RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13286
(351 letters)
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 123 bits (308), Expect = 1e-34
Identities = 133/169 (78%), Positives = 150/169 (88%)
Query: 162 ELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCY 221
ELTLKG+TQYYAFV+ERQK+HCLNTLFSKLQINQ+IIFCNST RVELLAKKIT+LGY CY
Sbjct: 1 ELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCY 60
Query: 222 YIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRI 281
Y HARM Q RN+VFH+FR G R LVCSDL TRGID+QAVNVVINFDFPK AETYLHRI
Sbjct: 61 YSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRI 120
Query: 282 GRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIKSIPKVIDPALYVA 330
GRSGR+GHLG+AINLI + DR+ L++IE+ELGTEI +IP ID +LYVA
Sbjct: 121 GRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSLYVA 169
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 114 bits (285), Expect = 3e-31
Identities = 65/161 (40%), Positives = 100/161 (62%), Gaps = 1/161 (0%)
Query: 161 EELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC 219
+ELTL+G+ Q++ V+ E K L L+ L I Q++IFCN+ ++V+ L +K+ E +
Sbjct: 1 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT 60
Query: 220 CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLH 279
+H M Q R + +FRSG R L+ +D++ RG+DV V+++IN+D P E Y+H
Sbjct: 61 VSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 120
Query: 280 RIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIKSIP 320
RIGRSGRYG G+AIN + +D L IE+ T+I +P
Sbjct: 121 RIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMP 161
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 113 bits (282), Expect = 5e-31
Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 168 VTQYYAFVQERQ-KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAR 226
+ Q+Y V+E + K CL L+ + + Q++IFCN+ ++VE L K+ + I++
Sbjct: 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 60
Query: 227 MAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGR 286
+ Q R+ + +FRSG R L+ +DL RGIDVQ V++VIN+D P E Y+HRIGR GR
Sbjct: 61 LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 120
Query: 287 YGHLGIAINLITYEDRYALHRIEKELGTEIKSIPKVID 324
+G G+AIN +T ED A+ +EK T+I+ +P I
Sbjct: 121 FGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 158
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 111 bits (279), Expect = 6e-30
Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 1/153 (0%)
Query: 7 EPTQFLYLNKLTPAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRD 66
+ F + +I+ PTRELA+Q + L + N+K+ GG +
Sbjct: 55 KTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYP 114
Query: 67 DIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISIL 126
I + + ++++ TPGRILD +++ N+ + K +LDEAD++L+ F ++ +++
Sbjct: 115 QIKAL-KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNAC 173
Query: 127 PHERQILLYSATFPLTVKNFMEKHLKDPYEINL 159
+++ILL+SAT P + N +K++ D I
Sbjct: 174 NKDKRILLFSATMPREILNLAKKYMGDYSFIKA 206
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 100 bits (250), Expect = 2e-26
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 7/165 (4%)
Query: 163 LTLKGVTQYYAFVQERQ-KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCY 221
LTL + QYY + R+ K L ++ + I Q+IIFC + + + L ++ + G+
Sbjct: 1 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVS 60
Query: 222 YIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMA------E 275
+ + R + FR G + L+ +++ RGIDV+ V +V+NFD P E
Sbjct: 61 LLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYE 120
Query: 276 TYLHRIGRSGRYGHLGIAINLITYEDRYALHRIEKELGTEIKSIP 320
TYLHRIGR+GR+G G+A N+I ++ +L +I+ + IK +
Sbjct: 121 TYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLN 165
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 95.0 bits (235), Expect = 3e-24
Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
Query: 168 VTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARM 227
+ Q Y V E ++ L L + ++FC + + + LA + ++G+ IH +
Sbjct: 4 IEQSYVEVNENERFEALCRLLKNKEF-YGLVFCKTKRDTKELASMLRDIGFKAGAIHGDL 62
Query: 228 AQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRY 287
+Q+ R +V F+ R L+ +D+ +RGIDV +N VIN+ P+ E+Y+HRIGR+GR
Sbjct: 63 SQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRA 122
Query: 288 GHLGIAINLITYEDRYALHRIEKELGTEIKSI 319
G G AI++I + L IE+ + +IK +
Sbjct: 123 GKKGKAISIINRREYKKLRYIERAMKLKIKKL 154
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 96.5 bits (240), Expect = 2e-23
Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 14/125 (11%)
Query: 190 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHR----------NRVFHDF 239
++ + +IFC+S ++ + LA K+ LG + + +
Sbjct: 33 VIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTG 92
Query: 240 RSGLCRNLVCSDLFTRG---IDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINL 296
+G +++ + + + P+ A + R GR+GR G GI +
Sbjct: 93 FTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFV 151
Query: 297 ITYED 301
E
Sbjct: 152 APGER 156
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 95.8 bits (237), Expect = 3e-23
Identities = 31/290 (10%), Positives = 73/290 (25%), Gaps = 44/290 (15%)
Query: 27 TLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRIL 86
TLI+ PTR +A + + L + + +
Sbjct: 41 TLILAPTRVVAAEMEE---ALRGL--------PIRYQTPAIRAEHTGREIVDLMCHATFT 89
Query: 87 DLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNF 146
+ + + ++++DEA + E + +AT P + F
Sbjct: 90 MRLLSPIRVPN-YNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPF 148
Query: 147 MEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRV 206
+ + + + ER + +++ F S +
Sbjct: 149 PQSNAP---------------IMDEEREIPERSWNSGHEWV--TDFKGKTVWFVPSIKAG 191
Query: 207 ELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDV-----QA 261
+A + + G + + + + + + + + +
Sbjct: 192 NDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTTDISEMGANFKAERVIDPRRC 251
Query: 262 VNVVINFDFPKMAET----------YLHRIGRSGRYGHLGIAINLITYED 301
+ VI D + R GR GR + E
Sbjct: 252 MKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGEP 301
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 91.1 bits (225), Expect = 1e-21
Identities = 41/259 (15%), Positives = 92/259 (35%), Gaps = 24/259 (9%)
Query: 52 NVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKILVLDEADKLL 111
++ ++ + +++R Q ++ +A D + + H L L A +LL
Sbjct: 35 ETGLLESSSPDIPKKEVLRAGQIINEEMAKGNH-----DLRGLLLYHAMALKLHHAIELL 89
Query: 112 SQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQY 171
L I L E + A+ K + + L ++
Sbjct: 90 ETQGLSALRAYIKKLYEEAKAGSTKAS----------KEIFSDKRMKKAISLLVQAKEIG 139
Query: 172 YAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH 231
+ + + + Q ++ I+F N + + + ++ + G + ++ +
Sbjct: 140 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 199
Query: 232 R--------NRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGR 283
+ +F G LV + + G+DV V++V+ ++ A + R GR
Sbjct: 200 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGR 259
Query: 284 SGRYGHLGIAINLITYEDR 302
+GR+ G I L+ R
Sbjct: 260 TGRHMP-GRVIILMAKGTR 277
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 87.8 bits (216), Expect = 2e-21
Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 1/164 (0%)
Query: 167 GVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAR 226
G+ QYY +++ +K L L L+ NQ +IF S QR LA+ + E + IH
Sbjct: 1 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRG 60
Query: 227 MAQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGR 286
M Q R + F+ R LV ++LF RG+D++ VN+ N+D P+ ++TYLHR+ R+GR
Sbjct: 61 MPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR 120
Query: 287 YGHLGIAINLITYE-DRYALHRIEKELGTEIKSIPKVIDPALYV 329
+G G+AI ++ E D L+ ++ I +P ID + Y+
Sbjct: 121 FGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 164
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 87.2 bits (215), Expect = 1e-20
Identities = 47/131 (35%), Positives = 76/131 (58%)
Query: 29 IIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDL 88
I+ PTRELA+Q + + L ++NV+ GGTN+ +DI ++ H++ TPGR+ D+
Sbjct: 90 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 149
Query: 89 MDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFME 148
+ ++ K+LVLDEAD++L++ FK + V LP Q++L SAT P +
Sbjct: 150 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 209
Query: 149 KHLKDPYEINL 159
K + DP I +
Sbjct: 210 KFMTDPIRILV 220
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 85.0 bits (209), Expect = 4e-20
Identities = 88/132 (66%), Positives = 108/132 (81%), Gaps = 1/132 (0%)
Query: 28 LIIVPTRELALQTSQICIELAKH-LNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRIL 86
++IVPTRELALQ SQICI+++KH KVM TTGGTNLRDDIMR+ VH++IATPGRIL
Sbjct: 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRIL 134
Query: 87 DLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNF 146
DL+ K VA +DH +++VLDEADKLLSQDF +++ +I LP RQILLYSATFPL+V+ F
Sbjct: 135 DLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKF 194
Query: 147 MEKHLKDPYEIN 158
M HL+ PYEIN
Sbjct: 195 MNSHLEKPYEIN 206
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 82.9 bits (204), Expect = 5e-19
Identities = 18/167 (10%), Positives = 53/167 (31%), Gaps = 16/167 (9%)
Query: 175 VQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNR 234
+ + L+++ KL II+ + + E + + + + A +
Sbjct: 8 AVNDESISTLSSILEKLG-TGGIIYARTGEEAEEIYESLKN------KFRIGIVTATKKG 60
Query: 235 VFHDFRSGLCRNLVCSDLFTRGID-----VQAVNVVINFDFPKMAETYLHRIGRSGRYGH 289
+ F G +L+ + + + + + + P + I
Sbjct: 61 DYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSP 116
Query: 290 LGIAINLITYEDRYALHRIEKELGTEIKSIPKVIDPALYVARPEDMD 336
+ + Y + + R+ + I + +++ + RP+ D
Sbjct: 117 QMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKD 163
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 81.4 bits (200), Expect = 9e-19
Identities = 45/129 (34%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 29 IIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDL 88
++ PTRELALQ ++ + LA H+++KV GGT+ +D + + +++ TPGR+ D
Sbjct: 83 MLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDN 141
Query: 89 MDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFME 148
+ ++ D K+ +LDEAD++LS FK + + ++LP Q++L SAT P V
Sbjct: 142 IQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTT 201
Query: 149 KHLKDPYEI 157
K +++P I
Sbjct: 202 KFMRNPVRI 210
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 80.8 bits (198), Expect = 1e-18
Identities = 79/132 (59%), Positives = 104/132 (78%)
Query: 30 IVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLM 89
+VPTRELALQTSQ+ L KH + MVTTGGTNLRDDI+R+ + VH+++ TPGR+LDL
Sbjct: 75 MVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLA 134
Query: 90 DKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEK 149
++VA++ C + ++DEADK+LS+DFK +++ ++S LP Q LL+SATFPLTVK FM K
Sbjct: 135 SRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVK 194
Query: 150 HLKDPYEINLME 161
HL PYEINLME
Sbjct: 195 HLHKPYEINLME 206
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 80.3 bits (197), Expect = 3e-18
Identities = 43/133 (32%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Query: 28 LIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI-IATPGRIL 86
L++ PTRELA Q ++ + L ++ GGTN+R ++ ++ + I + TPGR+
Sbjct: 84 LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVF 143
Query: 87 DLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNF 146
D+++++ + + K+ VLDEAD++LS+ FK + + L Q++L SAT P V
Sbjct: 144 DMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEV 203
Query: 147 MEKHLKDPYEINL 159
+K ++DP I +
Sbjct: 204 TKKFMRDPIRILV 216
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 78.0 bits (191), Expect = 1e-17
Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Query: 28 LIIVPTRELALQTSQICIELAKHLNVKVM-VTTGGTNLRDDIMRIYQ-KVHLIIATPGRI 85
L++ TRELA Q S+ +K++ + V GG +++ D + + H+++ TPGRI
Sbjct: 73 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 132
Query: 86 LDLMDKQVANMDHCKILVLDEADKLL-SQDFKGMLDHVISILPHERQILLYSATFPLTVK 144
L L + N+ H K +LDE DK+L D + + + + PHE+Q++++SAT ++
Sbjct: 133 LALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR 192
Query: 145 NFMEKHLKDPYEI 157
K ++DP EI
Sbjct: 193 PVCRKFMQDPMEI 205
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 74.6 bits (182), Expect = 2e-16
Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 5/167 (2%)
Query: 133 LLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQ 192
L + L K + E + K+ L + + +
Sbjct: 33 FLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHR 92
Query: 193 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDL 252
++ IIF + V ++K + I R ++ R + FR+G R +V S +
Sbjct: 93 KDKIIIFTRHNELVYRISKV-----FLIPAITHRTSREEREEILEGFRTGRFRAIVSSQV 147
Query: 253 FTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGIAINLITY 299
GIDV NV + A Y+ R+GR R L
Sbjct: 148 LDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYEL 194
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 74.2 bits (181), Expect = 5e-16
Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 4/144 (2%)
Query: 19 PAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78
+K LI+ PTRELA+Q + + + ++ V GG + I + HL+
Sbjct: 93 YSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLL 152
Query: 79 IATPGRILDLMDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISIL----PHERQILL 134
+ATPGR++D ++K +++ CK +VLDEAD++L F+ + +I RQ L+
Sbjct: 153 VATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLM 212
Query: 135 YSATFPLTVKNFMEKHLKDPYEIN 158
+SATFP ++ L + +
Sbjct: 213 FSATFPKEIQKLAADFLYNYIFMT 236
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 73.1 bits (178), Expect = 7e-16
Identities = 36/137 (26%), Positives = 59/137 (43%)
Query: 171 YYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQA 230
Y +++ + + L + + II+CNS +VE A ++ G HA +
Sbjct: 8 RYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENN 67
Query: 231 HRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRYGHL 290
R V F+ + +V + F GI+ V V++FD P+ E+Y GR+GR G
Sbjct: 68 VRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLP 127
Query: 291 GIAINLITYEDRYALHR 307
A+ D L R
Sbjct: 128 AEAMLFYDPADMAWLRR 144
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 70.9 bits (173), Expect = 1e-15
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 12/138 (8%)
Query: 168 VTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARM 227
+ + + ++ + +IFC+S ++ + LA K+ LG +
Sbjct: 10 IEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYY--- 66
Query: 228 AQAHRNRVFHDFRSGLCRNLVCSDLFTRGIDVQAVNV---VINFDFPKMAETYLHRIGRS 284
R + +V +D G +V + P+ A + R GR+
Sbjct: 67 ----RGLDVSVIPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRT 122
Query: 285 GRYGHLGIAINLITYEDR 302
GR G GI + +R
Sbjct: 123 GR-GKPGI-YRFVAPGER 138
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 68.3 bits (166), Expect = 2e-14
Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 13/147 (8%)
Query: 194 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLF 253
++++ + + E L + E G Y+H+ + R + D R G LV +L
Sbjct: 32 ERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL 91
Query: 254 TRGIDVQAVNVVINFDFPKMA-----ETYLHRIGRSGR--YGHLGIAINLITYEDRYALH 306
G+D+ V++V D K + + IGR+ R GH+ + + IT A+
Sbjct: 92 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYADTITKSMEIAIQ 151
Query: 307 R------IEKELGTEIKSIPKVIDPAL 327
I++E + +P+ + +
Sbjct: 152 ETKRRRAIQEEYNRKHGIVPRTVKKEI 178
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 66.6 bits (161), Expect = 2e-13
Identities = 36/129 (27%), Positives = 74/129 (57%)
Query: 32 PTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDK 91
++ +T +I K + GGT+ + + ++ + H++I TPGRI D + +
Sbjct: 81 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE 140
Query: 92 QVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHL 151
Q ++ ILV+DEAD +L F +D + + +P + Q+L++SAT P +K F++K++
Sbjct: 141 QALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYM 200
Query: 152 KDPYEINLM 160
++P ++++
Sbjct: 201 ENPTFVHVL 209
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 58.9 bits (142), Expect = 4e-11
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Query: 195 QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFT 254
++++ + + E L + E G Y+H + R + D R G LV +L
Sbjct: 33 RTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLR 92
Query: 255 RGIDVQAVNVVI-----NFDFPKMAETYLHRIGRSGR--YGHLGIAINLITYEDRYAL 305
G+D+ V++V F + + + IGR+ R G + + + ++ + A+
Sbjct: 93 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAI 150
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 59.5 bits (143), Expect = 5e-11
Identities = 21/144 (14%), Positives = 47/144 (32%), Gaps = 21/144 (14%)
Query: 25 KATLIIVPTRELALQTSQICIELAKHLNVKVMV------TTGGTNLRDDIMRIYQKVHLI 78
K +I PT L +Q ++ + A+ V +++ M+ + ++
Sbjct: 87 KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIV 146
Query: 79 IATPGRILDLMDKQVANMDHCKILVLDEADKLLSQ-----------DFKGMLDHVISILP 127
I T + + H + +D+ D +L F L +
Sbjct: 147 ITTTQFLSKHYR----ELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGE 202
Query: 128 HERQILLYSATFPLTVKNFMEKHL 151
+++ +AT K + + L
Sbjct: 203 ARGCLMVSTATAKKGKKAELFRQL 226
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 56.1 bits (134), Expect = 5e-10
Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 42/192 (21%)
Query: 159 LMEELTLKGVTQYYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITEL 216
L+E + +G + + + L + + ++F ++ + E A K++ +
Sbjct: 4 LVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAI 63
Query: 217 G------------------------------YCCYYIHARMAQAHRNRVFHDFRSGLCRN 246
+ HA + R V FR G +
Sbjct: 64 TAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKV 123
Query: 247 LVCSDLFTRGIDVQAVNVVI-------NFDFPKMAETYLHRIGRSGRYGH--LGIAINLI 297
+V + G+++ A V++ + Y GR+GR G G AI ++
Sbjct: 124 VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 183
Query: 298 TYEDR-YALHRI 308
DR A+ R
Sbjct: 184 GKRDREIAVKRY 195
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 51.2 bits (121), Expect = 3e-08
Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 6/142 (4%)
Query: 19 PAKITSKATLIIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLI 78
PA + + T+++ P L T L ++ L+
Sbjct: 60 PALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLL 119
Query: 79 IATPGRILDLMDKQVANMDHCKILVLDEADKLL--SQDFKGMLDHVISILPH--ERQILL 134
P R++ + + +L +DEA + DF+ + + +
Sbjct: 120 YIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMA 179
Query: 135 YSATFPLTVKNFMEK--HLKDP 154
+AT T + + + L DP
Sbjct: 180 LTATADDTTRQDIVRLLGLNDP 201
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 47.3 bits (111), Expect = 5e-07
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 29 IIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDL 88
+VP R LA + + + K + T + +I+ T + L
Sbjct: 73 YVVPLRALAGEKYESFKKWEKIGLRIGISTGDYES----RDEHLGDCDIIVTTSEKADSL 128
Query: 89 MDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISIL---PHERQILLYSATFP 140
+ + + + LV+DE L S+ L+ +++ + +++ SAT P
Sbjct: 129 IRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAP 183
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 38.8 bits (89), Expect = 7e-04
Identities = 30/192 (15%), Positives = 64/192 (33%), Gaps = 13/192 (6%)
Query: 103 VLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEE 162
L +A + S + +S + +++ + A EK L + +
Sbjct: 32 FLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI-------YEKCLTGEEGFDGALD 84
Query: 163 LTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQS---IIFCNSTQRVELLAKKITELGYC 219
L + + Q K+ L+ + + + S ++ N TQ ++L K Y
Sbjct: 85 LFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYL 144
Query: 220 CYYIHARMAQAHRNRVFHDFRSGLCRNLVC---SDLFTRGIDVQAVNVVINFDFPKMAET 276
+ M+ R ++ F + + S G+++ N ++ FD
Sbjct: 145 YVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 204
Query: 277 YLHRIGRSGRYG 288
+ R R G
Sbjct: 205 DEQAMARVWRDG 216
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 37.8 bits (86), Expect = 8e-04
Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 29 IIVPTRELALQTSQICIELAKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDL 88
++ PT+ L LQ ++ L K++ TG + + + +I+ATP I +
Sbjct: 57 MLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIEND 115
Query: 89 MDKQVANMDHCKILVLDEADKLLSQDFKGMLDHVISILPHERQILLYSATFPLTVKNFME 148
+ +++ ++V DEA + + + ++ +A+ T + ME
Sbjct: 116 LLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIME 175
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 37.3 bits (86), Expect = 0.002
Identities = 7/88 (7%), Positives = 26/88 (29%), Gaps = 5/88 (5%)
Query: 195 QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFT 254
+ F S + ++A + + G ++ + + + ++ +D+
Sbjct: 38 PTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDF----ILATDIAE 93
Query: 255 RGIDVQAVNVVINFDFPKMAETYLHRIG 282
G ++ V++
Sbjct: 94 MGANLCVER-VLDCRTAFKPVLVDEGRK 120
>d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain
{Serratia marcescens [TaxId: 615]}
Length = 356
Score = 27.4 bits (60), Expect = 2.4
Identities = 9/58 (15%), Positives = 21/58 (36%)
Query: 48 AKHLNVKVMVTTGGTNLRDDIMRIYQKVHLIIATPGRILDLMDKQVANMDHCKILVLD 105
A + ++++M + GG +D+ + + TP V M ++
Sbjct: 81 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVN 138
>d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella
oxytoca [TaxId: 571]}
Length = 551
Score = 27.5 bits (61), Expect = 3.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 306 HRIEKELGTEIKSIPKVIDP 325
+R++ E EIK+IP +DP
Sbjct: 531 YRLQGERWEEIKNIPGALDP 550
>d1qvba_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Thermosphaera
aggregans [TaxId: 54254]}
Length = 481
Score = 25.9 bits (56), Expect = 8.8
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 43 ICIELAKHLNVKVMVTTGGTNLRDDIMRI-YQKVHL 77
+ EL V ++VT G + D +R Y H+
Sbjct: 370 LLKELYNRYGVDLIVTENGVSDSRDALRPAYLVSHV 405
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 25.2 bits (55), Expect = 9.0
Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 14/128 (10%)
Query: 195 QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSDLFT 254
++ + + EL++K + G ++A+ + + + G + +++
Sbjct: 36 PVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAG 93
Query: 255 RGIDVQAVNVVINFD--------FPKMAETYLHRIGRSGRYGHLGIAINLITYED----R 302
RG D++ V + GRSGR G GI ++ ED R
Sbjct: 94 RGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRR 153
Query: 303 YALHRIEK 310
+ R
Sbjct: 154 FGAERTMA 161
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.399
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,281,107
Number of extensions: 60440
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 38
Length of query: 351
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 265
Effective length of database: 1,226,816
Effective search space: 325106240
Effective search space used: 325106240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)