-YQKVHLIIATPGRILDLMDKQVANMDHCKIL 102 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lv 102 (351)
++++||.+|++.-+.++++.+++. ++++..+++..... ..... ....+|+|+|-- + ...+++.. ++|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~-~~~~f~~g~~~iLVaT~v-~-----~~GiDip~-~~V 257 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDT-EYPKCKNGDWDFVITTDI-S-----EMGANFGA-SRV 257 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCC-CGGGSSSCCCSEEEESSC-C--------CCCSC-SEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHH-HHhhccCCCceEEEECCh-H-----HhCeecCC-CEE
Confidence 368999999999998888877654 78888888864321 11222 235789999941 1 11335556 655
Q ss_pred E
Q psy13286 103 V 103 (351)
Q Consensus 103 V 103 (351)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 5
No 191
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=62.88 E-value=6.8 Score=28.35 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=31.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCC-eEEEeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 228 (351)
+..++++||.+=..+...+..|+..|+ ++..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 356899999988888889999999998 5888999874
No 192
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=61.84 E-value=18 Score=25.30 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=31.2
Q ss_pred ceEEEEcCCHHHHHH-HHHHHHHHHhhCCceEEE-EECCcchHHHHHHHhCCCcEEEEccHH
Q psy13286 25 KATLIIVPTRELALQ-TSQICIELAKHLNVKVMV-TTGGTNLRDDIMRIYQKVHLIIATPGR 84 (351)
Q Consensus 25 ~~~lil~P~~~L~~q-~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~Ilv~Tp~~ 84 (351)
.+++++|++=-=..+ ....+++.++..++.+.. ..+-..... ...+.|++|+||+-
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~----~~~~~DlIist~~l 79 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET----YMDGVHLICTTARV 79 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT----STTSCSEEEESSCC
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh----ccCCCCEEEECCcc
Confidence 689999995333223 245555556665665322 222222211 12468999999853
No 193
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=61.05 E-value=49 Score=29.56 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=33.1
Q ss_pred CCccEEEEcccccccCc-chHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHh
Q psy13286 97 DHCKILVLDEADKLLSQ-DFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKH 150 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~ 150 (351)
..++++|||.+-+.... .....+..+.....+..-++++.|+........+..+
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f 235 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAF 235 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHH
Confidence 35789999998755432 2334455555555555567788888765555554444
No 194
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=60.92 E-value=70 Score=26.42 Aligned_cols=40 Identities=3% Similarity=0.082 Sum_probs=31.8
Q ss_pred cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCC
Q psy13286 179 QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY 218 (351)
Q Consensus 179 ~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~ 218 (351)
.-...+..+++..++.+..|||.+...|..+.+.|++.|+
T Consensus 173 ~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~G~ 212 (313)
T 3m9w_A 173 NALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGL 212 (313)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEESSHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHHHcCC
Confidence 3456677788776456788999999999999999988775
No 195
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=60.51 E-value=29 Score=29.16 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=24.5
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
...+++++||+|.+........+..++...+...++++.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999998762333444555555544455555533
No 196
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=59.40 E-value=11 Score=35.73 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=47.4
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhccCcCCCCccEE
Q psy13286 23 TSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKIL 102 (351)
Q Consensus 23 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lv 102 (351)
.++++||.++++.-++++++.+++ .++++..++|+.+..+. ...+.+|+|+|. + +.. .+++. +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~----~g~~v~~lHG~l~q~er---~~~~~~VLVATd--V---aer-GIDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSG----LGINAVAYYRGLDVSVI---PTIGDVVVVATD--A---LMT-GYTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECTTSCGGGS---CSSSCEEEEECT--T---HHH-HCCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHh----CCCcEEEecCCCCHHHH---HhCCCcEEEECC--h---HHc-cCCCC-CcEE
Confidence 347999999999999888877754 47899999999875432 234568999995 2 222 23454 7776
Q ss_pred E
Q psy13286 103 V 103 (351)
Q Consensus 103 V 103 (351)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 197
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=59.28 E-value=23 Score=29.74 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=50.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc------CCCCCCCCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL------FTRGIDVQAV 262 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~------~~~G~di~~~ 262 (351)
+.+++|.+++++-+...++.+++. +..+..++|+.+....... +. ..+|+|+|.. ....+++.++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 568999999999999999888764 4678889998887554332 22 3789999952 1123455666
Q ss_pred CEEEEec
Q psy13286 263 NVVINFD 269 (351)
Q Consensus 263 ~~Vi~~~ 269 (351)
++||.-.
T Consensus 131 ~~iViDE 137 (337)
T 2z0m_A 131 EIVIIDE 137 (337)
T ss_dssp SEEEEES
T ss_pred cEEEEEC
Confidence 7666533
No 198
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=58.68 E-value=30 Score=27.72 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=43.6
Q ss_pred cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 179 QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 179 ~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
.|......++... +.+++|+++++.-+....+.+++.+.. +..++|+.. ...+|+|+|.
T Consensus 120 GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 120 GKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp THHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 4555444444444 578999999999999999999887877 888888654 2457888884
No 199
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=57.27 E-value=12 Score=33.88 Aligned_cols=77 Identities=9% Similarity=0.141 Sum_probs=44.7
Q ss_pred cCCcchhhhcccCcCCCCCceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCc-------ch-----HH---HHHH
Q psy13286 6 QEPTQFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGT-------NL-----RD---DIMR 70 (351)
Q Consensus 6 tgs~~l~~l~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~-------~~-----~~---~~~~ 70 (351)
|||+.-.+++.+..... ..+|||+|+...+.|+++.++.+... .|..+-.-. .. .. .+..
T Consensus 23 ~gs~ka~~~a~l~~~~~--~p~lvv~~~~~~A~~l~~~l~~~~~~---~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~ 97 (483)
T 3hjh_A 23 TGAACATLVAEIAERHA--GPVVLIAPDMQNALRLHDEISQFTDQ---MVMNLADWETLPYDSFSPHQDIISSRLSTLYQ 97 (483)
T ss_dssp CTTHHHHHHHHHHHHSS--SCEEEEESSHHHHHHHHHHHHHTCSS---CEEECCCCCSCTTCSSCCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhC--CCEEEEeCCHHHHHHHHHHHHhhCCC---cEEEEeCcccccccccCCChHHHHHHHHHHHH
Confidence 55553333344333322 47899999999999999999887542 233333210 00 11 1122
Q ss_pred Hh-CCCcEEEEccHHHHH
Q psy13286 71 IY-QKVHLIIATPGRILD 87 (351)
Q Consensus 71 ~~-~~~~Ilv~Tp~~l~~ 87 (351)
+. ....|+|+|...+..
T Consensus 98 L~~~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 98 LPTMQRGVLIVPVNTLMQ 115 (483)
T ss_dssp GGGCCSSEEEEEHHHHHB
T ss_pred HHhCCCCEEEEEHHHHhh
Confidence 22 346699999888853
No 200
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=57.03 E-value=29 Score=24.05 Aligned_cols=58 Identities=9% Similarity=0.024 Sum_probs=35.3
Q ss_pred ceEEEEcCCHHHHHHHHH-HHHHHHhhCCce-EEEEECCcchHHHHHHHhCCCcEEEEccHHH
Q psy13286 25 KATLIIVPTRELALQTSQ-ICIELAKHLNVK-VMVTTGGTNLRDDIMRIYQKVHLIIATPGRI 85 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~-~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l 85 (351)
.+++++|++=-=...+.. .+++.++..++. +.......... .....+.|++++||+--
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~---~~~~~~~DlIi~t~~l~ 78 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEA---KGLASNYDIVVASNHLI 78 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHH---HHHGGGCSEEEEETTTG
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHH---hhccCCCcEEEECCchH
Confidence 689999997554445555 677777777766 43322222211 12235689999998653
No 201
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=55.59 E-value=47 Score=22.75 Aligned_cols=48 Identities=6% Similarity=0.037 Sum_probs=34.5
Q ss_pred CCCCcEEEEeC------chHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHH
Q psy13286 191 LQINQSIIFCN------STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHD 238 (351)
Q Consensus 191 ~~~~~~lIf~~------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 238 (351)
....+++||.. ....|.++.+.|...++....+.=......+..+.+.
T Consensus 15 i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~ 68 (109)
T 3ipz_A 15 VNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEY 68 (109)
T ss_dssp HTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred HccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 34467999998 4889999999999998876666544455555555443
No 202
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=53.46 E-value=18 Score=29.83 Aligned_cols=46 Identities=20% Similarity=0.388 Sum_probs=36.7
Q ss_pred HHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCC-eEEEeccCCCH
Q psy13286 184 LNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMAQ 229 (351)
Q Consensus 184 l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~ 229 (351)
+...+...++.++++||.+-..+...+..|+..|+ ++..+.|++..
T Consensus 172 l~~~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~a 218 (265)
T 4f67_A 172 VQRNLIDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILN 218 (265)
T ss_dssp HHHHTGGGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred HHHhhhhCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 33344445678899999998899999999999998 68889998754
No 203
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=53.37 E-value=8.9 Score=30.11 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=21.9
Q ss_pred ccEEEEcccccccCcc--hH---HHHHHHHHhCCCCCcEEEEEee
Q psy13286 99 CKILVLDEADKLLSQD--FK---GMLDHVISILPHERQILLYSAT 138 (351)
Q Consensus 99 ~~lvViDE~h~~~~~~--~~---~~~~~~~~~~~~~~~~i~~SaT 138 (351)
-.+|||||||.+.... .. ..+..+........+++++|..
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 4699999999884321 11 2222222222334567766665
No 204
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=53.15 E-value=10 Score=28.28 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=30.3
Q ss_pred CCcEEEEeCch---------HHHHHHHHHHHhcCCeEEEeccCCC
Q psy13286 193 INQSIIFCNST---------QRVELLAKKITELGYCCYYIHARMA 228 (351)
Q Consensus 193 ~~~~lIf~~~~---------~~~~~l~~~L~~~~~~~~~~~~~~~ 228 (351)
..++++||.+- ..+..++..|...|+.+..+.|++.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~ 137 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 137 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHH
Confidence 46899999876 4588899999999999999999854
No 205
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=52.15 E-value=14 Score=26.06 Aligned_cols=35 Identities=9% Similarity=0.119 Sum_probs=29.2
Q ss_pred cEEEEeCchHHHHHHHHHHHhc-------CCeEEEeccCCCH
Q psy13286 195 QSIIFCNSTQRVELLAKKITEL-------GYCCYYIHARMAQ 229 (351)
Q Consensus 195 ~~lIf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~ 229 (351)
++++||.+-..+...+..|... ..++..+.|++..
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~ 115 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMA 115 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHH
Confidence 8999999888888899999888 3478889998754
No 206
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=51.45 E-value=38 Score=31.46 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=50.7
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhh----CCceEEEEECCcch-HHH-HHHHhCC---Cc-EEEEccHHHHHHHhcc
Q psy13286 23 TSKATLIIVPTRELALQTSQICIELAKH----LNVKVMVTTGGTNL-RDD-IMRIYQK---VH-LIIATPGRILDLMDKQ 92 (351)
Q Consensus 23 ~~~~~lil~P~~~L~~q~~~~~~~~~~~----~~~~v~~~~~~~~~-~~~-~~~~~~~---~~-Ilv~Tp~~l~~~l~~~ 92 (351)
.++++||+|+++.-+..+++.+++.... .+-.+..++|..+. +.. +....++ .. |+|+| +.+ ..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-~~l-----~~ 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-QLL-----TT 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-STT-----TT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-Chh-----hc
Confidence 3479999999999999999998877532 22336667777654 222 2333331 33 55554 333 22
Q ss_pred CcCCCCccEEEEcccc
Q psy13286 93 VANMDHCKILVLDEAD 108 (351)
Q Consensus 93 ~~~~~~~~lvViDE~h 108 (351)
.+++..+++||++..-
T Consensus 512 GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 512 GVDAPTCKNVVLARVV 527 (590)
T ss_dssp TCCCTTEEEEEEESCC
T ss_pred CccchheeEEEEEecC
Confidence 4577889999987653
No 207
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.46 E-value=15 Score=31.48 Aligned_cols=42 Identities=14% Similarity=0.379 Sum_probs=27.3
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeC
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATF 139 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 139 (351)
.+..++|+||+|. ++......+..++...+....+++.|..+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 3567999999998 45544555666666666665555555443
No 208
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=50.33 E-value=29 Score=32.92 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=50.2
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-----CCCC-C-CCCCC
Q psy13286 194 NQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-----FTRG-I-DVQAV 262 (351)
Q Consensus 194 ~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~~G-~-di~~~ 262 (351)
+++||.++++.-+...++.+++. ++.+..++|+.+...+...+ . ...+|+|+|.- +..+ + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---V-ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---H-HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---c-cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 78999999999888888888765 78899999988643322221 1 24799999962 2222 2 56667
Q ss_pred CEEEEecC
Q psy13286 263 NVVINFDF 270 (351)
Q Consensus 263 ~~Vi~~~~ 270 (351)
++||.-..
T Consensus 138 ~~vViDEa 145 (696)
T 2ykg_A 138 TLMIFDEC 145 (696)
T ss_dssp SEEEEETG
T ss_pred cEEEEeCC
Confidence 77776443
No 209
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=50.20 E-value=6.5 Score=29.16 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=22.5
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCC-CCCcEEEEEee
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILP-HERQILLYSAT 138 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT 138 (351)
.+.+++|+||.+.+.... ...+..++..+. .....+++|+.
T Consensus 82 ~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~ 123 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSE 123 (149)
T ss_dssp GGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEES
T ss_pred hCCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECC
Confidence 456899999999755443 344444433322 22332445555
No 210
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=49.85 E-value=95 Score=24.63 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=22.5
Q ss_pred EEEEccHHHHHHHhccCcCCCCccEEEEccccccc
Q psy13286 77 LIIATPGRILDLMDKQVANMDHCKILVLDEADKLL 111 (351)
Q Consensus 77 Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~ 111 (351)
+-+.+.+.+...+..... -.++++|||||++.+.
T Consensus 69 ~~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 69 VEVESAPEILNYIMSNSF-NDETKVIGIDEVQFFD 102 (223)
T ss_dssp EEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGSC
T ss_pred cccCCHHHHHHHHHHHhh-CCCCCEEEEecCccCc
Confidence 445666677666654322 2457999999999643
No 211
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=49.83 E-value=18 Score=35.96 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=46.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc-----CCCC-C-CCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL-----FTRG-I-DVQA 261 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~~G-~-di~~ 261 (351)
++++||.++++.-+...++.+++. ++.+..++|+.+...+...+. +..+|+|+|.- +..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 678999999999888887777765 889999999986554322221 23689999952 1222 2 4556
Q ss_pred CCEEEEec
Q psy13286 262 VNVVINFD 269 (351)
Q Consensus 262 ~~~Vi~~~ 269 (351)
+++||.-.
T Consensus 372 ~~liViDE 379 (936)
T 4a2w_A 372 FTLMIFDE 379 (936)
T ss_dssp CSEEEEET
T ss_pred CCEEEEEC
Confidence 77777544
No 212
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=48.96 E-value=25 Score=26.99 Aligned_cols=26 Identities=8% Similarity=0.249 Sum_probs=17.6
Q ss_pred CccEEEEcccccccCcchHHHHHHHHH
Q psy13286 98 HCKILVLDEADKLLSQDFKGMLDHVIS 124 (351)
Q Consensus 98 ~~~lvViDE~h~~~~~~~~~~~~~~~~ 124 (351)
..++|++||+|.+ +.++...+..+..
T Consensus 76 ~~dvviIDE~Q~~-~~~~~~~l~~l~~ 101 (184)
T 2orw_A 76 DTRGVFIDEVQFF-NPSLFEVVKDLLD 101 (184)
T ss_dssp TEEEEEECCGGGS-CTTHHHHHHHHHH
T ss_pred CCCEEEEECcccC-CHHHHHHHHHHHH
Confidence 5789999999975 3335555554544
No 213
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=48.93 E-value=62 Score=22.29 Aligned_cols=47 Identities=4% Similarity=-0.018 Sum_probs=34.1
Q ss_pred CCCcEEEEeC------chHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHH
Q psy13286 192 QINQSIIFCN------STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHD 238 (351)
Q Consensus 192 ~~~~~lIf~~------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 238 (351)
...+++||.. ....|.++.+.|...++....+.=......+..+.+.
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~ 66 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAY 66 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHH
Confidence 4567999994 6788999999999998877666555556555555443
No 214
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=48.75 E-value=1.2e+02 Score=25.48 Aligned_cols=181 Identities=10% Similarity=0.185 Sum_probs=94.4
Q ss_pred ceEEEEcCCH---HHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHH-h--CCCcEEEEccH--HHHHHHhccC
Q psy13286 25 KATLIIVPTR---ELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRI-Y--QKVHLIIATPG--RILDLMDKQV 93 (351)
Q Consensus 25 ~~~lil~P~~---~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~-~--~~~~Ilv~Tp~--~l~~~l~~~~ 93 (351)
+++.+++|.. .--.++..-+++.++..|+.+...........+. ..+ . .+++-+|.+|. .....+..
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~-- 81 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRL-- 81 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHH--
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHH--
Confidence 5777888864 4556677777777777898888877666544332 222 2 36776555552 22222221
Q ss_pred cCCCCccEEEEcccc--------------------cccCcc---hHHHHHHHHHhC----CCC-CcEEEEEeeCcchH--
Q psy13286 94 ANMDHCKILVLDEAD--------------------KLLSQD---FKGMLDHVISIL----PHE-RQILLYSATFPLTV-- 143 (351)
Q Consensus 94 ~~~~~~~lvViDE~h--------------------~~~~~~---~~~~~~~~~~~~----~~~-~~~i~~SaT~~~~~-- 143 (351)
..-..+-+|.+|-.. .+...+ -......+.... ... .++++++.......
T Consensus 82 ~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~ 161 (350)
T 3h75_A 82 SQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQ 161 (350)
T ss_dssp HTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHH
T ss_pred HHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHH
Confidence 011234455555321 111111 112233444443 113 56777776643221
Q ss_pred ---HHHHHHhcCCCeEEeeccccccCCceEEEEEc--CcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCC
Q psy13286 144 ---KNFMEKHLKDPYEINLMEELTLKGVTQYYAFV--QERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY 218 (351)
Q Consensus 144 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~ 218 (351)
..+....-..+. .. . ...... ....-...+..++...+ ....|||.+...+.-+.+.|+..|.
T Consensus 162 ~R~~Gf~~~l~~~~~-~~---------~-~~~~~~~~~~~~~~~~~~~~L~~~~-~~~aI~~~~d~~a~g~~~al~~~G~ 229 (350)
T 3h75_A 162 LRERGLRRALAEHPQ-VH---------L-RQLVYGEWNRERAYRQAQQLLKRYP-KTQLVWSANDEMALGAMQAARELGR 229 (350)
T ss_dssp HHHHHHHHHHHHCTT-EE---------E-EEEEECTTCHHHHHHHHHHHHHHCT-TEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCC-eE---------E-EEEeeCCCcHHHHHHHHHHHHHhCC-CcCEEEECChHHHHHHHHHHHHcCC
Confidence 111111111111 00 0 011111 12234566777777764 5788999999999999999998876
Q ss_pred e
Q psy13286 219 C 219 (351)
Q Consensus 219 ~ 219 (351)
.
T Consensus 230 ~ 230 (350)
T 3h75_A 230 K 230 (350)
T ss_dssp C
T ss_pred C
Confidence 5
No 215
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=48.66 E-value=1.5e+02 Score=26.69 Aligned_cols=112 Identities=5% Similarity=-0.006 Sum_probs=70.1
Q ss_pred eEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc-CCeEEEecc-------CC-C----HHHHHHH
Q psy13286 169 TQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL-GYCCYYIHA-------RM-A----QAHRNRV 235 (351)
Q Consensus 169 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~-~~~~~~~~~-------~~-~----~~~r~~~ 235 (351)
.+...-+....|.-.+..+.... ++++||.|++...|..++..|+.. +..+..+-. .. + ...|.++
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~~-~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~ 94 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAERH-AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLST 94 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHS-SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHHh-CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHH
Confidence 44555566667777777777665 468999999999999999999875 333433322 11 1 2467788
Q ss_pred HHHhhcCCccEEEEeCcCCCCCCCC-----CCCEEEEecCCCChhhHhhhc
Q psy13286 236 FHDFRSGLCRNLVCSDLFTRGIDVQ-----AVNVVINFDFPKMAETYLHRI 281 (351)
Q Consensus 236 ~~~f~~g~~~ilv~T~~~~~G~di~-----~~~~Vi~~~~p~s~~~~~q~~ 281 (351)
+..+.+++..|+|+|-....+.=.| .....+..+...+.+.+.+++
T Consensus 95 l~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L 145 (483)
T 3hjh_A 95 LYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 (483)
T ss_dssp HHHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHH
Confidence 8888888888888884322222222 123445555555555554443
No 216
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=48.39 E-value=30 Score=26.79 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=34.7
Q ss_pred CCCcEEEEeCchHHHHH-HHHHHHhc---CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 192 QINQSIIFCNSTQRVEL-LAKKITEL---GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~-l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
.+.+++|.|+++..+.. +.+.++.. +..+..++|+.....+..... +..+|+|+|.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 35789999999988776 55555543 677888888754332211111 2468899985
No 217
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=48.06 E-value=71 Score=30.37 Aligned_cols=73 Identities=11% Similarity=0.073 Sum_probs=50.7
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchH---HHHHHHh---CCCcEEEEccHHHHHHHhccCcCCCCcc
Q psy13286 27 TLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLR---DDIMRIY---QKVHLIIATPGRILDLMDKQVANMDHCK 100 (351)
Q Consensus 27 ~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~---~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 100 (351)
.+++++++.-+.++++.+++ .+..+..++|+.+.. ....... ...+|+|+|- .+ ...+++ .++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~----~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~-e~GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEI----RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AI-GMGLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GG-GSSCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHh----cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HH-HCCcCc-Ccc
Confidence 35668888887777776655 378899999998765 3333343 3478999996 22 334567 899
Q ss_pred EEEEcccccc
Q psy13286 101 ILVLDEADKL 110 (351)
Q Consensus 101 lvViDE~h~~ 110 (351)
+||.-.....
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9998877653
No 218
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=48.00 E-value=30 Score=28.58 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=35.7
Q ss_pred HHHHHHHhh---CCCCcEEEEeCchHHHHHHHHHHH-hcCC-eEEEeccCCC
Q psy13286 182 HCLNTLFSK---LQINQSIIFCNSTQRVELLAKKIT-ELGY-CCYYIHARMA 228 (351)
Q Consensus 182 ~~l~~~l~~---~~~~~~lIf~~~~~~~~~l~~~L~-~~~~-~~~~~~~~~~ 228 (351)
+.+...+.. .+..++++||.+-..+...+..|+ ..|+ ++..+.|++.
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 270 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWT 270 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHH
Confidence 344444544 345678999999888889999998 8898 6889999864
No 219
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=47.01 E-value=34 Score=30.64 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=44.0
Q ss_pred cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 179 QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 179 ~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
.|.......+... +.++||.|+++.-+...++.++..+.. +..++|+... ..+|+|+|.
T Consensus 120 GKT~~~l~~i~~~-~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~ 179 (472)
T 2fwr_A 120 GKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (472)
T ss_dssp CHHHHHHHHHHHH-CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEH
T ss_pred CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEc
Confidence 4544443333333 578999999999999999999888888 9999998652 357888874
No 220
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=46.19 E-value=42 Score=25.79 Aligned_cols=40 Identities=25% Similarity=0.387 Sum_probs=24.6
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEe
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSA 137 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 137 (351)
..-.++|+||+|.+... ....+..++...+....+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45679999999976543 23445555555555555554443
No 221
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=46.16 E-value=19 Score=28.77 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=32.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 229 (351)
+..++++||.+-..+...+..|+..|.++..+.|++..
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~~ 220 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMHE 220 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHHH
Confidence 45789999999999999999999999778889998653
No 222
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=45.83 E-value=9.6 Score=36.32 Aligned_cols=75 Identities=24% Similarity=0.329 Sum_probs=46.7
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHH--HhhCCceEEEEECC--------cchHHHH---HHHhC-CCcEEEEccHHHHHHH
Q psy13286 24 SKATLIIVPTRELALQTSQICIEL--AKHLNVKVMVTTGG--------TNLRDDI---MRIYQ-KVHLIIATPGRILDLM 89 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~--~~~~~~~v~~~~~~--------~~~~~~~---~~~~~-~~~Ilv~Tp~~l~~~l 89 (351)
+.++||.++++..+..+.+.+++. ....++++..++|+ .+..+.. ....+ ..+|+|+|- .
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------c
Confidence 479999999999998888887653 22236888889988 5443332 22222 578999995 2
Q ss_pred hccCcCCCCccEEEE
Q psy13286 90 DKQVANMDHCKILVL 104 (351)
Q Consensus 90 ~~~~~~~~~~~lvVi 104 (351)
-...+++..+++||.
T Consensus 474 ~~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 474 AEEGLDIKECNIVIR 488 (699)
T ss_dssp CCTTSCCCSCCCCEE
T ss_pred cccCCccccCCEEEE
Confidence 233457788888773
No 223
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=43.96 E-value=30 Score=29.36 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=23.2
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCc
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFP 140 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 140 (351)
...-++++||+|.+...+.--.+..+...-..+.-+++.++|+.
T Consensus 131 ~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 34568999999998833211111122111222344566677653
No 224
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=43.94 E-value=1.2e+02 Score=24.68 Aligned_cols=59 Identities=7% Similarity=0.030 Sum_probs=42.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHH-HHHHHHHHhhc--CCccEEEEeC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQA-HRNRVFHDFRS--GLCRNLVCSD 251 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~r~~~~~~f~~--g~~~ilv~T~ 251 (351)
+.++++.-.+.+.++.+++.++..+..+..+..+.+.. +-++..+...+ |.+++||..-
T Consensus 31 Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 31 DSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 45677777788889999999999888888888887643 33333333222 8999999764
No 225
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=43.80 E-value=21 Score=29.50 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=32.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCC-eEEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~ 229 (351)
+..++++||.+-..+...+..|...|+ ++..+.|++..
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 457899999988888899999999998 58899999864
No 226
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=42.92 E-value=74 Score=21.36 Aligned_cols=48 Identities=6% Similarity=-0.026 Sum_probs=34.0
Q ss_pred CCcEEEEeC------chHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhh
Q psy13286 193 INQSIIFCN------STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFR 240 (351)
Q Consensus 193 ~~~~lIf~~------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 240 (351)
..+++||.. ....|..+...|...++....+.-......+..+.+.+.
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g 69 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSN 69 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHT
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHC
Confidence 356888884 567888999999998887766666556665555555443
No 227
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=42.08 E-value=25 Score=29.04 Aligned_cols=37 Identities=11% Similarity=0.031 Sum_probs=29.6
Q ss_pred CCCcEEEEeCchHH-HHHHHHHHHhcCC-eEEEeccCCC
Q psy13286 192 QINQSIIFCNSTQR-VELLAKKITELGY-CCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~-~~~l~~~L~~~~~-~~~~~~~~~~ 228 (351)
+..+++|||.+-.. +..++..|+..|+ ++..+.|++.
T Consensus 85 ~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~ 123 (280)
T 1urh_A 85 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLA 123 (280)
T ss_dssp TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 45778999987555 8899999999998 5888888654
No 228
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=42.05 E-value=39 Score=28.59 Aligned_cols=46 Identities=9% Similarity=0.110 Sum_probs=33.7
Q ss_pred HHHHHHhh---CCCCcEEEEeCchH-HHHHHHHHHHhcCC-eEEEeccCCC
Q psy13286 183 CLNTLFSK---LQINQSIIFCNSTQ-RVELLAKKITELGY-CCYYIHARMA 228 (351)
Q Consensus 183 ~l~~~l~~---~~~~~~lIf~~~~~-~~~~l~~~L~~~~~-~~~~~~~~~~ 228 (351)
.+...+.. .+..+++|||.+-. .+.+++..|+..|+ ++..+.|++.
T Consensus 98 ~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~ 148 (318)
T 3hzu_A 98 QFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGRD 148 (318)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCHH
Confidence 34444444 24578999998765 78899999999998 4888888753
No 229
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=41.52 E-value=22 Score=30.06 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=12.5
Q ss_pred CccEEEEcccccccC
Q psy13286 98 HCKILVLDEADKLLS 112 (351)
Q Consensus 98 ~~~lvViDE~h~~~~ 112 (351)
+.+++++||+|.+..
T Consensus 98 ~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSG 112 (324)
T ss_dssp TCSEEEEECGGGGTT
T ss_pred CCCEEEEcCcccccC
Confidence 367999999998765
No 230
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=41.23 E-value=52 Score=27.12 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc
Q psy13286 202 STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 241 (351)
Q Consensus 202 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 241 (351)
+...++.+.+.|+.+|+.|. .+..++..+-.+.++.|..
T Consensus 47 t~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 47 THLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 34688999999999999974 5567888888888888865
No 231
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=40.94 E-value=17 Score=34.44 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=24.4
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEeeCc
Q psy13286 96 MDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFP 140 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 140 (351)
....+++|||||=.+. .+.+..++..+ ..+++|.|..
T Consensus 253 ~~~~dlliVDEAAaIp----~pll~~ll~~~----~~v~~~tTv~ 289 (671)
T 2zpa_A 253 DEQADWLVVDEAAAIP----APLLHQLVSRF----PRTLLTTTVQ 289 (671)
T ss_dssp CCCCSEEEEETGGGSC----HHHHHHHHTTS----SEEEEEEEBS
T ss_pred cccCCEEEEEchhcCC----HHHHHHHHhhC----CeEEEEecCC
Confidence 3468999999998653 34455555533 2577888864
No 232
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=40.77 E-value=65 Score=23.22 Aligned_cols=55 Identities=9% Similarity=0.082 Sum_probs=37.7
Q ss_pred HHHHHHHhhCCCCcEEEEeC------chHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHh
Q psy13286 182 HCLNTLFSKLQINQSIIFCN------STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDF 239 (351)
Q Consensus 182 ~~l~~~l~~~~~~~~lIf~~------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 239 (351)
..+..++.. .+++||+. ....|.++.+.|...++....+.-......+.++.+..
T Consensus 26 ~~v~~~i~~---~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~ 86 (135)
T 2wci_A 26 EKIQRQIAE---NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYA 86 (135)
T ss_dssp HHHHHHHHH---CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHHHhcc---CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHH
Confidence 334444443 46889987 57789999999999988877666655666656555443
No 233
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=40.25 E-value=1.3e+02 Score=23.29 Aligned_cols=121 Identities=12% Similarity=0.185 Sum_probs=73.6
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC----cCCCCCCCCCCCEEEEec
Q psy13286 194 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD----LFTRGIDVQAVNVVINFD 269 (351)
Q Consensus 194 ~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~----~~~~G~di~~~~~Vi~~~ 269 (351)
.++++.++..+....+.+.....+..+....+.+.. -....+.+ ....+++|+-. .+..-+++|- .+
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~--~v~~a~~~-~~~~dVIISRGgta~~lr~~~~iPV------V~ 75 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKNFIPITKTASLTR--ASKIAFGL-QDEVDAIISRGATSDYIKKSVSIPS------IS 75 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHH--HHHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSCE------EE
T ss_pred CcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHH--HHHHHHHh-cCCCeEEEECChHHHHHHHhCCCCE------EE
Confidence 467777787777776666666556677677776533 33444445 56678999865 4555566652 24
Q ss_pred CCCChhhHhhhccccccCCCceeEEEEeccchHHHHHHHHHHhccccCCCCccccc
Q psy13286 270 FPKMAETYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIKSIPKVIDP 325 (351)
Q Consensus 270 ~p~s~~~~~q~~GR~gR~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 325 (351)
.+.|..++++.+-++-+.+. ..+++-+.. -...+..+.+.++.++...+..-.+
T Consensus 76 I~~s~~Dil~al~~a~~~~~-kIavvg~~~-~~~~~~~~~~ll~~~i~~~~~~~~~ 129 (196)
T 2q5c_A 76 IKVTRFDTMRAVYNAKRFGN-ELALIAYKH-SIVDKHEIEAMLGVKIKEFLFSSED 129 (196)
T ss_dssp ECCCHHHHHHHHHHHGGGCS-EEEEEEESS-CSSCHHHHHHHHTCEEEEEEECSGG
T ss_pred EcCCHhHHHHHHHHHHhhCC-cEEEEeCcc-hhhHHHHHHHHhCCceEEEEeCCHH
Confidence 56678888888877755544 233332222 2234677888888887764443333
No 234
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=40.23 E-value=1.7e+02 Score=24.66 Aligned_cols=95 Identities=11% Similarity=0.092 Sum_probs=51.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCc---eEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhccCcCCCCccE
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNV---KVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKI 101 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~l 101 (351)
+..|+..|-.-+..+..+.+.+.....+. .+..+.+. ..+..+.+.....++ +....+
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~pl-f~~~kv 79 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN------------------TDWNAIFSLCQAMSL-FASRQT 79 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT------------------CCHHHHHHHHHHHHH-CCSCEE
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC------------------CCHHHHHHHhcCcCC-ccCCeE
Confidence 56777788877887777777664432221 22222221 112233333332222 456789
Q ss_pred EEEccccc-ccCcchHHHHHHHHHhCCCCCcEEEEEeeC
Q psy13286 102 LVLDEADK-LLSQDFKGMLDHVISILPHERQILLYSATF 139 (351)
Q Consensus 102 vViDE~h~-~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 139 (351)
+|+||+|. +... ....+...+...+....+++.+.++
T Consensus 80 vii~~~~~kl~~~-~~~aLl~~le~p~~~~~~il~~~~~ 117 (343)
T 1jr3_D 80 LLLLLPENGPNAA-INEQLLTLTGLLHDDLLLIVRGNKL 117 (343)
T ss_dssp EEEECCSSCCCTT-HHHHHHHHHTTCBTTEEEEEEESCC
T ss_pred EEEECCCCCCChH-HHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 99999997 5444 3444555556555555455444443
No 235
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=39.92 E-value=36 Score=24.59 Aligned_cols=39 Identities=5% Similarity=0.038 Sum_probs=21.8
Q ss_pred cEEEEcccccccCcchHHHHHHHHHh-CCCCCcEEEEEeeC
Q psy13286 100 KILVLDEADKLLSQDFKGMLDHVISI-LPHERQILLYSATF 139 (351)
Q Consensus 100 ~lvViDE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~~SaT~ 139 (351)
+.+++||+|.+.... ...+..++.. .+....+++.|...
T Consensus 77 ~~l~lDei~~l~~~~-q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 77 GVLYVGDIAQYSRNI-QTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp SEEEEEECTTCCHHH-HHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CeEEEeChHHCCHHH-HHHHHHHHHhCCCCCEEEEEecCCC
Confidence 689999999775432 2223333332 23445566555544
No 236
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=39.75 E-value=12 Score=35.53 Aligned_cols=59 Identities=8% Similarity=-0.004 Sum_probs=37.8
Q ss_pred CcccccCCcchh----hhcccCcC-CCCCceEEEEcCCHHHHHHHHHHHHHHHhhC---CceEEEEE
Q psy13286 1 MVQARQEPTQFL----YLNKLTPA-KITSKATLIIVPTRELALQTSQICIELAKHL---NVKVMVTT 59 (351)
Q Consensus 1 ~~~a~tgs~~l~----~l~~l~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~---~~~v~~~~ 59 (351)
+|.|+.|||--. -+..+... .....++|+|++|+..+.++.+.+.+..... ++.+.+++
T Consensus 19 lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~~v~Tfh 85 (673)
T 1uaa_A 19 LVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFH 85 (673)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTSEEEEHH
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCCEEEeHH
Confidence 467888887222 22222222 2233689999999999999999998875432 35555544
No 237
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=39.67 E-value=95 Score=21.71 Aligned_cols=46 Identities=7% Similarity=-0.066 Sum_probs=32.8
Q ss_pred CCcEEEEeCc------hHHHHHHHHHHHhcCCe---EEEeccCCCHHHHHHHHHH
Q psy13286 193 INQSIIFCNS------TQRVELLAKKITELGYC---CYYIHARMAQAHRNRVFHD 238 (351)
Q Consensus 193 ~~~~lIf~~~------~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~r~~~~~~ 238 (351)
..+++||..+ ...|.++.+.|...++. ...+.-....+.+..+.+.
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~ 69 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEF 69 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHH
Confidence 4679999884 78899999999998877 5555555555555555443
No 238
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=39.42 E-value=40 Score=27.56 Aligned_cols=37 Identities=5% Similarity=0.104 Sum_probs=29.4
Q ss_pred CCCcEEEEeCchH-HHHHHHHHHHhcCC-eEEEeccCCC
Q psy13286 192 QINQSIIFCNSTQ-RVELLAKKITELGY-CCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~-~~~~l~~~L~~~~~-~~~~~~~~~~ 228 (351)
+..+++|||.+-. .+..++..|+..|+ ++..+.|++.
T Consensus 80 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~ 118 (271)
T 1e0c_A 80 PEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLT 118 (271)
T ss_dssp TTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4567888998765 78899999999998 4788888754
No 239
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=39.36 E-value=30 Score=28.83 Aligned_cols=13 Identities=38% Similarity=0.429 Sum_probs=11.0
Q ss_pred ccEEEEccccccc
Q psy13286 99 CKILVLDEADKLL 111 (351)
Q Consensus 99 ~~lvViDE~h~~~ 111 (351)
-+++++||+|.+.
T Consensus 131 ~~vl~iDEid~l~ 143 (309)
T 3syl_A 131 GGVLFIDEAYYLY 143 (309)
T ss_dssp TSEEEEETGGGSC
T ss_pred CCEEEEEChhhhc
Confidence 3699999999885
No 240
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=38.98 E-value=31 Score=28.18 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=31.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCC-eEEEeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 228 (351)
+..++++||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 222 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 259 (271)
T 1e0c_A 222 PDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWG 259 (271)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 457899999998888899999999998 4888988764
No 241
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=37.74 E-value=72 Score=25.42 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=19.8
Q ss_pred cHHHHHHHhccCcCCCCccEEEEcccc
Q psy13286 82 PGRILDLMDKQVANMDHCKILVLDEAD 108 (351)
Q Consensus 82 p~~l~~~l~~~~~~~~~~~lvViDE~h 108 (351)
|..+.+.|....++.+++..+-+||--
T Consensus 45 p~~~y~~L~~~~idw~~v~~f~~DEr~ 71 (226)
T 3lwd_A 45 PKPFFTSLAAKALPWARVDVTLADERW 71 (226)
T ss_dssp THHHHHHHHTSCSCGGGEEEEESEEES
T ss_pred HHHHHHHHHhcCCCchhEEEEEeeecc
Confidence 444566565666788899999999954
No 242
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=37.56 E-value=1.6e+02 Score=23.71 Aligned_cols=179 Identities=11% Similarity=0.124 Sum_probs=89.1
Q ss_pred ceEEEEcCC--HHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHH-hCCCcEEEEccH------HHHHHHhcc
Q psy13286 25 KATLIIVPT--RELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRI-YQKVHLIIATPG------RILDLMDKQ 92 (351)
Q Consensus 25 ~~~lil~P~--~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~-~~~~~Ilv~Tp~------~l~~~l~~~ 92 (351)
.++-+++|. ..--.++...+++.+...|+.+...........+. ..+ ..+.+-+|..|. ...+.+...
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~ 88 (293)
T 3l6u_A 9 NIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKA 88 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHT
T ss_pred cEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHc
Confidence 566677774 44566777778888888899988887765543332 222 345664444332 222333222
Q ss_pred CcCCCCccEEEEccccc-------ccCcc---hHHHHHHHHHhC-CCC----CcEEEEEeeCcch-----HHHHHHHhcC
Q psy13286 93 VANMDHCKILVLDEADK-------LLSQD---FKGMLDHVISIL-PHE----RQILLYSATFPLT-----VKNFMEKHLK 152 (351)
Q Consensus 93 ~~~~~~~~lvViDE~h~-------~~~~~---~~~~~~~~~~~~-~~~----~~~i~~SaT~~~~-----~~~~~~~~~~ 152 (351)
.+-+|++|.... +..++ .......+...+ ... .++.+++...... ...+....-.
T Consensus 89 -----~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~ 163 (293)
T 3l6u_A 89 -----GIPVFAIDRMIRSDAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIEN 163 (293)
T ss_dssp -----TCCEEEESSCCCCTTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTT
T ss_pred -----CCCEEEecCCCCCCcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHh
Confidence 233454443211 11111 112222333322 111 2577777654322 1122222211
Q ss_pred CCeEEeeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCC
Q psy13286 153 DPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY 218 (351)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~ 218 (351)
.| .+.+. ...........-...+..++...+ ....|||.+...|..+.+.|+..|+
T Consensus 164 ~~-g~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~~~d~~a~g~~~al~~~g~ 219 (293)
T 3l6u_A 164 EP-TLSIV--------DSVSGNYDPVTSERVMRQVIDSGI-PFDAVYCHNDDIAMGVLEALKKAKI 219 (293)
T ss_dssp CT-TEEEE--------EEEECTTCHHHHHHHHHHHHHTTC-CCSEEEESSHHHHHHHHHHHHHTTC
T ss_pred CC-CcEEe--------eeccCCCCHHHHHHHHHHHHHhCC-CCCEEEECCchHHHHHHHHHHhCCC
Confidence 10 11110 001111122344566777777654 5678999999999999999988876
No 243
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=37.54 E-value=29 Score=24.63 Aligned_cols=38 Identities=3% Similarity=-0.099 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHh
Q psy13286 202 STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDF 239 (351)
Q Consensus 202 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 239 (351)
.++.+.++...|...++....+.-.+..+.|.++.+..
T Consensus 15 ~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 15 IKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence 35667899999999999988888888999999998877
No 244
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=37.07 E-value=33 Score=26.77 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=29.4
Q ss_pred CCccEEEEcccccccCcc--hHHHHHHHHHhCCCCCcEEEEEeeCcchHHHH
Q psy13286 97 DHCKILVLDEADKLLSQD--FKGMLDHVISILPHERQILLYSATFPLTVKNF 146 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 146 (351)
..+++||+||+-.....+ -.+.+..++...+....+|+.+--.++.+.+.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 678999999996433322 22345566666666555555555455444433
No 245
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=36.96 E-value=1.4e+02 Score=23.86 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=12.5
Q ss_pred CCccEEEEccccccc
Q psy13286 97 DHCKILVLDEADKLL 111 (351)
Q Consensus 97 ~~~~lvViDE~h~~~ 111 (351)
..+++|++||++-+.
T Consensus 89 ~~~dvViIDEaQF~~ 103 (234)
T 2orv_A 89 LGVAVIGIDEGQFFP 103 (234)
T ss_dssp TTCSEEEESSGGGCT
T ss_pred ccCCEEEEEchhhhh
Confidence 467999999999664
No 246
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=36.78 E-value=48 Score=33.09 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=54.1
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHHhCC---CcEEEEccHHHHHHHhccCcCCC
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRIYQK---VHLIIATPGRILDLMDKQVANMD 97 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~---~~Ilv~Tp~~l~~~l~~~~~~~~ 97 (351)
+.+++|+|+++.-+..+.+.+++ ..++++..++|+.+..+. +....++ .+|+|+| ..+ ...+++.
T Consensus 503 ~~k~iVF~~~~~~~~~l~~~L~~---~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-~v~-----~~GlDl~ 573 (968)
T 3dmq_A 503 SQKVLVICAKAATALQLEQVLRE---REGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-EIG-----SEGRNFQ 573 (968)
T ss_dssp SSCCCEECSSTHHHHHHHHHHHT---TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-CCT-----TCSSCCT
T ss_pred CCCEEEEeCcHHHHHHHHHHHHH---HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-chh-----hcCCCcc
Confidence 47999999999998777776643 348899999999764322 3333343 8899999 333 3355778
Q ss_pred CccEEEEcccc
Q psy13286 98 HCKILVLDEAD 108 (351)
Q Consensus 98 ~~~lvViDE~h 108 (351)
.+++||+-+..
T Consensus 574 ~~~~VI~~d~p 584 (968)
T 3dmq_A 574 FASHMVMFDLP 584 (968)
T ss_dssp TCCEEECSSCC
T ss_pred cCcEEEEecCC
Confidence 88999887665
No 247
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=36.76 E-value=60 Score=23.80 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=22.7
Q ss_pred CcEEE-Ee-CchHHHH----HHHHHHHhcCC---eEEEeccCCCH
Q psy13286 194 NQSII-FC-NSTQRVE----LLAKKITELGY---CCYYIHARMAQ 229 (351)
Q Consensus 194 ~~~lI-f~-~~~~~~~----~l~~~L~~~~~---~~~~~~~~~~~ 229 (351)
.+.+| || .+-..+. .++..|...|+ ++..+.|++..
T Consensus 68 ~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~ 112 (152)
T 2j6p_A 68 KELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEA 112 (152)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHH
Confidence 44444 58 4433333 44477888885 78889998754
No 248
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=36.53 E-value=7.4 Score=35.17 Aligned_cols=69 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHH---Hh-CCCcEEEEccHHHHHHHhccCcCCCCcc
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMR---IY-QKVHLIIATPGRILDLMDKQVANMDHCK 100 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 100 (351)
.+++|.||++.-+..++..+.+. +..+..++|+.+..+.... .. ...+|+|+|.- + ...+++..++
T Consensus 334 ~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~-~-----~~GlDip~v~ 403 (479)
T 3fmp_B 334 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV-C-----ARGIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccc-c-----ccCCccccCC
Confidence 68999999999998888777554 6778888888654332211 21 24779999841 1 2234567777
Q ss_pred EEE
Q psy13286 101 ILV 103 (351)
Q Consensus 101 lvV 103 (351)
+||
T Consensus 404 ~VI 406 (479)
T 3fmp_B 404 VVI 406 (479)
T ss_dssp ---
T ss_pred EEE
Confidence 776
No 249
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=36.13 E-value=37 Score=27.99 Aligned_cols=37 Identities=3% Similarity=-0.058 Sum_probs=28.9
Q ss_pred CCCcEEEEeCchH-HHHHHHHHHHhcCC-eEEEeccCCC
Q psy13286 192 QINQSIIFCNSTQ-RVELLAKKITELGY-CCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~-~~~~l~~~L~~~~~-~~~~~~~~~~ 228 (351)
+..++++||.+-. .+..++..|+..|+ ++..+.|++.
T Consensus 78 ~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 116 (285)
T 1uar_A 78 NDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQ 116 (285)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4567889998765 57889999999988 4888888653
No 250
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=35.85 E-value=54 Score=33.28 Aligned_cols=67 Identities=12% Similarity=-0.015 Sum_probs=49.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC-----cCCCCC-CCCCCCEE
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD-----LFTRGI-DVQAVNVV 265 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~G~-di~~~~~V 265 (351)
.+++++|.++++.-+...++.++.....+..++|+.+. ++..+|+|+|+ .+..+- .+.++.+|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI-----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBC-----------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCcccc-----------CCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 46789999999999999999999887788899998763 35688999994 333332 24556666
Q ss_pred EEec
Q psy13286 266 INFD 269 (351)
Q Consensus 266 i~~~ 269 (351)
|.-.
T Consensus 295 VIDE 298 (1108)
T 3l9o_A 295 IFDE 298 (1108)
T ss_dssp EEET
T ss_pred EEhh
Confidence 6543
No 251
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=35.81 E-value=23 Score=34.02 Aligned_cols=36 Identities=0% Similarity=0.045 Sum_probs=29.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCH
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQ 229 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 229 (351)
.+.+.|.+++..++..+.+.|.+.+++..... +.+-
T Consensus 351 ~~diAIL~R~~~~~~~le~~L~~~gIPy~~~g-~~~f 386 (724)
T 1pjr_A 351 YRDFAVLYRTNAQSRVMEEMLLKANIPYQIVG-GLKF 386 (724)
T ss_dssp GGGEEEEESSGGGHHHHHHHHHHTTCCEEEET-SCCG
T ss_pred hhheeeeeecchhHHHHHHHHHHcCCCEEEeC-Ccch
Confidence 35688999999999999999999999976654 4443
No 252
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=35.73 E-value=1.3e+02 Score=22.94 Aligned_cols=47 Identities=15% Similarity=0.373 Sum_probs=37.1
Q ss_pred CcEEEEeCc-----------hHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc
Q psy13286 194 NQSIIFCNS-----------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 241 (351)
Q Consensus 194 ~~~lIf~~~-----------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 241 (351)
+.+||+.+. ...++.+++.|+.+|+.|. .+..++..+-.+.++.|.+
T Consensus 44 g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 44 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 456777654 5788999999999999975 4566888888888888854
No 253
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=35.73 E-value=1.5e+02 Score=22.85 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=37.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH-HHHhCCCcEEEEccHHHHHHHh
Q psy13286 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI-MRIYQKVHLIIATPGRILDLMD 90 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~Ilv~Tp~~l~~~l~ 90 (351)
.++++++|...|..-..+.+.++ +..+....++....-.. ..+..+++|+|+--... .+++
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~----~~~i~i~~~~l~~~v~~a~~~~~~~dVIISRGgta-~~lr 66 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEK----NFIPITKTASLTRASKIAFGLQDEVDAIISRGATS-DYIK 66 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH----TCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHH-HHHH
T ss_pred CcEEEEEccHHHHHHHHHHHhhh----CCceEEEECCHHHHHHHHHHhcCCCeEEEECChHH-HHHH
Confidence 68999999999987555554433 44555566664422221 12246788888866655 4444
No 254
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=35.55 E-value=61 Score=28.63 Aligned_cols=38 Identities=8% Similarity=0.056 Sum_probs=31.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCC-eEEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~ 229 (351)
+..++++||.+-..+..++..|+..|+ ++..+.|++..
T Consensus 202 ~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~ 240 (423)
T 2wlr_A 202 HDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQT 240 (423)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHH
T ss_pred CCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHH
Confidence 456799999988888999999999998 58888887653
No 255
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=35.41 E-value=67 Score=25.41 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=32.0
Q ss_pred HHHHHhhCC-CCcEEEEeCchH-HHHHHHHHHHhcCCe-EEEeccC
Q psy13286 184 LNTLFSKLQ-INQSIIFCNSTQ-RVELLAKKITELGYC-CYYIHAR 226 (351)
Q Consensus 184 l~~~l~~~~-~~~~lIf~~~~~-~~~~l~~~L~~~~~~-~~~~~~~ 226 (351)
+...+.... ..++++||.+-. .+..++..|+ .|+. +..+.|+
T Consensus 51 ~~~~~~~l~~~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 51 LTELFQTLGLRSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp HHHHHHHTTCCSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred HHHHHHhcCCCCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 344444332 578999998876 8889999999 9985 8889988
No 256
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=35.14 E-value=58 Score=26.64 Aligned_cols=37 Identities=5% Similarity=-0.047 Sum_probs=28.9
Q ss_pred CCCcEEEEeCch-HHHHHHHHHHHhcCC-eEEEeccCCC
Q psy13286 192 QINQSIIFCNST-QRVELLAKKITELGY-CCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~-~~~~~l~~~L~~~~~-~~~~~~~~~~ 228 (351)
+..++++||.+- ..+..++..|+..|+ ++..+.|++.
T Consensus 76 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 114 (277)
T 3aay_A 76 NEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRK 114 (277)
T ss_dssp TTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHH
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHH
Confidence 456788999874 357788999999998 6888888754
No 257
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=34.84 E-value=22 Score=29.40 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=41.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 241 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 241 (351)
+.+-+||+.+....++.+.+.|+.+|+.|. .+..++..+-.+.++.|..
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 90 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEVQ-KFLHLSMHGISQILGQFAC 90 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEEE-EEESCBHHHHHHHHHHHHT
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 346789999999999999999999999975 4567888888888888865
No 258
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=34.60 E-value=71 Score=25.56 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=19.6
Q ss_pred cHHHHHHHhccCcCCCCccEEEEcccc
Q psy13286 82 PGRILDLMDKQVANMDHCKILVLDEAD 108 (351)
Q Consensus 82 p~~l~~~l~~~~~~~~~~~lvViDE~h 108 (351)
|..+.+.|....++.+++..+-+||--
T Consensus 46 p~~~y~~L~~~~i~w~~v~~f~~DEr~ 72 (232)
T 3lhi_A 46 PIAFFNALSQKDLDWKNVGITLADERI 72 (232)
T ss_dssp THHHHHHHHTSCCCGGGEEEEESEEES
T ss_pred HHHHHHHHHhcCCCchheEEEEeeecc
Confidence 444555555566788899999999944
No 259
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=34.46 E-value=41 Score=30.01 Aligned_cols=107 Identities=20% Similarity=0.340 Sum_probs=50.6
Q ss_pred EEEcCCHHHHHHHHHHHHHHHhhCC-ceEEEEECCcchHHH-----HHH-H---hCCCcEEEEccHHHHHHH----hccC
Q psy13286 28 LIIVPTRELALQTSQICIELAKHLN-VKVMVTTGGTNLRDD-----IMR-I---YQKVHLIIATPGRILDLM----DKQV 93 (351)
Q Consensus 28 lil~P~~~L~~q~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-----~~~-~---~~~~~Ilv~Tp~~l~~~l----~~~~ 93 (351)
+++.+...++.+ .+..+....+ .+...++|.....+- +.. + ..+..++..+.+.+...+ ....
T Consensus 107 fv~g~~n~~a~~---~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~ 183 (440)
T 2z4s_A 107 FVVGPGNSFAYH---AALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGK 183 (440)
T ss_dssp CCCCTTTHHHHH---HHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTC
T ss_pred cCCCCchHHHHH---HHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHccc
Confidence 344555555533 3334444333 556677776543211 111 1 114566666665553322 1111
Q ss_pred c-----CCC-CccEEEEcccccccCc-chHHHHHHHHHh-CCCCCcEEEEEe
Q psy13286 94 A-----NMD-HCKILVLDEADKLLSQ-DFKGMLDHVISI-LPHERQILLYSA 137 (351)
Q Consensus 94 ~-----~~~-~~~lvViDE~h~~~~~-~~~~~~~~~~~~-~~~~~~~i~~Sa 137 (351)
. .+. ..+++++||+|.+... .....+..++.. .....++++.|.
T Consensus 184 ~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 184 LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 0 123 6789999999988763 223333333333 233444554443
No 260
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=34.19 E-value=15 Score=27.57 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=11.7
Q ss_pred CccEEEEccccccc
Q psy13286 98 HCKILVLDEADKLL 111 (351)
Q Consensus 98 ~~~lvViDE~h~~~ 111 (351)
...++++||+|.+.
T Consensus 115 ~~~vl~iDe~~~l~ 128 (187)
T 2p65_A 115 GQVVMFIDEIHTVV 128 (187)
T ss_dssp TSEEEEETTGGGGS
T ss_pred CceEEEEeCHHHhc
Confidence 34699999999886
No 261
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=34.16 E-value=49 Score=26.91 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=12.3
Q ss_pred CCccEEEEccccccc
Q psy13286 97 DHCKILVLDEADKLL 111 (351)
Q Consensus 97 ~~~~lvViDE~h~~~ 111 (351)
...++|++||+|.+.
T Consensus 123 ~~~~vl~iDEid~l~ 137 (272)
T 1d2n_A 123 SQLSCVVVDDIERLL 137 (272)
T ss_dssp SSEEEEEECCHHHHT
T ss_pred cCCcEEEEEChhhhh
Confidence 346899999999873
No 262
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=33.96 E-value=80 Score=30.14 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=49.8
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhh-----------------------------CCceEEEEECCcchHHHHH---HH
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKH-----------------------------LNVKVMVTTGGTNLRDDIM---RI 71 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~-----------------------------~~~~v~~~~~~~~~~~~~~---~~ 71 (351)
++++||.+|++.-+..++..+.+.... ....+...+++.+..+... ..
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 478999999999999999888775332 0124788888876544322 22
Q ss_pred h-CCCcEEEEccHHHHHHHhccCcCCCCccEEEEccc
Q psy13286 72 Y-QKVHLIIATPGRILDLMDKQVANMDHCKILVLDEA 107 (351)
Q Consensus 72 ~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViDE~ 107 (351)
. ...+|+|+|.- + ...+++....+ |||..
T Consensus 317 ~~g~~~vlvaT~~-l-----~~Gvdip~~~~-VI~~~ 346 (720)
T 2zj8_A 317 RKGIIKAVVATPT-L-----SAGINTPAFRV-IIRDI 346 (720)
T ss_dssp HTTSSCEEEECST-T-----GGGCCCCBSEE-EECCS
T ss_pred HCCCCeEEEECcH-h-----hccCCCCceEE-EEcCC
Confidence 2 35789999952 1 12345666654 55543
No 263
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=33.89 E-value=80 Score=26.19 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=24.3
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
....++|+||+|.+.... ...+..++...+....+++.|
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEEe
Confidence 456799999999875433 334555555555555555443
No 264
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=33.81 E-value=26 Score=26.40 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=23.4
Q ss_pred CCccEEEEccccccc-CcchHHHHHHHHHhCC-CCCcEEEEEeeCcc
Q psy13286 97 DHCKILVLDEADKLL-SQDFKGMLDHVISILP-HERQILLYSATFPL 141 (351)
Q Consensus 97 ~~~~lvViDE~h~~~-~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~~ 141 (351)
.+.+++|+||.+... +......+..++.... ....+++.|...+.
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 466899999998532 3223334444443332 23344544444433
No 265
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=33.80 E-value=1e+02 Score=29.39 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=49.1
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhh--------------------------------CCceEEEEECCcchHHHHHH
Q psy13286 23 TSKATLIIVPTRELALQTSQICIELAKH--------------------------------LNVKVMVTTGGTNLRDDIMR 70 (351)
Q Consensus 23 ~~~~~lil~P~~~L~~q~~~~~~~~~~~--------------------------------~~~~v~~~~~~~~~~~~~~~ 70 (351)
.++.+||.+|++.-+.+.+..+.+.... .+..+..++|+.+..+....
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 3479999999999999998888764321 01347888888775444222
Q ss_pred ---H-hCCCcEEEEccHHHHHHHhccCcCCCCccEEE
Q psy13286 71 ---I-YQKVHLIIATPGRILDLMDKQVANMDHCKILV 103 (351)
Q Consensus 71 ---~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvV 103 (351)
. .....|+|+|.- + ...+++....+||
T Consensus 331 ~~~f~~g~~~vlvaT~~-l-----~~Gidip~~~~VI 361 (715)
T 2va8_A 331 EEGFRQRKIKVIVATPT-L-----AAGVNLPARTVII 361 (715)
T ss_dssp HHHHHTTCSCEEEECGG-G-----GGSSCCCBSEEEE
T ss_pred HHHHHcCCCeEEEEChH-H-----hcccCCCceEEEE
Confidence 2 235789999942 1 2244667776544
No 266
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=33.43 E-value=41 Score=29.28 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=25.3
Q ss_pred CccEEEEcccccccCc---chHHHHHHHHHhCCC-CCcEEEEEeeC
Q psy13286 98 HCKILVLDEADKLLSQ---DFKGMLDHVISILPH-ERQILLYSATF 139 (351)
Q Consensus 98 ~~~lvViDE~h~~~~~---~~~~~~~~~~~~~~~-~~~~i~~SaT~ 139 (351)
.-.++|+||+|.+... .+...+..+.+...+ ...+++.|.++
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~ 307 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNV 307 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCH
Confidence 4568999999999852 344555666555543 33344444443
No 267
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=33.41 E-value=37 Score=25.78 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=28.6
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEe
Q psy13286 98 HCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSA 137 (351)
Q Consensus 98 ~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 137 (351)
...++++||...-++......+..++..+....+++++|-
T Consensus 86 ~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith 125 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITL 125 (173)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 3469999999988887666666666666656667666653
No 268
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=33.02 E-value=1.9e+02 Score=23.22 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=29.6
Q ss_pred cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCe
Q psy13286 179 QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC 219 (351)
Q Consensus 179 ~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~ 219 (351)
.-...+..+++.. +.+..|||.+...|..+.+.|++.|+.
T Consensus 174 ~~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 213 (289)
T 3g85_A 174 GGVDAAKKLMKLK-NTPKALFCNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp HHHHHHHHHTTSS-SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCC-CCCcEEEEcCCHHHHHHHHHHHHcCCC
Confidence 3455666677654 356788999999999999999887654
No 269
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=32.90 E-value=1.3e+02 Score=25.26 Aligned_cols=47 Identities=15% Similarity=0.373 Sum_probs=39.1
Q ss_pred CcEEEEeCc-----------hHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc
Q psy13286 194 NQSIIFCNS-----------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 241 (351)
Q Consensus 194 ~~~lIf~~~-----------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 241 (351)
+-+||+++. ...++.+++.|+.+|+.|. .+.+++..+-.+.++.|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 458899877 6789999999999999975 5567888888999999854
No 270
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=32.87 E-value=1.6e+02 Score=22.17 Aligned_cols=56 Identities=4% Similarity=-0.104 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHhcCCeEEEec--cCCCHHHHHHHHHHhhcCCccEEEEeCcCCCCCC
Q psy13286 203 TQRVELLAKKITELGYCCYYIH--ARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGID 258 (351)
Q Consensus 203 ~~~~~~l~~~L~~~~~~~~~~~--~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d 258 (351)
......+++.|.+.|+.+..+. ++-...-+..+.+....+..+++|+|.-.+.|-|
T Consensus 39 D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~~~~ 96 (178)
T 3iwt_A 39 DESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPT 96 (178)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTT
T ss_pred cchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcccCCC
Confidence 3445678999999998864332 2222222333333445677899999998887765
No 271
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=32.65 E-value=71 Score=26.08 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=30.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh-cCC-eEEEeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITE-LGY-CCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~-~~~-~~~~~~~~~~ 228 (351)
+..++++||.+-..+...+..|.. .|+ ++..+.|++.
T Consensus 225 ~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 263 (277)
T 3aay_A 225 NSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWT 263 (277)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHH
Confidence 457899999998888888999985 888 4889999864
No 272
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=32.34 E-value=39 Score=26.38 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=21.0
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 98 HCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 98 ~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
.-.++|+||+|.+.... ...+...+...+....+++.|
T Consensus 126 ~~~vlviDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSEEEEEETGGGSCHHH-HHHHHHHHHSCCTTEEEEEEE
T ss_pred CceEEEEECcccccHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 45699999999864332 333444444443444444443
No 273
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=32.32 E-value=38 Score=28.50 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=24.8
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 96 MDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 96 ~~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
.....++|+||+|.+..... ..+...+..-+....+++.|
T Consensus 80 ~~~~kvviIdead~lt~~a~-naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQAA-NAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHHH-HHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHHH-HHHHHHHhCCCCCeEEEEEE
Confidence 34678999999998765443 33445555555555455444
No 274
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=32.23 E-value=76 Score=25.41 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=19.3
Q ss_pred cHHHHHHHhccCcCCCCccEEEEcccc
Q psy13286 82 PGRILDLMDKQVANMDHCKILVLDEAD 108 (351)
Q Consensus 82 p~~l~~~l~~~~~~~~~~~lvViDE~h 108 (351)
|..+.+.|....++.+++..+-+||--
T Consensus 49 p~~~y~~L~~~~idw~~v~~f~~DEr~ 75 (233)
T 3nwp_A 49 PLKLFQLLSMKSIDWSDVYITLADERW 75 (233)
T ss_dssp THHHHHHHHHCCSCGGGEEEEESEEES
T ss_pred HHHHHHHHHhcCCChhHeEEEeCeecc
Confidence 444555555566778899999999954
No 275
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=31.54 E-value=26 Score=25.13 Aligned_cols=36 Identities=8% Similarity=0.231 Sum_probs=27.9
Q ss_pred CCcEEEEeCchHH---------HHHHHHHHHhcCCeEEEeccCCC
Q psy13286 193 INQSIIFCNSTQR---------VELLAKKITELGYCCYYIHARMA 228 (351)
Q Consensus 193 ~~~~lIf~~~~~~---------~~~l~~~L~~~~~~~~~~~~~~~ 228 (351)
..++++||.+-.. +..++..|...|+++..+.|++.
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~ 127 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 127 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHH
Confidence 3679999987544 35678888888989999999864
No 276
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=31.52 E-value=1.2e+02 Score=20.46 Aligned_cols=47 Identities=6% Similarity=-0.037 Sum_probs=34.1
Q ss_pred CCcEEEEeC------chHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHh
Q psy13286 193 INQSIIFCN------STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDF 239 (351)
Q Consensus 193 ~~~~lIf~~------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 239 (351)
..+++||.. ....|.++...|...++....+.-......+.++.+..
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 356888877 45678899999999998877777666666566555444
No 277
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=30.68 E-value=39 Score=29.01 Aligned_cols=28 Identities=32% Similarity=0.339 Sum_probs=17.6
Q ss_pred CccEEEEcccccccCcc-hHHHHHHHHHh
Q psy13286 98 HCKILVLDEADKLLSQD-FKGMLDHVISI 125 (351)
Q Consensus 98 ~~~lvViDE~h~~~~~~-~~~~~~~~~~~ 125 (351)
...++++||+|.+.... ....+..+...
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~ 158 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRI 158 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHG
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhc
Confidence 35599999999876542 23444444443
No 278
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=30.43 E-value=68 Score=23.79 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=11.5
Q ss_pred CccEEEEccccccc
Q psy13286 98 HCKILVLDEADKLL 111 (351)
Q Consensus 98 ~~~lvViDE~h~~~ 111 (351)
...++++||+|.+.
T Consensus 115 ~~~vl~iDe~~~l~ 128 (195)
T 1jbk_A 115 GNVILFIDELHTMV 128 (195)
T ss_dssp TTEEEEEETGGGGT
T ss_pred CCeEEEEeCHHHHh
Confidence 34589999999886
No 279
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=30.24 E-value=63 Score=22.19 Aligned_cols=54 Identities=13% Similarity=0.216 Sum_probs=28.4
Q ss_pred ceEEEEcC----CHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHH
Q psy13286 25 KATLIIVP----TRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRI 85 (351)
Q Consensus 25 ~~~lil~P----~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l 85 (351)
-+++++|+ |.-++..+ ++.++..++.+....-+...... .....|++++||+--
T Consensus 5 mkIlvvC~~G~~TSll~~kl----~~~~~~~gi~~~i~~~~~~~~~~---~~~~~D~Ii~t~~l~ 62 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRI----EKYAKSKNINATIEAIAETRLSE---VVDRFDVVLLAPQSR 62 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHH----HHHHHHHTCSEEEEEECSTTHHH---HTTTCSEEEECSCCS
T ss_pred eEEEEECCChHhHHHHHHHH----HHHHHHCCCCeEEEEecHHHHHh---hcCCCCEEEECCccH
Confidence 35788877 33444444 44444445543322222222221 245789999999743
No 280
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=29.88 E-value=58 Score=27.05 Aligned_cols=38 Identities=11% Similarity=-0.048 Sum_probs=31.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCCH
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~ 229 (351)
+..++++||.+=..+...+..|...|+. +..+.|++..
T Consensus 239 ~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~ 277 (296)
T 1rhs_A 239 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFE 277 (296)
T ss_dssp TTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHHH
Confidence 4578999999988888888889999985 8889998754
No 281
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=29.73 E-value=92 Score=25.42 Aligned_cols=53 Identities=9% Similarity=-0.012 Sum_probs=37.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCC----eEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGY----CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
..+++||.+++++-+....+.+++.+. .+..++++..... -..+..+|+|+|.
T Consensus 156 ~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~ 212 (282)
T 1rif_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTW 212 (282)
T ss_dssp CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEch
Confidence 345899999999999999998887643 4556666654321 1125578999995
No 282
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=29.72 E-value=2.1e+02 Score=22.66 Aligned_cols=39 Identities=10% Similarity=0.016 Sum_probs=30.3
Q ss_pred cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCC
Q psy13286 179 QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY 218 (351)
Q Consensus 179 ~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~ 218 (351)
.-...+..++...+ ....|||.+...+..+.+.+++.|+
T Consensus 173 ~~~~~~~~~l~~~~-~~~ai~~~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 173 AARSEMLRLLKETP-TIDGLFTPNESTTIGALVAIRQSGM 211 (276)
T ss_dssp HHHHHHHHHHHHCS-CCCEEECCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCC-CceEEEECCchhhhHHHHHHHHcCC
Confidence 34566677777664 5688999999999999999988764
No 283
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=29.24 E-value=2.2e+02 Score=22.81 Aligned_cols=179 Identities=12% Similarity=0.100 Sum_probs=88.2
Q ss_pred ceEEEEcCC-------HHHHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHH-hCCCcEEEEccH----HHHHHH
Q psy13286 25 KATLIIVPT-------RELALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRI-YQKVHLIIATPG----RILDLM 89 (351)
Q Consensus 25 ~~~lil~P~-------~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~-~~~~~Ilv~Tp~----~l~~~l 89 (351)
..+-+++|. ..--.++.+.+++.+...|..+...........+ ...+ ..+.+-+|..|. ...+.+
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~l 88 (292)
T 3k4h_A 9 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRENDRIIQYL 88 (292)
T ss_dssp CEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTCHHHHHH
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHH
Confidence 577778887 3345566777777778888888776665443322 2222 245665554332 223333
Q ss_pred hccCcCCCCccEEEEcccc-------cccCcc--hH-HHHHHHHHhCCCCCcEEEEEeeCcchH-----HHHHHHhcCCC
Q psy13286 90 DKQVANMDHCKILVLDEAD-------KLLSQD--FK-GMLDHVISILPHERQILLYSATFPLTV-----KNFMEKHLKDP 154 (351)
Q Consensus 90 ~~~~~~~~~~~lvViDE~h-------~~~~~~--~~-~~~~~~~~~~~~~~~~i~~SaT~~~~~-----~~~~~~~~~~~ 154 (351)
.. ..+-+|++|... .+..++ .. .....+.. . ...++.+++....... ..+....-...
T Consensus 89 ~~-----~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~-~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g 161 (292)
T 3k4h_A 89 HE-----QNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLIS-L-GHKQIAFIGGGSDLLVTRDRLAGMSDALKLAD 161 (292)
T ss_dssp HH-----TTCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHHHH-T-TCCCEEEEESCTTBHHHHHHHHHHHHHHHHTT
T ss_pred HH-----CCCCEEEECCCCCCCCCCCEEEECcHHHHHHHHHHHHH-C-CCceEEEEeCcccchhHHHHHHHHHHHHHHcC
Confidence 22 233455555321 111111 11 22223333 2 4446777776543221 11111111010
Q ss_pred eEEeeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCe
Q psy13286 155 YEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC 219 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~ 219 (351)
.. . ..............-...+..++...+ .+..|||.+...|..+.+.|++.|+.
T Consensus 162 ~~--~------~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~~~d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 162 IV--L------PKEYILHFDFSRESGQQAVEELMGLQQ-PPTAIMATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp CC--C------CGGGEEECCSSHHHHHHHHHHHHTSSS-CCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CC--C------ChheEEecCCCHHHHHHHHHHHHcCCC-CCcEEEEcChHHHHHHHHHHHHhCCC
Confidence 00 0 000011111122334566677776543 56788899999999999999877653
No 284
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=29.07 E-value=1.8e+02 Score=23.75 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=47.0
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHHhC--CCcEEEEccHHHHHHHhccCcCCCC
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRIYQ--KVHLIIATPGRILDLMDKQVANMDH 98 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~--~~~Ilv~Tp~~l~~~l~~~~~~~~~ 98 (351)
+.++||.+.+...+..+.+.+.+. .++++..++|+.+..+.. ....+ ..+|++.++... ...+++..
T Consensus 112 ~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~-----g~Glnl~~ 183 (271)
T 1z5z_A 112 GDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAG-----GFGINLTS 183 (271)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTT-----CCCCCCTT
T ss_pred CCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhh-----cCCcCccc
Confidence 469999999999887777766542 267788889987643332 22222 345444444433 23445667
Q ss_pred ccEEEEcccc
Q psy13286 99 CKILVLDEAD 108 (351)
Q Consensus 99 ~~lvViDE~h 108 (351)
.+.||+=+..
T Consensus 184 a~~VI~~d~~ 193 (271)
T 1z5z_A 184 ANRVIHFDRW 193 (271)
T ss_dssp CSEEEECSCC
T ss_pred CCEEEEECCC
Confidence 7777664443
No 285
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=28.74 E-value=75 Score=30.22 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=48.6
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhh--------------------------CCceEEEEECCcchHHHHHH---H-hC
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKH--------------------------LNVKVMVTTGGTNLRDDIMR---I-YQ 73 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~~~~~---~-~~ 73 (351)
++++||.+|++.-+...+..+.+.... .+..+...+|+.+..+.... . ..
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 478999999999999999888765321 01246678888765443222 2 23
Q ss_pred CCcEEEEccHHHHHHHhccCcCCCCccEEEEc
Q psy13286 74 KVHLIIATPGRILDLMDKQVANMDHCKILVLD 105 (351)
Q Consensus 74 ~~~Ilv~Tp~~l~~~l~~~~~~~~~~~lvViD 105 (351)
..+|+|+|.- -...+++....+ |||
T Consensus 322 ~~~vlvaT~~------l~~Gidip~~~~-VI~ 346 (702)
T 2p6r_A 322 NIKVVVATPT------LAAGVNLPARRV-IVR 346 (702)
T ss_dssp SCCEEEECST------TTSSSCCCBSEE-EEC
T ss_pred CCeEEEECcH------HhccCCCCceEE-EEc
Confidence 5789999962 123446666655 555
No 286
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.36 E-value=1.1e+02 Score=25.85 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=25.6
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
...+++|+||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999987543 3344556666666666555443
No 287
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=28.29 E-value=45 Score=30.69 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=32.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCH
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQ 229 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 229 (351)
..++++||.+-..+...+..|+..|+++..+.|++..
T Consensus 524 ~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~~ 560 (565)
T 3ntd_A 524 DKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYRT 560 (565)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHHH
T ss_pred cCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHHH
Confidence 4679999999888999999999999999999998653
No 288
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=28.10 E-value=58 Score=23.47 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=22.3
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEe
Q psy13286 100 KILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSA 137 (351)
Q Consensus 100 ~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 137 (351)
+.+++||+|.+... ....+...+...+...++++.|.
T Consensus 78 g~l~ldei~~l~~~-~q~~Ll~~l~~~~~~~~~I~~t~ 114 (145)
T 3n70_A 78 GTLVLSHPEHLTRE-QQYHLVQLQSQEHRPFRLIGIGD 114 (145)
T ss_dssp SCEEEECGGGSCHH-HHHHHHHHHHSSSCSSCEEEEES
T ss_pred cEEEEcChHHCCHH-HHHHHHHHHhhcCCCEEEEEECC
Confidence 57999999976543 33344444444555565655544
No 289
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=27.80 E-value=1.5e+02 Score=20.54 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=36.6
Q ss_pred HHHHHHhhCCCCcEEEEeC------chHHHHHHHHHHHhcCCe-EEEeccCCCHHHHHHHHHH
Q psy13286 183 CLNTLFSKLQINQSIIFCN------STQRVELLAKKITELGYC-CYYIHARMAQAHRNRVFHD 238 (351)
Q Consensus 183 ~l~~~l~~~~~~~~lIf~~------~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~ 238 (351)
.+..+++. .+++||.. ....|.++.+.|...++. ...+.=....+.+..+.+.
T Consensus 12 ~v~~~i~~---~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~ 71 (118)
T 2wem_A 12 QLDALVKK---DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDY 71 (118)
T ss_dssp HHHHHHHH---SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHH
T ss_pred HHHHHhcc---CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHH
Confidence 34444544 46999998 478899999999999884 6666555556655555443
No 290
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=27.58 E-value=73 Score=26.87 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=25.1
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEe
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSA 137 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 137 (351)
....++++||+|.+.... ...+..++...+....+++.+.
T Consensus 132 ~~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEeC
Confidence 355799999999875432 3445555566555555555443
No 291
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=27.48 E-value=2.5e+02 Score=22.92 Aligned_cols=84 Identities=14% Similarity=0.243 Sum_probs=44.4
Q ss_pred HHHhhCCceEEEEECCcchHHHHHHHh--CCCcEE--EEccHHHHHHHhccCcCCCCccEEEEccccccc-CcchHHHHH
Q psy13286 46 ELAKHLNVKVMVTTGGTNLRDDIMRIY--QKVHLI--IATPGRILDLMDKQVANMDHCKILVLDEADKLL-SQDFKGMLD 120 (351)
Q Consensus 46 ~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~Il--v~Tp~~l~~~l~~~~~~~~~~~lvViDE~h~~~-~~~~~~~~~ 120 (351)
.+....+.++..+-++......+..+. .+..|. ..+.+..+..+.. ..+++|++|= + |. ..+-...+.
T Consensus 154 ~Lr~~l~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~-----~~~dlvl~D~-~-MPd~mdG~e~~~ 226 (286)
T 3n0r_A 154 EIDAELATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR-----RTPGLVLADI-Q-LADGSSGIDAVK 226 (286)
T ss_dssp HHHTSCCCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-----CCCSEEEEES-C-CTTSCCTTTTTH
T ss_pred hhhccCCCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHh-----CCCCEEEEcC-C-CCCCCCHHHHHH
Confidence 333333455555444444444443332 256665 4455556666653 3468999992 3 44 233223344
Q ss_pred HHHHhCCCCCcEEEEEee
Q psy13286 121 HVISILPHERQILLYSAT 138 (351)
Q Consensus 121 ~~~~~~~~~~~~i~~SaT 138 (351)
.+.... ...++++||.
T Consensus 227 ~ir~~~--~~piI~lT~~ 242 (286)
T 3n0r_A 227 DILGRM--DVPVIFITAF 242 (286)
T ss_dssp HHHHHT--TCCEEEEESC
T ss_pred HHHhcC--CCCEEEEeCC
Confidence 444433 6779999996
No 292
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=27.47 E-value=1.9e+02 Score=21.56 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc
Q psy13286 203 TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 241 (351)
Q Consensus 203 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 241 (351)
...++.+.+.|+.+|+.| ..+..++..+-.+.++.|..
T Consensus 54 ~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 91 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQL 91 (164)
T ss_dssp HHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHH
Confidence 677889999999999997 45667788888888888864
No 293
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=27.28 E-value=55 Score=27.78 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=22.9
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEEe
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSA 137 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 137 (351)
....++||||+|.+..... ..+...+..-+....+++.|.
T Consensus 107 ~~~kvviIdead~l~~~a~-naLLk~lEep~~~~~~Il~t~ 146 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAA-NALLKTLEEPPAETWFFLATR 146 (334)
T ss_dssp SSCEEEEESCGGGBCHHHH-HHHHHHHTSCCTTEEEEEEES
T ss_pred CCcEEEEECchhhcCHHHH-HHHHHHhcCCCCCeEEEEEeC
Confidence 4678999999998765432 233344444333444444443
No 294
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=26.55 E-value=3.2e+02 Score=23.79 Aligned_cols=68 Identities=3% Similarity=0.025 Sum_probs=43.4
Q ss_pred HHHHHHhhCCCCcEEEEeC-c-hH---HHHHHHHHHHhcCCeEEEeccC---CCHHHHHHHHHHhhcCCccEEEEe
Q psy13286 183 CLNTLFSKLQINQSIIFCN-S-TQ---RVELLAKKITELGYCCYYIHAR---MAQAHRNRVFHDFRSGLCRNLVCS 250 (351)
Q Consensus 183 ~l~~~l~~~~~~~~lIf~~-~-~~---~~~~l~~~L~~~~~~~~~~~~~---~~~~~r~~~~~~f~~g~~~ilv~T 250 (351)
.+...++.....+++|.+. . .. ..+.+.+.|+..++.+..+.+. -+.+.-.+..+.+++...+++|+-
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIav 108 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGV 108 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3444455444357777775 2 22 3667788888778877666653 344566677777777777888764
No 295
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=26.54 E-value=1e+02 Score=24.91 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=35.4
Q ss_pred eEEEEcCCH-HHHHHHHHHHHHHH----hhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhc--cCcCCCC
Q psy13286 26 ATLIIVPTR-ELALQTSQICIELA----KHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDK--QVANMDH 98 (351)
Q Consensus 26 ~~lil~P~~-~L~~q~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~ 98 (351)
..+++.++. +++...++.+.+.. ...+.-++.+.||... ..+.+.|.. ..++.++
T Consensus 8 ~~i~i~~~~~~l~~~~A~~i~~~i~~a~~~~~~~~l~LsgGstP------------------~~~y~~L~~~~~~idw~~ 69 (251)
T 3tx2_A 8 TIIEKYADTDALVTAAGDRLASAITGALAERGKAMIVLTGGGTG------------------IALLKHLRDVASGLDWTN 69 (251)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSHHH------------------HHHHHHHHHHHTTSCGGG
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCchH------------------HHHHHHHHhhccCCCCce
Confidence 445566654 44444444433332 2234445555555532 234444433 5677889
Q ss_pred ccEEEEcccc
Q psy13286 99 CKILVLDEAD 108 (351)
Q Consensus 99 ~~lvViDE~h 108 (351)
+..+-+||--
T Consensus 70 v~~f~~DEr~ 79 (251)
T 3tx2_A 70 VHVFWGDDRY 79 (251)
T ss_dssp EEEEESEEES
T ss_pred eEEEeeeecc
Confidence 9999999965
No 296
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=26.47 E-value=2.6e+02 Score=22.69 Aligned_cols=178 Identities=14% Similarity=0.074 Sum_probs=85.4
Q ss_pred ceEEEEcCCHH--HHHHHHHHHHHHHhhCCceEEEEECCcchHHH---HHHH-hCCCcEEEEccHH-----HHHHHhccC
Q psy13286 25 KATLIIVPTRE--LALQTSQICIELAKHLNVKVMVTTGGTNLRDD---IMRI-YQKVHLIIATPGR-----ILDLMDKQV 93 (351)
Q Consensus 25 ~~~lil~P~~~--L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~-~~~~~Ilv~Tp~~-----l~~~l~~~~ 93 (351)
..+-+++|... --.++...+++.+...|+.+...........+ +..+ ..+.+-+|..|.. ....+..
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~~-- 93 (303)
T 3kke_A 16 GTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVLE-- 93 (303)
T ss_dssp -CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHHT--
T ss_pred CEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHHHhC--
Confidence 45666777532 44566677777777778888877766543332 2223 2356645444321 2222322
Q ss_pred cCCCCccEEEEcccc-----cccCcch--H-HHHHHHHHhCCCCCcEEEEEeeCcchH-----HHHHHHhcCCCeEEeec
Q psy13286 94 ANMDHCKILVLDEAD-----KLLSQDF--K-GMLDHVISILPHERQILLYSATFPLTV-----KNFMEKHLKDPYEINLM 160 (351)
Q Consensus 94 ~~~~~~~lvViDE~h-----~~~~~~~--~-~~~~~~~~~~~~~~~~i~~SaT~~~~~-----~~~~~~~~~~~~~~~~~ 160 (351)
.+-+|++|... .+..+++ . .....+.. . ...++.+++....... ..+....-..... .
T Consensus 94 ----~iPvV~i~~~~~~~~~~V~~D~~~~g~~a~~~L~~-~-G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~--~- 164 (303)
T 3kke_A 94 ----GVPAVTINSRVPGRVGSVILDDQKGGGIATEHLIT-L-GHSRIAFISGTAIHDTAQRRKEGYLETLASAGLR--S- 164 (303)
T ss_dssp ----TSCEEEESCCCTTCCCEEEECHHHHHHHHHHHHHH-T-TCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCC--C-
T ss_pred ----CCCEEEECCcCCCCCCEEEECcHHHHHHHHHHHHH-C-CCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCC--C-
Confidence 33456665321 1111111 1 22223333 2 4456777776543211 1111111111000 0
Q ss_pred cccccCCceEEEEEcCcccHHHHHHHH-----HhhCCCCcEEEEeCchHHHHHHHHHHHhcCCe
Q psy13286 161 EELTLKGVTQYYAFVQERQKVHCLNTL-----FSKLQINQSIIFCNSTQRVELLAKKITELGYC 219 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~k~~~l~~~-----l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~ 219 (351)
..............-...+..+ +... +.+.-|||.+...|.-+.+.|++.|+.
T Consensus 165 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~-~~~~ai~~~nd~~A~g~~~al~~~G~~ 222 (303)
T 3kke_A 165 -----EAAWVVDAGWEADAGSAALNTLYRGANLGKP-DGPTAVVVASVNAAVGALSTALRLGLR 222 (303)
T ss_dssp -----CGGGEEECCSSHHHHHHHHHHHHHHHCTTST-TSCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred -----CcceEEecCCChHHHHHHHHHhcchhhhcCC-CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 0000111111222344556666 5543 457889999999999898998877654
No 297
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=26.41 E-value=63 Score=26.79 Aligned_cols=37 Identities=3% Similarity=0.011 Sum_probs=28.4
Q ss_pred CCCcEEEEeCc--hH-HHHHHHHHHHhcCC-eEEEeccCCC
Q psy13286 192 QINQSIIFCNS--TQ-RVELLAKKITELGY-CCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~--~~-~~~~l~~~L~~~~~-~~~~~~~~~~ 228 (351)
+..+++|||.+ -. .+.+++..|+..|+ ++..+.|++.
T Consensus 91 ~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~ 131 (296)
T 1rhs_A 91 NDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFR 131 (296)
T ss_dssp TTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHH
Confidence 45678999987 33 47788999999998 5888888754
No 298
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=26.40 E-value=1.4e+02 Score=25.04 Aligned_cols=48 Identities=17% Similarity=0.292 Sum_probs=38.1
Q ss_pred CCcEEEEeCc-------------hHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc
Q psy13286 193 INQSIIFCNS-------------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 241 (351)
Q Consensus 193 ~~~~lIf~~~-------------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 241 (351)
.+-+||+.+. ...++.+++.|+.+|+.|. .+..++..+-.+.++.|..
T Consensus 60 rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 120 (310)
T 2nn3_C 60 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAE 120 (310)
T ss_dssp CCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHS
T ss_pred cCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHH
Confidence 3557777653 6788999999999999974 5567888888888888865
No 299
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=26.36 E-value=2.6e+02 Score=22.62 Aligned_cols=182 Identities=11% Similarity=0.053 Sum_probs=89.6
Q ss_pred CceEEEEcCCH--HHHHHHHHHHHHHHhhCCceEEEEE-CCcchHHHH---HH-HhCCCcEEEEccH------HHHHHHh
Q psy13286 24 SKATLIIVPTR--ELALQTSQICIELAKHLNVKVMVTT-GGTNLRDDI---MR-IYQKVHLIIATPG------RILDLMD 90 (351)
Q Consensus 24 ~~~~lil~P~~--~L~~q~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~---~~-~~~~~~Ilv~Tp~------~l~~~l~ 90 (351)
++++.+++|.. .--.++.+.+++.+...|..+.... .......+. .. ...+.+-+|..|. ...+.+.
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 83 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKAV 83 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHHH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHH
Confidence 35667777654 3455566667777777788887743 333333222 22 2235675554432 1222222
Q ss_pred ccCcCCCCccEEEEcccc-------cccCcc---hHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCeEEeec
Q psy13286 91 KQVANMDHCKILVLDEAD-------KLLSQD---FKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM 160 (351)
Q Consensus 91 ~~~~~~~~~~lvViDE~h-------~~~~~~---~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 160 (351)
. ..+-+|.+|... .+...+ .......+...++...++.+++..-..........+..- .
T Consensus 84 ~-----~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~-l----- 152 (305)
T 3g1w_A 84 D-----AGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKET-L----- 152 (305)
T ss_dssp H-----TTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHH-H-----
T ss_pred H-----CCCcEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHHH-H-----
Confidence 2 223355555321 111111 223445566666666677777754221111111111100 0
Q ss_pred cccccCCceEE-EEEc--CcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCC
Q psy13286 161 EELTLKGVTQY-YAFV--QERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY 218 (351)
Q Consensus 161 ~~~~~~~~~~~-~~~~--~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~ 218 (351)
... ....... .... ....-...+..++...+ ....|||.+...+.-+.+.|+..|+
T Consensus 153 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~~~d~~a~g~~~al~~~g~ 211 (305)
T 3g1w_A 153 EAE-FPAIEVIAVEDGRGDSLHSRRVAHQLLEDYP-NLAGIFATEANGGVGVGDAVRLESR 211 (305)
T ss_dssp HHH-CTTEEEEEEEECTTCHHHHHHHHHHHHHHCT-TEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred Hhh-CCCCEEEEEecCCCCHHHHHHHHHHHHHhCC-CceEEEECCCcchhhHHHHHHhcCC
Confidence 000 0001111 1111 12234566677777654 6789999999999999999988775
No 300
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=25.89 E-value=93 Score=30.04 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=38.8
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH--HHHhCCCcEEEEcc
Q psy13286 24 SKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI--MRIYQKVHLIIATP 82 (351)
Q Consensus 24 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~Ilv~Tp 82 (351)
+..+||.+.|++-++.+...+ ...++++..++|....++.. ........|+|+|.
T Consensus 474 gqpVLVFt~S~e~sE~Ls~~L----~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g~VtVATd 530 (822)
T 3jux_A 474 GQPVLVGTTSIEKSELLSSML----KKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATN 530 (822)
T ss_dssp TCCEEEEESSHHHHHHHHHHH----HTTTCCCEEECSCHHHHHHHHHHHHHSTTCEEEEET
T ss_pred CCCEEEEECCHHHHHHHHHHH----HHCCCCEEEeeCCchHHHHHHHHhCCCCCeEEEEcc
Confidence 357999999999987666655 44588999999985443321 22334568999996
No 301
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=25.86 E-value=92 Score=28.21 Aligned_cols=69 Identities=13% Similarity=0.067 Sum_probs=40.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcC----CeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc------CCCCCCCCCC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELG----YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL------FTRGIDVQAV 262 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~------~~~G~di~~~ 262 (351)
+.++|+.++++.-+...++.++..+ ..+....++.... -.....+|+|+|.. ....+++.++
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~ 260 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK--------GAKIDAQIVIGTPGTVMDLMKRRQLDARDI 260 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc--------cccCCCCEEEECHHHHHHHHHcCCccccCC
Confidence 4589999999999999999988763 2222222222111 11236789999952 1234566677
Q ss_pred CEEEEec
Q psy13286 263 NVVINFD 269 (351)
Q Consensus 263 ~~Vi~~~ 269 (351)
++||.-.
T Consensus 261 ~lIIiDE 267 (508)
T 3fho_A 261 KVFVLDE 267 (508)
T ss_dssp CEEEECC
T ss_pred CEEEEec
Confidence 7776533
No 302
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=25.80 E-value=71 Score=22.68 Aligned_cols=56 Identities=11% Similarity=0.091 Sum_probs=31.6
Q ss_pred ceEEEEcCCHHHHHHH-HHHHHHHHhhCCc-eEEEEECCcchHHHHHHHhCCCcEEEEccHHHH
Q psy13286 25 KATLIIVPTRELALQT-SQICIELAKHLNV-KVMVTTGGTNLRDDIMRIYQKVHLIIATPGRIL 86 (351)
Q Consensus 25 ~~~lil~P~~~L~~q~-~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~ 86 (351)
.+++++|++=-=..++ ...+++.++..++ .+........... ...+++|+|++--.
T Consensus 14 kkIlvVC~sGmgTS~ml~~klkk~~~e~gi~~~~V~~~~i~e~~------~~~DlIist~~l~~ 71 (125)
T 1vkr_A 14 RKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNLP------PDVDLVITHRDLTE 71 (125)
T ss_dssp CEEEECCSSSSHHHHHHHHHHHHHHHHTTCTTSEEEECCTTCCC------TTCSEEEEEHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHCCCceEEEEEeeHHHCC------CCCCEEEECCccch
Confidence 5899999964444444 3566666665565 3322222221111 25899999987543
No 303
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=25.80 E-value=55 Score=27.50 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=21.3
Q ss_pred cEEEEcccccccC------cchHHHHHHHHHhCCCCCcEEEEEee
Q psy13286 100 KILVLDEADKLLS------QDFKGMLDHVISILPHERQILLYSAT 138 (351)
Q Consensus 100 ~lvViDE~h~~~~------~~~~~~~~~~~~~~~~~~~~i~~SaT 138 (351)
-+||+||+|.+.. ..+...+..+.... .+..+ +++++
T Consensus 130 ~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~-il~g~ 172 (350)
T 2qen_A 130 FIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL-PNLKI-ILTGS 172 (350)
T ss_dssp EEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-TTEEE-EEEES
T ss_pred EEEEEeCHHHHhccCccchhhHHHHHHHHHHhc-CCeEE-EEECC
Confidence 4899999998764 23444555554444 23334 44443
No 304
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=25.80 E-value=63 Score=29.64 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=31.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCCeEEEecc-CCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHA-RMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~ 228 (351)
++.++++||.+-..+...+..|+..|+.+..+.| ++.
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~~ 358 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEA 358 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCChH
Confidence 3578999999887888888999999999999998 764
No 305
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=25.63 E-value=91 Score=31.24 Aligned_cols=49 Identities=8% Similarity=0.009 Sum_probs=39.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc--CCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSD 251 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 251 (351)
.+.++||.++++.-+...++.++.. +..+..++|+.+. ++..+|+|+|+
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~-----------~~~~~IlV~Tp 131 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQI-----------NPDANCLIMTT 131 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCEE-----------CTTSSEEEEEH
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcc-----------CCCCCEEEECH
Confidence 4578999999999999999999886 5688899998752 35577888885
No 306
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=25.54 E-value=48 Score=27.13 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=11.0
Q ss_pred ccEEEEccccccc
Q psy13286 99 CKILVLDEADKLL 111 (351)
Q Consensus 99 ~~lvViDE~h~~~ 111 (351)
.+++++||+|.+.
T Consensus 111 ~~vl~iDEid~l~ 123 (285)
T 3h4m_A 111 PSIIFIDEIDAIA 123 (285)
T ss_dssp SEEEEEETTHHHH
T ss_pred CeEEEEECHHHhc
Confidence 4699999999874
No 307
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=25.39 E-value=65 Score=27.46 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=22.4
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 97 DHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 97 ~~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
....++|+||+|.+.... ...+...+...+....+++.|
T Consensus 118 ~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 445799999999875443 233444444444444444443
No 308
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=25.33 E-value=85 Score=27.22 Aligned_cols=38 Identities=13% Similarity=0.024 Sum_probs=29.0
Q ss_pred CCCcEEEEe-Cch-HHHHHHHHHHHhcCCeEEEeccCCCH
Q psy13286 192 QINQSIIFC-NST-QRVELLAKKITELGYCCYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~-~~~-~~~~~l~~~L~~~~~~~~~~~~~~~~ 229 (351)
+..+++||| .+- ..+.+++..|+..|+++..+.|++..
T Consensus 94 ~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~a 133 (373)
T 1okg_A 94 GELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQA 133 (373)
T ss_dssp SSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHHH
Confidence 457899999 433 34448888999999999999998754
No 309
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=25.33 E-value=2.2e+02 Score=21.72 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=37.7
Q ss_pred CCcEEEEeCc--------------hHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc
Q psy13286 193 INQSIIFCNS--------------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 241 (351)
Q Consensus 193 ~~~~lIf~~~--------------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 241 (351)
.+.+|||.+. ...++.+.+.|+.+|+.|..+ ..++..+-.+.++.|..
T Consensus 44 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~-~dlt~~em~~~l~~~~~ 105 (179)
T 3p45_A 44 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCF-NDLKAEELLLKIHEVST 105 (179)
T ss_dssp CCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHT
T ss_pred cCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHHHhh
Confidence 4667888764 357899999999999998554 56888888888888865
No 310
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=24.89 E-value=1e+02 Score=24.87 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=16.8
Q ss_pred HHHHHhc--cCcCCCCccEEEEcccc
Q psy13286 85 ILDLMDK--QVANMDHCKILVLDEAD 108 (351)
Q Consensus 85 l~~~l~~--~~~~~~~~~lvViDE~h 108 (351)
+.+.|.. ..++.+++..+-+||--
T Consensus 54 ~y~~L~~~~~~idw~~v~~f~~DEr~ 79 (248)
T 3oc6_A 54 LLKRVRERSGEIDWSKVHIYWGDERF 79 (248)
T ss_dssp HHHHHHHTGGGSCGGGEEEEESEEEC
T ss_pred HHHHHHhhccCCCcceEEEEEeeecc
Confidence 4444443 55678899999999964
No 311
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=24.72 E-value=1.6e+02 Score=23.53 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=36.1
Q ss_pred EEEcCCHH-HHHHHHHHHHHHHhhCCceEEEEECCcchHHHHHHHhCCCcEEEEccHHHHHHHhccC----cCCCCccEE
Q psy13286 28 LIIVPTRE-LALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQV----ANMDHCKIL 102 (351)
Q Consensus 28 lil~P~~~-L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~----~~~~~~~lv 102 (351)
+++.++.+ ++...++.+.+.....+-.++.+.||... ..+.+.|.... ++.+++..+
T Consensus 4 ~~~~~~~~~l~~~aA~~i~~~i~~~~~~~l~lsgGstp------------------~~~~~~L~~~~~~~~~~w~~v~~f 65 (238)
T 1y89_A 4 HKIFPTADAVVKSLADDMLAYSQQGQPVHISLSGGSTP------------------KMLFKLLASQPYANDIQWKNLHFW 65 (238)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTSSCEEEEECCSHHH------------------HHHHHHHTSTTHHHHSCGGGEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHhCCCEEEEECCCccH------------------HHHHHHHHhhhhccCCChhHeEEE
Confidence 45566654 66667777766655433445555555533 33444443322 566788888
Q ss_pred EEcccc
Q psy13286 103 VLDEAD 108 (351)
Q Consensus 103 ViDE~h 108 (351)
-+||--
T Consensus 66 ~~DEr~ 71 (238)
T 1y89_A 66 WGDERC 71 (238)
T ss_dssp ESEEES
T ss_pred eceecC
Confidence 888854
No 312
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=24.70 E-value=2.8e+02 Score=22.40 Aligned_cols=59 Identities=10% Similarity=0.023 Sum_probs=41.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCH-HHHHHHHHHhhc--CCccEEEEeC
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQ-AHRNRVFHDFRS--GLCRNLVCSD 251 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-~~r~~~~~~f~~--g~~~ilv~T~ 251 (351)
+.++++.-.+.+.+++.++.+...+..+..+..+.+. ++-++.++...+ |.+++||..-
T Consensus 33 Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 33 GARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence 3456666666777888999999888888888888754 333344444332 7899999864
No 313
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=24.54 E-value=57 Score=30.24 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=32.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCH
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQ 229 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 229 (351)
..++++||.+-..+...+..|+..|+.+..+.|++..
T Consensus 541 ~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~~ 577 (588)
T 3ics_A 541 DKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFKL 577 (588)
T ss_dssp SSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHHH
T ss_pred CCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHHH
Confidence 4679999999889999999999999998899998754
No 314
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=24.49 E-value=2.7e+02 Score=22.15 Aligned_cols=176 Identities=11% Similarity=-0.000 Sum_probs=86.7
Q ss_pred ceEEEEcCCH--HHHHHHHHHHHHHHhhCCceEEEEECCcch---HHHHHHH-hCCCcEEEEccHHH-HHHHhccCcCCC
Q psy13286 25 KATLIIVPTR--ELALQTSQICIELAKHLNVKVMVTTGGTNL---RDDIMRI-YQKVHLIIATPGRI-LDLMDKQVANMD 97 (351)
Q Consensus 25 ~~~lil~P~~--~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~-~~~~~Ilv~Tp~~l-~~~l~~~~~~~~ 97 (351)
..+-+++|.. .--.++...+++.+...|..+...... .. ...+..+ ..+.+-+| .+... ...+.. .
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI-~~~~~~~~~~~~-----~ 78 (280)
T 3gyb_A 6 QLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII-IAQDIPDFTVPD-----S 78 (280)
T ss_dssp CEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE-EESCC-------------
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE-ecCCCChhhHhh-----c
Confidence 5666777653 345666777778888889888877766 32 2223333 34666555 33222 222221 4
Q ss_pred CccEEEEcccc-c------ccCcc--hHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhc----CCCeEEeeccccc
Q psy13286 98 HCKILVLDEAD-K------LLSQD--FKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL----KDPYEINLMEELT 164 (351)
Q Consensus 98 ~~~lvViDE~h-~------~~~~~--~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~----~~~~~~~~~~~~~ 164 (351)
.+-+|++|... . +..++ ........+... ...++.+++..... .......+. ........ .
T Consensus 79 ~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~-G~~~i~~i~~~~~~-~~~R~~gf~~~l~~~~~~~~~--~-- 152 (280)
T 3gyb_A 79 LPPFVIAGTRITQASTHDSVANDDFRGAEIATKHLIDL-GHTHIAHLRVGSGA-GLRRFESFEATMRAHGLEPLS--N-- 152 (280)
T ss_dssp CCCEEEESCCCSSSCSTTEEEECHHHHHHHHHHHHHHT-TCCSEEEECCSSHH-HHHHHHHHHHHHHHTTCCCEE--C--
T ss_pred CCCEEEECCCCCCCCCCCEEEechHHHHHHHHHHHHHC-CCCeEEEEeCCCch-HHHHHHHHHHHHHHcCcCCCc--c--
Confidence 55677776533 1 00111 112222222222 44567777765443 222221111 00000000 0
Q ss_pred cCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCe
Q psy13286 165 LKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC 219 (351)
Q Consensus 165 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~ 219 (351)
..........-...+..++...+ .+..|||.+...|..+.+.|++.|+.
T Consensus 153 -----~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~~~d~~a~g~~~al~~~g~~ 201 (280)
T 3gyb_A 153 -----DYLGPAVEHAGYTETLALLKEHP-EVTAIFSSNDITAIGALGAARELGLR 201 (280)
T ss_dssp -----CCCSCCCHHHHHHHHHHHHHHCT-TCCEEEESSHHHHHHHHHHHHHHTCC
T ss_pred -----cccCCCCHHHHHHHHHHHHhCCC-CCCEEEECChHHHHHHHHHHHHcCCC
Confidence 00001112234556677777654 56788999999999998888877653
No 315
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=24.34 E-value=65 Score=23.63 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=24.5
Q ss_pred CCCcEEEEeC-chHHHHHHHHHH--------HhcCC-eEEEeccCCCH
Q psy13286 192 QINQSIIFCN-STQRVELLAKKI--------TELGY-CCYYIHARMAQ 229 (351)
Q Consensus 192 ~~~~~lIf~~-~~~~~~~l~~~L--------~~~~~-~~~~~~~~~~~ 229 (351)
+..++++||. +-..+...+..| +..|+ ++..+.|++..
T Consensus 84 ~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~ 131 (152)
T 1t3k_A 84 DKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNG 131 (152)
T ss_dssp SCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHH
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHH
Confidence 3457888897 544444444444 33687 68899999864
No 316
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=24.27 E-value=1.6e+02 Score=24.74 Aligned_cols=49 Identities=10% Similarity=0.090 Sum_probs=38.8
Q ss_pred CCCcEEEEeCc------------hHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc
Q psy13286 192 QINQSIIFCNS------------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 241 (351)
Q Consensus 192 ~~~~~lIf~~~------------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 241 (351)
+.+-+||+.+. ...++.+++.|+.+|+.| ..+..++..+-.+.++.|..
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~ 120 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTI-FPYGNVNQDQFFKLLTMVTS 120 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEE-EEECSCCHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEccCCCHHHHHHHHHHHHH
Confidence 34567887765 278899999999999997 45678888888888888864
No 317
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=24.04 E-value=89 Score=26.21 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=12.2
Q ss_pred CccEEEEcccccccC
Q psy13286 98 HCKILVLDEADKLLS 112 (351)
Q Consensus 98 ~~~lvViDE~h~~~~ 112 (351)
..++|++||+|.+..
T Consensus 110 ~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 110 KPSIIFIDQVDALTG 124 (322)
T ss_dssp SSEEEEEECGGGGSC
T ss_pred CCeEEEechhhhhhc
Confidence 447999999998865
No 318
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=23.52 E-value=1.8e+02 Score=19.93 Aligned_cols=70 Identities=10% Similarity=0.041 Sum_probs=33.6
Q ss_pred cHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc----CCccEEEEeC
Q psy13286 179 QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS----GLCRNLVCSD 251 (351)
Q Consensus 179 ~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~ilv~T~ 251 (351)
.....+...+....+...+..+.+..++... +......+.++.-.++...-.+.++.++. ....+++.|+
T Consensus 19 ~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~---l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 92 (143)
T 3cnb_A 19 EFADMLTQFLENLFPYAKIKIAYNPFDAGDL---LHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTG 92 (143)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECSHHHHHHH---HHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEES
T ss_pred HHHHHHHHHHHhccCccEEEEECCHHHHHHH---HHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeC
Confidence 3344555555542333435555555444332 33345566666655554434445555544 2345555554
No 319
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=22.94 E-value=1.7e+02 Score=24.17 Aligned_cols=48 Identities=13% Similarity=0.251 Sum_probs=38.0
Q ss_pred CCcEEEEeCc--------------hHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc
Q psy13286 193 INQSIIFCNS--------------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 241 (351)
Q Consensus 193 ~~~~lIf~~~--------------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 241 (351)
.+-+||+++. ...++.+.+.|+.+|+.|. .+..++..+-.+.++.|..
T Consensus 21 rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 82 (278)
T 3od5_A 21 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVST 82 (278)
T ss_dssp CCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred cCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 4567888764 3688999999999999975 4567888888888888865
No 320
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=22.67 E-value=2.8e+02 Score=23.01 Aligned_cols=69 Identities=9% Similarity=0.136 Sum_probs=34.7
Q ss_pred HHHHHHHhhCC---ceEEEEECCcchHHH-----H-HH-H-hCCCcEEEEccHHHHHHHhccCc---------CCCCccE
Q psy13286 42 QICIELAKHLN---VKVMVTTGGTNLRDD-----I-MR-I-YQKVHLIIATPGRILDLMDKQVA---------NMDHCKI 101 (351)
Q Consensus 42 ~~~~~~~~~~~---~~v~~~~~~~~~~~~-----~-~~-~-~~~~~Ilv~Tp~~l~~~l~~~~~---------~~~~~~l 101 (351)
..+.++....+ ...+.++|.....+. + .. . ..+..+++.+...+...+..... .+...++
T Consensus 138 ~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l 217 (308)
T 2qgz_A 138 SAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPV 217 (308)
T ss_dssp HHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSE
T ss_pred HHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCE
Confidence 34444554321 356677776553222 1 11 1 34566665555555444432110 1245689
Q ss_pred EEEcccccc
Q psy13286 102 LVLDEADKL 110 (351)
Q Consensus 102 vViDE~h~~ 110 (351)
||+||++..
T Consensus 218 LiiDdig~~ 226 (308)
T 2qgz_A 218 LILDDIGAE 226 (308)
T ss_dssp EEEETCCC-
T ss_pred EEEcCCCCC
Confidence 999999643
No 321
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=22.62 E-value=26 Score=30.18 Aligned_cols=13 Identities=46% Similarity=0.480 Sum_probs=10.9
Q ss_pred CccEEEEcccccc
Q psy13286 98 HCKILVLDEADKL 110 (351)
Q Consensus 98 ~~~lvViDE~h~~ 110 (351)
...++|+||+|.+
T Consensus 125 ~~~vlilDE~~~l 137 (389)
T 1fnn_A 125 LYMFLVLDDAFNL 137 (389)
T ss_dssp CCEEEEEETGGGS
T ss_pred CeEEEEEECcccc
Confidence 3468999999987
No 322
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=22.24 E-value=3.3e+02 Score=22.46 Aligned_cols=179 Identities=11% Similarity=0.138 Sum_probs=87.9
Q ss_pred ceEEEEcCC----HHHHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHH-hCCCcEEEEccH-----HHHHHHhc
Q psy13286 25 KATLIIVPT----RELALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRI-YQKVHLIIATPG-----RILDLMDK 91 (351)
Q Consensus 25 ~~~lil~P~----~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~-~~~~~Ilv~Tp~-----~l~~~l~~ 91 (351)
..+-+++|. ..--.++...+.+.+...|+.+...........+. ..+ ..+.+-+|..|. .+...+..
T Consensus 62 ~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 141 (338)
T 3dbi_A 62 QTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDA 141 (338)
T ss_dssp SEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHH
T ss_pred CEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHHc
Confidence 566677776 23445566667777777898888877665543332 222 345665555442 23333332
Q ss_pred cCcCCCCccEEEEccc------ccccCcchH---HHHHHHHHhCCCCCcEEEEEeeCcchH-----HHHHHHhcCCCeEE
Q psy13286 92 QVANMDHCKILVLDEA------DKLLSQDFK---GMLDHVISILPHERQILLYSATFPLTV-----KNFMEKHLKDPYEI 157 (351)
Q Consensus 92 ~~~~~~~~~lvViDE~------h~~~~~~~~---~~~~~~~~~~~~~~~~i~~SaT~~~~~-----~~~~~~~~~~~~~~ 157 (351)
. .+-+|++|.. +.+..+++. .....+.. . ...++.+++....... ..+....-.....
T Consensus 142 ~-----~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~-~-G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~- 213 (338)
T 3dbi_A 142 H-----SQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELIN-A-GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIA- 213 (338)
T ss_dssp C-----SSCEEEESSCCSSSGGGEECBCHHHHHHHHHHHHHH-T-TCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCC-
T ss_pred C-----CCCEEEEcCCCCCCCCCEEEEChHHHHHHHHHHHHH-C-CCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCC-
Confidence 2 2335666532 111112211 12223333 2 4456777766543221 1111111101000
Q ss_pred eeccccccCCceEEEEEcCcccHHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCCe
Q psy13286 158 NLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC 219 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~ 219 (351)
.... ...........-...+..++... +.+..|||.+...|.-+.+.|++.|+.
T Consensus 214 -~~~~------~~~~~~~~~~~~~~~~~~ll~~~-~~~~ai~~~nd~~A~g~~~al~~~G~~ 267 (338)
T 3dbi_A 214 -LNEK------LIANGKWTPASGAEGVEMLLERG-AKFSALVASNDDMAIGAMKALHERGVA 267 (338)
T ss_dssp -CCGG------GEECCCSSHHHHHHHHHHHHHTT-CCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred -CCcc------eEEeCCCCHHHHHHHHHHHHcCC-CCCeEEEECChHHHHHHHHHHHHcCCC
Confidence 0000 00000112233455666777654 367889999999998898998877654
No 323
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=22.08 E-value=61 Score=29.76 Aligned_cols=37 Identities=11% Similarity=0.285 Sum_probs=30.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCC-eEEEeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 228 (351)
+..++++||.+-..+.+.+..|+..|+ ++..+.|++.
T Consensus 62 ~~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~~ 99 (539)
T 1yt8_A 62 RDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLS 99 (539)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCHH
Confidence 457899999987889999999999998 5888888653
No 324
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.02 E-value=1.8e+02 Score=19.23 Aligned_cols=49 Identities=8% Similarity=0.170 Sum_probs=33.2
Q ss_pred EEEeCchHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCCccEE
Q psy13286 197 IIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNL 247 (351)
Q Consensus 197 lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~il 247 (351)
++|....+...++...+++.|+.+....+ |++.+..+.+..+.-...|+
T Consensus 6 vvfstdeetlrkfkdiikkngfkvrtvrs--pqelkdsieelvkkynativ 54 (134)
T 2l69_A 6 VVFSTDEETLRKFKDIIKKNGFKVRTVRS--PQELKDSIEELVKKYNATIV 54 (134)
T ss_dssp EECCCCHHHHHHHHHHHHHTTCEEEEECS--HHHHHHHHHHHTTCCCCEEE
T ss_pred EEEeCCHHHHHHHHHHHHhcCceEEEecC--HHHHHHHHHHHHHHhCCeEE
Confidence 44555566777888899999999887665 66666666666655444443
No 325
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=21.92 E-value=3.1e+02 Score=21.93 Aligned_cols=184 Identities=10% Similarity=0.071 Sum_probs=88.7
Q ss_pred ceEEEEcCCHH--HHHHHHHHHHHHHhhCCceEEEEECCcchHHHH---HHH-hCCCcEEEEccH---------HHHHHH
Q psy13286 25 KATLIIVPTRE--LALQTSQICIELAKHLNVKVMVTTGGTNLRDDI---MRI-YQKVHLIIATPG---------RILDLM 89 (351)
Q Consensus 25 ~~~lil~P~~~--L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~-~~~~~Ilv~Tp~---------~l~~~l 89 (351)
..+-+++|... --.++.+.+++.+...|..+...........+. ..+ ..+.+-+|..|. .....+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~ 95 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNL 95 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHH
Confidence 56667777532 455666777777777899888887665543332 222 346665555442 223333
Q ss_pred hccCcCCCCccEEEEcccc------cccCcc--hHHHHHHHHHhCCCCCcEEEEEeeCcchHHHHHHHhcCCCeEEeecc
Q psy13286 90 DKQVANMDHCKILVLDEAD------KLLSQD--FKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLME 161 (351)
Q Consensus 90 ~~~~~~~~~~~lvViDE~h------~~~~~~--~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 161 (351)
... .+-+|++|... .+..++ ........+... ...++.+++.........-...+... .. - .
T Consensus 96 ~~~-----~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~-G~~~i~~i~~~~~~~~~~R~~gf~~~-l~--~-~ 165 (298)
T 3tb6_A 96 EKN-----GIPFAMINASYAELAAPSFTLDDVKGGMMAAEHLLSL-GHTHMMGIFKADDTQGVKRMNGFIQA-HR--E-R 165 (298)
T ss_dssp HHT-----TCCEEEESSCCTTCSSCEEEECHHHHHHHHHHHHHHT-TCCSEEEEEESSSHHHHHHHHHHHHH-HH--H-T
T ss_pred Hhc-----CCCEEEEecCcCCCCCCEEEeCcHHHHHHHHHHHHHC-CCCcEEEEcCCCCccHHHHHHHHHHH-HH--H-c
Confidence 222 23345555321 111111 112222222222 34456666664332111111111100 00 0 0
Q ss_pred ccccCCceEEEEEc-Ccc-c-HHHHHHHHHhhCCCC-cEEEEeCchHHHHHHHHHHHhcCCe
Q psy13286 162 ELTLKGVTQYYAFV-QER-Q-KVHCLNTLFSKLQIN-QSIIFCNSTQRVELLAKKITELGYC 219 (351)
Q Consensus 162 ~~~~~~~~~~~~~~-~~~-~-k~~~l~~~l~~~~~~-~~lIf~~~~~~~~~l~~~L~~~~~~ 219 (351)
..... ........ ... . -...+..++...+.. +..|||.+...+.-+.+.|++.|+.
T Consensus 166 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 166 ELFPS-PDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp TCCCC-GGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred CCCCC-cceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 00000 00111111 111 1 256777888876643 7889999999999999999887654
No 326
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=21.81 E-value=97 Score=25.97 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=22.5
Q ss_pred cEEEEcccccccC---cchHHHHHHHHHhCCCCCcEEEEEee
Q psy13286 100 KILVLDEADKLLS---QDFKGMLDHVISILPHERQILLYSAT 138 (351)
Q Consensus 100 ~lvViDE~h~~~~---~~~~~~~~~~~~~~~~~~~~i~~SaT 138 (351)
-+||+||+|.+.. ..+...+..+.... .+. .++++++
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~i~~g~ 178 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRI-KFIMSGS 178 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTE-EEEEEES
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcC-CCe-EEEEEcC
Confidence 4899999998764 34555666665543 233 3444444
No 327
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=21.74 E-value=2.3e+02 Score=23.20 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcC
Q psy13286 203 TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG 242 (351)
Q Consensus 203 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 242 (351)
...++.+++.|+.+|+.|. .+.+++..+-.+.++.|...
T Consensus 55 ~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 55 NVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCCEEE-EecCcCHHHHHHHHHHHHHh
Confidence 7788999999999999974 55678888888888988653
No 328
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=21.62 E-value=2.1e+02 Score=20.88 Aligned_cols=74 Identities=12% Similarity=0.188 Sum_probs=46.7
Q ss_pred chHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhcCC---ccEEEEeCcCCCCCCCCCCCEEEEecCCCChhhHh
Q psy13286 202 STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGL---CRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYL 278 (351)
Q Consensus 202 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~ilv~T~~~~~G~di~~~~~Vi~~~~p~s~~~~~ 278 (351)
+...++.+.+.|+.+|+.+. .+..++..+-.+.++.|.+.. .+.+|+ -.+++|.. ..|+-.|.+.+....+
T Consensus 39 t~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~dh~~~dc~vv-~ilSHG~~----g~i~g~D~~~~l~~i~ 112 (146)
T 2dko_A 39 TDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKEDHSKRSSFVC-VLLSHGEE----GIIFGTNGPVDLKKIT 112 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHSCCTTEEEEEE-EEESCEET----TEEEETTEEEEHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHHhhcCCCCeEEE-EeccCCCC----CEEEEeCCcEeHHHHH
Confidence 35578899999999999975 455688888888888886532 222322 13344532 3555555555556665
Q ss_pred hhc
Q psy13286 279 HRI 281 (351)
Q Consensus 279 q~~ 281 (351)
..+
T Consensus 113 ~~F 115 (146)
T 2dko_A 113 NFF 115 (146)
T ss_dssp HTT
T ss_pred HHh
Confidence 544
No 329
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=21.57 E-value=2.6e+02 Score=20.93 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHhhc
Q psy13286 203 TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 241 (351)
Q Consensus 203 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 241 (351)
...++.+.+.|+.+|+.+ ..+..++..+-.+.++.|.+
T Consensus 57 ~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 57 DVDHSTLVTLFKLLGYDV-HVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp HHHHHHHHHHHHHTTEEE-EEEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHhhh
Confidence 348889999999999997 55677888888888888866
No 330
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=21.51 E-value=67 Score=24.78 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=11.6
Q ss_pred CccEEEEccccccc
Q psy13286 98 HCKILVLDEADKLL 111 (351)
Q Consensus 98 ~~~lvViDE~h~~~ 111 (351)
.+++|++||++.+.
T Consensus 81 ~~dvViIDEaqfl~ 94 (191)
T 1xx6_A 81 DTEVIAIDEVQFFD 94 (191)
T ss_dssp TCSEEEECSGGGSC
T ss_pred cCCEEEEECCCCCC
Confidence 57999999999643
No 331
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=21.06 E-value=62 Score=28.04 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=11.6
Q ss_pred ccEEEEcccccccC
Q psy13286 99 CKILVLDEADKLLS 112 (351)
Q Consensus 99 ~~lvViDE~h~~~~ 112 (351)
.-+||+||+|.+..
T Consensus 139 ~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 139 YLLVILDEFQSMLS 152 (412)
T ss_dssp EEEEEEESTHHHHS
T ss_pred eEEEEEeCHHHHhh
Confidence 45899999998865
No 332
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=20.78 E-value=26 Score=17.14 Aligned_cols=9 Identities=44% Similarity=0.752 Sum_probs=6.4
Q ss_pred hccccccCC
Q psy13286 280 RIGRSGRYG 288 (351)
Q Consensus 280 ~~GR~gR~~ 288 (351)
-.||+||.+
T Consensus 8 ~~~RtGRRN 16 (26)
T 1cmk_I 8 ASGRTGRRN 16 (26)
T ss_pred hcCcccccc
Confidence 358888874
No 333
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.67 E-value=65 Score=26.69 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=23.4
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhCCCCCcEEEEE
Q psy13286 98 HCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYS 136 (351)
Q Consensus 98 ~~~lvViDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 136 (351)
+..++|+||+|.+.... ...+..++...+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 46799999999875433 233445555555555555544
No 334
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=20.29 E-value=62 Score=27.03 Aligned_cols=48 Identities=13% Similarity=0.020 Sum_probs=34.8
Q ss_pred HHHHHHHhh---CCCCcEEEEeCchHHHHHHHHHHHhcCC-eEEEeccCCCH
Q psy13286 182 HCLNTLFSK---LQINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMAQ 229 (351)
Q Consensus 182 ~~l~~~l~~---~~~~~~lIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~ 229 (351)
+.+...+.. .+..++++||.+=..+...+..|...|+ ++..+.|++..
T Consensus 240 ~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~ 291 (302)
T 3olh_A 240 EEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVE 291 (302)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHH
T ss_pred HHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHH
Confidence 344444443 2356899999987777788888999998 67888888654
No 335
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=20.24 E-value=60 Score=27.36 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=34.5
Q ss_pred HHHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHh-cCCe-EEEeccCCC
Q psy13286 183 CLNTLFSKL-QINQSIIFCNSTQRVELLAKKITE-LGYC-CYYIHARMA 228 (351)
Q Consensus 183 ~l~~~l~~~-~~~~~lIf~~~~~~~~~l~~~L~~-~~~~-~~~~~~~~~ 228 (351)
.+...+... +..++++||.+=..+...+..|.+ .|+. +..+.|++.
T Consensus 248 ~l~~~~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~ 296 (318)
T 3hzu_A 248 ELERLYDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWT 296 (318)
T ss_dssp HHHHHTTTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHH
T ss_pred HHHHHhcCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 344444333 356899999998899999999987 8884 888999864
No 336
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=20.16 E-value=83 Score=27.75 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=31.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCC-eEEEeccCCC
Q psy13286 192 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 228 (351)
Q Consensus 192 ~~~~~lIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 228 (351)
+..++++||.+=..+...+..|+..|+ ++..+.|++.
T Consensus 357 ~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~ 394 (423)
T 2wlr_A 357 PEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWY 394 (423)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHH
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHH
Confidence 456789999998888888899999998 5888988764
No 337
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=20.13 E-value=75 Score=28.50 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=31.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCCe-EEEeccCCCH
Q psy13286 193 INQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQ 229 (351)
Q Consensus 193 ~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~ 229 (351)
..++++||.+-..+...+..|+..|+. +..+.|++..
T Consensus 427 ~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~~ 464 (474)
T 3tp9_A 427 DGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEA 464 (474)
T ss_dssp SSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHHH
Confidence 568999999999999999999999984 8889888653
No 338
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=20.02 E-value=89 Score=20.37 Aligned_cols=34 Identities=6% Similarity=-0.056 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCeEEEeccCCCHHHHHHHHHHh
Q psy13286 206 VELLAKKITELGYCCYYIHARMAQAHRNRVFHDF 239 (351)
Q Consensus 206 ~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 239 (351)
+.++.+.|...++....+.-......+.++.+..
T Consensus 21 ~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~ 54 (93)
T 1t1v_A 21 QSEVTRILDGKRIQYQLVDISQDNALRDEMRTLA 54 (93)
T ss_dssp HHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHh
Confidence 3788888988888877776666667776666554
No 339
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=20.01 E-value=1.1e+02 Score=22.09 Aligned_cols=47 Identities=9% Similarity=-0.027 Sum_probs=32.1
Q ss_pred CchHHHHHHHHHHHh-cCCeEEEeccCCCHHHHHHHHHHhhcCCccEEEEeCc
Q psy13286 201 NSTQRVELLAKKITE-LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL 252 (351)
Q Consensus 201 ~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 252 (351)
.|..++.. |++ .|+.+..+... +.+.+..+.+..++|+++.+|-|..
T Consensus 36 AT~gTa~~----L~e~~Gl~v~~v~k~-~~eG~p~I~d~I~~geIdlVInt~~ 83 (134)
T 2xw6_A 36 ATGTTGRR----IEEATGLTVEKLLSG-PLGGDQQMGARVAEGRILAVIFFRD 83 (134)
T ss_dssp ECHHHHHH----HHHHHCCCCEECSCG-GGTHHHHHHHHHHTTCEEEEEEECC
T ss_pred EccHHHHH----HHHhhCceEEEEEec-CCCCcchHHHHHHCCCccEEEEccC
Confidence 34444444 444 58888777543 2235678999999999999888864
Done!