Query psy13287
Match_columns 140
No_of_seqs 107 out of 1585
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 15:36:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328|consensus 100.0 9.3E-33 2E-37 189.8 12.7 140 1-140 189-330 (400)
2 KOG0326|consensus 100.0 4.9E-32 1.1E-36 188.9 8.4 139 2-140 248-386 (459)
3 COG0513 SrmB Superfamily II DN 100.0 3.2E-30 6.8E-35 195.0 16.9 140 1-140 194-337 (513)
4 KOG0331|consensus 100.0 1.6E-30 3.4E-35 192.8 12.6 140 1-140 259-405 (519)
5 KOG0333|consensus 100.0 4E-28 8.7E-33 178.1 16.0 128 13-140 453-581 (673)
6 KOG0330|consensus 100.0 7.3E-29 1.6E-33 176.5 11.7 139 2-140 225-364 (476)
7 PRK11776 ATP-dependent RNA hel 100.0 1.2E-27 2.7E-32 179.4 17.5 139 2-140 168-306 (460)
8 KOG0332|consensus 100.0 2.1E-27 4.5E-32 168.5 12.7 137 4-140 256-394 (477)
9 PRK11634 ATP-dependent RNA hel 99.9 2.8E-26 6.1E-31 176.8 17.0 139 2-140 170-309 (629)
10 KOG0327|consensus 99.9 7.5E-27 1.6E-31 165.8 12.1 138 1-140 189-327 (397)
11 PRK10590 ATP-dependent RNA hel 99.9 8.2E-26 1.8E-30 169.4 16.4 139 2-140 170-309 (456)
12 PRK04537 ATP-dependent RNA hel 99.9 9.5E-26 2.1E-30 172.6 16.5 139 2-140 180-321 (572)
13 PTZ00110 helicase; Provisional 99.9 1.7E-25 3.8E-30 170.5 17.0 140 1-140 297-441 (545)
14 PRK04837 ATP-dependent RNA hel 99.9 2.1E-25 4.5E-30 165.9 16.8 139 2-140 178-319 (423)
15 KOG0338|consensus 99.9 1.1E-25 2.4E-30 165.0 9.3 140 1-140 347-490 (691)
16 PRK01297 ATP-dependent RNA hel 99.9 4.9E-24 1.1E-28 160.6 17.3 139 2-140 258-399 (475)
17 PLN00206 DEAD-box ATP-dependen 99.9 3.5E-24 7.6E-29 162.7 16.5 138 2-140 291-432 (518)
18 KOG0343|consensus 99.9 1E-24 2.2E-29 161.3 12.8 140 1-140 235-379 (758)
19 PRK11192 ATP-dependent RNA hel 99.9 7.2E-24 1.6E-28 158.1 17.0 139 2-140 168-309 (434)
20 PTZ00424 helicase 45; Provisio 99.9 2.1E-23 4.4E-28 154.1 17.8 139 2-140 191-331 (401)
21 KOG0342|consensus 99.9 2.8E-24 6E-29 156.8 11.5 140 1-140 250-394 (543)
22 KOG0335|consensus 99.9 9.8E-24 2.1E-28 154.9 13.2 140 1-140 247-401 (482)
23 KOG0345|consensus 99.9 9.4E-24 2E-28 153.5 11.4 140 1-140 177-321 (567)
24 KOG0340|consensus 99.9 2.9E-23 6.2E-28 146.7 11.7 140 1-140 173-318 (442)
25 KOG0336|consensus 99.9 7.1E-23 1.5E-27 147.4 11.1 140 1-140 387-529 (629)
26 KOG0341|consensus 99.9 2.5E-23 5.3E-28 149.0 8.2 139 1-140 346-485 (610)
27 KOG4284|consensus 99.9 3.4E-23 7.4E-28 155.7 9.3 140 1-140 188-336 (980)
28 KOG0339|consensus 99.9 2.5E-22 5.5E-27 147.6 12.4 140 1-140 390-532 (731)
29 TIGR03817 DECH_helic helicase/ 99.9 8.7E-22 1.9E-26 154.5 14.0 134 3-140 185-343 (742)
30 TIGR00614 recQ_fam ATP-depende 99.9 1.1E-20 2.3E-25 142.3 16.8 132 5-140 156-290 (470)
31 PRK11057 ATP-dependent DNA hel 99.9 1.6E-20 3.5E-25 145.0 16.7 131 5-140 168-300 (607)
32 KOG0334|consensus 99.9 1.1E-21 2.4E-26 153.3 10.0 139 2-140 536-677 (997)
33 TIGR01389 recQ ATP-dependent D 99.9 2.5E-20 5.5E-25 143.7 16.3 132 4-140 155-288 (591)
34 PLN03137 ATP-dependent DNA hel 99.9 2.5E-20 5.5E-25 148.6 15.7 134 6-140 610-744 (1195)
35 PRK10689 transcription-repair 99.8 4.4E-20 9.6E-25 149.6 15.7 134 3-140 739-875 (1147)
36 TIGR02621 cas3_GSU0051 CRISPR- 99.8 4E-20 8.8E-25 144.7 14.6 137 1-140 189-350 (844)
37 KOG0337|consensus 99.8 1.1E-20 2.3E-25 136.3 10.1 140 1-140 184-325 (529)
38 TIGR01587 cas3_core CRISPR-ass 99.8 5.1E-20 1.1E-24 134.3 12.8 136 5-140 147-292 (358)
39 COG0514 RecQ Superfamily II DN 99.8 3.3E-20 7.1E-25 140.3 11.9 137 2-140 157-294 (590)
40 KOG0346|consensus 99.8 2.2E-20 4.7E-25 135.4 10.4 137 1-137 190-329 (569)
41 KOG0344|consensus 99.8 2.6E-20 5.7E-25 138.5 9.4 140 1-140 309-452 (593)
42 TIGR00580 mfd transcription-re 99.8 3.4E-19 7.3E-24 142.0 16.0 135 3-140 590-726 (926)
43 PRK09401 reverse gyrase; Revie 99.8 2.4E-19 5.3E-24 145.6 13.3 118 12-140 268-394 (1176)
44 TIGR01970 DEAH_box_HrpB ATP-de 99.8 7.7E-19 1.7E-23 138.6 15.3 132 3-140 137-276 (819)
45 PRK11664 ATP-dependent RNA hel 99.8 7.7E-19 1.7E-23 138.7 14.5 132 3-140 140-279 (812)
46 PHA02653 RNA helicase NPH-II; 99.8 1.5E-18 3.2E-23 134.5 14.5 132 5-140 313-460 (675)
47 PRK09751 putative ATP-dependen 99.8 8.1E-18 1.8E-22 138.2 15.8 136 2-140 149-341 (1490)
48 TIGR03158 cas3_cyano CRISPR-as 99.8 2.6E-17 5.7E-22 120.2 14.7 124 10-140 179-332 (357)
49 TIGR01054 rgy reverse gyrase. 99.8 1.3E-17 2.8E-22 135.7 14.2 126 5-140 257-393 (1171)
50 PRK13767 ATP-dependent helicas 99.8 2.5E-17 5.4E-22 131.6 15.2 65 76-140 284-354 (876)
51 PRK14701 reverse gyrase; Provi 99.8 1.4E-17 3.1E-22 138.3 14.0 124 8-140 264-396 (1638)
52 KOG0347|consensus 99.8 4.1E-19 8.8E-24 131.8 4.0 138 2-140 361-527 (731)
53 PRK00254 ski2-like helicase; P 99.7 4E-17 8.8E-22 128.4 12.7 135 2-140 159-335 (720)
54 KOG0348|consensus 99.7 2.6E-17 5.5E-22 122.1 7.7 129 12-140 331-511 (708)
55 PRK10917 ATP-dependent DNA hel 99.7 4.9E-16 1.1E-20 121.6 15.3 132 6-140 403-545 (681)
56 COG1202 Superfamily II helicas 99.7 1.6E-16 3.5E-21 119.0 11.4 130 6-140 366-504 (830)
57 PRK02362 ski2-like helicase; P 99.7 1.3E-16 2.9E-21 125.8 11.6 66 75-140 242-343 (737)
58 PRK01172 ski2-like helicase; P 99.7 7E-16 1.5E-20 120.8 12.8 129 7-140 164-325 (674)
59 COG1201 Lhr Lhr-like helicases 99.7 2.9E-15 6.2E-20 117.4 14.5 132 3-140 175-318 (814)
60 KOG0351|consensus 99.7 2.8E-15 6E-20 119.2 13.7 135 5-140 414-549 (941)
61 PRK12898 secA preprotein trans 99.7 1.6E-15 3.5E-20 116.8 11.5 124 14-140 410-535 (656)
62 TIGR00643 recG ATP-dependent D 99.6 6.5E-15 1.4E-19 114.5 14.3 125 12-140 386-522 (630)
63 PRK11131 ATP-dependent RNA hel 99.6 6.2E-15 1.3E-19 120.0 14.4 123 11-140 217-351 (1294)
64 KOG0350|consensus 99.6 8.1E-16 1.8E-20 113.3 7.6 130 11-140 359-497 (620)
65 KOG0349|consensus 99.6 3.1E-15 6.6E-20 109.2 9.3 129 12-140 400-572 (725)
66 PRK09694 helicase Cas3; Provis 99.6 2.1E-13 4.6E-18 108.5 15.4 76 65-140 548-635 (878)
67 cd00079 HELICc Helicase superf 99.5 2.4E-13 5.2E-18 85.5 11.8 89 51-140 2-92 (131)
68 PHA02558 uvsW UvsW helicase; P 99.5 1.1E-13 2.3E-18 105.3 11.4 78 63-140 329-409 (501)
69 COG1204 Superfamily II helicas 99.5 1.1E-13 2.4E-18 108.9 11.8 129 11-140 179-354 (766)
70 PRK04914 ATP-dependent helicas 99.5 5.8E-14 1.3E-18 112.4 10.1 81 60-140 477-560 (956)
71 COG4098 comFA Superfamily II D 99.5 2.1E-13 4.5E-18 97.0 11.4 126 10-140 231-369 (441)
72 TIGR01967 DEAH_box_HrpA ATP-de 99.5 3E-13 6.4E-18 110.5 13.3 130 3-140 203-344 (1283)
73 KOG0353|consensus 99.5 4.6E-14 1E-18 101.8 7.7 137 4-140 242-381 (695)
74 COG1200 RecG RecG-like helicas 99.5 4.5E-13 9.7E-18 102.4 13.4 131 5-140 403-547 (677)
75 TIGR00631 uvrb excinuclease AB 99.5 4.9E-13 1.1E-17 104.1 13.7 79 62-140 426-506 (655)
76 TIGR03714 secA2 accessory Sec 99.5 6.5E-13 1.4E-17 103.8 12.0 123 14-140 361-486 (762)
77 PRK09200 preprotein translocas 99.5 7.2E-13 1.6E-17 104.2 11.8 123 14-140 365-490 (790)
78 PRK05298 excinuclease ABC subu 99.5 1.3E-12 2.8E-17 102.0 12.7 79 62-140 430-510 (652)
79 PRK12904 preprotein translocas 99.4 1.7E-12 3.7E-17 102.2 12.0 123 14-140 367-492 (830)
80 KOG0951|consensus 99.4 1.5E-12 3.2E-17 104.6 11.2 128 11-140 473-647 (1674)
81 PRK13104 secA preprotein trans 99.4 3.2E-12 7E-17 101.0 11.5 123 14-140 381-506 (896)
82 COG0556 UvrB Helicase subunit 99.4 5.9E-12 1.3E-16 94.1 11.8 125 12-140 386-510 (663)
83 COG1205 Distinct helicase fami 99.4 1.1E-11 2.3E-16 99.0 13.9 138 2-140 222-378 (851)
84 TIGR00963 secA preprotein tran 99.4 6.6E-12 1.4E-16 97.9 11.2 123 14-140 342-467 (745)
85 COG1197 Mfd Transcription-repa 99.4 1.8E-11 3.9E-16 98.3 13.3 135 3-140 733-869 (1139)
86 COG1111 MPH1 ERCC4-like helica 99.4 4.7E-12 1E-16 93.9 9.2 79 62-140 348-439 (542)
87 PRK13107 preprotein translocas 99.3 1.4E-11 3.1E-16 97.3 11.3 123 14-140 386-511 (908)
88 PRK12900 secA preprotein trans 99.3 1.9E-11 4.1E-16 97.3 11.7 122 14-140 535-660 (1025)
89 PRK12906 secA preprotein trans 99.3 1.7E-11 3.6E-16 96.4 11.0 123 14-140 377-502 (796)
90 PRK13766 Hef nuclease; Provisi 99.3 2E-11 4.3E-16 97.2 10.5 80 61-140 346-437 (773)
91 KOG0329|consensus 99.3 7.7E-13 1.7E-17 91.0 1.6 88 1-88 206-295 (387)
92 TIGR00595 priA primosomal prot 99.2 1.7E-10 3.6E-15 87.9 11.0 52 89-140 271-326 (505)
93 KOG0952|consensus 99.2 2.6E-10 5.5E-15 90.7 11.8 128 9-140 272-436 (1230)
94 KOG0354|consensus 99.2 9.3E-11 2E-15 91.0 9.0 80 61-140 394-488 (746)
95 KOG0352|consensus 99.2 5.7E-11 1.2E-15 87.0 6.0 129 11-140 175-319 (641)
96 COG1203 CRISPR-associated heli 99.2 4.3E-10 9.4E-15 89.1 11.3 129 12-140 370-508 (733)
97 COG1643 HrpA HrpA-like helicas 99.1 1.2E-09 2.7E-14 86.7 12.8 134 2-140 185-327 (845)
98 PF00271 Helicase_C: Helicase 99.1 1.6E-10 3.5E-15 66.6 5.5 47 94-140 1-47 (78)
99 PRK05580 primosome assembly pr 99.1 2.7E-09 5.9E-14 84.0 13.4 53 88-140 438-494 (679)
100 TIGR00603 rad25 DNA repair hel 99.1 8.4E-10 1.8E-14 86.6 8.8 76 60-140 478-556 (732)
101 KOG0950|consensus 99.0 1.9E-09 4.2E-14 85.2 8.5 65 76-140 460-562 (1008)
102 smart00490 HELICc helicase sup 98.9 4.6E-09 1E-13 60.5 5.9 50 91-140 2-51 (82)
103 KOG0922|consensus 98.9 3.8E-08 8.3E-13 75.5 10.9 129 3-137 187-327 (674)
104 KOG0948|consensus 98.8 2.5E-08 5.3E-13 77.7 8.0 66 75-140 382-486 (1041)
105 KOG0947|consensus 98.7 1.7E-07 3.7E-12 74.7 10.7 72 69-140 560-670 (1248)
106 COG1110 Reverse gyrase [DNA re 98.7 7E-08 1.5E-12 77.3 8.7 118 12-140 276-401 (1187)
107 TIGR01407 dinG_rel DnaQ family 98.7 2.9E-07 6.3E-12 74.4 11.7 63 75-140 673-739 (850)
108 COG1061 SSL2 DNA or RNA helica 98.6 3.2E-07 6.8E-12 69.2 9.4 76 64-140 270-346 (442)
109 PLN03142 Probable chromatin-re 98.6 3.8E-07 8.3E-12 74.4 8.8 82 59-140 468-554 (1033)
110 COG4581 Superfamily II RNA hel 98.5 1.9E-06 4.2E-11 69.9 12.1 66 75-140 378-484 (1041)
111 KOG4150|consensus 98.5 1.3E-06 2.8E-11 66.9 9.0 127 11-140 450-597 (1034)
112 KOG0953|consensus 98.5 1E-06 2.2E-11 66.9 8.0 76 64-140 345-423 (700)
113 KOG0923|consensus 98.3 1.3E-05 2.9E-10 62.2 11.6 131 2-138 401-544 (902)
114 KOG0920|consensus 98.3 6.2E-06 1.3E-10 66.4 10.2 126 11-139 318-483 (924)
115 PRK11448 hsdR type I restricti 98.3 4.3E-06 9.3E-11 69.2 9.4 64 75-140 697-770 (1123)
116 PF06862 DUF1253: Protein of u 98.2 0.00014 3.1E-09 54.6 14.9 122 13-134 216-358 (442)
117 PRK12903 secA preprotein trans 98.2 2E-05 4.3E-10 63.2 10.4 121 14-139 363-487 (925)
118 KOG0924|consensus 98.2 9.9E-06 2.1E-10 63.2 7.4 123 11-138 499-635 (1042)
119 PRK12326 preprotein translocas 98.1 3.4E-05 7.3E-10 60.9 10.1 121 14-139 364-488 (764)
120 PRK07246 bifunctional ATP-depe 98.0 0.00011 2.3E-09 59.6 10.8 63 75-140 646-708 (820)
121 PRK08074 bifunctional ATP-depe 97.9 0.00015 3.2E-09 59.6 11.0 66 75-140 751-818 (928)
122 PRK13103 secA preprotein trans 97.9 7E-05 1.5E-09 60.4 7.9 121 14-139 386-510 (913)
123 CHL00122 secA preprotein trans 97.8 0.00033 7.1E-09 56.4 11.0 122 14-139 361-487 (870)
124 PRK12899 secA preprotein trans 97.8 0.00015 3.2E-09 58.8 8.9 122 14-139 505-629 (970)
125 PRK14873 primosome assembly pr 97.8 0.00018 4E-09 56.9 9.3 75 60-134 170-248 (665)
126 PRK12902 secA preprotein trans 97.8 0.00029 6.2E-09 56.9 9.4 122 14-139 376-502 (939)
127 PRK12901 secA preprotein trans 97.8 0.00023 5E-09 58.2 8.9 121 15-139 566-689 (1112)
128 COG1199 DinG Rad3-related DNA 97.8 0.00043 9.4E-09 54.8 10.4 63 75-140 478-542 (654)
129 TIGR00595 priA primosomal prot 97.7 0.00031 6.7E-09 54.1 9.0 73 62-134 9-84 (505)
130 KOG0925|consensus 97.7 0.00097 2.1E-08 50.7 11.2 124 3-137 183-324 (699)
131 PRK05580 primosome assembly pr 97.7 0.00042 9.1E-09 55.2 9.4 75 60-134 172-249 (679)
132 COG1198 PriA Primosomal protei 97.7 0.00019 4.1E-09 57.1 7.1 77 58-134 225-304 (730)
133 PRK11747 dinG ATP-dependent DN 97.6 0.002 4.3E-08 51.6 12.5 62 75-140 533-599 (697)
134 TIGR03117 cas_csf4 CRISPR-asso 97.6 0.0022 4.8E-08 50.6 12.1 71 67-140 462-536 (636)
135 COG1110 Reverse gyrase [DNA re 97.6 0.00064 1.4E-08 55.5 8.7 73 64-136 113-191 (1187)
136 PRK10917 ATP-dependent DNA hel 97.5 0.00059 1.3E-08 54.4 7.9 61 75-135 309-373 (681)
137 TIGR00604 rad3 DNA repair heli 97.5 0.0037 7.9E-08 50.2 12.2 66 75-140 521-598 (705)
138 KOG0392|consensus 97.5 0.0012 2.5E-08 55.0 8.9 82 59-140 1307-1409(1549)
139 COG1198 PriA Primosomal protei 97.4 0.0036 7.8E-08 50.1 11.5 52 89-140 493-548 (730)
140 TIGR00643 recG ATP-dependent D 97.3 0.0013 2.7E-08 52.1 7.8 61 75-135 283-347 (630)
141 PRK14701 reverse gyrase; Provi 97.3 0.0025 5.4E-08 55.2 9.4 60 75-134 121-186 (1638)
142 KOG1000|consensus 97.2 0.0014 3.1E-08 49.8 6.7 81 60-140 470-558 (689)
143 PF13307 Helicase_C_2: Helicas 97.2 0.0012 2.7E-08 43.4 5.4 69 69-140 3-75 (167)
144 COG0513 SrmB Superfamily II DN 97.1 0.0026 5.6E-08 49.2 7.4 52 79-134 102-158 (513)
145 KOG0387|consensus 97.1 0.0034 7.4E-08 50.1 8.0 81 60-140 528-613 (923)
146 TIGR00614 recQ_fam ATP-depende 97.0 0.0067 1.4E-07 46.4 9.0 59 76-134 51-109 (470)
147 TIGR00580 mfd transcription-re 97.0 0.004 8.6E-08 51.3 7.7 60 75-134 499-562 (926)
148 TIGR01054 rgy reverse gyrase. 96.9 0.0043 9.3E-08 52.3 7.3 60 75-134 120-186 (1171)
149 TIGR01389 recQ ATP-dependent D 96.8 0.0087 1.9E-07 47.1 8.1 60 75-134 52-111 (591)
150 COG0553 HepA Superfamily II DN 96.8 0.014 3.1E-07 47.4 9.5 79 62-140 692-777 (866)
151 COG1200 RecG RecG-like helicas 96.8 0.014 3E-07 46.1 8.9 62 75-136 310-375 (677)
152 cd00268 DEADc DEAD-box helicas 96.8 0.022 4.8E-07 38.2 8.9 56 75-134 68-127 (203)
153 PRK10689 transcription-repair 96.8 0.0098 2.1E-07 50.1 8.3 60 75-134 648-711 (1147)
154 KOG0385|consensus 96.7 0.014 3.1E-07 46.7 8.5 106 32-140 443-554 (971)
155 KOG0389|consensus 96.7 0.016 3.5E-07 46.5 8.3 81 60-140 759-843 (941)
156 KOG0384|consensus 96.6 0.0036 7.8E-08 52.1 4.7 81 60-140 681-766 (1373)
157 KOG0347|consensus 96.6 0.0071 1.5E-07 46.8 6.0 52 79-134 266-321 (731)
158 KOG0926|consensus 96.4 0.021 4.6E-07 46.2 7.8 83 13-98 415-503 (1172)
159 KOG0388|consensus 96.4 0.01 2.2E-07 47.4 6.0 81 60-140 1026-1109(1185)
160 KOG0389|consensus 96.4 0.037 7.9E-07 44.6 8.8 69 67-138 439-511 (941)
161 PRK11057 ATP-dependent DNA hel 96.3 0.041 8.9E-07 43.5 9.0 59 76-134 65-123 (607)
162 KOG1002|consensus 96.3 0.013 2.9E-07 44.9 5.8 71 60-130 618-693 (791)
163 PRK11776 ATP-dependent RNA hel 96.3 0.039 8.4E-07 42.1 8.4 54 77-134 73-131 (460)
164 TIGR00348 hsdR type I site-spe 96.3 0.041 9E-07 44.0 8.7 64 76-139 514-604 (667)
165 PLN03137 ATP-dependent DNA hel 96.1 0.063 1.4E-06 45.2 9.3 59 76-134 500-560 (1195)
166 PRK11634 ATP-dependent RNA hel 96.1 0.054 1.2E-06 43.1 8.6 56 75-134 73-133 (629)
167 PF00270 DEAD: DEAD/DEAH box h 96.1 0.11 2.3E-06 33.6 8.8 56 75-134 43-103 (169)
168 COG0653 SecA Preprotein transl 96.0 0.016 3.5E-07 46.8 5.4 79 59-139 410-490 (822)
169 KOG0390|consensus 95.9 0.096 2.1E-06 42.4 9.1 79 61-140 577-662 (776)
170 PRK04537 ATP-dependent RNA hel 95.8 0.053 1.2E-06 42.6 7.3 54 77-134 85-142 (572)
171 PRK09401 reverse gyrase; Revie 95.7 0.053 1.2E-06 46.1 7.4 60 75-134 122-187 (1176)
172 KOG1123|consensus 95.7 0.096 2.1E-06 40.5 7.9 73 56-133 521-596 (776)
173 KOG0330|consensus 95.6 0.14 2.9E-06 38.3 8.4 67 64-134 117-187 (476)
174 KOG0391|consensus 95.6 0.082 1.8E-06 44.7 7.9 78 62-139 1260-1341(1958)
175 COG0514 RecQ Superfamily II DN 95.6 0.054 1.2E-06 42.5 6.5 59 76-134 57-115 (590)
176 PRK11192 ATP-dependent RNA hel 95.5 0.075 1.6E-06 40.2 7.1 55 76-134 73-131 (434)
177 KOG0949|consensus 95.5 0.014 3.1E-07 48.0 3.2 38 103-140 965-1002(1330)
178 PRK01297 ATP-dependent RNA hel 95.5 0.17 3.8E-06 38.8 8.9 55 77-134 163-221 (475)
179 COG1197 Mfd Transcription-repa 95.4 0.1 2.2E-06 43.8 7.7 60 75-134 642-705 (1139)
180 PRK04837 ATP-dependent RNA hel 95.4 0.093 2E-06 39.6 7.1 54 77-134 84-141 (423)
181 cd01524 RHOD_Pyr_redox Member 95.3 0.04 8.6E-07 32.2 4.1 36 76-111 51-86 (90)
182 PF02399 Herpes_ori_bp: Origin 95.2 0.39 8.4E-06 39.2 10.1 124 11-140 179-340 (824)
183 TIGR03817 DECH_helic helicase/ 94.9 0.2 4.3E-06 40.8 8.1 55 75-134 80-137 (742)
184 KOG0331|consensus 94.9 0.13 2.7E-06 39.9 6.6 55 76-134 165-223 (519)
185 PRK10590 ATP-dependent RNA hel 94.8 0.19 4.1E-06 38.4 7.5 54 77-134 76-133 (456)
186 cd01523 RHOD_Lact_B Member of 94.8 0.06 1.3E-06 32.0 3.9 37 75-111 60-96 (100)
187 KOG0338|consensus 94.8 0.27 5.9E-06 38.1 7.9 66 65-134 238-310 (691)
188 smart00450 RHOD Rhodanese Homo 94.7 0.11 2.4E-06 30.1 4.8 37 75-111 55-92 (100)
189 PRK12898 secA preprotein trans 94.6 0.34 7.4E-06 38.8 8.4 57 72-134 140-200 (656)
190 KOG0334|consensus 94.5 0.16 3.5E-06 42.0 6.6 52 79-134 441-496 (997)
191 PRK13766 Hef nuclease; Provisi 94.4 0.31 6.7E-06 39.7 8.2 55 75-134 57-115 (773)
192 TIGR00963 secA preprotein tran 94.4 0.31 6.8E-06 39.5 8.0 63 67-135 88-154 (745)
193 cd01529 4RHOD_Repeats Member o 94.4 0.11 2.5E-06 30.5 4.5 37 75-111 55-92 (96)
194 smart00115 CASc Caspase, inter 94.4 0.6 1.3E-05 32.7 8.6 63 75-139 7-84 (241)
195 KOG0385|consensus 94.4 0.41 8.9E-06 38.9 8.4 57 75-134 216-275 (971)
196 KOG0339|consensus 94.4 0.27 5.8E-06 38.2 7.1 55 76-134 295-354 (731)
197 cd00046 DEXDc DEAD-like helica 94.3 0.69 1.5E-05 28.2 8.4 57 75-135 29-88 (144)
198 COG4096 HsdR Type I site-speci 94.1 0.47 1E-05 38.8 8.2 73 66-140 412-495 (875)
199 cd01518 RHOD_YceA Member of th 94.0 0.16 3.5E-06 30.2 4.6 37 75-111 60-97 (101)
200 PRK13104 secA preprotein trans 93.9 0.62 1.3E-05 38.6 8.8 57 72-134 119-179 (896)
201 cd01534 4RHOD_Repeat_3 Member 93.8 0.14 3.1E-06 30.1 4.0 36 76-111 56-91 (95)
202 PTZ00110 helicase; Provisional 93.7 0.41 8.8E-06 37.6 7.3 54 77-134 204-261 (545)
203 PRK09751 putative ATP-dependen 93.6 0.71 1.5E-05 40.4 8.9 54 77-134 38-107 (1490)
204 cd01526 RHOD_ThiF Member of th 93.5 0.1 2.2E-06 32.3 3.2 37 75-111 71-109 (122)
205 cd01527 RHOD_YgaP Member of th 93.2 0.22 4.7E-06 29.4 4.2 36 76-111 54-90 (99)
206 PRK09200 preprotein translocas 93.2 0.7 1.5E-05 37.9 8.0 62 67-134 110-176 (790)
207 cd01521 RHOD_PspE2 Member of t 93.1 0.22 4.7E-06 30.2 4.1 37 75-111 63-101 (110)
208 cd01444 GlpE_ST GlpE sulfurtra 93.1 0.44 9.5E-06 27.8 5.3 45 67-111 46-92 (96)
209 cd00158 RHOD Rhodanese Homolog 93.1 0.28 6E-06 27.9 4.4 37 75-111 49-86 (89)
210 PRK05320 rhodanese superfamily 93.0 0.31 6.7E-06 34.5 5.1 39 74-112 173-212 (257)
211 cd01449 TST_Repeat_2 Thiosulfa 92.9 0.38 8.3E-06 29.3 5.1 46 65-110 64-113 (118)
212 cd01520 RHOD_YbbB Member of th 92.9 0.18 4E-06 31.5 3.6 38 75-112 85-123 (128)
213 KOG0343|consensus 92.8 0.28 6.1E-06 38.4 5.0 51 79-134 144-198 (758)
214 cd01528 RHOD_2 Member of the R 92.8 0.21 4.5E-06 29.7 3.7 37 76-112 58-95 (101)
215 PRK13103 secA preprotein trans 92.8 0.97 2.1E-05 37.5 8.3 66 64-135 111-180 (913)
216 cd01532 4RHOD_Repeat_1 Member 92.8 0.27 5.8E-06 28.8 4.0 36 76-111 50-88 (92)
217 cd00032 CASc Caspase, interleu 92.7 1.5 3.2E-05 30.7 8.3 49 75-124 8-68 (243)
218 cd01533 4RHOD_Repeat_2 Member 92.6 0.22 4.8E-06 30.0 3.6 37 76-112 66-104 (109)
219 cd01525 RHOD_Kc Member of the 92.4 0.39 8.5E-06 28.6 4.6 36 76-111 65-101 (105)
220 COG1111 MPH1 ERCC4-like helica 92.3 0.95 2.1E-05 35.1 7.2 59 70-134 53-115 (542)
221 cd01519 RHOD_HSP67B2 Member of 92.1 0.24 5.2E-06 29.6 3.3 36 76-111 66-102 (106)
222 cd01447 Polysulfide_ST Polysul 91.9 0.18 3.9E-06 29.9 2.6 37 75-111 60-97 (103)
223 KOG0329|consensus 91.8 0.53 1.2E-05 33.5 5.0 53 78-134 112-169 (387)
224 PRK12899 secA preprotein trans 91.5 1.6 3.6E-05 36.5 8.2 53 76-134 135-191 (970)
225 PRK12904 preprotein translocas 91.4 1.7 3.6E-05 35.9 8.1 64 65-134 111-178 (830)
226 cd01448 TST_Repeat_1 Thiosulfa 91.3 0.5 1.1E-05 29.0 4.2 37 75-111 78-116 (122)
227 smart00487 DEXDc DEAD-like hel 91.1 0.74 1.6E-05 29.9 5.2 43 2-44 150-192 (201)
228 KOG0342|consensus 91.1 1 2.3E-05 34.7 6.3 53 78-134 156-213 (543)
229 PRK02362 ski2-like helicase; P 90.7 0.64 1.4E-05 37.8 5.3 53 75-134 66-121 (737)
230 KOG0350|consensus 90.7 0.7 1.5E-05 35.8 5.1 68 67-134 204-278 (620)
231 cd01535 4RHOD_Repeat_4 Member 90.6 1.2 2.6E-05 28.6 5.6 46 66-111 38-85 (145)
232 COG1205 Distinct helicase fami 90.6 1.6 3.5E-05 36.2 7.5 56 75-134 114-175 (851)
233 TIGR00631 uvrb excinuclease AB 90.4 3.3 7.1E-05 33.5 8.8 79 55-134 34-139 (655)
234 smart00487 DEXDc DEAD-like hel 90.3 3.5 7.5E-05 26.7 8.2 55 76-134 54-113 (201)
235 PRK01415 hypothetical protein; 90.1 0.78 1.7E-05 32.3 4.7 39 75-113 170-209 (247)
236 PRK13767 ATP-dependent helicas 90.0 1.6 3.4E-05 36.4 7.0 54 77-134 85-154 (876)
237 COG2519 GCD14 tRNA(1-methylade 89.9 3.7 8.1E-05 29.1 7.8 67 33-101 143-213 (256)
238 PF02602 HEM4: Uroporphyrinoge 89.9 0.59 1.3E-05 32.0 4.0 73 61-135 101-177 (231)
239 KOG0340|consensus 89.9 1.5 3.3E-05 32.6 6.1 52 79-134 78-133 (442)
240 PF01751 Toprim: Toprim domain 89.9 0.9 2E-05 27.0 4.3 57 79-135 1-69 (100)
241 TIGR02562 cas3_yersinia CRISPR 89.7 1.6 3.4E-05 37.0 6.7 62 79-140 759-852 (1110)
242 KOG4439|consensus 89.6 2.8 6E-05 34.1 7.7 85 55-139 722-812 (901)
243 PF02142 MGS: MGS-like domain 89.3 0.31 6.8E-06 28.8 2.0 43 92-134 22-68 (95)
244 cd01445 TST_Repeats Thiosulfat 89.3 1.7 3.6E-05 27.7 5.4 47 65-111 81-134 (138)
245 cd06578 HemD Uroporphyrinogen- 88.9 5.6 0.00012 27.0 9.9 75 59-134 103-181 (239)
246 PRK10287 thiosulfate:cyanide s 88.7 2 4.4E-05 26.0 5.2 36 76-111 60-95 (104)
247 PRK00254 ski2-like helicase; P 88.6 1.7 3.8E-05 35.3 6.3 53 75-134 67-122 (720)
248 PLN00206 DEAD-box ATP-dependen 88.4 2.9 6.3E-05 32.7 7.2 55 76-134 196-254 (518)
249 smart00851 MGS MGS-like domain 88.3 0.83 1.8E-05 26.6 3.3 41 93-134 23-63 (90)
250 PRK05928 hemD uroporphyrinogen 88.2 4.4 9.5E-05 27.9 7.4 76 59-134 106-185 (249)
251 cd01522 RHOD_1 Member of the R 88.1 0.93 2E-05 27.8 3.6 38 75-112 63-101 (117)
252 PRK05298 excinuclease ABC subu 88.1 5.9 0.00013 32.0 8.8 78 56-134 38-142 (652)
253 KOG0345|consensus 88.0 2.6 5.6E-05 32.6 6.4 53 79-134 82-139 (567)
254 PTZ00424 helicase 45; Provisio 88.0 5.6 0.00012 29.6 8.3 56 75-134 95-154 (401)
255 KOG0335|consensus 87.9 1.8 3.8E-05 33.4 5.5 54 77-134 153-210 (482)
256 KOG0348|consensus 87.8 1.1 2.4E-05 35.2 4.4 51 79-134 214-270 (708)
257 PRK00162 glpE thiosulfate sulf 87.8 2.1 4.6E-05 25.6 5.0 45 67-111 48-94 (108)
258 TIGR02621 cas3_GSU0051 CRISPR- 87.5 2 4.4E-05 35.6 5.9 55 76-134 61-143 (844)
259 PLN02160 thiosulfate sulfurtra 87.4 1.1 2.4E-05 28.4 3.7 37 75-111 80-117 (136)
260 PRK05752 uroporphyrinogen-III 87.4 6 0.00013 27.8 7.7 59 76-134 129-190 (255)
261 TIGR03714 secA2 accessory Sec 87.2 4.8 0.0001 33.1 7.8 61 68-134 103-172 (762)
262 PRK00142 putative rhodanese-re 87.1 1.4 3.1E-05 32.1 4.6 38 75-112 170-208 (314)
263 KOG4284|consensus 87.1 1.3 2.9E-05 35.6 4.5 58 72-134 89-151 (980)
264 TIGR00696 wecB_tagA_cpsF bacte 87.1 6.9 0.00015 26.1 8.9 55 78-132 50-106 (177)
265 cd01530 Cdc25 Cdc25 phosphatas 87.1 1.1 2.5E-05 27.7 3.5 37 75-111 67-117 (121)
266 TIGR02981 phageshock_pspE phag 86.9 1.5 3.3E-05 26.3 3.9 35 76-110 58-92 (101)
267 KOG0386|consensus 86.5 2.5 5.3E-05 35.6 5.9 81 60-140 708-793 (1157)
268 TIGR00596 rad1 DNA repair prot 86.5 1.8 3.8E-05 35.8 5.1 40 59-98 267-317 (814)
269 KOG0951|consensus 86.5 12 0.00025 32.9 9.7 127 5-134 1282-1439(1674)
270 PF11019 DUF2608: Protein of u 86.4 9.4 0.0002 27.0 10.2 106 3-109 87-211 (252)
271 PRK11493 sseA 3-mercaptopyruva 86.2 2.4 5.3E-05 30.3 5.3 47 65-111 217-267 (281)
272 TIGR03865 PQQ_CXXCW PQQ-depend 86.2 1.5 3.3E-05 28.7 3.9 37 75-111 115-153 (162)
273 PRK06827 phosphoribosylpyropho 86.1 3.4 7.5E-05 31.1 6.2 59 77-136 265-329 (382)
274 KOG0352|consensus 86.1 1.6 3.4E-05 33.5 4.3 59 76-134 61-121 (641)
275 KOG1015|consensus 85.8 5 0.00011 34.1 7.2 81 60-140 1124-1232(1567)
276 PF14617 CMS1: U3-containing 9 85.4 2.3 5E-05 30.1 4.7 55 77-134 127-185 (252)
277 KOG0346|consensus 84.8 3.8 8.3E-05 31.5 5.8 54 77-134 94-153 (569)
278 PLN02723 3-mercaptopyruvate su 84.6 3.6 7.7E-05 30.1 5.6 47 65-111 255-305 (320)
279 PRK12326 preprotein translocas 84.5 8.2 0.00018 31.7 7.8 65 64-134 107-175 (764)
280 smart00492 HELICc3 helicase su 84.4 5.8 0.00013 25.3 5.9 52 89-140 4-62 (141)
281 PF00581 Rhodanese: Rhodanese- 84.2 1.2 2.6E-05 26.4 2.6 36 76-111 67-108 (113)
282 PRK09189 uroporphyrinogen-III 84.1 7.5 0.00016 26.9 6.9 72 62-134 102-178 (240)
283 KOG0351|consensus 84.0 3.7 8E-05 34.6 5.9 58 77-134 305-364 (941)
284 cd06533 Glyco_transf_WecG_TagA 83.9 10 0.00022 25.1 8.7 57 76-132 46-105 (171)
285 smart00493 TOPRIM topoisomeras 83.5 5.7 0.00012 21.9 6.6 55 79-135 2-56 (76)
286 PF03808 Glyco_tran_WecB: Glyc 83.5 10 0.00023 25.0 8.8 56 77-132 49-107 (172)
287 cd01446 DSP_MapKP N-terminal r 83.3 4 8.6E-05 25.4 4.8 37 75-111 74-122 (132)
288 KOG0341|consensus 82.8 2.3 5.1E-05 32.2 4.0 52 79-134 249-310 (610)
289 COG0607 PspE Rhodanese-related 82.3 1.7 3.7E-05 25.8 2.7 37 75-111 60-97 (110)
290 COG1204 Superfamily II helicas 82.2 8 0.00017 32.0 7.1 61 67-134 65-130 (766)
291 PRK05597 molybdopterin biosynt 82.0 2.3 5.1E-05 31.5 3.8 37 75-111 313-350 (355)
292 PRK15327 type III secretion sy 81.9 17 0.00036 27.6 8.2 64 59-125 167-241 (393)
293 PRK09860 putative alcohol dehy 81.8 20 0.00043 27.0 9.2 71 62-132 17-94 (383)
294 PRK12906 secA preprotein trans 81.6 12 0.00025 31.1 7.8 65 64-134 109-177 (796)
295 PRK13958 N-(5'-phosphoribosyl) 81.2 15 0.00032 25.1 7.8 49 64-114 39-89 (207)
296 PF08704 GCD14: tRNA methyltra 81.0 6.6 0.00014 27.7 5.6 52 49-101 112-164 (247)
297 cd03418 GRX_GRXb_1_3_like Glut 80.8 7.3 0.00016 21.3 7.5 53 79-131 2-56 (75)
298 cd03027 GRX_DEP Glutaredoxin ( 80.6 7.5 0.00016 21.4 7.7 57 78-134 2-59 (73)
299 KOG0384|consensus 80.1 8.2 0.00018 33.4 6.5 70 64-134 407-483 (1373)
300 TIGR03167 tRNA_sel_U_synt tRNA 80.1 6.3 0.00014 28.8 5.4 46 77-123 75-121 (311)
301 KOG0386|consensus 79.9 4.7 0.0001 34.1 5.0 70 64-134 431-501 (1157)
302 COG0300 DltE Short-chain dehyd 79.6 20 0.00043 25.7 9.2 68 65-133 20-91 (265)
303 PF00697 PRAI: N-(5'phosphorib 79.6 15 0.00032 24.8 6.8 51 63-115 36-86 (197)
304 COG0353 RecR Recombinational D 79.4 13 0.00029 25.2 6.3 63 76-139 78-149 (198)
305 cd03031 GRX_GRX_like Glutaredo 79.1 15 0.00032 23.8 7.5 45 78-122 1-52 (147)
306 cd01422 MGS Methylglyoxal synt 79.0 4.8 0.0001 24.8 3.9 42 93-135 37-79 (115)
307 PHA02558 uvsW UvsW helicase; P 78.9 15 0.00033 28.6 7.5 48 76-134 158-209 (501)
308 COG0135 TrpF Phosphoribosylant 78.4 19 0.00041 24.8 8.4 58 63-122 39-97 (208)
309 PRK05600 thiamine biosynthesis 78.3 5.3 0.00011 29.9 4.7 37 75-111 331-369 (370)
310 cd01443 Cdc25_Acr2p Cdc25 enzy 77.7 12 0.00025 22.6 5.4 37 75-111 65-109 (113)
311 PF13685 Fe-ADH_2: Iron-contai 77.4 23 0.00049 25.1 7.5 68 65-132 8-81 (250)
312 cd01542 PBP1_TreR_like Ligand- 77.4 16 0.00035 25.0 6.7 36 94-132 49-84 (259)
313 PRK00553 ribose-phosphate pyro 77.4 11 0.00023 27.9 5.9 61 76-136 218-284 (332)
314 PRK13107 preprotein translocas 77.2 18 0.0004 30.5 7.6 63 66-134 113-179 (908)
315 PRK12902 secA preprotein trans 77.2 21 0.00045 30.2 7.9 65 64-134 114-182 (939)
316 COG1587 HemD Uroporphyrinogen- 76.8 23 0.00049 24.8 8.2 78 58-135 103-184 (248)
317 PRK05728 DNA polymerase III su 76.8 14 0.00031 23.6 5.8 40 59-98 10-51 (142)
318 PRK08811 uroporphyrinogen-III 76.5 25 0.00053 25.0 8.1 76 58-134 119-198 (266)
319 smart00491 HELICc2 helicase su 76.3 11 0.00024 24.1 5.2 52 89-140 4-63 (142)
320 PF12689 Acid_PPase: Acid Phos 76.3 20 0.00043 23.8 10.4 116 1-124 49-168 (169)
321 PLN02723 3-mercaptopyruvate su 76.1 7.7 0.00017 28.4 4.9 48 64-111 88-140 (320)
322 COG1054 Predicted sulfurtransf 75.9 9.3 0.0002 27.8 5.1 49 64-112 160-209 (308)
323 PF13245 AAA_19: Part of AAA d 75.6 5.5 0.00012 22.5 3.3 38 59-96 19-62 (76)
324 PF04364 DNA_pol3_chi: DNA pol 75.5 15 0.00032 23.3 5.6 41 59-99 10-52 (137)
325 COG2247 LytB Putative cell wal 75.3 30 0.00066 25.5 7.6 51 73-123 73-123 (337)
326 PF02617 ClpS: ATP-dependent C 75.2 13 0.00028 21.2 5.0 25 76-100 47-71 (82)
327 COG4098 comFA Superfamily II D 74.7 25 0.00054 26.5 7.1 72 52-134 118-193 (441)
328 cd01294 DHOase Dihydroorotase 74.6 4.4 9.5E-05 29.7 3.4 26 111-136 219-244 (335)
329 PRK08762 molybdopterin biosynt 74.6 5.6 0.00012 29.7 4.0 36 75-110 56-92 (376)
330 PRK11493 sseA 3-mercaptopyruva 74.3 8.1 0.00018 27.6 4.6 48 64-111 72-124 (281)
331 PF06506 PrpR_N: Propionate ca 73.9 8.7 0.00019 25.4 4.4 123 5-134 2-133 (176)
332 PRK05234 mgsA methylglyoxal sy 73.5 11 0.00024 24.2 4.7 42 92-134 41-83 (142)
333 cd01423 MGS_CPS_I_III Methylgl 73.5 6.1 0.00013 24.1 3.4 43 92-134 35-79 (116)
334 PRK01172 ski2-like helicase; P 73.4 13 0.00028 30.1 6.0 52 76-134 65-119 (674)
335 COG0074 SucD Succinyl-CoA synt 73.2 33 0.00071 24.9 8.8 68 61-128 51-118 (293)
336 PRK11784 tRNA 2-selenouridine 72.8 21 0.00045 26.6 6.5 48 75-123 87-135 (345)
337 PF07517 SecA_DEAD: SecA DEAD- 72.0 34 0.00073 24.5 9.2 65 64-134 106-174 (266)
338 PF04273 DUF442: Putative phos 71.9 19 0.00041 22.0 5.2 44 50-94 57-104 (110)
339 PRK07878 molybdopterin biosynt 71.6 6.5 0.00014 29.6 3.7 37 75-111 342-379 (392)
340 PRK06646 DNA polymerase III su 71.4 23 0.0005 23.1 5.8 44 54-97 5-50 (154)
341 PF02670 DXP_reductoisom: 1-de 71.4 23 0.0005 22.4 7.4 71 61-139 33-103 (129)
342 cd00532 MGS-like MGS-like doma 71.0 6.3 0.00014 24.0 3.0 43 92-135 34-77 (112)
343 PLN03142 Probable chromatin-re 70.8 23 0.00051 30.4 7.0 56 76-134 219-277 (1033)
344 cd00860 ThrRS_anticodon ThrRS 70.6 17 0.00037 20.6 6.4 37 78-114 3-42 (91)
345 TIGR02554 PrgH type III secret 70.2 29 0.00062 26.4 6.7 66 58-126 161-237 (389)
346 cd06280 PBP1_LacI_like_4 Ligan 69.9 31 0.00068 23.7 6.7 42 67-109 21-64 (263)
347 PRK07411 hypothetical protein; 69.7 8.5 0.00019 29.0 4.0 38 75-112 341-378 (390)
348 PRK02269 ribose-phosphate pyro 69.4 21 0.00045 26.3 5.8 58 75-136 216-279 (320)
349 cd01132 F1_ATPase_alpha F1 ATP 68.7 41 0.00089 24.2 7.2 11 87-97 110-120 (274)
350 cd01134 V_A-ATPase_A V/A-type 68.7 48 0.001 25.0 7.6 23 89-111 242-264 (369)
351 KOG1002|consensus 68.2 28 0.00062 27.6 6.4 65 64-134 219-285 (791)
352 cd05212 NAD_bind_m-THF_DH_Cycl 68.0 29 0.00063 22.2 8.1 64 64-134 12-79 (140)
353 cd06270 PBP1_GalS_like Ligand 67.9 33 0.00071 23.6 6.5 36 92-131 47-83 (268)
354 cd03028 GRX_PICOT_like Glutare 67.8 21 0.00046 20.6 7.6 47 75-121 6-58 (90)
355 PF14824 Sirohm_synth_M: Siroh 67.7 4.8 0.0001 18.6 1.5 13 123-135 1-13 (30)
356 PRK07199 phosphoribosylpyropho 67.4 31 0.00067 25.1 6.3 50 83-136 221-273 (301)
357 PF05221 AdoHcyase: S-adenosyl 67.2 26 0.00057 25.1 5.7 75 47-122 40-114 (268)
358 PF00462 Glutaredoxin: Glutare 67.1 16 0.00036 19.0 7.4 52 80-131 2-54 (60)
359 PRK07960 fliI flagellum-specif 66.8 43 0.00093 26.0 7.2 62 65-126 218-290 (455)
360 cd08191 HHD 6-hydroxyhexanoate 66.8 52 0.0011 24.7 9.6 69 63-132 10-85 (386)
361 cd08194 Fe-ADH6 Iron-containin 66.6 52 0.0011 24.6 9.6 71 62-132 9-86 (375)
362 KOG0383|consensus 66.6 5.1 0.00011 32.6 2.3 77 62-139 615-696 (696)
363 PRK05451 dihydroorotase; Provi 66.2 8.6 0.00019 28.4 3.4 27 111-137 225-251 (345)
364 cd08186 Fe-ADH8 Iron-containin 66.1 54 0.0012 24.6 9.6 70 63-132 10-90 (383)
365 PRK08972 fliI flagellum-specif 66.1 39 0.00084 26.2 6.8 51 76-126 216-277 (444)
366 TIGR00603 rad25 DNA repair hel 66.0 23 0.0005 29.2 5.9 50 76-134 298-351 (732)
367 cd08190 HOT Hydroxyacid-oxoaci 65.9 57 0.0012 24.8 9.5 71 63-133 10-87 (414)
368 PRK09280 F0F1 ATP synthase sub 65.7 43 0.00094 26.1 7.0 61 66-126 191-263 (463)
369 PF11823 DUF3343: Protein of u 65.6 21 0.00046 19.8 4.5 52 77-128 2-65 (73)
370 PF00465 Fe-ADH: Iron-containi 65.5 52 0.0011 24.4 7.4 69 63-133 10-85 (366)
371 cd01575 PBP1_GntR Ligand-bindi 64.9 41 0.0009 23.0 6.5 39 91-132 46-84 (268)
372 PF01591 6PF2K: 6-phosphofruct 64.8 25 0.00054 24.4 5.2 45 87-131 82-127 (222)
373 cd06296 PBP1_CatR_like Ligand- 64.8 40 0.00086 23.2 6.4 53 76-131 29-83 (270)
374 cd01133 F1-ATPase_beta F1 ATP 64.8 50 0.0011 23.8 7.1 51 76-126 126-188 (274)
375 PF04763 DUF562: Protein of un 64.7 35 0.00075 21.9 7.0 63 71-134 10-85 (146)
376 PRK09629 bifunctional thiosulf 64.6 19 0.00041 29.0 5.1 46 64-109 208-257 (610)
377 PRK13529 malate dehydrogenase; 64.5 15 0.00033 29.2 4.5 53 79-134 101-154 (563)
378 cd06284 PBP1_LacI_like_6 Ligan 64.4 41 0.00088 23.0 6.4 43 67-110 21-65 (267)
379 PF02863 Arg_repressor_C: Argi 64.3 18 0.0004 20.0 3.8 23 76-98 47-69 (70)
380 KOG0326|consensus 64.0 8.6 0.00019 28.5 2.9 56 75-134 152-211 (459)
381 KOG4439|consensus 64.0 18 0.00039 29.8 4.8 52 78-134 385-439 (901)
382 cd01531 Acr2p Eukaryotic arsen 63.4 30 0.00065 20.7 6.1 37 75-111 61-107 (113)
383 PF07652 Flavi_DEAD: Flaviviru 63.2 31 0.00066 22.4 5.0 26 75-100 32-57 (148)
384 PF13871 Helicase_C_4: Helicas 63.0 9.9 0.00021 27.4 3.1 24 117-140 52-75 (278)
385 PF13380 CoA_binding_2: CoA bi 63.0 33 0.00071 21.0 5.4 49 79-130 58-106 (116)
386 cd06293 PBP1_LacI_like_11 Liga 63.0 47 0.001 22.8 6.7 34 76-109 29-64 (269)
387 PF11116 DUF2624: Protein of u 63.0 20 0.00043 21.0 3.7 34 85-124 32-65 (85)
388 cd06354 PBP1_BmpA_PnrA_like Pe 62.7 42 0.00091 23.3 6.2 16 93-108 50-65 (265)
389 TIGR00856 pyrC_dimer dihydroor 62.6 11 0.00025 27.8 3.4 26 111-136 222-247 (341)
390 cd08193 HVD 5-hydroxyvalerate 62.6 63 0.0014 24.2 9.4 70 63-132 13-89 (376)
391 cd01424 MGS_CPS_II Methylglyox 62.5 22 0.00048 21.3 4.2 41 92-134 35-75 (110)
392 PRK09629 bifunctional thiosulf 62.3 19 0.00041 29.0 4.8 47 65-111 67-118 (610)
393 cd08176 LPO Lactadehyde:propan 62.3 64 0.0014 24.2 9.6 71 62-132 14-91 (377)
394 PF00070 Pyr_redox: Pyridine n 62.1 26 0.00056 19.5 7.1 49 87-135 9-63 (80)
395 PF10740 DUF2529: Protein of u 62.0 21 0.00045 23.8 4.1 33 75-107 81-115 (172)
396 PF12710 HAD: haloacid dehalog 62.0 41 0.00089 21.9 7.2 87 4-91 96-190 (192)
397 PRK09281 F0F1 ATP synthase sub 61.8 57 0.0012 25.7 7.1 39 76-114 218-267 (502)
398 COG4087 Soluble P-type ATPase 61.7 35 0.00076 21.9 4.9 54 79-132 46-100 (152)
399 PF03853 YjeF_N: YjeF-related 61.7 26 0.00056 23.0 4.7 33 75-107 24-59 (169)
400 cd00401 AdoHcyase S-adenosyl-L 61.0 74 0.0016 24.4 7.8 64 59-122 44-107 (413)
401 PRK01221 putative deoxyhypusin 60.9 30 0.00066 25.4 5.2 48 87-134 42-90 (312)
402 PF13167 GTP-bdg_N: GTP-bindin 60.8 33 0.00072 20.4 5.9 37 86-122 43-79 (95)
403 TIGR01587 cas3_core CRISPR-ass 60.4 65 0.0014 23.6 7.3 37 75-111 28-65 (358)
404 PLN02522 ATP citrate (pro-S)-l 60.2 78 0.0017 25.7 7.7 67 62-128 64-132 (608)
405 PRK04923 ribose-phosphate pyro 59.9 41 0.00089 24.8 5.8 50 83-136 227-279 (319)
406 PF00258 Flavodoxin_1: Flavodo 59.8 40 0.00086 21.0 5.2 27 84-110 9-35 (143)
407 cd06273 PBP1_GntR_like_1 This 59.6 54 0.0012 22.5 6.5 54 76-132 29-84 (268)
408 PF07485 DUF1529: Domain of Un 59.5 23 0.00049 22.3 3.9 36 76-111 54-92 (123)
409 cd06318 PBP1_ABC_sugar_binding 59.4 56 0.0012 22.6 6.5 38 93-131 48-85 (282)
410 PRK00934 ribose-phosphate pyro 58.6 46 0.00099 24.0 5.9 50 83-136 214-266 (285)
411 PRK03692 putative UDP-N-acetyl 58.5 62 0.0014 22.8 9.3 56 77-132 106-163 (243)
412 CHL00122 secA preprotein trans 58.5 71 0.0015 27.1 7.4 65 64-134 105-173 (870)
413 PTZ00145 phosphoribosylpyropho 58.4 48 0.0011 25.6 6.1 50 83-136 345-397 (439)
414 PLN02363 phosphoribosylanthran 58.4 46 0.00099 23.7 5.7 49 64-114 85-136 (256)
415 PRK01222 N-(5'-phosphoribosyl) 58.3 57 0.0012 22.3 7.1 49 64-114 41-91 (210)
416 PRK05922 type III secretion sy 58.3 73 0.0016 24.7 7.1 52 75-126 210-272 (434)
417 cd06322 PBP1_ABC_sugar_binding 58.2 58 0.0013 22.3 6.4 54 76-130 29-84 (267)
418 cd06292 PBP1_LacI_like_10 Liga 58.2 58 0.0013 22.4 6.6 42 91-132 46-89 (273)
419 PF00532 Peripla_BP_1: Peripla 58.1 65 0.0014 22.9 6.6 14 89-102 45-58 (279)
420 cd03030 GRX_SH3BGR Glutaredoxi 58.0 37 0.0008 20.0 6.3 38 86-123 16-53 (92)
421 PF10593 Z1: Z1 domain; Inter 57.9 13 0.00029 26.0 3.0 50 86-140 93-149 (239)
422 COG1454 EutG Alcohol dehydroge 57.9 81 0.0018 23.9 8.5 71 62-132 15-92 (377)
423 PRK05476 S-adenosyl-L-homocyst 57.6 86 0.0019 24.2 7.4 60 61-120 58-117 (425)
424 PF09419 PGP_phosphatase: Mito 57.6 54 0.0012 21.8 7.8 58 64-125 65-130 (168)
425 cd08584 PI-PLCc_GDPD_SF_unchar 57.5 19 0.0004 24.5 3.5 46 90-135 139-188 (192)
426 KOG0336|consensus 57.4 71 0.0015 24.9 6.7 55 76-134 294-351 (629)
427 TIGR03324 alt_F1F0_F1_al alter 57.4 72 0.0016 25.2 7.0 41 76-116 218-269 (497)
428 KOG0333|consensus 57.4 41 0.0009 26.8 5.6 55 75-134 321-380 (673)
429 PF10100 DUF2338: Uncharacteri 57.4 87 0.0019 24.1 7.3 104 4-117 98-210 (429)
430 PF01113 DapB_N: Dihydrodipico 57.3 43 0.00094 20.6 6.5 55 78-134 69-123 (124)
431 PRK06936 type III secretion sy 57.1 72 0.0016 24.7 6.9 25 89-113 240-264 (439)
432 cd01135 V_A-ATPase_B V/A-type 56.8 72 0.0016 23.0 6.9 25 90-114 154-179 (276)
433 cd01541 PBP1_AraR Ligand-bindi 56.8 62 0.0014 22.3 6.6 40 93-132 48-89 (273)
434 TIGR00936 ahcY adenosylhomocys 56.6 89 0.0019 24.0 7.6 71 59-130 40-110 (406)
435 PRK05370 argininosuccinate syn 56.4 69 0.0015 24.9 6.6 55 70-124 4-62 (447)
436 cd06315 PBP1_ABC_sugar_binding 56.2 65 0.0014 22.5 6.3 40 92-132 48-87 (280)
437 TIGR02679 conserved hypothetic 56.2 63 0.0014 24.6 6.4 55 55-113 253-310 (385)
438 PF09480 PrgH: Type III secret 56.2 76 0.0016 24.1 6.8 62 60-124 153-225 (375)
439 PF00106 adh_short: short chai 56.0 49 0.0011 20.9 9.0 58 77-134 26-88 (167)
440 TIGR02637 RhaS rhamnose ABC tr 55.9 70 0.0015 22.6 7.2 67 64-135 173-241 (302)
441 TIGR01617 arsC_related transcr 55.8 45 0.00097 20.3 5.8 51 84-134 7-59 (117)
442 KOG0353|consensus 55.8 42 0.00091 25.7 5.3 60 75-134 133-194 (695)
443 cd08185 Fe-ADH1 Iron-containin 55.8 85 0.0018 23.5 9.5 70 62-132 12-89 (380)
444 COG1058 CinA Predicted nucleot 55.7 65 0.0014 23.0 6.1 47 87-134 21-68 (255)
445 TIGR03498 FliI_clade3 flagella 55.7 63 0.0014 24.8 6.4 29 89-117 218-246 (418)
446 COG1656 Uncharacterized conser 55.6 40 0.00086 22.3 4.6 44 86-134 12-55 (165)
447 cd06304 PBP1_BmpA_like Peripla 55.5 64 0.0014 22.3 6.1 18 91-108 47-64 (260)
448 PF14572 Pribosyl_synth: Phosp 55.2 45 0.00096 22.6 4.9 58 75-136 82-145 (184)
449 PRK01259 ribose-phosphate pyro 55.1 59 0.0013 23.8 6.0 49 84-136 219-270 (309)
450 cd06286 PBP1_CcpB_like Ligand- 55.0 65 0.0014 22.0 6.6 15 93-107 48-62 (260)
451 TIGR00096 probable S-adenosylm 54.9 78 0.0017 22.8 6.6 56 79-136 27-82 (276)
452 TIGR01041 ATP_syn_B_arch ATP s 54.5 88 0.0019 24.4 7.0 26 89-114 225-251 (458)
453 PRK09492 treR trehalose repres 54.3 76 0.0016 22.5 6.6 7 96-102 114-120 (315)
454 PRK02458 ribose-phosphate pyro 54.2 55 0.0012 24.1 5.7 57 76-136 218-280 (323)
455 KOG1180|consensus 54.2 68 0.0015 25.9 6.3 55 77-134 116-170 (678)
456 TIGR02634 xylF D-xylose ABC tr 54.0 78 0.0017 22.5 6.9 37 94-131 48-84 (302)
457 PRK07594 type III secretion sy 53.8 78 0.0017 24.5 6.6 27 89-115 233-259 (433)
458 PRK00321 rdgC recombination as 53.8 81 0.0018 23.1 6.5 45 77-124 134-180 (303)
459 CHL00059 atpA ATP synthase CF1 53.7 73 0.0016 25.0 6.5 26 89-114 221-246 (485)
460 TIGR00282 metallophosphoestera 53.6 58 0.0013 23.4 5.6 46 87-134 131-177 (266)
461 COG2217 ZntA Cation transport 53.6 69 0.0015 26.5 6.6 56 71-131 549-604 (713)
462 cd06281 PBP1_LacI_like_5 Ligan 53.5 71 0.0015 22.0 6.6 63 67-132 21-85 (269)
463 TIGR02417 fruct_sucro_rep D-fr 53.5 80 0.0017 22.6 6.6 38 92-131 108-145 (327)
464 PRK10355 xylF D-xylose transpo 53.4 86 0.0019 22.8 6.9 35 96-131 77-111 (330)
465 PF01206 TusA: Sulfurtransfera 53.3 36 0.00078 18.5 5.3 41 66-106 16-57 (70)
466 cd00952 CHBPH_aldolase Trans-o 53.1 87 0.0019 22.8 6.7 24 110-133 58-84 (309)
467 cd01538 PBP1_ABC_xylose_bindin 53.0 77 0.0017 22.2 6.6 40 92-132 47-86 (288)
468 cd08192 Fe-ADH7 Iron-containin 53.0 94 0.002 23.2 9.2 70 63-132 11-87 (370)
469 TIGR02196 GlrX_YruB Glutaredox 52.9 34 0.00073 18.0 6.8 48 84-131 8-55 (74)
470 PF09413 DUF2007: Domain of un 52.8 36 0.00078 18.3 3.8 32 79-110 2-33 (67)
471 cd08182 HEPD Hydroxyethylphosp 52.6 95 0.002 23.1 9.5 70 63-132 10-83 (367)
472 TIGR00321 dhys deoxyhypusine s 52.5 65 0.0014 23.6 5.8 46 89-134 34-81 (301)
473 cd08187 BDH Butanol dehydrogen 52.5 98 0.0021 23.2 9.7 70 62-132 15-92 (382)
474 PRK09427 bifunctional indole-3 52.5 1.1E+02 0.0024 23.8 8.5 53 64-118 295-347 (454)
475 TIGR02313 HpaI-NOT-DapA 2,4-di 52.0 84 0.0018 22.7 6.4 24 110-133 50-76 (294)
476 TIGR03305 alt_F1F0_F1_bet alte 51.9 97 0.0021 24.1 6.9 27 89-115 219-246 (449)
477 TIGR03158 cas3_cyano CRISPR-as 51.9 97 0.0021 23.0 7.2 38 76-113 39-84 (357)
478 COG4152 ABC-type uncharacteriz 51.6 81 0.0018 22.8 5.9 47 63-109 165-213 (300)
479 cd06305 PBP1_methylthioribose_ 51.6 77 0.0017 21.8 6.7 34 98-132 53-86 (273)
480 COG0462 PrsA Phosphoribosylpyr 51.5 63 0.0014 23.8 5.6 49 84-136 225-276 (314)
481 cd06290 PBP1_LacI_like_9 Ligan 51.2 77 0.0017 21.7 6.7 17 91-107 46-62 (265)
482 PTZ00317 NADP-dependent malic 51.2 49 0.0011 26.5 5.3 53 79-134 103-156 (559)
483 TIGR00365 monothiol glutaredox 51.2 50 0.0011 19.5 8.4 47 75-121 10-62 (97)
484 PF03846 SulA: Cell division i 51.2 59 0.0013 20.3 4.7 64 67-132 49-116 (119)
485 cd08172 GlyDH-like1 Glycerol d 51.1 98 0.0021 22.9 9.1 33 100-132 50-82 (347)
486 PRK12597 F0F1 ATP synthase sub 51.0 1.1E+02 0.0024 23.9 7.0 26 89-114 224-250 (461)
487 PLN02369 ribose-phosphate pyro 51.0 75 0.0016 23.2 6.0 49 84-136 213-264 (302)
488 cd06274 PBP1_FruR Ligand bindi 50.9 78 0.0017 21.7 6.5 54 76-132 29-84 (264)
489 PRK02301 putative deoxyhypusin 50.9 59 0.0013 24.0 5.4 46 89-134 46-93 (316)
490 PRK00805 putative deoxyhypusin 50.7 66 0.0014 23.9 5.6 46 89-134 35-82 (329)
491 TIGR01039 atpD ATP synthase, F 50.4 1.2E+02 0.0026 23.7 7.3 25 89-113 224-249 (461)
492 PRK12900 secA preprotein trans 50.4 84 0.0018 27.2 6.7 65 64-134 167-235 (1025)
493 cd06298 PBP1_CcpA_like Ligand- 50.4 79 0.0017 21.6 6.5 36 93-131 48-83 (268)
494 cd08551 Fe-ADH iron-containing 50.2 1E+02 0.0023 22.9 9.8 70 63-132 10-86 (370)
495 KOG0921|consensus 50.1 18 0.00039 30.8 2.8 73 65-137 628-711 (1282)
496 PRK14873 primosome assembly pr 50.0 35 0.00076 27.9 4.5 38 89-134 440-479 (665)
497 PRK10423 transcriptional repre 49.9 92 0.002 22.2 6.7 15 94-108 106-120 (327)
498 PF13407 Peripla_BP_4: Peripla 49.9 81 0.0017 21.5 6.0 68 63-136 170-239 (257)
499 cd06275 PBP1_PurR Ligand-bindi 49.9 82 0.0018 21.6 6.6 19 91-109 46-64 (269)
500 PRK02812 ribose-phosphate pyro 49.9 84 0.0018 23.3 6.1 48 83-134 240-290 (330)
No 1
>KOG0328|consensus
Probab=100.00 E-value=9.3e-33 Score=189.81 Aligned_cols=140 Identities=32% Similarity=0.583 Sum_probs=133.3
Q ss_pred CHHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCc-cchHHHHHHHHhhCCCCc
Q psy13287 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQE-RQKVHCLNTLFSKLQINQ 78 (140)
Q Consensus 1 ~l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~ 78 (140)
|+.+|.+++|++.|.+++|||+|..+.+....++.+|..+-++ ++...+.+.++|+.++. ++|.+.|+++...+...|
T Consensus 189 Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQ 268 (400)
T KOG0328|consen 189 QIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQ 268 (400)
T ss_pred HHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehhe
Confidence 5778999999999999999999999999999999999999888 56788889999999975 569999999999999999
Q ss_pred EEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 79 SIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++|||||++.++++.+.+++.++.|..+||+|++++|.+++++||.|+.+||+|||+-||||
T Consensus 269 avIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGi 330 (400)
T KOG0328|consen 269 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGI 330 (400)
T ss_pred EEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 2
>KOG0326|consensus
Probab=99.97 E-value=4.9e-32 Score=188.95 Aligned_cols=139 Identities=82% Similarity=1.294 Sum_probs=136.3
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEE
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSII 81 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lI 81 (140)
+++++..+|+++|++++|||+|-.+.....+++++|..|...++..+..+.|+|.++++.+|+.-|..+..++...|.||
T Consensus 248 ~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsII 327 (459)
T KOG0326|consen 248 VEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSII 327 (459)
T ss_pred HHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcccceEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 82 FCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 82 F~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||||.+.+|.+|+++.+.|+.|.++|+.|-++.|+.++.+|++|.++.|||||++-||+
T Consensus 328 FCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGI 386 (459)
T KOG0326|consen 328 FCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGI 386 (459)
T ss_pred EeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999996
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.2e-30 Score=194.98 Aligned_cols=140 Identities=30% Similarity=0.523 Sum_probs=132.5
Q ss_pred CHHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-Ccc--cCCCeEEEEEEcCccc-hHHHHHHHHhhCCC
Q psy13287 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EEL--TLKGVTQYYAFVQERQ-KVHCLNTLFSKLQI 76 (140)
Q Consensus 1 ~l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~--~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~ 76 (140)
++..|++.+|.+.|+++||||+|..+..+.+.++++|..+.+. ... ..+.+.|+++.++..+ |...|..+++....
T Consensus 194 ~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~ 273 (513)
T COG0513 194 DIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDE 273 (513)
T ss_pred HHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 4789999999999999999999999999999999999988887 333 7899999999999776 99999999999888
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 77 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.++||||+|+..++.++..|+..|+++..+||++++++|..++++|++|+.++|||||++||||
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGi 337 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGL 337 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccC
Confidence 8999999999999999999999999999999999999999999999999999999999999997
No 4
>KOG0331|consensus
Probab=99.97 E-value=1.6e-30 Score=192.78 Aligned_cols=140 Identities=26% Similarity=0.454 Sum_probs=129.8
Q ss_pred CHHHHHhhC-CCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCC---cccCCCeEEEEEEcCccchHHHHHHHHhhC--
Q psy13287 1 MLDHVISIL-PHERQILLYSATFPLTVKNFMEKHLKDPYEINLME---ELTLKGVTQYYAFVQERQKVHCLNTLFSKL-- 74 (140)
Q Consensus 1 ~l~~il~~~-~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-- 74 (140)
||++|+..+ ++..|++++|||+|.+++.++..++.+|..+.+.. ...+.++.|.+..|++..|...|.++|.+.
T Consensus 259 qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~ 338 (519)
T KOG0331|consen 259 QIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISS 338 (519)
T ss_pred HHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhc
Confidence 588999999 55669999999999999999999999999888873 357889999999999999999999988777
Q ss_pred -CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 75 -QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 75 -~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+.+++||||+|++.|++++..|+..++++..+||+.++++|..+++.|++|+..||||||+|||||
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGL 405 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGL 405 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccC
Confidence 467999999999999999999999999999999999999999999999999999999999999997
No 5
>KOG0333|consensus
Probab=99.96 E-value=4e-28 Score=178.09 Aligned_cols=128 Identities=25% Similarity=0.345 Sum_probs=122.8
Q ss_pred CeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHHHHH
Q psy13287 13 RQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVEL 91 (140)
Q Consensus 13 ~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~ 91 (140)
.|+++||||+||.+..+++.+|.+|.++.++ .+...+.+.|.+..+.+++|...|.++|++....++|||+|+++.|+.
T Consensus 453 rqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~ 532 (673)
T KOG0333|consen 453 RQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADA 532 (673)
T ss_pred eEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHH
Confidence 7999999999999999999999999999998 566778899999999999999999999998878899999999999999
Q ss_pred HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 92 LAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+|+.|.+.|++|..+||+.++++|+.+++.|++|..+||||||+++||+
T Consensus 533 lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGI 581 (673)
T KOG0333|consen 533 LAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGI 581 (673)
T ss_pred HHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCC
Confidence 9999999999999999999999999999999999999999999999997
No 6
>KOG0330|consensus
Probab=99.96 E-value=7.3e-29 Score=176.47 Aligned_cols=139 Identities=29% Similarity=0.522 Sum_probs=133.2
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEE
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSI 80 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~l 80 (140)
++.|++.+|..+|+++||||+|..+.++....+++|..+.+. ....-+++.|+|++++.-+|...|..+|+.......|
T Consensus 225 ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~i 304 (476)
T KOG0330|consen 225 LDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVI 304 (476)
T ss_pred HHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEE
Confidence 688999999999999999999999999999999999999887 5678889999999999999999999999998889999
Q ss_pred EEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 81 IFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 81 IF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
|||+|..++++++-.|+..|+.+..+||.|++..|...+++|++|..+||||||++|||+
T Consensus 305 VF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGL 364 (476)
T KOG0330|consen 305 VFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGL 364 (476)
T ss_pred EEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccC
Confidence 999999999999999999999999999999999999999999999999999999999997
No 7
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.96 E-value=1.2e-27 Score=179.40 Aligned_cols=139 Identities=24% Similarity=0.468 Sum_probs=130.3
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEE
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSII 81 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lI 81 (140)
+..+++.++...|++++|||+|+.+..+...++++|..+.+......+.+.+.++.++..+|...+..++....+.++||
T Consensus 168 l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lV 247 (460)
T PRK11776 168 IDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVV 247 (460)
T ss_pred HHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEE
Confidence 67889999999999999999999999999999999998888765566779999999988889999999998888889999
Q ss_pred EeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 82 FCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 82 F~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||+|++.++.+++.|.+.++.+..+||++++.+|..++++|++|++++|||||+++||+
T Consensus 248 F~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGi 306 (460)
T PRK11776 248 FCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGL 306 (460)
T ss_pred EECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999996
No 8
>KOG0332|consensus
Probab=99.95 E-value=2.1e-27 Score=168.47 Aligned_cols=137 Identities=28% Similarity=0.458 Sum_probs=129.1
Q ss_pred HHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcC-ccchHHHHHHHHhhCCCCcEEE
Q psy13287 4 HVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKLQINQSII 81 (140)
Q Consensus 4 ~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~lI 81 (140)
+|.+.+|++.|.++||||+...+.+.+.+.+.++..+.+. ++....+|.|+++.|+ ..+|++.|.+++.-...++.||
T Consensus 256 rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiI 335 (477)
T KOG0332|consen 256 RIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSII 335 (477)
T ss_pred hhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEE
Confidence 5778888999999999999999999999999999888887 6678899999999996 5679999999888878899999
Q ss_pred EeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 82 FCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 82 F~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||.|+++|++++..|+..|+.|..+||+|.-++|..++++||.|+.+|||+||+.+||+
T Consensus 336 Fc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGi 394 (477)
T KOG0332|consen 336 FCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGI 394 (477)
T ss_pred EEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhccc
Confidence 99999999999999999999999999999999999999999999999999999999996
No 9
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.95 E-value=2.8e-26 Score=176.77 Aligned_cols=139 Identities=20% Similarity=0.355 Sum_probs=129.0
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEE
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSI 80 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~l 80 (140)
+..|++.++..+|+++||||+|+.+..+.+.++.+|..+.+. .....+.+.+.++.+....|.+.|..++......++|
T Consensus 170 i~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~I 249 (629)
T PRK11634 170 VETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAI 249 (629)
T ss_pred HHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEE
Confidence 678899999999999999999999999999999999888776 3456678889988888889999999999887788999
Q ss_pred EEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 81 IFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 81 IF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
|||+|+..++.+++.|.+.|+.+..+||++++.+|..++++|++|++++|||||+++||+
T Consensus 250 VF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGI 309 (629)
T PRK11634 250 IFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309 (629)
T ss_pred EEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999996
No 10
>KOG0327|consensus
Probab=99.95 E-value=7.5e-27 Score=165.76 Aligned_cols=138 Identities=31% Similarity=0.584 Sum_probs=132.1
Q ss_pred CHHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcE
Q psy13287 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQS 79 (140)
Q Consensus 1 ~l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 79 (140)
+|.+|++.+|++.|++++|||+|+++....++++++|..+.++ .+...+.++|+++.+..++|+..|..+.+ ...+.
T Consensus 189 qI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~--~~~q~ 266 (397)
T KOG0327|consen 189 QIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR--RVTQA 266 (397)
T ss_pred HHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH--hhhcc
Confidence 4789999999999999999999999999999999999999998 66789999999999998889999999988 57889
Q ss_pred EEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 80 IIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 80 lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+|||||++.+..+..+|...+..+.++||++.+.+|..++..|+.|..++||+||++||||
T Consensus 267 ~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argi 327 (397)
T KOG0327|consen 267 VIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGI 327 (397)
T ss_pred eEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecccccccc
Confidence 9999999999999999988899999999999999999999999999999999999999997
No 11
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.94 E-value=8.2e-26 Score=169.38 Aligned_cols=139 Identities=31% Similarity=0.451 Sum_probs=126.6
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEE
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSI 80 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~l 80 (140)
++.++..++...|++++|||+++.+..+...++.++..+.+. .....+.+.+.+..++...|.+.+..++......++|
T Consensus 170 i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~l 249 (456)
T PRK10590 170 IRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVL 249 (456)
T ss_pred HHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEE
Confidence 567888899999999999999999999999999998887776 3445677888888888888888888888877778999
Q ss_pred EEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 81 IFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 81 IF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
|||+++..++.+++.|++.++.+..+||++++.+|..++++|++|++++|||||+++||+
T Consensus 250 VF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGi 309 (456)
T PRK10590 250 VFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGL 309 (456)
T ss_pred EEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999996
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=9.5e-26 Score=172.60 Aligned_cols=139 Identities=24% Similarity=0.381 Sum_probs=125.8
Q ss_pred HHHHHhhCCC--CCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCc
Q psy13287 2 LDHVISILPH--ERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQ 78 (140)
Q Consensus 2 l~~il~~~~~--~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~ 78 (140)
++.|++.++. +.|+++||||++..+..+...++.++..+.+. .......+.|.+..+...+|...+..++......+
T Consensus 180 i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k 259 (572)
T PRK04537 180 IRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRSEGAR 259 (572)
T ss_pred HHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcccCCc
Confidence 5678888886 68999999999999999999999888777665 33456778898888888889999999998877889
Q ss_pred EEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 79 SIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+||||||+..++.+++.|.+.++.+..+||++++.+|..++++|++|+++||||||+++||+
T Consensus 260 ~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGI 321 (572)
T PRK04537 260 TMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGL 321 (572)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 13
>PTZ00110 helicase; Provisional
Probab=99.94 E-value=1.7e-25 Score=170.48 Aligned_cols=140 Identities=22% Similarity=0.393 Sum_probs=124.6
Q ss_pred CHHHHHhhCCCCCeEEEEEecCchhHHHHHHHhcc-CCcEEEcCC--cccCCCeEEEEEEcCccchHHHHHHHHhhC--C
Q psy13287 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLK-DPYEINLME--ELTLKGVTQYYAFVQERQKVHCLNTLFSKL--Q 75 (140)
Q Consensus 1 ~l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~-~~~~i~~~~--~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~ 75 (140)
++.+|+..+++++|++++|||+|..+..+.+.++. ++..+.+.. .....++.+.+..++..+|...|.+++... .
T Consensus 297 ~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~ 376 (545)
T PTZ00110 297 QIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRD 376 (545)
T ss_pred HHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhccc
Confidence 36788889989999999999999999999998886 566676653 235577888888888888999999988776 4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
..++||||++++.|+.+++.|+..++.+..+||++++++|..++++|++|+++||||||+++||+
T Consensus 377 ~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 377 GDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGL 441 (545)
T ss_pred CCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCC
Confidence 67999999999999999999999999999999999999999999999999999999999999996
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=2.1e-25 Score=165.90 Aligned_cols=139 Identities=21% Similarity=0.326 Sum_probs=124.3
Q ss_pred HHHHHhhCCC--CCeEEEEEecCchhHHHHHHHhccCCcEEEcCC-cccCCCeEEEEEEcCccchHHHHHHHHhhCCCCc
Q psy13287 2 LDHVISILPH--ERQILLYSATFPLTVKNFMEKHLKDPYEINLME-ELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQ 78 (140)
Q Consensus 2 l~~il~~~~~--~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~ 78 (140)
++.|++.++. ..|.+++|||++..+.......+.+|..+.+.+ ......+.+.+.++...+|...+..++......+
T Consensus 178 i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~ 257 (423)
T PRK04837 178 IRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDR 257 (423)
T ss_pred HHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCe
Confidence 5667888874 567899999999999999999999998887763 3455677888887788889999999998877889
Q ss_pred EEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 79 SIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+||||+++..|+.+++.|+..|+++..+||++++++|..++++|++|++++|||||+++||+
T Consensus 258 ~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGi 319 (423)
T PRK04837 258 AIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGL 319 (423)
T ss_pred EEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 15
>KOG0338|consensus
Probab=99.93 E-value=1.1e-25 Score=165.03 Aligned_cols=140 Identities=21% Similarity=0.326 Sum_probs=129.2
Q ss_pred CHHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCC-cccCCCeEEEEEEcC---ccchHHHHHHHHhhCCC
Q psy13287 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLME-ELTLKGVTQYYAFVQ---ERQKVHCLNTLFSKLQI 76 (140)
Q Consensus 1 ~l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~---~~~k~~~l~~ll~~~~~ 76 (140)
++++|++.+|+++|++||||||+..+.+++.-.+..|..+.+++ ....+.+.|.|+.+. +.++...|..++.+.-.
T Consensus 347 emnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~ 426 (691)
T KOG0338|consen 347 EMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQ 426 (691)
T ss_pred HHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcc
Confidence 47899999999999999999999999999999999999999985 467889999988775 44688889999988888
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 77 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.++|||+.|++.|-++.=.|-=.|++++-+||.+++++|...+++|+++++++|||||++||||
T Consensus 427 ~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGL 490 (691)
T KOG0338|consen 427 DRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGL 490 (691)
T ss_pred cceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccC
Confidence 9999999999999999877777799999999999999999999999999999999999999997
No 16
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=4.9e-24 Score=160.56 Aligned_cols=139 Identities=24% Similarity=0.345 Sum_probs=124.1
Q ss_pred HHHHHhhCCC--CCeEEEEEecCchhHHHHHHHhccCCcEEEcCC-cccCCCeEEEEEEcCccchHHHHHHHHhhCCCCc
Q psy13287 2 LDHVISILPH--ERQILLYSATFPLTVKNFMEKHLKDPYEINLME-ELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQ 78 (140)
Q Consensus 2 l~~il~~~~~--~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~ 78 (140)
+++|++.++. +.|++++|||++.++.+..+.++.++..+.+.. ....+++.+.+..+...+|...+..++......+
T Consensus 258 l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~ 337 (475)
T PRK01297 258 VRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWER 337 (475)
T ss_pred HHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCe
Confidence 5677887764 579999999999999999999999988877763 3445667777777788889999999998877789
Q ss_pred EEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 79 SIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+||||++++.++.+++.|.+.++.+..+||++++++|.+++++|++|++++|||||+++||+
T Consensus 338 ~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GI 399 (475)
T PRK01297 338 VMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGI 399 (475)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999996
No 17
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.93 E-value=3.5e-24 Score=162.67 Aligned_cols=138 Identities=26% Similarity=0.326 Sum_probs=121.3
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhCC--CCc
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQ--INQ 78 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~--~~~ 78 (140)
+.+|+..++ +.|++++|||+|+.+..+...++.++..+.+. .......+.+.+.+++..+|...+.+++.... .++
T Consensus 291 i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~ 369 (518)
T PLN00206 291 VMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPP 369 (518)
T ss_pred HHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCC
Confidence 456777774 68999999999999999999999998888876 34556778899999988888888888887543 368
Q ss_pred EEEEeCchHHHHHHHHHHHh-cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 79 SIIFCNSTQRVELLAKKITE-LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+||||+++..++.+++.|+. .++++..+||++++.+|..++++|++|+++||||||+++||+
T Consensus 370 ~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGi 432 (518)
T PLN00206 370 AVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGV 432 (518)
T ss_pred EEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccC
Confidence 99999999999999999986 589999999999999999999999999999999999999997
No 18
>KOG0343|consensus
Probab=99.92 E-value=1e-24 Score=161.30 Aligned_cols=140 Identities=28% Similarity=0.404 Sum_probs=132.4
Q ss_pred CHHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC---CcccCCCeEEEEEEcCccchHHHHHHHHhhCCCC
Q psy13287 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM---EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQIN 77 (140)
Q Consensus 1 ~l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~ 77 (140)
+++.|+..+|..+|+++||||-+..+.++++-.+.+|..|.+. ....+.++.|+|+.++-++|+..|...+......
T Consensus 235 tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~ 314 (758)
T KOG0343|consen 235 TLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKK 314 (758)
T ss_pred HHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhcccc
Confidence 3788999999999999999999999999999999999998886 2468899999999999999999999999998889
Q ss_pred cEEEEeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 78 QSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++|||+.|.+++..+++.|++. |+++..+||+|++..|.+++++|-..+--||+|||++||||
T Consensus 315 K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGL 379 (758)
T KOG0343|consen 315 KSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGL 379 (758)
T ss_pred ceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccC
Confidence 9999999999999999999987 88999999999999999999999998899999999999997
No 19
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.92 E-value=7.2e-24 Score=158.10 Aligned_cols=139 Identities=27% Similarity=0.427 Sum_probs=121.8
Q ss_pred HHHHHhhCCCCCeEEEEEecCch-hHHHHHHHhccCCcEEEcCC-cccCCCeEEEEEEcC-ccchHHHHHHHHhhCCCCc
Q psy13287 2 LDHVISILPHERQILLYSATFPL-TVKNFMEKHLKDPYEINLME-ELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKLQINQ 78 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~-~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~ 78 (140)
+..|...++...|+++||||++. .+..+...++.++..+...+ ......+.+++..++ ...|...|..+++.....+
T Consensus 168 ~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~ 247 (434)
T PRK11192 168 IETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTR 247 (434)
T ss_pred HHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCe
Confidence 45677777778999999999985 47778888888888887763 345667888888776 4678899999988767889
Q ss_pred EEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 79 SIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+||||++++.++.+++.|++.++++..+||++++.+|..++++|++|+++||||||+++||+
T Consensus 248 ~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~Gi 309 (434)
T PRK11192 248 SIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGI 309 (434)
T ss_pred EEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999996
No 20
>PTZ00424 helicase 45; Provisional
Probab=99.92 E-value=2.1e-23 Score=154.11 Aligned_cols=139 Identities=33% Similarity=0.585 Sum_probs=122.5
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCc-cchHHHHHHHHhhCCCCcE
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQE-RQKVHCLNTLFSKLQINQS 79 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~ 79 (140)
+.++++.++++.|++++|||+|+.+......++.++..+.+. ......++.+.+..++. ..+...+..++......++
T Consensus 191 ~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (401)
T PTZ00424 191 IYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQA 270 (401)
T ss_pred HHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeE
Confidence 456788888899999999999999999998999888777665 34456777888877764 4577888888887777899
Q ss_pred EEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 80 IIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 80 lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||||+|++.++.+++.|++.++.+..+||++++.+|..++++|++|++++||||++++||+
T Consensus 271 ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~Gi 331 (401)
T PTZ00424 271 IIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGI 331 (401)
T ss_pred EEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 21
>KOG0342|consensus
Probab=99.92 E-value=2.8e-24 Score=156.77 Aligned_cols=140 Identities=27% Similarity=0.395 Sum_probs=128.5
Q ss_pred CHHHHHhhCCCCCeEEEEEecCchhHHHHHHHhcc-CCcEEEcCC---cccCCCeEEEEEEcCccchHHHHHHHHhhCCC
Q psy13287 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLK-DPYEINLME---ELTLKGVTQYYAFVQERQKVHCLNTLFSKLQI 76 (140)
Q Consensus 1 ~l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~-~~~~i~~~~---~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~ 76 (140)
+|+.|++.+|.++|+++||||.|+.|++++..-++ +|..+...+ ....+.+.|-|+.++.+.++..+..+|++...
T Consensus 250 di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~ 329 (543)
T KOG0342|consen 250 DVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIK 329 (543)
T ss_pred HHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999887 588887763 45778899999989988889999998877654
Q ss_pred -CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 77 -NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 77 -~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.++||||.|...+..+++.|+...++|..+||++++..|-.+..+|++.+..||||||++||||
T Consensus 330 ~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGl 394 (543)
T KOG0342|consen 330 RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGL 394 (543)
T ss_pred CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccC
Confidence 8999999999999999999999999999999999999999999999999999999999999997
No 22
>KOG0335|consensus
Probab=99.91 E-value=9.8e-24 Score=154.91 Aligned_cols=140 Identities=27% Similarity=0.378 Sum_probs=126.4
Q ss_pred CHHHHHhhCCC----CCeEEEEEecCchhHHHHHHHhccC-CcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhC
Q psy13287 1 MLDHVISILPH----ERQILLYSATFPLTVKNFMEKHLKD-PYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKL 74 (140)
Q Consensus 1 ~l~~il~~~~~----~~q~v~~SAT~~~~~~~~~~~~~~~-~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~ 74 (140)
+|++|+.+... +.|+++||||+|..++.+...++.+ ...+.+. -+..++++.|.+.+|.+.+|...|.+++...
T Consensus 247 ~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~ 326 (482)
T KOG0335|consen 247 QIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKD 326 (482)
T ss_pred cHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcc
Confidence 57788888753 7899999999999999988888886 5666666 5678999999999999999999999999755
Q ss_pred C----CC-----cEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 75 Q----IN-----QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 75 ~----~~-----~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
. .+ .++|||.|++.|..++..|...++++..+||+..+.+|...++.|++|++.+||||++++||+
T Consensus 327 ~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGl 401 (482)
T KOG0335|consen 327 DGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGL 401 (482)
T ss_pred cCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCC
Confidence 3 23 799999999999999999999999999999999999999999999999999999999999997
No 23
>KOG0345|consensus
Probab=99.91 E-value=9.4e-24 Score=153.51 Aligned_cols=140 Identities=24% Similarity=0.383 Sum_probs=131.1
Q ss_pred CHHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcc---cCCCeEEEEEEcCccchHHHHHHHHhhCCCC
Q psy13287 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEEL---TLKGVTQYYAFVQERQKVHCLNTLFSKLQIN 77 (140)
Q Consensus 1 ~l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~ 77 (140)
+++.|+..+|+++.+-+||||.+..+.++.+..++||..+.+.... .+..+..+|+.|+...|...+..+|.....+
T Consensus 177 ~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~k 256 (567)
T KOG0345|consen 177 SVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDK 256 (567)
T ss_pred HHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccc
Confidence 3688999999999999999999999999999999999999998433 7788999999999999999999999998899
Q ss_pred cEEEEeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 78 QSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++|||++|...++.+...|... +..+..+||.|++..|..++++|++..-.+|+|||++||||
T Consensus 257 K~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 257 KCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred cEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 9999999999999999999876 66899999999999999999999998889999999999997
No 24
>KOG0340|consensus
Probab=99.90 E-value=2.9e-23 Score=146.69 Aligned_cols=140 Identities=26% Similarity=0.390 Sum_probs=121.5
Q ss_pred CHHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccC--CcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhCC--
Q psy13287 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKD--PYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQ-- 75 (140)
Q Consensus 1 ~l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~--~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~-- 75 (140)
+++.|++.+|..+|+++||||+++.+.++..--... +...+.. +....+.+.+.|+.++...|-..+..+|.+..
T Consensus 173 ~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~ 252 (442)
T KOG0340|consen 173 ILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENK 252 (442)
T ss_pred HHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhc
Confidence 367788889989999999999998877765444443 3344443 55788899999999999999888888887773
Q ss_pred -CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 76 -INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 76 -~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++.++||+|+..+|+.++..|+..++++..+||.|++.+|...+.+|+.+.+++|||||++|||+
T Consensus 253 ~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 253 ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 46799999999999999999999999999999999999999999999999999999999999997
No 25
>KOG0336|consensus
Probab=99.89 E-value=7.1e-23 Score=147.44 Aligned_cols=140 Identities=21% Similarity=0.338 Sum_probs=126.5
Q ss_pred CHHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCC--cccCCCeEEEEEEcCccchHHHHHHHHhhC-CCC
Q psy13287 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLME--ELTLKGVTQYYAFVQERQKVHCLNTLFSKL-QIN 77 (140)
Q Consensus 1 ~l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~ 77 (140)
||++|+=.+.+++|+++.|||+|+.++.+...++++|..+.++. -.....+.|.++...+.+|.+.+..++... ++.
T Consensus 387 qIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~nd 466 (629)
T KOG0336|consen 387 QIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSND 466 (629)
T ss_pred HHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCc
Confidence 57788888889999999999999999999999999999988873 335567888886666788999998888877 568
Q ss_pred cEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 78 QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++||||..+-.|+.+...|.-.|+....+||+-++.+|+..++.|+.|+++|||+||+++|||
T Consensus 467 KvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGl 529 (629)
T KOG0336|consen 467 KVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGL 529 (629)
T ss_pred eEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCC
Confidence 999999999999999999988899999999999999999999999999999999999999997
No 26
>KOG0341|consensus
Probab=99.89 E-value=2.5e-23 Score=148.99 Aligned_cols=139 Identities=24% Similarity=0.326 Sum_probs=126.9
Q ss_pred CHHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCC-cccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcE
Q psy13287 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLME-ELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQS 79 (140)
Q Consensus 1 ~l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 79 (140)
||+.|+.+....+|+++||||+|..++.+++.-+-.|..+++++ +..+-++.|.+.++..+.|+--|.+-|++. ..++
T Consensus 346 dir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT-~PpV 424 (610)
T KOG0341|consen 346 DIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT-SPPV 424 (610)
T ss_pred hHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccC-CCce
Confidence 57889999999999999999999999999999999999999984 456667888888888888888777777664 5679
Q ss_pred EEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 80 IIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 80 lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||||..+.+++.+.++|--.|..+..+||+-++++|...++.|+.|+-+|||+||++|.|+
T Consensus 425 LIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGL 485 (610)
T KOG0341|consen 425 LIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGL 485 (610)
T ss_pred EEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccC
Confidence 9999999999999999998899999999999999999999999999999999999999996
No 27
>KOG4284|consensus
Probab=99.89 E-value=3.4e-23 Score=155.70 Aligned_cols=140 Identities=25% Similarity=0.438 Sum_probs=129.1
Q ss_pred CHHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCcc--------chHHHHHHHH
Q psy13287 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQER--------QKVHCLNTLF 71 (140)
Q Consensus 1 ~l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~--------~k~~~l~~ll 71 (140)
+|..|+..+|..+|++.+|||.|.++.+...++|++|..+... +....-+++|++..+... .|...|-.++
T Consensus 188 ~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf 267 (980)
T KOG4284|consen 188 DINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVF 267 (980)
T ss_pred HHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999887 556677888888876532 3788888899
Q ss_pred hhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 72 SKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 72 ~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+.++..|+||||+....|+-++.+|...|+.|.++.|.|++.+|..+++.+|+-.++|||+||+.+||+
T Consensus 268 ~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGI 336 (980)
T KOG4284|consen 268 KSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGI 336 (980)
T ss_pred hhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999996
No 28
>KOG0339|consensus
Probab=99.89 E-value=2.5e-22 Score=147.60 Aligned_cols=140 Identities=21% Similarity=0.298 Sum_probs=126.0
Q ss_pred CHHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcC-ccchHHHHHHHHhhC-CCC
Q psy13287 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKL-QIN 77 (140)
Q Consensus 1 ~l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~-~~~ 77 (140)
|++.|-+.+.+++|+++||||++..++.+++.++.+|..+... -...+..|.|.+..++ ++.|..+|..-|... ..+
T Consensus 390 qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~g 469 (731)
T KOG0339|consen 390 QVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEG 469 (731)
T ss_pred HHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCC
Confidence 5788999999999999999999999999999999999887666 4567788999888875 456788777755443 678
Q ss_pred cEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 78 QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++|+|+....++++++..|.-.+++|..+||++++.+|++++.+|+.+...|||+||+++||+
T Consensus 470 kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargl 532 (731)
T KOG0339|consen 470 KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGL 532 (731)
T ss_pred cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999996
No 29
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.88 E-value=8.7e-22 Score=154.46 Aligned_cols=134 Identities=13% Similarity=0.066 Sum_probs=101.0
Q ss_pred HHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCc-----------------cchHH
Q psy13287 3 DHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQE-----------------RQKVH 65 (140)
Q Consensus 3 ~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-----------------~~k~~ 65 (140)
.++.+.++.++|++++|||+++... ....+++.+..+...+........+ ..+.+. .++..
T Consensus 185 ~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~r~~~~~~~~~ 262 (742)
T TIGR03817 185 RRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAVTEDGSPRGARTV-ALWEPPLTELTGENGAPVRRSASAEAAD 262 (742)
T ss_pred HHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEECCCCCCcCceEE-EEecCCccccccccccccccchHHHHHH
Confidence 3445556678999999999998754 6777888775543223322232333 222221 13455
Q ss_pred HHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc--------CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccC
Q psy13287 66 CLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL--------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSS 137 (140)
Q Consensus 66 ~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~--------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~ 137 (140)
.+..+++. ..++||||||++.++.+++.|++. +.++..+||++++++|..++++|++|++++|||||+++
T Consensus 263 ~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~le 340 (742)
T TIGR03817 263 LLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALE 340 (742)
T ss_pred HHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHh
Confidence 66666654 579999999999999999998764 56899999999999999999999999999999999999
Q ss_pred CCC
Q psy13287 138 AMM 140 (140)
Q Consensus 138 rGl 140 (140)
||+
T Consensus 341 rGI 343 (742)
T TIGR03817 341 LGV 343 (742)
T ss_pred ccC
Confidence 997
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=1.1e-20 Score=142.32 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=101.9
Q ss_pred HHhhCCCCCeEEEEEecCchhHHHHHHHhcc--CCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHh-hCCCCcEEE
Q psy13287 5 VISILPHERQILLYSATFPLTVKNFMEKHLK--DPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFS-KLQINQSII 81 (140)
Q Consensus 5 il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~-~~~~~~~lI 81 (140)
+.+.+ ++.|++++|||+++.+.......++ ++..+... ...+++...+.. ........+..++. ..+..++||
T Consensus 156 l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s--~~r~nl~~~v~~-~~~~~~~~l~~~l~~~~~~~~~II 231 (470)
T TIGR00614 156 LKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS--FDRPNLYYEVRR-KTPKILEDLLRFIRKEFKGKSGII 231 (470)
T ss_pred HHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC--CCCCCcEEEEEe-CCccHHHHHHHHHHHhcCCCceEE
Confidence 33444 4788999999999998877776654 44444332 233444443332 22245556666665 334556799
Q ss_pred EeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 82 FCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 82 F~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||+|++.++.+++.|++.|+.+..+||+|++++|..++++|++|+++|||||++++||+
T Consensus 232 F~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GI 290 (470)
T TIGR00614 232 YCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGI 290 (470)
T ss_pred EECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccC
Confidence 99999999999999999999999999999999999999999999999999999999996
No 31
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.87 E-value=1.6e-20 Score=145.00 Aligned_cols=131 Identities=18% Similarity=0.172 Sum_probs=103.0
Q ss_pred HHhhCCCCCeEEEEEecCchhHHHHHHHhcc--CCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEE
Q psy13287 5 VISILPHERQILLYSATFPLTVKNFMEKHLK--DPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIF 82 (140)
Q Consensus 5 il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF 82 (140)
+.+.+ ++.|++++|||+++.+.......+. +|..... ....+++... .++...+...+..++......++|||
T Consensus 168 l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~--~~~r~nl~~~--v~~~~~~~~~l~~~l~~~~~~~~IIF 242 (607)
T PRK11057 168 LRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS--SFDRPNIRYT--LVEKFKPLDQLMRYVQEQRGKSGIIY 242 (607)
T ss_pred HHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC--CCCCCcceee--eeeccchHHHHHHHHHhcCCCCEEEE
Confidence 33343 4788999999999988776655544 4433222 2233444332 23444556677777777677899999
Q ss_pred eCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 83 CNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 83 ~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
|+|++.|+.+++.|++.|+++..+||+|++++|..++++|++|+++|||||++++||+
T Consensus 243 c~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GI 300 (607)
T PRK11057 243 CNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGI 300 (607)
T ss_pred ECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccC
Confidence 9999999999999999999999999999999999999999999999999999999996
No 32
>KOG0334|consensus
Probab=99.86 E-value=1.1e-21 Score=153.29 Aligned_cols=139 Identities=27% Similarity=0.458 Sum_probs=128.6
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcC-ccchHHHHHHHHhhC-CCCc
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKL-QINQ 78 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~-~~~~ 78 (140)
+-.|++.+++.+|+++||||+|..++.+....++.|..+.++ .......+.+.+..+. +++|+..|.++|... ...+
T Consensus 536 ~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~ 615 (997)
T KOG0334|consen 536 ITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGK 615 (997)
T ss_pred cchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCC
Confidence 345899999999999999999999999999999988888777 5678899999999998 889999999999655 5789
Q ss_pred EEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 79 SIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+||||.+...|..+.+.|.+.|+.|..+||+.++.+|..++++|++|.+.+||||++++||+
T Consensus 616 tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGL 677 (997)
T KOG0334|consen 616 TIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGL 677 (997)
T ss_pred EEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 33
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.86 E-value=2.5e-20 Score=143.70 Aligned_cols=132 Identities=18% Similarity=0.223 Sum_probs=106.1
Q ss_pred HHHhhCCCCCeEEEEEecCchhHHHHHHHhcc--CCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEE
Q psy13287 4 HVISILPHERQILLYSATFPLTVKNFMEKHLK--DPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSII 81 (140)
Q Consensus 4 ~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lI 81 (140)
.+...++ +.+++++|||+++.+...+...++ ++..+. .....+++...+ .+..++...+.+++......++||
T Consensus 155 ~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~nl~~~v--~~~~~~~~~l~~~l~~~~~~~~II 229 (591)
T TIGR01389 155 SLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI--TSFDRPNLRFSV--VKKNNKQKFLLDYLKKHRGQSGII 229 (591)
T ss_pred HHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe--cCCCCCCcEEEE--EeCCCHHHHHHHHHHhcCCCCEEE
Confidence 3444454 455999999999999888877775 333322 223344554433 344567778888887766788999
Q ss_pred EeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 82 FCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 82 F~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||+|++.++.+++.|+..|+++..|||+|++++|..++++|++|++++||||+++++|+
T Consensus 230 f~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GI 288 (591)
T TIGR01389 230 YASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGI 288 (591)
T ss_pred EECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccC
Confidence 99999999999999999999999999999999999999999999999999999999996
No 34
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.86 E-value=2.5e-20 Score=148.55 Aligned_cols=134 Identities=14% Similarity=0.123 Sum_probs=103.0
Q ss_pred HhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhC-CCCcEEEEeC
Q psy13287 6 ISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKL-QINQSIIFCN 84 (140)
Q Consensus 6 l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~ 84 (140)
+....++.|++++|||+++.+.+.+...++....+........+++...+.. ........+.+++... ...++||||+
T Consensus 610 Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~-k~kk~le~L~~~I~~~~~~esgIIYC~ 688 (1195)
T PLN03137 610 LKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVP-KTKKCLEDIDKFIKENHFDECGIIYCL 688 (1195)
T ss_pred HHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEec-cchhHHHHHHHHHHhcccCCCceeEeC
Confidence 3334457899999999999999877777653222222223344555444332 2222245566666543 3567999999
Q ss_pred chHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 85 STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 85 t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
|++.++.+++.|++.|+.+..|||+|++++|..++++|++|+++|||||++++|||
T Consensus 689 SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGI 744 (1195)
T PLN03137 689 SRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGI 744 (1195)
T ss_pred chhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCC
Confidence 99999999999999999999999999999999999999999999999999999997
No 35
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.85 E-value=4.4e-20 Score=149.56 Aligned_cols=134 Identities=18% Similarity=0.165 Sum_probs=106.9
Q ss_pred HHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCcc-chHHHHHHHHhhCCCCcEEE
Q psy13287 3 DHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQER-QKVHCLNTLFSKLQINQSII 81 (140)
Q Consensus 3 ~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~lI 81 (140)
.+.++.++.+.|++++|||+++++..+....+.++..+...+.. ...+.+++...... .+...+.++. ..++++|
T Consensus 739 ~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~-r~~v~~~~~~~~~~~~k~~il~el~---r~gqv~v 814 (1147)
T PRK10689 739 KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR-RLAVKTFVREYDSLVVREAILREIL---RGGQVYY 814 (1147)
T ss_pred HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC-CCCceEEEEecCcHHHHHHHHHHHh---cCCeEEE
Confidence 34567788899999999999999888888888888777664332 23455555443321 2233333332 3579999
Q ss_pred EeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 82 FCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 82 F~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
|||+++.++++++.|++. +.++..+||+|++++|..++++|++|+++||||||+++||+
T Consensus 815 f~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGI 875 (1147)
T PRK10689 815 LYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 (1147)
T ss_pred EECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhccc
Confidence 999999999999999987 78999999999999999999999999999999999999996
No 36
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.85 E-value=4e-20 Score=144.72 Aligned_cols=137 Identities=15% Similarity=0.266 Sum_probs=104.1
Q ss_pred CHHHHHhhC--CCC---CeEEEEEecCchhHHHHHHHhccCCcEEEcCC-cccCCCeEEEEEEcCccchHHHHHHHH---
Q psy13287 1 MLDHVISIL--PHE---RQILLYSATFPLTVKNFMEKHLKDPYEINLME-ELTLKGVTQYYAFVQERQKVHCLNTLF--- 71 (140)
Q Consensus 1 ~l~~il~~~--~~~---~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~k~~~l~~ll--- 71 (140)
+++.|++.+ ++. .|+++||||+|..+......++.++..+.+.. ....+.+.++ +.++...|...+...+
T Consensus 189 ~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~l 267 (844)
T TIGR02621 189 LLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL-VPPSDEKFLSTMVKELNLL 267 (844)
T ss_pred HHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEE-EecChHHHHHHHHHHHHHH
Confidence 367788864 332 69999999999988888888887777666643 3344566664 3444444543333222
Q ss_pred hhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHH-----HHHHHhhc----CC-------ccEEEEecc
Q psy13287 72 SKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRN-----RVFHDFRS----GL-------CRNLVCSGD 135 (140)
Q Consensus 72 ~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~-----~~~~~f~~----g~-------~~vlv~T~~ 135 (140)
.....+++||||||++.|+.+++.|++.++ ..+||+|++.+|. .++++|++ |+ .++|||||+
T Consensus 268 l~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdV 345 (844)
T TIGR02621 268 MKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSA 345 (844)
T ss_pred HhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccch
Confidence 122467899999999999999999998887 8999999999999 88999987 54 689999999
Q ss_pred cCCCC
Q psy13287 136 SSAMM 140 (140)
Q Consensus 136 ~~rGl 140 (140)
++||+
T Consensus 346 aerGL 350 (844)
T TIGR02621 346 GEVGV 350 (844)
T ss_pred hhhcc
Confidence 99996
No 37
>KOG0337|consensus
Probab=99.85 E-value=1.1e-20 Score=136.26 Aligned_cols=140 Identities=24% Similarity=0.301 Sum_probs=130.3
Q ss_pred CHHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhC-CCCc
Q psy13287 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKL-QINQ 78 (140)
Q Consensus 1 ~l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~ 78 (140)
|+.+++..+|.+.|+++||||+|..+-+..+..+.+|..+-++ +....+.+.+.+..+...+|...|..++... .+++
T Consensus 184 ql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~ 263 (529)
T KOG0337|consen 184 QLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQ 263 (529)
T ss_pred HHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccccccc
Confidence 4678999999999999999999999999999999999988877 5567888999999999999999999999766 5679
Q ss_pred EEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 79 SIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++|||.|...+|.+...|+..|+.+..++|.+++..|..-+.+|+.++..+||.||+++||+
T Consensus 264 t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~ 325 (529)
T KOG0337|consen 264 TIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGL 325 (529)
T ss_pred eeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999996
No 38
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.84 E-value=5.1e-20 Score=134.33 Aligned_cols=136 Identities=18% Similarity=0.240 Sum_probs=96.4
Q ss_pred HHhhCC-CCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcC--ccchHHHHHHHHhhC-CCCcEE
Q psy13287 5 VISILP-HERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQ--ERQKVHCLNTLFSKL-QINQSI 80 (140)
Q Consensus 5 il~~~~-~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~--~~~k~~~l~~ll~~~-~~~~~l 80 (140)
+++.++ .+.|++++|||+|+.+.+........+...............+.+..+. ...+...+.+++... +++++|
T Consensus 147 ~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 226 (358)
T TIGR01587 147 VLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIA 226 (358)
T ss_pred HHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEE
Confidence 344443 4789999999999777666555433321111111111111233333322 235667777777654 468999
Q ss_pred EEeCchHHHHHHHHHHHhcCc--eEEEEecCCCHHHHHH----HHHHhhcCCccEEEEecccCCCC
Q psy13287 81 IFCNSTQRVELLAKKITELGY--CCYYIHARMAQAHRNR----VFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 81 IF~~t~~~~~~~~~~L~~~~~--~v~~~h~~~~~~~R~~----~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
|||||++.|+.+++.|++.+. .+..+||++++.+|.. ++++|++|+.++|||||+++||+
T Consensus 227 Vf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~Gi 292 (358)
T TIGR01587 227 IIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASL 292 (358)
T ss_pred EEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhcee
Confidence 999999999999999988765 5999999999999976 48999999999999999999996
No 39
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.84 E-value=3.3e-20 Score=140.31 Aligned_cols=137 Identities=18% Similarity=0.192 Sum_probs=106.8
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcC-ccchHHHHHHHHhhCCCCcEE
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKLQINQSI 80 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~l 80 (140)
+..+.+.++ +.+++++|||.++.+...+...++-..-........++|+...+.... ..++...+.+ +.....+.+|
T Consensus 157 lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GI 234 (590)
T COG0514 157 LGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGI 234 (590)
T ss_pred HHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeE
Confidence 455666776 889999999999999998888876322222223345566666555443 3334443333 1133567799
Q ss_pred EEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 81 IFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 81 IF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
|||.|++.+|.++++|++.|+++..|||+|+.++|..+.++|..++++|+|||.+++||+
T Consensus 235 IYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGI 294 (590)
T COG0514 235 IYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGI 294 (590)
T ss_pred EEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCcc
Confidence 999999999999999999999999999999999999999999999999999999999996
No 40
>KOG0346|consensus
Probab=99.84 E-value=2.2e-20 Score=135.38 Aligned_cols=137 Identities=26% Similarity=0.352 Sum_probs=125.5
Q ss_pred CHHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcc--cCCCeEEEEEEcCccchHHHHHHHHh-hCCCC
Q psy13287 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEEL--TLKGVTQYYAFVQERQKVHCLNTLFS-KLQIN 77 (140)
Q Consensus 1 ~l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ll~-~~~~~ 77 (140)
++++|...+|+.+|.+++|||++.++..+-+.++++|..+.+.++. .+..+.|+++.|++.+|+..+..+++ ++-.+
T Consensus 190 dlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~g 269 (569)
T KOG0346|consen 190 DLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRG 269 (569)
T ss_pred HHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcC
Confidence 4788999999999999999999999999999999999999887543 45899999999999999988888876 44679
Q ss_pred cEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccC
Q psy13287 78 QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSS 137 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~ 137 (140)
+.|||+||.+.|.++.-.|.+-|++-..++|.++...|..+++.|..|-.+++||||.-+
T Consensus 270 KsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~ 329 (569)
T KOG0346|consen 270 KSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSA 329 (569)
T ss_pred ceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCcc
Confidence 999999999999999999999999999999999999999999999999999999999543
No 41
>KOG0344|consensus
Probab=99.83 E-value=2.6e-20 Score=138.49 Aligned_cols=140 Identities=21% Similarity=0.255 Sum_probs=125.0
Q ss_pred CHHHHHhhCC-CCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcC-ccchHHHHHHHHhhCCCC
Q psy13287 1 MLDHVISILP-HERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKLQIN 77 (140)
Q Consensus 1 ~l~~il~~~~-~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~ 77 (140)
|+.+|++.+. ++...-+||||+|.++++.++....++..+.++ .+.....+.|..++|. +..|.-.+.+++...-+.
T Consensus 309 Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~P 388 (593)
T KOG0344|consen 309 QLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKP 388 (593)
T ss_pred HHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCC
Confidence 4567777775 356678899999999999999999999888887 4566788999999985 567999999999998888
Q ss_pred cEEEEeCchHHHHHHHHHH-HhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 78 QSIIFCNSTQRVELLAKKI-TELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L-~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++|||+.+.+.|.+++..| .-.++.+.++||+.++.+|.+++++||.|++++|||||+++|||
T Consensus 389 P~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGi 452 (593)
T KOG0344|consen 389 PVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGI 452 (593)
T ss_pred CeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccc
Confidence 9999999999999999999 55589999999999999999999999999999999999999996
No 42
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.83 E-value=3.4e-19 Score=141.98 Aligned_cols=135 Identities=18% Similarity=0.130 Sum_probs=103.3
Q ss_pred HHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEE
Q psy13287 3 DHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIF 82 (140)
Q Consensus 3 ~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF 82 (140)
++.++.++.+.|++++|||+++....+....+.++..+...+.. ...+.+++.......-...+...+. ..++++||
T Consensus 590 ~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~-R~~V~t~v~~~~~~~i~~~i~~el~--~g~qv~if 666 (926)
T TIGR00580 590 KEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED-RLPVRTFVMEYDPELVREAIRRELL--RGGQVFYV 666 (926)
T ss_pred HHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC-ccceEEEEEecCHHHHHHHHHHHHH--cCCeEEEE
Confidence 45667778889999999999888777766666676666554332 2345555543322111122222222 46899999
Q ss_pred eCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 83 CNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 83 ~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||+++.++.+++.|++. ++++..+||+|++.+|..++++|++|+++|||||+++++|+
T Consensus 667 ~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GI 726 (926)
T TIGR00580 667 HNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGI 726 (926)
T ss_pred ECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccc
Confidence 99999999999999985 78999999999999999999999999999999999999996
No 43
>PRK09401 reverse gyrase; Reviewed
Probab=99.82 E-value=2.4e-19 Score=145.59 Aligned_cols=118 Identities=21% Similarity=0.252 Sum_probs=96.7
Q ss_pred CCeEEEEEecCchh-HHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHH-
Q psy13287 12 ERQILLYSATFPLT-VKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQR- 88 (140)
Q Consensus 12 ~~q~v~~SAT~~~~-~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~- 88 (140)
+.|+++||||+++. +.. .++.++..+.++ ......++.|.++.++ +|...+.++++... .++||||+++..
T Consensus 268 ~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~ 341 (1176)
T PRK09401 268 KGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDKGK 341 (1176)
T ss_pred CceEEEEeCCCCccchHH---HHhhccceEEecCcccccCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEecccCh
Confidence 68999999999975 332 344565556665 3446678999888766 67888888887764 579999999877
Q ss_pred --HHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE----ecccCCCC
Q psy13287 89 --VELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC----SGDSSAMM 140 (140)
Q Consensus 89 --~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~----T~~~~rGl 140 (140)
++++++.|+..|+++..+||++ . ..+++|++|++++||| ||+++|||
T Consensus 342 ~~ae~l~~~L~~~gi~v~~~hg~l---~--~~l~~F~~G~~~VLVatas~tdv~aRGI 394 (1176)
T PRK09401 342 EYAEELAEYLEDLGINAELAISGF---E--RKFEKFEEGEVDVLVGVASYYGVLVRGI 394 (1176)
T ss_pred HHHHHHHHHHHHCCCcEEEEeCcH---H--HHHHHHHCCCCCEEEEecCCCCceeecC
Confidence 9999999999999999999999 2 2359999999999999 69999997
No 44
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.82 E-value=7.7e-19 Score=138.62 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=103.8
Q ss_pred HHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchH-----HHHHHHHhhCCCC
Q psy13287 3 DHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKV-----HCLNTLFSKLQIN 77 (140)
Q Consensus 3 ~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~-----~~l~~ll~~~~~~ 77 (140)
.++.+.++++.|+++||||++... ...+++++..+.+.... -.+.++|......++. ..+..+++. ..+
T Consensus 137 ~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr~--~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g 210 (819)
T TIGR01970 137 LDVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESEGRS--FPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETG 210 (819)
T ss_pred HHHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCcc--eeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCC
Confidence 345566778899999999999653 45677776666654322 2367777666544442 234444443 468
Q ss_pred cEEEEeCchHHHHHHHHHHHh---cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 78 QSIIFCNSTQRVELLAKKITE---LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L~~---~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++||||++.++++.+++.|++ .++.+..+||++++++|..+++.|++|+.+|+||||++++|+
T Consensus 211 ~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgI 276 (819)
T TIGR01970 211 SILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSL 276 (819)
T ss_pred cEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcc
Confidence 899999999999999999987 378999999999999999999999999999999999999996
No 45
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.81 E-value=7.7e-19 Score=138.72 Aligned_cols=132 Identities=12% Similarity=0.138 Sum_probs=104.6
Q ss_pred HHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHH-----HHHHHHhhCCCC
Q psy13287 3 DHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVH-----CLNTLFSKLQIN 77 (140)
Q Consensus 3 ~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~-----~l~~ll~~~~~~ 77 (140)
.++++.++++.|+++||||++.. ....++.++..+.+... .-.+.++|..++..++.. .+..++.. ..+
T Consensus 140 ~~i~~~lr~~lqlilmSATl~~~---~l~~~~~~~~~I~~~gr--~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g 213 (812)
T PRK11664 140 LDVQQGLRDDLKLLIMSATLDND---RLQQLLPDAPVIVSEGR--SFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESG 213 (812)
T ss_pred HHHHHhCCccceEEEEecCCCHH---HHHHhcCCCCEEEecCc--cccceEEeccCchhhhHHHHHHHHHHHHHHh-CCC
Confidence 35666778889999999999865 34567777666655432 223777777666555543 34444443 468
Q ss_pred cEEEEeCchHHHHHHHHHHHh---cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 78 QSIIFCNSTQRVELLAKKITE---LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L~~---~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++||||++.++++.+++.|++ .++.+..+||++++++|..+++.|++|+.+|+||||++++|+
T Consensus 214 ~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsL 279 (812)
T PRK11664 214 SLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSL 279 (812)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcc
Confidence 899999999999999999987 478899999999999999999999999999999999999996
No 46
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.80 E-value=1.5e-18 Score=134.51 Aligned_cols=132 Identities=16% Similarity=0.188 Sum_probs=98.2
Q ss_pred HHhhCC-CCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCc----------cchHHHHHHHHhh
Q psy13287 5 VISILP-HERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQE----------RQKVHCLNTLFSK 73 (140)
Q Consensus 5 il~~~~-~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~----------~~k~~~l~~ll~~ 73 (140)
+++.+. ..+|+++||||+|.++..+ ..+++++..+.+.. .....+.++++.... .++...+..+...
T Consensus 313 llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g-rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~ 390 (675)
T PHA02653 313 VARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG-GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKY 390 (675)
T ss_pred HHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC-CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHh
Confidence 344333 3469999999999887766 67889988888753 334567777764321 1222223322222
Q ss_pred C--CCCcEEEEeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHh-hcCCccEEEEecccCCCC
Q psy13287 74 L--QINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDF-RSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 74 ~--~~~~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f-~~g~~~vlv~T~~~~rGl 140 (140)
. ..+++||||+++++++.+++.|++. ++.+..+||++++. ++.+++| ++|+.+||||||+++||+
T Consensus 391 ~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGI 460 (675)
T PHA02653 391 TPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSV 460 (675)
T ss_pred hcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccc
Confidence 1 3568999999999999999999887 78999999999975 5677887 689999999999999996
No 47
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.78 E-value=8.1e-18 Score=138.17 Aligned_cols=136 Identities=17% Similarity=0.191 Sum_probs=93.1
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhcc--CCcEEEcCCcccCCCeEEEEEEcCccch----------------
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLK--DPYEINLMEELTLKGVTQYYAFVQERQK---------------- 63 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~i~~~~~~~~~~~k---------------- 63 (140)
+++|...++.+.|+|++|||+++. .++. .++. .+..+...+......+... +.+.+..+
T Consensus 149 LeRL~~l~~~~~QrIgLSATI~n~-eevA-~~L~g~~pv~Iv~~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r 225 (1490)
T PRK09751 149 LERLDALLHTSAQRIGLSATVRSA-SDVA-AFLGGDRPVTVVNPPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGR 225 (1490)
T ss_pred HHHHHHhCCCCCeEEEEEeeCCCH-HHHH-HHhcCCCCEEEECCCCCcccceEEE-EecCchhhccccccccccccchhh
Confidence 455666667789999999999974 5555 4553 3444432222233333322 22221110
Q ss_pred -----HHHHHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhcC---------------------------------ceEE
Q psy13287 64 -----VHCLNTLFSKL-QINQSIIFCNSTQRVELLAKKITELG---------------------------------YCCY 104 (140)
Q Consensus 64 -----~~~l~~ll~~~-~~~~~lIF~~t~~~~~~~~~~L~~~~---------------------------------~~v~ 104 (140)
......++... ...++||||||++.||.++..|++.. ..+.
T Consensus 226 ~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~ 305 (1490)
T PRK09751 226 EGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIAR 305 (1490)
T ss_pred hhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeee
Confidence 01112333322 45789999999999999999997641 1267
Q ss_pred EEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 105 YIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 105 ~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++||++++++|..+++.|++|++++||||+.+++||
T Consensus 306 ~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGI 341 (1490)
T PRK09751 306 SHHGSVSKEQRAITEQALKSGELRCVVATSSLELGI 341 (1490)
T ss_pred eccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccC
Confidence 899999999999999999999999999999999997
No 48
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.77 E-value=2.6e-17 Score=120.15 Aligned_cols=124 Identities=16% Similarity=0.032 Sum_probs=89.3
Q ss_pred CCCCeEEEEEecCchhHHHHHHHh--ccCCcEEEcCC-----c--------------ccCCCeEEEEEEcCccchHHHHH
Q psy13287 10 PHERQILLYSATFPLTVKNFMEKH--LKDPYEINLME-----E--------------LTLKGVTQYYAFVQERQKVHCLN 68 (140)
Q Consensus 10 ~~~~q~v~~SAT~~~~~~~~~~~~--~~~~~~i~~~~-----~--------------~~~~~i~~~~~~~~~~~k~~~l~ 68 (140)
....+++++|||+|+.+....... ++.+....-+. + ...+.+.+.+.. ....|.+.+.
T Consensus 179 ~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~ 257 (357)
T TIGR03158 179 ECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELS 257 (357)
T ss_pred hcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHH
Confidence 335799999999999888777765 45543222222 0 112467776665 4444544443
Q ss_pred HHHh-------hCCCCcEEEEeCchHHHHHHHHHHHhcC--ceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCC
Q psy13287 69 TLFS-------KLQINQSIIFCNSTQRVELLAKKITELG--YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAM 139 (140)
Q Consensus 69 ~ll~-------~~~~~~~lIF~~t~~~~~~~~~~L~~~~--~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rG 139 (140)
.+++ ..+++++||||||++.++++++.|++.+ +.+..+||.+++.+|... ++.++|||||+++||
T Consensus 258 ~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rG 331 (357)
T TIGR03158 258 ELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVG 331 (357)
T ss_pred HHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcc
Confidence 3332 2246789999999999999999999864 578999999999988654 478999999999999
Q ss_pred C
Q psy13287 140 M 140 (140)
Q Consensus 140 l 140 (140)
+
T Consensus 332 i 332 (357)
T TIGR03158 332 V 332 (357)
T ss_pred c
Confidence 7
No 49
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.77 E-value=1.3e-17 Score=135.71 Aligned_cols=126 Identities=18% Similarity=0.269 Sum_probs=97.7
Q ss_pred HHhhCCCCCe--EEEEEec-CchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEE
Q psy13287 5 VISILPHERQ--ILLYSAT-FPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSI 80 (140)
Q Consensus 5 il~~~~~~~q--~v~~SAT-~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~l 80 (140)
+++.++++.| ++++||| .|..+. ..+++++..+.++ ......++.|.++.++. +...|.++++.. .+++|
T Consensus 257 ~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~I 330 (1171)
T TIGR01054 257 LLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL-GTGGI 330 (1171)
T ss_pred HHHhhhhccCcEEEEEeCCCCccccH---HHHcccccceEecCccccccceEEEEEeccc--HHHHHHHHHHHc-CCCEE
Confidence 3445555655 5678999 554433 2356666666665 34466788888875543 355677888776 46799
Q ss_pred EEeCch---HHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEe----cccCCCC
Q psy13287 81 IFCNST---QRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS----GDSSAMM 140 (140)
Q Consensus 81 IF~~t~---~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T----~~~~rGl 140 (140)
|||+++ +.|+++++.|++.|+++..+||++++ .++++|++|++++|||| |+++|||
T Consensus 331 VFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGI 393 (1171)
T TIGR01054 331 VYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGL 393 (1171)
T ss_pred EEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccC
Confidence 999999 99999999999999999999999973 78999999999999995 9999997
No 50
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.76 E-value=2.5e-17 Score=131.61 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=61.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc------CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+++||||||++.|+.++..|++. +..+.++||++++++|..++++|++|++++||||+.+++|+
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GI 354 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGI 354 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcC
Confidence 578999999999999999999873 46799999999999999999999999999999999999996
No 51
>PRK14701 reverse gyrase; Provisional
Probab=99.76 E-value=1.4e-17 Score=138.27 Aligned_cols=124 Identities=18% Similarity=0.195 Sum_probs=99.5
Q ss_pred hCCCCCe-EEEEEecCchhHHHHHHHhccCCcEEEcCC-cccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCc
Q psy13287 8 ILPHERQ-ILLYSATFPLTVKNFMEKHLKDPYEINLME-ELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNS 85 (140)
Q Consensus 8 ~~~~~~q-~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t 85 (140)
.+++.+| .+++|||+++. .....+++++..+.++. .....++.|.++.++...+ ..+..+++.. ..++||||+|
T Consensus 264 ~~~~~~~~ll~~SAT~~~r--~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t 339 (1638)
T PRK14701 264 KIGNKIGCLIVASATGKAK--GDRVKLYRELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPI 339 (1638)
T ss_pred hcCCCccEEEEEecCCCch--hHHHHHhhcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEec
Confidence 3455566 57799999975 22234567777777763 4466789999887766655 5677888776 4689999999
Q ss_pred hHH---HHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEe----cccCCCC
Q psy13287 86 TQR---VELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS----GDSSAMM 140 (140)
Q Consensus 86 ~~~---~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T----~~~~rGl 140 (140)
++. |+++++.|++.|+++..+||+ |...+++|++|+++||||| |+++|||
T Consensus 340 ~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGI 396 (1638)
T PRK14701 340 DEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGL 396 (1638)
T ss_pred cccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecC
Confidence 876 589999999999999999995 8899999999999999999 5899997
No 52
>KOG0347|consensus
Probab=99.76 E-value=4.1e-19 Score=131.82 Aligned_cols=138 Identities=23% Similarity=0.342 Sum_probs=102.5
Q ss_pred HHHHHhhCC-----CCCeEEEEEecCchh---------------------HHHHHHH--hccCCcEEEcCCc-ccCCCeE
Q psy13287 2 LDHVISILP-----HERQILLYSATFPLT---------------------VKNFMEK--HLKDPYEINLMEE-LTLKGVT 52 (140)
Q Consensus 2 l~~il~~~~-----~~~q~v~~SAT~~~~---------------------~~~~~~~--~~~~~~~i~~~~~-~~~~~i~ 52 (140)
+..|++.+. ..+|++.||||++-. ++.+++. +.+.|.+|.+.+. .....+.
T Consensus 361 ls~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~ 440 (731)
T KOG0347|consen 361 LSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLT 440 (731)
T ss_pred HHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHH
Confidence 455666665 358999999999722 1112211 2235666666532 3444455
Q ss_pred EEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 53 QYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 53 ~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
...+.|+..+|--.|..+|-.+ |+++|||||+.+.+.+++-.|+..++....+|+.|.+.+|...+++|++....||||
T Consensus 441 Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLia 519 (731)
T KOG0347|consen 441 ESLIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIA 519 (731)
T ss_pred HHhhcCCccccceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEe
Confidence 5555565555544344444443 889999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q psy13287 133 SGDSSAMM 140 (140)
Q Consensus 133 T~~~~rGl 140 (140)
||++||||
T Consensus 520 TDVAARGL 527 (731)
T KOG0347|consen 520 TDVAARGL 527 (731)
T ss_pred ehhhhccC
Confidence 99999997
No 53
>PRK00254 ski2-like helicase; Provisional
Probab=99.74 E-value=4e-17 Score=128.44 Aligned_cols=135 Identities=20% Similarity=0.232 Sum_probs=90.4
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCe-EEEEEEcCccc--h-----HHHHHHHHh
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGV-TQYYAFVQERQ--K-----VHCLNTLFS 72 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i-~~~~~~~~~~~--k-----~~~l~~ll~ 72 (140)
++.++..++.+.|++++|||+++. .++.. +++........ +......+ .+.+...+... + ...+.+.+.
T Consensus 159 le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 236 (720)
T PRK00254 159 LEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK 236 (720)
T ss_pred HHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH
Confidence 456778888889999999999863 54543 55543211111 11111111 11112222111 1 123334443
Q ss_pred hCCCCcEEEEeCchHHHHHHHHHHHhc---------------------------------CceEEEEecCCCHHHHHHHH
Q psy13287 73 KLQINQSIIFCNSTQRVELLAKKITEL---------------------------------GYCCYYIHARMAQAHRNRVF 119 (140)
Q Consensus 73 ~~~~~~~lIF~~t~~~~~~~~~~L~~~---------------------------------~~~v~~~h~~~~~~~R~~~~ 119 (140)
..+++||||+|++.|+.++..|.+. ...|+++||++++++|..++
T Consensus 237 --~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve 314 (720)
T PRK00254 237 --KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIE 314 (720)
T ss_pred --hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHH
Confidence 3678999999999999888766321 23599999999999999999
Q ss_pred HHhhcCCccEEEEecccCCCC
Q psy13287 120 HDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 120 ~~f~~g~~~vlv~T~~~~rGl 140 (140)
+.|++|.++|||||+.+++|+
T Consensus 315 ~~F~~G~i~VLvaT~tLa~Gv 335 (720)
T PRK00254 315 DAFREGLIKVITATPTLSAGI 335 (720)
T ss_pred HHHHCCCCeEEEeCcHHhhhc
Confidence 999999999999999999996
No 54
>KOG0348|consensus
Probab=99.71 E-value=2.6e-17 Score=122.06 Aligned_cols=129 Identities=25% Similarity=0.350 Sum_probs=107.3
Q ss_pred CCeEEEEEecCchhHHHHHHHhccCCcEEEcCC--------------------------cccCCCeEEEEEEcCccchHH
Q psy13287 12 ERQILLYSATFPLTVKNFMEKHLKDPYEINLME--------------------------ELTLKGVTQYYAFVQERQKVH 65 (140)
Q Consensus 12 ~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~--------------------------~~~~~~i~~~~~~~~~~~k~~ 65 (140)
..|.+++|||++..|..+....+++|..|..+. -..++++.|.|..|+.--++-
T Consensus 331 q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV 410 (708)
T KOG0348|consen 331 QLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLV 410 (708)
T ss_pred HHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHH
Confidence 368899999999999999999999999888321 013557778888888877776
Q ss_pred HHHHHHhhC----CCCcEEEEeCchHHHHHHHHHHHhc----------------------CceEEEEecCCCHHHHHHHH
Q psy13287 66 CLNTLFSKL----QINQSIIFCNSTQRVELLAKKITEL----------------------GYCCYYIHARMAQAHRNRVF 119 (140)
Q Consensus 66 ~l~~ll~~~----~~~~~lIF~~t~~~~~~~~~~L~~~----------------------~~~v~~~h~~~~~~~R~~~~ 119 (140)
.|..+|.+. ...++|||+.+.+.++.-+..|+.. +.++.-+||+|++++|..++
T Consensus 411 ~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f 490 (708)
T KOG0348|consen 411 ALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVF 490 (708)
T ss_pred HHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHH
Confidence 666666443 4568999999999999998888641 44689999999999999999
Q ss_pred HHhhcCCccEEEEecccCCCC
Q psy13287 120 HDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 120 ~~f~~g~~~vlv~T~~~~rGl 140 (140)
+.|+..+-.||.|||+++|||
T Consensus 491 ~~Fs~~~~~VLLcTDVAaRGL 511 (708)
T KOG0348|consen 491 QEFSHSRRAVLLCTDVAARGL 511 (708)
T ss_pred HhhccccceEEEehhhhhccC
Confidence 999998888999999999997
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.71 E-value=4.9e-16 Score=121.58 Aligned_cols=132 Identities=16% Similarity=0.144 Sum_probs=88.6
Q ss_pred HhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhC-CCCcEEEEeC
Q psy13287 6 ISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKL-QINQSIIFCN 84 (140)
Q Consensus 6 l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~ 84 (140)
+...+.+++++++|||+.+....+......+...+...+. ....+...+.. ...+...+..+.+.. ...+++|||+
T Consensus 403 l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~-~r~~i~~~~~~--~~~~~~~~~~i~~~~~~g~q~~v~~~ 479 (681)
T PRK10917 403 LREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPP-GRKPITTVVIP--DSRRDEVYERIREEIAKGRQAYVVCP 479 (681)
T ss_pred HHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCC-CCCCcEEEEeC--cccHHHHHHHHHHHHHcCCcEEEEEc
Confidence 3444557899999999887765544322112222221122 12335544433 222222222222222 4678999999
Q ss_pred ch--------HHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 85 ST--------QRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 85 t~--------~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.. ..++++++.|.+. ++++..+||+|++++|..++++|++|+++|||||+++++|+
T Consensus 480 ~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~Gi 545 (681)
T PRK10917 480 LIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGV 545 (681)
T ss_pred ccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCc
Confidence 54 4567888888776 57899999999999999999999999999999999999996
No 56
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.71 E-value=1.6e-16 Score=118.96 Aligned_cols=130 Identities=20% Similarity=0.163 Sum_probs=103.4
Q ss_pred HhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcC-ccchHHHHHHHHhhC--------CC
Q psy13287 6 ISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKL--------QI 76 (140)
Q Consensus 6 l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~--------~~ 76 (140)
++++.+..|++++|||.-++ .++++.+--......- . +-.+....+++. +.+|.+.+..+.+.. -.
T Consensus 366 Lr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~---R-PVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~r 440 (830)
T COG1202 366 LRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDE---R-PVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYR 440 (830)
T ss_pred HHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecC---C-CCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcC
Confidence 44556789999999999866 6676665434333222 1 122333445554 678998888888655 14
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 77 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+|+|||++|++.|..+|..|+..|++..+||++++..+|..+...|.++++.++|+|-+++.|+
T Consensus 441 GQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGV 504 (830)
T COG1202 441 GQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGV 504 (830)
T ss_pred CceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCC
Confidence 7999999999999999999999999999999999999999999999999999999999999885
No 57
>PRK02362 ski2-like helicase; Provisional
Probab=99.71 E-value=1.3e-16 Score=125.81 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=59.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc------------------------------------CceEEEEecCCCHHHHHHH
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL------------------------------------GYCCYYIHARMAQAHRNRV 118 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~------------------------------------~~~v~~~h~~~~~~~R~~~ 118 (140)
..+++||||+|++.|+.+++.|.+. ...++++||++++.+|..+
T Consensus 242 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~v 321 (737)
T PRK02362 242 EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELV 321 (737)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHH
Confidence 4689999999999999999888643 1368999999999999999
Q ss_pred HHHhhcCCccEEEEecccCCCC
Q psy13287 119 FHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 119 ~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++.|++|+++|||||+.+++|+
T Consensus 322 e~~Fr~G~i~VLvaT~tla~Gv 343 (737)
T PRK02362 322 EDAFRDRLIKVISSTPTLAAGL 343 (737)
T ss_pred HHHHHcCCCeEEEechhhhhhc
Confidence 9999999999999999999996
No 58
>PRK01172 ski2-like helicase; Provisional
Probab=99.68 E-value=7e-16 Score=120.78 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=85.5
Q ss_pred hhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEE-----EcCccch-HHHHHHHHhh--CCCCc
Q psy13287 7 SILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYA-----FVQERQK-VHCLNTLFSK--LQINQ 78 (140)
Q Consensus 7 ~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~-----~~~~~~k-~~~l~~ll~~--~~~~~ 78 (140)
+.++++.|++++|||+++. .++. .+++.+. +... ..+..+...+. .+....+ ...+..++.. .+.++
T Consensus 164 ~~~~~~~riI~lSATl~n~-~~la-~wl~~~~-~~~~--~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 238 (674)
T PRK01172 164 RYVNPDARILALSATVSNA-NELA-QWLNASL-IKSN--FRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQ 238 (674)
T ss_pred HhcCcCCcEEEEeCccCCH-HHHH-HHhCCCc-cCCC--CCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCc
Confidence 3455688999999999853 4444 3554322 1111 11111111111 1111111 1112333332 14689
Q ss_pred EEEEeCchHHHHHHHHHHHhc-------------------------CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEe
Q psy13287 79 SIIFCNSTQRVELLAKKITEL-------------------------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS 133 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~-------------------------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T 133 (140)
+||||++++.++.+++.|.+. ...++++||++++++|..+++.|++|.++|||||
T Consensus 239 vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT 318 (674)
T PRK01172 239 VLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVAT 318 (674)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEec
Confidence 999999999999999988653 1248899999999999999999999999999999
Q ss_pred cccCCCC
Q psy13287 134 GDSSAMM 140 (140)
Q Consensus 134 ~~~~rGl 140 (140)
+++++|+
T Consensus 319 ~~la~Gv 325 (674)
T PRK01172 319 PTLAAGV 325 (674)
T ss_pred chhhccC
Confidence 9999996
No 59
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.67 E-value=2.9e-15 Score=117.36 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=96.3
Q ss_pred HHHHhhCCCCCeEEEEEecCchhHHHHHHHhccC--CcEEEcCCcccCCCeEEEEEEcCcc---------chHHHHHHHH
Q psy13287 3 DHVISILPHERQILLYSATFPLTVKNFMEKHLKD--PYEINLMEELTLKGVTQYYAFVQER---------QKVHCLNTLF 71 (140)
Q Consensus 3 ~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~i~~~~~~~~~~---------~k~~~l~~ll 71 (140)
+++....+ +.|.+.+|||..+. ....+-+.+. +..|.--.... .....++..... .-+..+.+++
T Consensus 175 eRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k--~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v 250 (814)
T COG1201 175 ERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAK--KLEIKVISPVEDLIYDEELWAALYERIAELV 250 (814)
T ss_pred HHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCC--cceEEEEecCCccccccchhHHHHHHHHHHH
Confidence 44444444 89999999999854 5555555554 33332222222 233333332211 1345566665
Q ss_pred hhCCCCcEEEEeCchHHHHHHHHHHHhcC-ceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 72 SKLQINQSIIFCNSTQRVELLAKKITELG-YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 72 ~~~~~~~~lIF~~t~~~~~~~~~~L~~~~-~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++ ...+|||+||+..+|.++..|++.+ ..+..+||+++.++|..+.++|++|+++++|||+-++.|+
T Consensus 251 ~~--~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGI 318 (814)
T COG1201 251 KK--HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGI 318 (814)
T ss_pred hh--cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcc
Confidence 55 3489999999999999999999986 8999999999999999999999999999999999999986
No 60
>KOG0351|consensus
Probab=99.66 E-value=2.8e-15 Score=119.25 Aligned_cols=135 Identities=14% Similarity=0.116 Sum_probs=109.9
Q ss_pred HHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhC-CCCcEEEEe
Q psy13287 5 VISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKL-QINQSIIFC 83 (140)
Q Consensus 5 il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~ 83 (140)
+....+ ..+++.++||.++.+++.+-..++-...........++|+...+..-...+....+...++.. +...+||||
T Consensus 414 l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC 492 (941)
T KOG0351|consen 414 LRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYC 492 (941)
T ss_pred HHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEe
Confidence 344444 488999999999999999999887433334455667778887776544344454555555544 567899999
Q ss_pred CchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 84 NSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 84 ~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.++.+|+.++..|++.|++.++||++|++.+|..+-++|..++++|+|||=++++|+
T Consensus 493 ~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGI 549 (941)
T KOG0351|consen 493 LSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGI 549 (941)
T ss_pred CCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCC
Confidence 999999999999999999999999999999999999999999999999999999996
No 61
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=1.6e-15 Score=116.76 Aligned_cols=124 Identities=11% Similarity=-0.015 Sum_probs=96.0
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVEL 91 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~ 91 (140)
....||||.+....++.+.+.-++..|....+.. ....+.++.+...+|...|.+++... ...++||||+|++.++.
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~-r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~ 488 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQ-RRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASER 488 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCcc-ceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 4578999999887777777766765555543322 22344556677788999999988765 35789999999999999
Q ss_pred HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 92 LAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+++.|++.|+++..+||++++ |+..+..|+.++..|+||||+++||+
T Consensus 489 L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGt 535 (656)
T PRK12898 489 LSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGT 535 (656)
T ss_pred HHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhccc
Confidence 999999999999999999654 44555556666668999999999996
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.65 E-value=6.5e-15 Score=114.50 Aligned_cols=125 Identities=17% Similarity=0.145 Sum_probs=84.9
Q ss_pred CCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhC-CCCcEEEEeCch---
Q psy13287 12 ERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKL-QINQSIIFCNST--- 86 (140)
Q Consensus 12 ~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~--- 86 (140)
+++++++|||+++....+.. .++.....+. .......+...+. ....+...+..+.+.. ...+++|||+..
T Consensus 386 ~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p~~r~~i~~~~~--~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s 461 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLALTV--YGDLDTSIIDELPPGRKPITTVLI--KHDEKDIVYEFIEEEIAKGRQAYVVYPLIEES 461 (630)
T ss_pred CCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCCCCCCceEEEEe--CcchHHHHHHHHHHHHHhCCcEEEEEcccccc
Confidence 68999999998776544432 2221111111 1111233444433 3333333333333332 467899999875
Q ss_pred -----HHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 87 -----QRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 87 -----~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
..++.+++.|.+. +++|..+||+|++++|..++++|++|+.+|||||+++++|+
T Consensus 462 ~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~Gv 522 (630)
T TIGR00643 462 EKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGV 522 (630)
T ss_pred ccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCc
Confidence 4577888888764 78899999999999999999999999999999999999996
No 63
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.64 E-value=6.2e-15 Score=119.95 Aligned_cols=123 Identities=16% Similarity=0.252 Sum_probs=89.5
Q ss_pred CCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccc------hHHHHHHHHh---hCCCCcEEE
Q psy13287 11 HERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQ------KVHCLNTLFS---KLQINQSII 81 (140)
Q Consensus 11 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~------k~~~l~~ll~---~~~~~~~lI 81 (140)
++.|++++|||++.. .+. .++.+...+.+.... ..+.++|......+ .+..+...+. ..+++++||
T Consensus 217 pdlKvILmSATid~e--~fs-~~F~~apvI~V~Gr~--~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILV 291 (1294)
T PRK11131 217 PDLKVIITSATIDPE--RFS-RHFNNAPIIEVSGRT--YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILI 291 (1294)
T ss_pred CCceEEEeeCCCCHH--HHH-HHcCCCCEEEEcCcc--ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 368999999999843 444 445544456665322 23566666553321 2233333222 235688999
Q ss_pred EeCchHHHHHHHHHHHhcCce---EEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 82 FCNSTQRVELLAKKITELGYC---CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 82 F~~t~~~~~~~~~~L~~~~~~---v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||++.++++.+++.|++.+++ +..+||++++++|..+++. .|+.+|+||||++++|+
T Consensus 292 FLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSI 351 (1294)
T PRK11131 292 FMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSL 351 (1294)
T ss_pred EcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhcc
Confidence 999999999999999987654 7899999999999999986 58899999999999996
No 64
>KOG0350|consensus
Probab=99.63 E-value=8.1e-16 Score=113.32 Aligned_cols=130 Identities=15% Similarity=0.217 Sum_probs=114.2
Q ss_pred CCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-----CcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCc
Q psy13287 11 HERQILLYSATFPLTVKNFMEKHLKDPYEINLM-----EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNS 85 (140)
Q Consensus 11 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t 85 (140)
+..+.+++|||++.....+..--++.|....+. .-..++.+.|+.+.++..-|+-.+..++...+..++|+|+++
T Consensus 359 ~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S 438 (620)
T KOG0350|consen 359 PPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNS 438 (620)
T ss_pred chhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecc
Confidence 345689999999988888888888888665554 235788899999999988999999999988888999999999
Q ss_pred hHHHHHHHHHHH----hcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 86 TQRVELLAKKIT----ELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 86 ~~~~~~~~~~L~----~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+.+.+++..|. +.+.++..|.|.++...|.+.+++|..|++++|||||+++|||
T Consensus 439 ~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGi 497 (620)
T KOG0350|consen 439 VSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGI 497 (620)
T ss_pred hHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCC
Confidence 999999999886 3466788899999999999999999999999999999999997
No 65
>KOG0349|consensus
Probab=99.62 E-value=3.1e-15 Score=109.22 Aligned_cols=129 Identities=20% Similarity=0.351 Sum_probs=103.5
Q ss_pred CCeEEEEEecCch-hHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCcc----------------------------
Q psy13287 12 ERQILLYSATFPL-TVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQER---------------------------- 61 (140)
Q Consensus 12 ~~q~v~~SAT~~~-~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~---------------------------- 61 (140)
..|.++.|||+.. ++..+.++.|+=|.++.+. .+..++.++|.+..+.+.
T Consensus 400 rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~ 479 (725)
T KOG0349|consen 400 RLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQV 479 (725)
T ss_pred ccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccC
Confidence 4789999999974 3677888889999999997 556777788777765421
Q ss_pred --chHHHHHHHH---------hhCCCCcEEEEeCchHHHHHHHHHHHhc---CceEEEEecCCCHHHHHHHHHHhhcCCc
Q psy13287 62 --QKVHCLNTLF---------SKLQINQSIIFCNSTQRVELLAKKITEL---GYCCYYIHARMAQAHRNRVFHDFRSGLC 127 (140)
Q Consensus 62 --~k~~~l~~ll---------~~~~~~~~lIF~~t~~~~~~~~~~L~~~---~~~v~~~h~~~~~~~R~~~~~~f~~g~~ 127 (140)
+....-.+++ ++...+++||||-|+.+|+.+.+.+++. .++|.++||+..+++|.+.+++|+.+++
T Consensus 480 Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dv 559 (725)
T KOG0349|consen 480 SPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDV 559 (725)
T ss_pred CCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCe
Confidence 0111122222 2225678999999999999999999887 4689999999999999999999999999
Q ss_pred cEEEEecccCCCC
Q psy13287 128 RNLVCSGDSSAMM 140 (140)
Q Consensus 128 ~vlv~T~~~~rGl 140 (140)
+.|||||+++||+
T Consensus 560 kflictdvaargl 572 (725)
T KOG0349|consen 560 KFLICTDVAARGL 572 (725)
T ss_pred EEEEEehhhhccc
Confidence 9999999999996
No 66
>PRK09694 helicase Cas3; Provisional
Probab=99.56 E-value=2.1e-13 Score=108.53 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=61.9
Q ss_pred HHHHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhcC---ceEEEEecCCCHHHH----HHHHHHh-hcCC---ccEEEE
Q psy13287 65 HCLNTLFSKL-QINQSIIFCNSTQRVELLAKKITELG---YCCYYIHARMAQAHR----NRVFHDF-RSGL---CRNLVC 132 (140)
Q Consensus 65 ~~l~~ll~~~-~~~~~lIF~~t~~~~~~~~~~L~~~~---~~v~~~h~~~~~~~R----~~~~~~f-~~g~---~~vlv~ 132 (140)
..+..+++.. ..++++|||||++.|+++++.|++.+ .++..+||.+++.+| ..+++.| ++|+ ..||||
T Consensus 548 ~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVa 627 (878)
T PRK09694 548 TLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVA 627 (878)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEE
Confidence 4444444443 45789999999999999999999764 689999999999999 4567788 6676 479999
Q ss_pred ecccCCCC
Q psy13287 133 SGDSSAMM 140 (140)
Q Consensus 133 T~~~~rGl 140 (140)
|+++++|+
T Consensus 628 TQViE~GL 635 (878)
T PRK09694 628 TQVVEQSL 635 (878)
T ss_pred Ccchhhee
Confidence 99999996
No 67
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.55 E-value=2.4e-13 Score=85.48 Aligned_cols=89 Identities=26% Similarity=0.361 Sum_probs=78.1
Q ss_pred eEEEEEEcCccchHHHHHHHHhhCC--CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCcc
Q psy13287 51 VTQYYAFVQERQKVHCLNTLFSKLQ--INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCR 128 (140)
Q Consensus 51 i~~~~~~~~~~~k~~~l~~ll~~~~--~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~ 128 (140)
+.+.+...+ +.|...+.+++.+.. .+++||||++.+.++.+++.|.+.+..+..+||+++..+|..+++.|++|...
T Consensus 2 i~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 80 (131)
T cd00079 2 IKQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIV 80 (131)
T ss_pred cEEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 344444433 378888888888764 68899999999999999999999889999999999999999999999999999
Q ss_pred EEEEecccCCCC
Q psy13287 129 NLVCSGDSSAMM 140 (140)
Q Consensus 129 vlv~T~~~~rGl 140 (140)
+|+||+.+++|+
T Consensus 81 ili~t~~~~~G~ 92 (131)
T cd00079 81 VLVATDVIARGI 92 (131)
T ss_pred EEEEcChhhcCc
Confidence 999999999996
No 68
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.54 E-value=1.1e-13 Score=105.27 Aligned_cols=78 Identities=17% Similarity=0.182 Sum_probs=67.3
Q ss_pred hHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEe-cccCCC
Q psy13287 63 KVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS-GDSSAM 139 (140)
Q Consensus 63 k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T-~~~~rG 139 (140)
+...+.+++... .+.+++|||++.+.++.+++.|++.+.++..+||++++++|..+++.|++|+..+|||| +++++|
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG 408 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTG 408 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccc
Confidence 444455544333 35678999999999999999999999999999999999999999999999999999999 899999
Q ss_pred C
Q psy13287 140 M 140 (140)
Q Consensus 140 l 140 (140)
+
T Consensus 409 ~ 409 (501)
T PHA02558 409 I 409 (501)
T ss_pred c
Confidence 6
No 69
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.54 E-value=1.1e-13 Score=108.91 Aligned_cols=129 Identities=21% Similarity=0.166 Sum_probs=88.3
Q ss_pred CCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCccc--CCCeEEEEEEcCccch-------HHHHHHHHhhC-CCCcEE
Q psy13287 11 HERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELT--LKGVTQYYAFVQERQK-------VHCLNTLFSKL-QINQSI 80 (140)
Q Consensus 11 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~i~~~~~~~~~~~k-------~~~l~~ll~~~-~~~~~l 80 (140)
...|++.+|||+|+. .+++..+-.++......+... .-...+.+.......| ...+...+... .++|+|
T Consensus 179 ~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvL 257 (766)
T COG1204 179 ELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVL 257 (766)
T ss_pred cceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEE
Confidence 347999999999965 555544433444222222221 1122223333332222 33344444444 478999
Q ss_pred EEeCchHHHHHHHHHHHh---------------------c----------------CceEEEEecCCCHHHHHHHHHHhh
Q psy13287 81 IFCNSTQRVELLAKKITE---------------------L----------------GYCCYYIHARMAQAHRNRVFHDFR 123 (140)
Q Consensus 81 IF~~t~~~~~~~~~~L~~---------------------~----------------~~~v~~~h~~~~~~~R~~~~~~f~ 123 (140)
|||+|++.++..|+.|++ . ...++++|++++.++|..+.+.|+
T Consensus 258 vFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr 337 (766)
T COG1204 258 VFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFR 337 (766)
T ss_pred EEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHh
Confidence 999999999999999983 0 113789999999999999999999
Q ss_pred cCCccEEEEecccCCCC
Q psy13287 124 SGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 124 ~g~~~vlv~T~~~~rGl 140 (140)
+|+++|||||+.+|+|+
T Consensus 338 ~g~ikVlv~TpTLA~GV 354 (766)
T COG1204 338 KGKIKVLVSTPTLAAGV 354 (766)
T ss_pred cCCceEEEechHHhhhc
Confidence 99999999999999995
No 70
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.53 E-value=5.8e-14 Score=112.41 Aligned_cols=81 Identities=17% Similarity=0.227 Sum_probs=73.9
Q ss_pred ccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHH-hcCceEEEEecCCCHHHHHHHHHHhhcC--CccEEEEeccc
Q psy13287 60 ERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKIT-ELGYCCYYIHARMAQAHRNRVFHDFRSG--LCRNLVCSGDS 136 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g--~~~vlv~T~~~ 136 (140)
.+.|.+.|.++++...+.++||||+++..+..+++.|+ ..|+++..+||+|++.+|..+++.|+++ ..+|||||+++
T Consensus 477 ~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvg 556 (956)
T PRK04914 477 FDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIG 556 (956)
T ss_pred cCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhh
Confidence 34578889999988778899999999999999999995 5699999999999999999999999984 69999999999
Q ss_pred CCCC
Q psy13287 137 SAMM 140 (140)
Q Consensus 137 ~rGl 140 (140)
++|+
T Consensus 557 seGl 560 (956)
T PRK04914 557 SEGR 560 (956)
T ss_pred ccCC
Confidence 9996
No 71
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.53 E-value=2.1e-13 Score=96.98 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=87.8
Q ss_pred CCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC--CcccCCCeEEEEEEcCc-cchH------HHHHHHHhhC--CCCc
Q psy13287 10 PHERQILLYSATFPLTVKNFMEKHLKDPYEINLM--EELTLKGVTQYYAFVQE-RQKV------HCLNTLFSKL--QINQ 78 (140)
Q Consensus 10 ~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~i~~~~~~~~~-~~k~------~~l~~ll~~~--~~~~ 78 (140)
..+..++++|||.|..++..+...-.. .+.+. -+..+-.+. .++|+.+ ..++ ..|..++++. ...+
T Consensus 231 k~~g~~IylTATp~k~l~r~~~~g~~~--~~klp~RfH~~pLpvP-kf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 231 KKEGATIYLTATPTKKLERKILKGNLR--ILKLPARFHGKPLPVP-KFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred cccCceEEEecCChHHHHHHhhhCCee--EeecchhhcCCCCCCC-ceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCc
Confidence 345679999999997766554333222 22222 111111122 3344432 2222 3577777655 3578
Q ss_pred EEEEeCchHHHHHHHHHHHh-cC-ceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 79 SIIFCNSTQRVELLAKKITE-LG-YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~-~~-~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++||+++.+..+.+++.|.+ .. ..++++|+. .+.|.+..+.||+|++++||+|++++||.
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGV 369 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGV 369 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhccc
Confidence 99999999999999999954 43 467999998 77899999999999999999999999995
No 72
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.52 E-value=3e-13 Score=110.54 Aligned_cols=130 Identities=15% Similarity=0.194 Sum_probs=89.6
Q ss_pred HHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCc------cchHHHHHHHHhh---
Q psy13287 3 DHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQE------RQKVHCLNTLFSK--- 73 (140)
Q Consensus 3 ~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~ll~~--- 73 (140)
++++... ++.|++++|||++. ..+ ..++.+...+.+..... .+..+|..... .++.+.+...+..
T Consensus 203 k~il~~r-pdLKlIlmSATld~--~~f-a~~F~~apvI~V~Gr~~--PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~ 276 (1283)
T TIGR01967 203 KQLLPRR-PDLKIIITSATIDP--ERF-SRHFNNAPIIEVSGRTY--PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA 276 (1283)
T ss_pred HHHHhhC-CCCeEEEEeCCcCH--HHH-HHHhcCCCEEEECCCcc--cceeEEecccccccchhhhHHHHHHHHHHHHHh
Confidence 4444433 47899999999974 334 44455444565543222 24444444321 1233444443432
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHhcC---ceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 74 LQINQSIIFCNSTQRVELLAKKITELG---YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 74 ~~~~~~lIF~~t~~~~~~~~~~L~~~~---~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
..++++|||+++.++++.+++.|++.+ +.+..+||++++++|..+++.+ +..+|+||||++++|+
T Consensus 277 ~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSL 344 (1283)
T TIGR01967 277 EGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSL 344 (1283)
T ss_pred hCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhcc
Confidence 256889999999999999999998764 4689999999999999997764 3469999999999996
No 73
>KOG0353|consensus
Probab=99.52 E-value=4.6e-14 Score=101.83 Aligned_cols=137 Identities=13% Similarity=0.086 Sum_probs=113.0
Q ss_pred HHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCc--cchHHHHHHHHhhC-CCCcEE
Q psy13287 4 HVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQE--RQKVHCLNTLFSKL-QINQSI 80 (140)
Q Consensus 4 ~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~--~~k~~~l~~ll~~~-~~~~~l 80 (140)
.|+++--++.+++.++||.++++...++..+.-..-+....+..++++...+..-+. ++-.+-+.++++.. ....+|
T Consensus 242 ~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgi 321 (695)
T KOG0353|consen 242 GILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGI 321 (695)
T ss_pred HHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcce
Confidence 356666678899999999999999999998874434444445566777777766543 34466677777543 456689
Q ss_pred EEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 81 IFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 81 IF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
|||-+++++|.++..|...|+....||+.|.+++|..+-+.|..|++.|+|+|-.+++|+
T Consensus 322 iyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgi 381 (695)
T KOG0353|consen 322 IYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGI 381 (695)
T ss_pred EEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccC
Confidence 999999999999999999999999999999999999999999999999999999999986
No 74
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.52 E-value=4.5e-13 Score=102.42 Aligned_cols=131 Identities=16% Similarity=0.253 Sum_probs=92.4
Q ss_pred HHhhCCC-CCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccC--CCeEEEEEEcCccchHHHHHHHHhhC-CCCcEE
Q psy13287 5 VISILPH-ERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTL--KGVTQYYAFVQERQKVHCLNTLFSKL-QINQSI 80 (140)
Q Consensus 5 il~~~~~-~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~l 80 (140)
.+..... .+..+.||||+-|+...+. .+++- .+++-++.++ ..|.-++ ++.+.+.+++..+-+.. +..|+.
T Consensus 403 ~L~~KG~~~Ph~LvMTATPIPRTLAlt--~fgDl-dvS~IdElP~GRkpI~T~~--i~~~~~~~v~e~i~~ei~~GrQaY 477 (677)
T COG1200 403 ALREKGEQNPHVLVMTATPIPRTLALT--AFGDL-DVSIIDELPPGRKPITTVV--IPHERRPEVYERIREEIAKGRQAY 477 (677)
T ss_pred HHHHhCCCCCcEEEEeCCCchHHHHHH--Hhccc-cchhhccCCCCCCceEEEE--eccccHHHHHHHHHHHHHcCCEEE
Confidence 3455555 6889999999988876654 44442 2333233222 3344433 34445555555444443 567899
Q ss_pred EEeCchH--------HHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 81 IFCNSTQ--------RVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 81 IF~~t~~--------~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+-|+-.+ .|+++++.|+.. ++++..+||.|+.+++.+++++|++|+++|||||++.+.|+
T Consensus 478 ~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGV 547 (677)
T COG1200 478 VVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGV 547 (677)
T ss_pred EEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecc
Confidence 9997654 466778888754 67899999999999999999999999999999999999885
No 75
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.52 E-value=4.9e-13 Score=104.10 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=69.9
Q ss_pred chHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCC
Q psy13287 62 QKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAM 139 (140)
Q Consensus 62 ~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rG 139 (140)
.+++.+.+.+... +..++||||+|++.++.+++.|.+.|+++..+||++++.+|.+++++|+.|++++||||+++++|
T Consensus 426 ~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 426 GQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred chHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 3455555555432 46789999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q psy13287 140 M 140 (140)
Q Consensus 140 l 140 (140)
+
T Consensus 506 f 506 (655)
T TIGR00631 506 L 506 (655)
T ss_pred e
Confidence 5
No 76
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.48 E-value=6.5e-13 Score=103.84 Aligned_cols=123 Identities=10% Similarity=0.045 Sum_probs=91.3
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEE-EEEEcCccchHHHHHHHHhh--CCCCcEEEEeCchHHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ-YYAFVQERQKVHCLNTLFSK--LQINQSIIFCNSTQRVE 90 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~ 90 (140)
....+|.|......++.+.+ +-..+.+.+..+.....+ -.+++...+|...+.+.+.. ....|+||||+|++.++
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY--~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se 438 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETY--SLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSE 438 (762)
T ss_pred hhcccCCCChhHHHHHHHHh--CCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHH
Confidence 46778888765544443322 222344433222211111 23556677899888888865 35778999999999999
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+++.|.+.|+++..+||++++.+|..+.++++.| .|+||||+++||+
T Consensus 439 ~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGt 486 (762)
T TIGR03714 439 IYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGT 486 (762)
T ss_pred HHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEcccccccc
Confidence 99999999999999999999999998888888777 7999999999995
No 77
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=7.2e-13 Score=104.23 Aligned_cols=123 Identities=13% Similarity=0.077 Sum_probs=90.3
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEE-EEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ-YYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVE 90 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~ 90 (140)
.+..+|.|....-.++. ... +-..+.+.+..+.....+ -.+++...+|...+...+... ...++||||+|++.++
T Consensus 365 kl~GmTGTa~t~~~e~~-~~Y-~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se 442 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFF-EVY-NMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSE 442 (790)
T ss_pred HHhccCCCChHHHHHHH-HHh-CCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 46778889865433332 222 223344433222111111 234456678999888888653 5788999999999999
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+++.|.+.|+++..+||+++++++..+...++.| +|+||||+++||+
T Consensus 443 ~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~ 490 (790)
T PRK09200 443 TFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGT 490 (790)
T ss_pred HHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCc
Confidence 99999999999999999999999998888888777 8999999999996
No 78
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.47 E-value=1.3e-12 Score=102.02 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=70.0
Q ss_pred chHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCC
Q psy13287 62 QKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAM 139 (140)
Q Consensus 62 ~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rG 139 (140)
.+++.+.+.+... ...++||||+|++.++.+++.|.+.|+++..+||++++.+|..++++|+.|++.++|||+++++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 3455555555433 46789999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q psy13287 140 M 140 (140)
Q Consensus 140 l 140 (140)
+
T Consensus 510 f 510 (652)
T PRK05298 510 L 510 (652)
T ss_pred c
Confidence 6
No 79
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=1.7e-12 Score=102.24 Aligned_cols=123 Identities=11% Similarity=0.072 Sum_probs=91.3
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEE-EEEEcCccchHHHHHHHHhh--CCCCcEEEEeCchHHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ-YYAFVQERQKVHCLNTLFSK--LQINQSIIFCNSTQRVE 90 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~ 90 (140)
....+|.|......++.+.+ +-..+.+.++.+.....+ -.++....+|...+.+.+.. ....|+||||+|++.++
T Consensus 367 kl~GmTGTa~te~~E~~~iY--~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se 444 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIY--NLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSE 444 (830)
T ss_pred hhcccCCCcHHHHHHHHHHh--CCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 45678888865544333332 222343433221111111 12334566789899888865 46778999999999999
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+++.|.+.|+++..+||+ +.+|+..+.+|+.|...|+||||+|+||+
T Consensus 445 ~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGt 492 (830)
T PRK12904 445 LLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGT 492 (830)
T ss_pred HHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCc
Confidence 9999999999999999996 88999999999999999999999999995
No 80
>KOG0951|consensus
Probab=99.44 E-value=1.5e-12 Score=104.58 Aligned_cols=128 Identities=21% Similarity=0.274 Sum_probs=98.8
Q ss_pred CCCeEEEEEecCchhHHHHHHHhcc-CCcEEEcC-CcccCCCeEEEEEEcC--ccchH------HHHHHHHhhCCCCcEE
Q psy13287 11 HERQILLYSATFPLTVKNFMEKHLK-DPYEINLM-EELTLKGVTQYYAFVQ--ERQKV------HCLNTLFSKLQINQSI 80 (140)
Q Consensus 11 ~~~q~v~~SAT~~~~~~~~~~~~~~-~~~~i~~~-~~~~~~~i~~~~~~~~--~~~k~------~~l~~ll~~~~~~~~l 80 (140)
.++..+.+|||+|+. .+. ..|++ ++.-+... +.-.+-.+.|.++-+. ++.|. ....++++.....|+|
T Consensus 473 e~~RlVGLSATLPNy-~DV-~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVL 550 (1674)
T KOG0951|consen 473 EGSRLVGLSATLPNY-EDV-ASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVL 550 (1674)
T ss_pred cCceeeeecccCCch-hhh-HHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEE
Confidence 368899999999977 333 33444 44333333 3445556888888764 33333 4466777777789999
Q ss_pred EEeCchHHHHHHHHHHHh-------------------------------------cCceEEEEecCCCHHHHHHHHHHhh
Q psy13287 81 IFCNSTQRVELLAKKITE-------------------------------------LGYCCYYIHARMAQAHRNRVFHDFR 123 (140)
Q Consensus 81 IF~~t~~~~~~~~~~L~~-------------------------------------~~~~v~~~h~~~~~~~R~~~~~~f~ 123 (140)
||+.+|+++-+.|+++|+ ..+.++.+|+||+..+|..+.+-|+
T Consensus 551 VFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~ 630 (1674)
T KOG0951|consen 551 VFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFA 630 (1674)
T ss_pred EEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHh
Confidence 999999999999998883 1456899999999999999999999
Q ss_pred cCCccEEEEecccCCCC
Q psy13287 124 SGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 124 ~g~~~vlv~T~~~~rGl 140 (140)
+|.+++||+|-.+++|+
T Consensus 631 ~g~iqvlvstatlawgv 647 (1674)
T KOG0951|consen 631 DGHIQVLVSTATLAWGV 647 (1674)
T ss_pred cCceeEEEeehhhhhhc
Confidence 99999999999999995
No 81
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=3.2e-12 Score=101.04 Aligned_cols=123 Identities=7% Similarity=0.037 Sum_probs=89.0
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEE-EEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ-YYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVE 90 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~ 90 (140)
..-.+|.|......++.+.+- -..+.+.++.+.....+ -.++....+|...+.+-+... ...|+||||+|++.++
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~--l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE 458 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYN--LEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASE 458 (896)
T ss_pred hhccCCCCChhHHHHHHHHhC--CCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 345678887655444433332 22333432221111111 123445667877777766433 5678999999999999
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+++.|.+.|+++..+||++.+.+|..+.+.|+.| .|+||||+|+||+
T Consensus 459 ~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGt 506 (896)
T PRK13104 459 FLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGT 506 (896)
T ss_pred HHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCc
Confidence 99999999999999999999999999999999999 5999999999995
No 82
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.40 E-value=5.9e-12 Score=94.08 Aligned_cols=125 Identities=16% Similarity=0.046 Sum_probs=89.2
Q ss_pred CCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHHHHH
Q psy13287 12 ERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVEL 91 (140)
Q Consensus 12 ~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~ 91 (140)
.+|++++|||+.+.-.+..... -...+....+..-|.+.-+-..-.-++-+..+.+-++ .+.++||-+-|++.||.
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~--vveQiIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~--~~eRvLVTtLTKkmAEd 461 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGN--VVEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVA--KNERVLVTTLTKKMAED 461 (663)
T ss_pred cCCEEEEECCCChHHHHhccCc--eeEEeecCCCCCCCceeeecCCCcHHHHHHHHHHHHh--cCCeEEEEeehHHHHHH
Confidence 4799999999876643332211 1112323344455544443222111222222222222 46899999999999999
Q ss_pred HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 92 LAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+.++|...|+++.++|++++.-+|.++++++|.|..+|||.-|++-.||
T Consensus 462 LT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGL 510 (663)
T COG0556 462 LTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (663)
T ss_pred HHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccC
Confidence 9999999999999999999999999999999999999999999998886
No 83
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.40 E-value=1.1e-11 Score=99.02 Aligned_cols=138 Identities=21% Similarity=0.270 Sum_probs=106.2
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcC---------ccchHHHHHHHHh
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQ---------ERQKVHCLNTLFS 72 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~---------~~~k~~~l~~ll~ 72 (140)
|.++++..+.+.|+++.|||+.+. .+..+.+++......+..+..+....+.+.+-+ ..++...+..+..
T Consensus 222 L~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~ 300 (851)
T COG1205 222 LLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAA 300 (851)
T ss_pred HHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHH
Confidence 455666677789999999999866 678888888766664555445555555555544 2255555555554
Q ss_pred hC--CCCcEEEEeCchHHHHHHH----HHHHhcC----ceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 73 KL--QINQSIIFCNSTQRVELLA----KKITELG----YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 73 ~~--~~~~~lIF~~t~~~~~~~~----~~L~~~~----~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.. +.-++|+|+.++..++.++ +.+...+ ..+..++|++..++|..+...|++|++.++++|+.+..|+
T Consensus 301 ~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alelgi 378 (851)
T COG1205 301 LLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGI 378 (851)
T ss_pred HHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhce
Confidence 44 5789999999999999997 4444445 5799999999999999999999999999999999998885
No 84
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.38 E-value=6.6e-12 Score=97.91 Aligned_cols=123 Identities=10% Similarity=0.027 Sum_probs=87.8
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEE-EEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ-YYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVE 90 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~ 90 (140)
....+|.|......++.+.+ + -..+.+.+..+.....+ -.++....+|...+.+.+... ...|+||||+|.+.++
T Consensus 342 kl~GmTGTa~te~~E~~~iY-~-l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se 419 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIY-N-LEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSE 419 (745)
T ss_pred hhhccCCCcHHHHHHHHHHh-C-CCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 45678888865544333332 2 22333432221111111 122334556777776655332 5778999999999999
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+++.|.+.|+++..+||+ +.+|+..+..|+.+...|+||||+++||.
T Consensus 420 ~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGt 467 (745)
T TIGR00963 420 LLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGT 467 (745)
T ss_pred HHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCc
Confidence 9999999999999999999 88999999999999999999999999995
No 85
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.37 E-value=1.8e-11 Score=98.32 Aligned_cols=135 Identities=19% Similarity=0.148 Sum_probs=105.8
Q ss_pred HHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEE
Q psy13287 3 DHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIF 82 (140)
Q Consensus 3 ~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF 82 (140)
++-++.+..+..++-+|||+-|+..++....+++-..|...+....+ |.-++...++.--.+.+..-+. ..+|+..-
T Consensus 733 KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p-V~T~V~~~d~~~ireAI~REl~--RgGQvfYv 809 (1139)
T COG1197 733 KEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP-VKTFVSEYDDLLIREAILRELL--RGGQVFYV 809 (1139)
T ss_pred HHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc-eEEEEecCChHHHHHHHHHHHh--cCCEEEEE
Confidence 34567777888999999999999999999888886666554443333 4444443333222233333222 47888888
Q ss_pred eCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 83 CNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 83 ~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+|.+++.+++++.|++. ..++++-||.|+..+-+.++.+|-+|+.+|||||++.+-|+
T Consensus 810 ~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGI 869 (1139)
T COG1197 810 HNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGI 869 (1139)
T ss_pred ecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCc
Confidence 89999999999999998 77899999999999999999999999999999999999886
No 86
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.37 E-value=4.7e-12 Score=93.88 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=68.1
Q ss_pred chHHHHHHHHhhC----CCCcEEEEeCchHHHHHHHHHHHhcCceEE-EEec--------CCCHHHHHHHHHHhhcCCcc
Q psy13287 62 QKVHCLNTLFSKL----QINQSIIFCNSTQRVELLAKKITELGYCCY-YIHA--------RMAQAHRNRVFHDFRSGLCR 128 (140)
Q Consensus 62 ~k~~~l~~ll~~~----~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~-~~h~--------~~~~~~R~~~~~~f~~g~~~ 128 (140)
.|++.+.+++++. +..++|||++.+++|+.+.++|.+.+..+. .+-| ||++.++.+++++|++|+.+
T Consensus 348 PKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n 427 (542)
T COG1111 348 PKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN 427 (542)
T ss_pred ccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce
Confidence 5777777776543 567899999999999999999999987663 4444 69999999999999999999
Q ss_pred EEEEecccCCCC
Q psy13287 129 NLVCSGDSSAMM 140 (140)
Q Consensus 129 vlv~T~~~~rGl 140 (140)
|||||++++.||
T Consensus 428 VLVaTSVgEEGL 439 (542)
T COG1111 428 VLVATSVGEEGL 439 (542)
T ss_pred EEEEcccccccC
Confidence 999999999997
No 87
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=1.4e-11 Score=97.33 Aligned_cols=123 Identities=10% Similarity=0.038 Sum_probs=88.0
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEE-EEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQY-YAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVE 90 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~-~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~ 90 (140)
..-.+|.|......++.+.+ +-..+.+.++.+.....+- .++.....|...+.+-+... ...|+||||+|.+.++
T Consensus 386 kL~GMTGTa~te~~Ef~~iY--~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se 463 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIY--GLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSE 463 (908)
T ss_pred HhhcccCCChHHHHHHHHHh--CCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHH
Confidence 34567888776544433333 2223434332221111111 22334566776666655543 4678999999999999
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.++..|.+.|+++..+|++.++.+|..+.+.|+.|. |+||||+++||.
T Consensus 464 ~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGT 511 (908)
T PRK13107 464 LLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGT 511 (908)
T ss_pred HHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCc
Confidence 999999999999999999999999999999999996 999999999994
No 88
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.34 E-value=1.9e-11 Score=97.30 Aligned_cols=122 Identities=11% Similarity=0.045 Sum_probs=90.4
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCccc--CCCeEEEEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELT--LKGVTQYYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRV 89 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~ 89 (140)
+.-.+|.|......++...+ +-..+.+.++.+ ..... -.++....+|...|.+.+... ...|+||||+|++.+
T Consensus 535 kLaGMTGTA~te~~Ef~~iY--~L~Vv~IPTnrP~~R~D~~-d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~s 611 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIY--KLDVVVIPTNKPIVRKDMD-DLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVS 611 (1025)
T ss_pred hhcccCCCChhHHHHHHHHh--CCcEEECCCCCCcceecCC-CeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHH
Confidence 34567778765544443332 222333432221 11111 133445667999999988654 678999999999999
Q ss_pred HHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 90 ELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 90 ~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+.+++.|++.|+++..+|+ .+.+|+..+-.|+.+...|+||||+|+||+
T Consensus 612 E~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGt 660 (1025)
T PRK12900 612 ETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGT 660 (1025)
T ss_pred HHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCC
Confidence 9999999999999999998 488999999999999999999999999995
No 89
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.33 E-value=1.7e-11 Score=96.39 Aligned_cols=123 Identities=9% Similarity=0.023 Sum_probs=88.6
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEE-EEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ-YYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVE 90 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~ 90 (140)
+...+|.|......++.+.+ +-..+.+.+..+.....+ -.++.....|...+.+.+... ...|+||||+|+..++
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY--~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se 454 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIY--NMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSE 454 (796)
T ss_pred hhhccCCCCHHHHHHHHHHh--CCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 46678888865433333222 222343433221111111 123335567888888888544 6789999999999999
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+++.|.+.|+++..+||++...++..+.+.++.|. |+||||+++||.
T Consensus 455 ~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGt 502 (796)
T PRK12906 455 RLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGT 502 (796)
T ss_pred HHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCC
Confidence 999999999999999999999888999988888885 999999999995
No 90
>PRK13766 Hef nuclease; Provisional
Probab=99.31 E-value=2e-11 Score=97.23 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=72.6
Q ss_pred cchHHHHHHHHhh----CCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecC--------CCHHHHHHHHHHhhcCCcc
Q psy13287 61 RQKVHCLNTLFSK----LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAR--------MAQAHRNRVFHDFRSGLCR 128 (140)
Q Consensus 61 ~~k~~~l~~ll~~----~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~--------~~~~~R~~~~~~f~~g~~~ 128 (140)
..|...|.++|+. .++.++||||++++.|+.+++.|...++++..+||. +++.+|..++++|++|+.+
T Consensus 346 ~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~ 425 (773)
T PRK13766 346 HPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN 425 (773)
T ss_pred ChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCC
Confidence 4577788888865 467899999999999999999999999999999986 9999999999999999999
Q ss_pred EEEEecccCCCC
Q psy13287 129 NLVCSGDSSAMM 140 (140)
Q Consensus 129 vlv~T~~~~rGl 140 (140)
+||||+++++|+
T Consensus 426 vLvaT~~~~eGl 437 (773)
T PRK13766 426 VLVSTSVAEEGL 437 (773)
T ss_pred EEEECChhhcCC
Confidence 999999999996
No 91
>KOG0329|consensus
Probab=99.30 E-value=7.7e-13 Score=90.99 Aligned_cols=88 Identities=38% Similarity=0.660 Sum_probs=80.0
Q ss_pred CHHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCc--ccCCCeEEEEEEcCccchHHHHHHHHhhCCCCc
Q psy13287 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEE--LTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQ 78 (140)
Q Consensus 1 ~l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~ 78 (140)
|+.+|.+..|...|.+.||||++.+++-.+++++.+|..+.++++ ...-++.|+|+..++.+|-..+.++|+.+...|
T Consensus 206 DvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQ 285 (387)
T KOG0329|consen 206 DVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQ 285 (387)
T ss_pred HHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcc
Confidence 467889999999999999999999999999999999999988855 467789999999999999999999999999999
Q ss_pred EEEEeCchHH
Q psy13287 79 SIIFCNSTQR 88 (140)
Q Consensus 79 ~lIF~~t~~~ 88 (140)
++||+-|...
T Consensus 286 VvIFvKsv~R 295 (387)
T KOG0329|consen 286 VVIFVKSVQR 295 (387)
T ss_pred eeEeeehhhh
Confidence 9999988766
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.22 E-value=1.7e-10 Score=87.92 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=47.4
Q ss_pred HHHHHHHHHhc--CceEEEEecCCCHHHH--HHHHHHhhcCCccEEEEecccCCCC
Q psy13287 89 VELLAKKITEL--GYCCYYIHARMAQAHR--NRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 89 ~~~~~~~L~~~--~~~v~~~h~~~~~~~R--~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+++++++|.+. +.++..+|++++...+ ..++++|++|+.+|||+|+++++|+
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~ 326 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGH 326 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCC
Confidence 68999999887 7899999999987665 8999999999999999999999995
No 93
>KOG0952|consensus
Probab=99.21 E-value=2.6e-10 Score=90.75 Aligned_cols=128 Identities=20% Similarity=0.227 Sum_probs=90.3
Q ss_pred CCCCCeEEEEEecCchhHHHHHHHhccCC-c-E-EEcCCcccCCCeEEEEEEcCcc---c--------hHHHHHHHHhhC
Q psy13287 9 LPHERQILLYSATFPLTVKNFMEKHLKDP-Y-E-INLMEELTLKGVTQYYAFVQER---Q--------KVHCLNTLFSKL 74 (140)
Q Consensus 9 ~~~~~q~v~~SAT~~~~~~~~~~~~~~~~-~-~-i~~~~~~~~~~i~~~~~~~~~~---~--------k~~~l~~ll~~~ 74 (140)
.....+++++|||+|+. .+ +-.|++-+ . - ...+..-.+-.+.+.++=.+.. . ..+.+.+.+.+
T Consensus 272 sqs~IRivgLSATlPN~-eD-vA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~- 348 (1230)
T KOG0952|consen 272 SQSMIRIVGLSATLPNY-ED-VARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQE- 348 (1230)
T ss_pred hhhheEEEEeeccCCCH-HH-HHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHc-
Confidence 34567899999999976 33 34566632 2 1 2222233444555555544322 1 23333343333
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----------------C-------ceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----------------G-------YCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----------------~-------~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
+.|++|||.+++.+.+.|+.|.+. + ...+.+|++|..++|..+.+.|++|-++||+
T Consensus 349 -g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~ 427 (1230)
T KOG0952|consen 349 -GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLC 427 (1230)
T ss_pred -CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEE
Confidence 678999999999999999999752 1 2368999999999999999999999999999
Q ss_pred EecccCCCC
Q psy13287 132 CSGDSSAMM 140 (140)
Q Consensus 132 ~T~~~~rGl 140 (140)
||..+++|.
T Consensus 428 cTaTLAwGV 436 (1230)
T KOG0952|consen 428 CTATLAWGV 436 (1230)
T ss_pred ecceeeecc
Confidence 999999995
No 94
>KOG0354|consensus
Probab=99.21 E-value=9.3e-11 Score=91.03 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=66.7
Q ss_pred cchHHHHHHHHhhC----CCCcEEEEeCchHHHHHHHHHHHhc---CceEEEEec--------CCCHHHHHHHHHHhhcC
Q psy13287 61 RQKVHCLNTLFSKL----QINQSIIFCNSTQRVELLAKKITEL---GYCCYYIHA--------RMAQAHRNRVFHDFRSG 125 (140)
Q Consensus 61 ~~k~~~l~~ll~~~----~~~~~lIF~~t~~~~~~~~~~L~~~---~~~v~~~h~--------~~~~~~R~~~~~~f~~g 125 (140)
..|++.+.+++.+. +..++||||.+|+.|+.+..+|.+. +++...+-| +|++.++.+++++|++|
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 46777777776443 4678999999999999999999842 445444444 79999999999999999
Q ss_pred CccEEEEecccCCCC
Q psy13287 126 LCRNLVCSGDSSAMM 140 (140)
Q Consensus 126 ~~~vlv~T~~~~rGl 140 (140)
++++||||++++.||
T Consensus 474 ~~NvLVATSV~EEGL 488 (746)
T KOG0354|consen 474 EINVLVATSVAEEGL 488 (746)
T ss_pred CccEEEEecchhccC
Confidence 999999999999997
No 95
>KOG0352|consensus
Probab=99.17 E-value=5.7e-11 Score=87.03 Aligned_cols=129 Identities=15% Similarity=0.123 Sum_probs=92.5
Q ss_pred CCCeEEEEEecCchhHHHHHHHhcc--CCcEEEcCCcccCCCeEEEEEEcC-ccchHHHHHHHHh-hC---------C--
Q psy13287 11 HERQILLYSATFPLTVKNFMEKHLK--DPYEINLMEELTLKGVTQYYAFVQ-ERQKVHCLNTLFS-KL---------Q-- 75 (140)
Q Consensus 11 ~~~q~v~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~-~~---------~-- 75 (140)
++.+-+.++||.++.|++.+..-++ +|.-+.- .+.-..|+.+-..+-+ -++-+..|.+.-. .+ +
T Consensus 175 ~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk-TP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~ 253 (641)
T KOG0352|consen 175 PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFK-TPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKT 253 (641)
T ss_pred CCCceEEeecccChhHHHHHHHHHhhcCcHHhcc-CcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCC
Confidence 3667899999999999998877654 5543322 2222222222111111 1233344444321 22 1
Q ss_pred -CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 76 -INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 76 -~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+=+||||-|++.||.+|=.|...|+....||+++...+|-++-++|-+|++.|+++|.-+++|+
T Consensus 254 ~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGV 319 (641)
T KOG0352|consen 254 FTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGV 319 (641)
T ss_pred cCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEecccccc
Confidence 12379999999999999999999999999999999999999999999999999999999888874
No 96
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.17 E-value=4.3e-10 Score=89.10 Aligned_cols=129 Identities=18% Similarity=0.193 Sum_probs=88.9
Q ss_pred CCeEEEEEecCchhHHHHHHHhccCCcEEEcCCc----ccCCCeEEE-EEEcCccchHHHHHHHHhhC-CCCcEEEEeCc
Q psy13287 12 ERQILLYSATFPLTVKNFMEKHLKDPYEINLMEE----LTLKGVTQY-YAFVQERQKVHCLNTLFSKL-QINQSIIFCNS 85 (140)
Q Consensus 12 ~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~i~~~-~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t 85 (140)
+..++++|||+|+...+..+..+.....+..... ...+.+... ...+................ ..++++|-|||
T Consensus 370 g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NT 449 (733)
T COG1203 370 GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNT 449 (733)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEec
Confidence 5789999999999999988888775444433211 011111111 01111110011222222222 46789999999
Q ss_pred hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhh----cCCccEEEEecccCCCC
Q psy13287 86 TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFR----SGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 86 ~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~----~g~~~vlv~T~~~~rGl 140 (140)
+..|.++++.|+..+..+..+||.+....|.+.++.++ .+...|+|||.+.+.|+
T Consensus 450 V~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 450 VDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 99999999999998778999999999999999998665 46789999999998875
No 97
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.14 E-value=1.2e-09 Score=86.73 Aligned_cols=134 Identities=10% Similarity=0.120 Sum_probs=100.0
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcC-ccc-hHHHHHHHHh---hCCC
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQ-ERQ-KVHCLNTLFS---KLQI 76 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~-k~~~l~~ll~---~~~~ 76 (140)
+++++...+++..+|.+|||+. -+....+|+++..+++..-..+ |..+|.... .++ -.+.+...+. ....
T Consensus 185 lk~~~~~rr~DLKiIimSATld---~~rfs~~f~~apvi~i~GR~fP--Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~ 259 (845)
T COG1643 185 LKDLLARRRDDLKLIIMSATLD---AERFSAYFGNAPVIEIEGRTYP--VEIRYLPEAEADYILLDAIVAAVDIHLREGS 259 (845)
T ss_pred HHHHHhhcCCCceEEEEecccC---HHHHHHHcCCCCEEEecCCccc--eEEEecCCCCcchhHHHHHHHHHHHhccCCC
Confidence 4567777777899999999998 4467778888777777643333 333443222 223 2333333332 2257
Q ss_pred CcEEEEeCchHHHHHHHHHHHh----cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 77 NQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~----~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+.+|||.+-.++.+..++.|++ ....+..+||.++.+++..+++.-..|+-+|+++||+++-+|
T Consensus 260 GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSL 327 (845)
T COG1643 260 GSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSL 327 (845)
T ss_pred CCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccce
Confidence 8899999999999999999998 247899999999999999999988888888999999997553
No 98
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.13 E-value=1.6e-10 Score=66.63 Aligned_cols=47 Identities=26% Similarity=0.353 Sum_probs=44.6
Q ss_pred HHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 94 KKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 94 ~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+.|++.++++..+||++++++|..++++|++|+.++||||+++++|+
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi 47 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGI 47 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSS
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccc
Confidence 46788899999999999999999999999999999999999999996
No 99
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.11 E-value=2.7e-09 Score=83.98 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhc--CceEEEEecCCC--HHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 88 RVELLAKKITEL--GYCCYYIHARMA--QAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 88 ~~~~~~~~L~~~--~~~v~~~h~~~~--~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.++++++.|++. +.++..+|+++. ++++..++++|++|+.+|||+|+++++|+
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~ 494 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGH 494 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCC
Confidence 477899999887 889999999986 56799999999999999999999999996
No 100
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=8.4e-10 Score=86.57 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=64.4
Q ss_pred ccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC-CccEEEEeccc
Q psy13287 60 ERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG-LCRNLVCSGDS 136 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~vlv~T~~~ 136 (140)
++.|+..+..+++.. ...++||||++...++.+++.| .+.++||++++.+|..++++|++| ++++||+|+++
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVg 552 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVG 552 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEeccc
Confidence 344666666677644 5679999999999999999988 356799999999999999999975 88999999999
Q ss_pred CCCC
Q psy13287 137 SAMM 140 (140)
Q Consensus 137 ~rGl 140 (140)
.+|+
T Consensus 553 deGI 556 (732)
T TIGR00603 553 DTSI 556 (732)
T ss_pred cccc
Confidence 9996
No 101
>KOG0950|consensus
Probab=99.01 E-value=1.9e-09 Score=85.16 Aligned_cols=65 Identities=26% Similarity=0.377 Sum_probs=55.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh--------------------------------------cCceEEEEecCCCHHHHHH
Q psy13287 76 INQSIIFCNSTQRVELLAKKITE--------------------------------------LGYCCYYIHARMAQAHRNR 117 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~--------------------------------------~~~~v~~~h~~~~~~~R~~ 117 (140)
+.++||||+++..||.+|..+-+ .-+.|+++|+++..++|..
T Consensus 460 ~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~ 539 (1008)
T KOG0950|consen 460 GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREI 539 (1008)
T ss_pred CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHH
Confidence 44699999999999988765532 0234899999999999999
Q ss_pred HHHHhhcCCccEEEEecccCCCC
Q psy13287 118 VFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 118 ~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+...|++|.+.+++||+.++.|.
T Consensus 540 iE~afr~g~i~vl~aTSTlaaGV 562 (1008)
T KOG0950|consen 540 IEAAFREGNIFVLVATSTLAAGV 562 (1008)
T ss_pred HHHHHHhcCeEEEEecchhhccC
Confidence 99999999999999999998884
No 102
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.92 E-value=4.6e-09 Score=60.46 Aligned_cols=50 Identities=24% Similarity=0.390 Sum_probs=46.9
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+++.|++.++.+..+||++++.+|..+++.|++|...+||+|+.++.|+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi 51 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGL 51 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCc
Confidence 57788888899999999999999999999999999999999999999985
No 103
>KOG0922|consensus
Probab=98.87 E-value=3.8e-08 Score=75.51 Aligned_cols=129 Identities=10% Similarity=0.155 Sum_probs=94.7
Q ss_pred HHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccc----hHHHHHHHHhhCCCCc
Q psy13287 3 DHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQ----KVHCLNTLFSKLQINQ 78 (140)
Q Consensus 3 ~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~----k~~~l~~ll~~~~~~~ 78 (140)
++|++.-+ +...+++|||+. .+....+|.+...+.+.....+ ++..|..-+..+ -+..+.++-...+++-
T Consensus 187 Kki~~~R~-~LklIimSATld---a~kfS~yF~~a~i~~i~GR~fP--Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GD 260 (674)
T KOG0922|consen 187 KKILKKRP-DLKLIIMSATLD---AEKFSEYFNNAPILTIPGRTFP--VEILYLKEPTADYVDAALITVIQIHLTEPPGD 260 (674)
T ss_pred HHHHhcCC-CceEEEEeeeec---HHHHHHHhcCCceEeecCCCCc--eeEEeccCCchhhHHHHHHHHHHHHccCCCCC
Confidence 44444433 568999999998 5677788888777766533222 344444322222 2344555555567889
Q ss_pred EEEEeCchHHHHHHHHHHHhc----C--c--eEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccC
Q psy13287 79 SIIFCNSTQRVELLAKKITEL----G--Y--CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSS 137 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~----~--~--~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~ 137 (140)
+|||.+..++.+.+++.|.+. + + -+..+||.++.+++..+++.-..|.-+|+++||+++
T Consensus 261 ILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAE 327 (674)
T KOG0922|consen 261 ILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAE 327 (674)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceee
Confidence 999999999999999999875 1 1 257899999999999999999999999999999986
No 104
>KOG0948|consensus
Probab=98.80 E-value=2.5e-08 Score=77.68 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=57.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc---------------------------------------CceEEEEecCCCHHHH
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL---------------------------------------GYCCYYIHARMAQAHR 115 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~---------------------------------------~~~v~~~h~~~~~~~R 115 (140)
+..|+|||+-|+++||..|..+.+. .-.++.+|||+-+.-+
T Consensus 382 ~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlK 461 (1041)
T KOG0948|consen 382 NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILK 461 (1041)
T ss_pred cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHH
Confidence 4568999999999999998877541 1137899999999999
Q ss_pred HHHHHHhhcCCccEEEEecccCCCC
Q psy13287 116 NRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 116 ~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+.+.=-|++|=+++|+||..+|.||
T Consensus 462 E~IEILFqEGLvKvLFATETFsiGL 486 (1041)
T KOG0948|consen 462 EVIEILFQEGLVKVLFATETFSIGL 486 (1041)
T ss_pred HHHHHHHhccHHHHHHhhhhhhhcc
Confidence 9999999999999999999999996
No 105
>KOG0947|consensus
Probab=98.73 E-value=1.7e-07 Score=74.71 Aligned_cols=72 Identities=18% Similarity=0.165 Sum_probs=61.0
Q ss_pred HHHhhCCCCcEEEEeCchHHHHHHHHHHHhc---------------------------------------CceEEEEecC
Q psy13287 69 TLFSKLQINQSIIFCNSTQRVELLAKKITEL---------------------------------------GYCCYYIHAR 109 (140)
Q Consensus 69 ~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~---------------------------------------~~~v~~~h~~ 109 (140)
..|+..+.-|++|||=|++.|++-+++|+.. .-.++.+||+
T Consensus 560 n~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~G 639 (1248)
T KOG0947|consen 560 NHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGG 639 (1248)
T ss_pred HHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhccc
Confidence 3334445568999999999999999999641 1137899999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 110 MAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 110 ~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+-+..++-+.--|+.|=++||+||..+|+|+
T Consensus 640 lLPivKE~VE~LFqrGlVKVLFATETFAMGV 670 (1248)
T KOG0947|consen 640 LLPIVKEVVELLFQRGLVKVLFATETFAMGV 670 (1248)
T ss_pred chHHHHHHHHHHHhcCceEEEeehhhhhhhc
Confidence 9999999999999999999999999999996
No 106
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.73 E-value=7e-08 Score=77.26 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=86.9
Q ss_pred CCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCc---hH
Q psy13287 12 ERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNS---TQ 87 (140)
Q Consensus 12 ~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t---~~ 87 (140)
..+.+..|||..+.-. .-.++++-.-+.++ ......||.+.++.. .-.+.+.++++.+..+ +|||++. ++
T Consensus 276 ~g~LvvsSATg~~rg~--R~~LfReLlgFevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG~G-gLIfV~~d~G~e 349 (1187)
T COG1110 276 LGILVVSSATGKPRGS--RLKLFRELLGFEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLGDG-GLIFVPIDYGRE 349 (1187)
T ss_pred CceEEEeeccCCCCCc--hHHHHHHHhCCccCccchhhhheeeeeccC---ccHHHHHHHHHHhCCC-eEEEEEcHHhHH
Confidence 4678999999987632 11123332334444 345667787777654 5556667777776554 8999999 99
Q ss_pred HHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec----ccCCCC
Q psy13287 88 RVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG----DSSAMM 140 (140)
Q Consensus 88 ~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~----~~~rGl 140 (140)
.+++++++|+..|+++..+|++- .+.+++|..|++++||... .+-||+
T Consensus 350 ~aeel~e~Lr~~Gi~a~~~~a~~-----~~~le~F~~GeidvLVGvAsyYG~lVRGl 401 (1187)
T COG1110 350 KAEELAEYLRSHGINAELIHAEK-----EEALEDFEEGEVDVLVGVASYYGVLVRGL 401 (1187)
T ss_pred HHHHHHHHHHhcCceEEEeeccc-----hhhhhhhccCceeEEEEecccccceeecC
Confidence 99999999999999999999952 5789999999999999864 445554
No 107
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.71 E-value=2.9e-07 Score=74.43 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=52.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.++++||||+|.+..+.+++.|... ++. .+..+.+ ..|..++++|++|+..+|+||+.+++|+
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGV 739 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGV 739 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeeccc
Confidence 4689999999999999999999752 333 3334433 5789999999999999999999999996
No 108
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.63 E-value=3.2e-07 Score=69.21 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=65.8
Q ss_pred HHHHHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 64 VHCLNTLFSKL-QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 64 ~~~l~~ll~~~-~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
...+..++... ...+++|||.+...++.++..|...+. +..+.|+.+.++|..+++.|+.|++++||++.++..|+
T Consensus 270 ~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGv 346 (442)
T COG1061 270 IAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGV 346 (442)
T ss_pred HHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeecccee
Confidence 34444444433 367899999999999999999998887 99999999999999999999999999999999998884
No 109
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.57 E-value=3.8e-07 Score=74.41 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=71.6
Q ss_pred CccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC---CccEEEEe
Q psy13287 59 QERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG---LCRNLVCS 133 (140)
Q Consensus 59 ~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g---~~~vlv~T 133 (140)
..+.|+..|.++|..+ ...++|||++.......+..+|...|+++..++|+++..+|..+++.|... ..-+|++|
T Consensus 468 e~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLST 547 (1033)
T PLN03142 468 ENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLST 547 (1033)
T ss_pred hhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEec
Confidence 3567888899988776 456899999999999999999999999999999999999999999999753 23568999
Q ss_pred cccCCCC
Q psy13287 134 GDSSAMM 140 (140)
Q Consensus 134 ~~~~rGl 140 (140)
.+++.||
T Consensus 548 rAGGlGI 554 (1033)
T PLN03142 548 RAGGLGI 554 (1033)
T ss_pred cccccCC
Confidence 9999996
No 110
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.55 E-value=1.9e-06 Score=69.90 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=56.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh----------------------------cCc-------------eEEEEecCCCHH
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITE----------------------------LGY-------------CCYYIHARMAQA 113 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~----------------------------~~~-------------~v~~~h~~~~~~ 113 (140)
+..++|+|+=|++.|+..+..+.. .++ .++++|+++=+.
T Consensus 378 ~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~ 457 (1041)
T COG4581 378 NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPA 457 (1041)
T ss_pred cCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchH
Confidence 456899999999999988887752 011 157899999999
Q ss_pred HHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 114 HRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 114 ~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.|..+.+-|..|-++++++|..+|.|+
T Consensus 458 ~K~~vE~Lfq~GLvkvvFaTeT~s~Gi 484 (1041)
T COG4581 458 IKELVEELFQEGLVKVVFATETFAIGI 484 (1041)
T ss_pred HHHHHHHHHhccceeEEeehhhhhhhc
Confidence 999999999999999999999999985
No 111
>KOG4150|consensus
Probab=98.48 E-value=1.3e-06 Score=66.87 Aligned_cols=127 Identities=11% Similarity=0.118 Sum_probs=90.4
Q ss_pred CCCeEEEEEecCchhHHHHHHHhcc-CCc-EEEcCCcccCCCeEEEEEEcCcc---------chHHHHHHHHhhC--CCC
Q psy13287 11 HERQILLYSATFPLTVKNFMEKHLK-DPY-EINLMEELTLKGVTQYYAFVQER---------QKVHCLNTLFSKL--QIN 77 (140)
Q Consensus 11 ~~~q~v~~SAT~~~~~~~~~~~~~~-~~~-~i~~~~~~~~~~i~~~~~~~~~~---------~k~~~l~~ll~~~--~~~ 77 (140)
.+-|++--|||+...++.. +.+++ +.. .++. +..+..-.+.++|.++. .++.....++... .+-
T Consensus 450 ~~~~~~~~~~~~K~~~~~~-~~~~~~~E~~Li~~--DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~ 526 (1034)
T KOG4150|consen 450 INMGVYDGDTPYKDRTRLR-SELANLSELELVTI--DGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGL 526 (1034)
T ss_pred cCcceEeCCCCcCCHHHHH-HHhcCCcceEEEEe--cCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCC
Confidence 3678999999998887644 44444 322 3333 23344557777776521 2233333333332 467
Q ss_pred cEEEEeCchHHHHHHHHHHHhc----C----ceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 78 QSIIFCNSTQRVELLAKKITEL----G----YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L~~~----~----~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++|-||.+++-||-+...-++. + -.+..|.|+-..++|.++..++-.|++..+|+|++++.|+
T Consensus 527 R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGI 597 (1034)
T KOG4150|consen 527 RCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGI 597 (1034)
T ss_pred cEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhcc
Confidence 9999999999999876665543 2 2478899999999999999999999999999999999986
No 112
>KOG0953|consensus
Probab=98.46 E-value=1e-06 Score=66.89 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=66.0
Q ss_pred HHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCCCHHHHHHHHHHhhc--CCccEEEEecccCCCC
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMAQAHRNRVFHDFRS--GLCRNLVCSGDSSAMM 140 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~~~~~R~~~~~~f~~--g~~~vlv~T~~~~rGl 140 (140)
.+.+..-++++.++.++|-+ |+++.-.+...+.+.+. +|+.++|+++++.|..--..|.+ ++++||||||+.+|||
T Consensus 345 ~~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGL 423 (700)
T KOG0953|consen 345 EETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGL 423 (700)
T ss_pred hhhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccc
Confidence 34566667777888888844 79999999999988865 59999999999999999999987 8999999999999996
No 113
>KOG0923|consensus
Probab=98.34 E-value=1.3e-05 Score=62.24 Aligned_cols=131 Identities=13% Similarity=0.217 Sum_probs=94.2
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHH-HHH---hhCCCC
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLN-TLF---SKLQIN 77 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~-~ll---~~~~~~ 77 (140)
+++|.+.- ++...++.|||+. .+....+|.+...+.+.. . .-.+..+|...++.+=++.-. .++ -..+.+
T Consensus 401 vKDIar~R-pdLKllIsSAT~D---AekFS~fFDdapIF~iPG-R-RyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~G 474 (902)
T KOG0923|consen 401 VKDIARFR-PDLKLLISSATMD---AEKFSAFFDDAPIFRIPG-R-RYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLG 474 (902)
T ss_pred HHHHHhhC-CcceEEeeccccC---HHHHHHhccCCcEEeccC-c-ccceeeecccCCchhHHHHHHhhheeeEeccCCc
Confidence 34555544 4788999999997 556777888766665532 2 223566666665554443322 222 222568
Q ss_pred cEEEEeCchHHHHHHHHHHHhc----C-----ceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCC
Q psy13287 78 QSIIFCNSTQRVELLAKKITEL----G-----YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSA 138 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L~~~----~-----~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~r 138 (140)
.+|||..-.++.+...+.|.+. | +-+..+|+.++.+.+..+++---.|--+|++|||+++-
T Consensus 475 DILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAET 544 (902)
T KOG0923|consen 475 DILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAET 544 (902)
T ss_pred cEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhh
Confidence 8999999999988888877553 2 23889999999999999999999999999999999863
No 114
>KOG0920|consensus
Probab=98.34 E-value=6.2e-06 Score=66.37 Aligned_cols=126 Identities=10% Similarity=0.134 Sum_probs=90.2
Q ss_pred CCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcc-----------------cCCCeEEE------------EEEcCcc
Q psy13287 11 HERQILLYSATFPLTVKNFMEKHLKDPYEINLMEEL-----------------TLKGVTQY------------YAFVQER 61 (140)
Q Consensus 11 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~-----------------~~~~i~~~------------~~~~~~~ 61 (140)
++.+++++|||+. .+....+|+.+..+++.... ......++ ....+.+
T Consensus 318 p~LkvILMSAT~d---ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (924)
T KOG0920|consen 318 PDLKVILMSATLD---AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPE 394 (924)
T ss_pred CCceEEEeeeecc---hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcccc
Confidence 5789999999998 55677788876666554210 01111111 0001122
Q ss_pred chHHHHHHHHhhC----CCCcEEEEeCchHHHHHHHHHHHhc-------CceEEEEecCCCHHHHHHHHHHhhcCCccEE
Q psy13287 62 QKVHCLNTLFSKL----QINQSIIFCNSTQRVELLAKKITEL-------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNL 130 (140)
Q Consensus 62 ~k~~~l~~ll~~~----~~~~~lIF~~t~~~~~~~~~~L~~~-------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vl 130 (140)
-..+.+..++... .++.+|||.+.-.+...+++.|... ++-+..+|+.|+..++..++..--.|.-+|+
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKII 474 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKII 474 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhh
Confidence 3455555555444 3678999999999999999999643 3568999999999999999999999999999
Q ss_pred EEecccCCC
Q psy13287 131 VCSGDSSAM 139 (140)
Q Consensus 131 v~T~~~~rG 139 (140)
++|++|+-.
T Consensus 475 laTNIAETS 483 (924)
T KOG0920|consen 475 LATNIAETS 483 (924)
T ss_pred hhhhhHhhc
Confidence 999998754
No 115
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.33 E-value=4.3e-06 Score=69.24 Aligned_cols=64 Identities=9% Similarity=0.209 Sum_probs=53.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc------Cc---eEEEEecCCCHHHHHHHHHHhhcCCc-cEEEEecccCCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL------GY---CCYYIHARMAQAHRNRVFHDFRSGLC-RNLVCSGDSSAMM 140 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~------~~---~v~~~h~~~~~~~R~~~~~~f~~g~~-~vlv~T~~~~rGl 140 (140)
.++++||||.+++.|+.+++.|++. ++ .+..+||+.+ ++..++++|++++. +|+|++|+++.|+
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~ 770 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGI 770 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCC
Confidence 4579999999999999999888653 22 4667999975 56789999999987 6899999999995
No 116
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.24 E-value=0.00014 Score=54.63 Aligned_cols=122 Identities=13% Similarity=0.180 Sum_probs=93.7
Q ss_pred CeEEEEEecCchhHHHHHHHhccCCc---EEEcC-C-----cccCCCeEEEEEEcCcc-------chHHHHHH-HH---h
Q psy13287 13 RQILLYSATFPLTVKNFMEKHLKDPY---EINLM-E-----ELTLKGVTQYYAFVQER-------QKVHCLNT-LF---S 72 (140)
Q Consensus 13 ~q~v~~SAT~~~~~~~~~~~~~~~~~---~i~~~-~-----~~~~~~i~~~~~~~~~~-------~k~~~l~~-ll---~ 72 (140)
+|++++|+...+.+..+....+.|.. .+... . ......+.|.+..++.+ .+.+...+ ++ .
T Consensus 216 RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~ 295 (442)
T PF06862_consen 216 RQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLK 295 (442)
T ss_pred eEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhh
Confidence 79999999999999999988776532 22111 2 24567788888876522 23222222 22 2
Q ss_pred -hCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 73 -KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 73 -~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
....+.+|||++|--+=-.+-++|++.++.++.+|--.+..+-...-..|.+|+.++|+.|.
T Consensus 296 ~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TE 358 (442)
T PF06862_consen 296 RDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTE 358 (442)
T ss_pred hccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEh
Confidence 33457899999999999999999999999999999999999989999999999999999995
No 117
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.22 E-value=2e-05 Score=63.15 Aligned_cols=121 Identities=8% Similarity=0.009 Sum_probs=76.3
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEE-EEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQY-YAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVE 90 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~-~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~ 90 (140)
....+|.|.-....++.+.+ +-..+.+.++.+.....+- .++.....|...+.+-+... ...|+||.|.|.+..|
T Consensus 363 kLsGMTGTA~te~~Ef~~iY--~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE 440 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIY--NMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSE 440 (925)
T ss_pred hhhccCCCCHHHHHHHHHHh--CCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 35667888765444433322 2223434322211111111 23345566776666655433 4678999999999999
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC-CccEEEEecccCCC
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG-LCRNLVCSGDSSAM 139 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~vlv~T~~~~rG 139 (140)
.+++.|.+.|++...+++.....+-..+- +.| .-.|.|||+.|+||
T Consensus 441 ~ls~~L~~~gi~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRG 487 (925)
T PRK12903 441 TLHELLLEANIPHTVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRG 487 (925)
T ss_pred HHHHHHHHCCCCceeecccchhhHHHHHH---hCCCCCeEEEecccccCC
Confidence 99999999999999999974433333222 345 34799999999999
No 118
>KOG0924|consensus
Probab=98.16 E-value=9.9e-06 Score=63.21 Aligned_cols=123 Identities=12% Similarity=0.193 Sum_probs=86.4
Q ss_pred CCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchH-HHHHHHHhhC---CCCcEEEEeCch
Q psy13287 11 HERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKV-HCLNTLFSKL---QINQSIIFCNST 86 (140)
Q Consensus 11 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~-~~l~~ll~~~---~~~~~lIF~~t~ 86 (140)
.+..++..|||+. .+....+|++...+.+....-+-.+ .+...+-++=+ ..+.+.+.-. +++..|||..-.
T Consensus 499 rdlKliVtSATm~---a~kf~nfFgn~p~f~IpGRTyPV~~--~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGq 573 (1042)
T KOG0924|consen 499 RDLKLIVTSATMD---AQKFSNFFGNCPQFTIPGRTYPVEI--MYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQ 573 (1042)
T ss_pred ccceEEEeecccc---HHHHHHHhCCCceeeecCCccceEE--EeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCC
Confidence 3678999999998 4566778887777766543333333 33333333322 2233333211 457899999888
Q ss_pred HHHHHHHHHHHh----c------CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCC
Q psy13287 87 QRVELLAKKITE----L------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSA 138 (140)
Q Consensus 87 ~~~~~~~~~L~~----~------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~r 138 (140)
++.|..+..+.. . +..|..+++.++.+-+.+++++-..|.-+++|+|++++-
T Consensus 574 ediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAET 635 (1042)
T KOG0924|consen 574 EDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAET 635 (1042)
T ss_pred cchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhh
Confidence 877766665543 2 567999999999999999999999999999999999863
No 119
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.14 E-value=3.4e-05 Score=60.94 Aligned_cols=121 Identities=7% Similarity=-0.002 Sum_probs=77.7
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCccc--CCCeEEEEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELT--LKGVTQYYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRV 89 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~ 89 (140)
..-.+|.|......++.+.+--+ .+.+.+..+ ...... .++....+|...+.+-+... ...|+||.|.|.+..
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY~l~--Vv~IPtnkp~~R~d~~d-~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~S 440 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFYDLG--VSVIPPNKPNIREDEAD-RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAES 440 (764)
T ss_pred hheeecCCChhHHHHHHHHhCCc--EEECCCCCCceeecCCC-ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 46778999876655444333222 333332211 111111 23334556776666655433 567899999999999
Q ss_pred HHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCC
Q psy13287 90 ELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAM 139 (140)
Q Consensus 90 ~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rG 139 (140)
|.+++.|.+.|+++..+++.-..++-..+-+.=+.| .|-|||+.|+||
T Consensus 441 E~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRG 488 (764)
T PRK12326 441 EELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRG 488 (764)
T ss_pred HHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCc
Confidence 999999999999999999985544433333322333 789999999999
No 120
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.00 E-value=0.00011 Score=59.62 Aligned_cols=63 Identities=10% Similarity=0.092 Sum_probs=50.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+++++|+++|.+..+.+++.|+...+.+ ...|.-. .|..++++|++++-.||++|+-+..|+
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGV 708 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGV 708 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCC
Confidence 47899999999999999999998765555 4445322 356789999998889999998888775
No 121
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.95 E-value=0.00015 Score=59.56 Aligned_cols=66 Identities=8% Similarity=0.017 Sum_probs=51.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCc--eEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGY--CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~--~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.++++|||++|.+..+.+++.|..... ....+.-+++...|..++++|+.++-.||++|.-+..|+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGV 818 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGI 818 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCcc
Confidence 467999999999999999999976422 122333344445688999999998888999999888885
No 122
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.89 E-value=7e-05 Score=60.42 Aligned_cols=121 Identities=8% Similarity=0.017 Sum_probs=77.9
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCcc--cCCCeEEEEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEEL--TLKGVTQYYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRV 89 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~ 89 (140)
..-.+|.|......++.+.+--+ .+.+.++. ........ ++....+|...+.+-+... ...|+||-|.|.+..
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~l~--Vv~IPTnkP~~R~D~~d~-vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~S 462 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYGLD--VVVIPPNKPLARKDFNDL-VYLTAEEKYAAIITDIKECMALGRPVLVGTATIETS 462 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhCCC--EEECCCCCCcccccCCCe-EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHH
Confidence 35668888865544433333222 33343222 12222222 3445567777776666544 467899999999999
Q ss_pred HHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCC
Q psy13287 90 ELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAM 139 (140)
Q Consensus 90 ~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rG 139 (140)
|.+++.|.+.|++...+++.....+-..+-+.=+ .-.|-|||+.|+||
T Consensus 463 E~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~--~GaVTIATNMAGRG 510 (913)
T PRK13103 463 EHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGR--PGALTIATNMAGRG 510 (913)
T ss_pred HHHHHHHHHcCCcHHHhccccchhHHHHHHcCCC--CCcEEEeccCCCCC
Confidence 9999999999999888888755444333333222 34799999999999
No 123
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.85 E-value=0.00033 Score=56.44 Aligned_cols=122 Identities=11% Similarity=0.030 Sum_probs=75.1
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEE-EEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ-YYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVE 90 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~ 90 (140)
.+..+|.|....-.++. ... +-..+.+.+..+.....+ -.++....+|...+.+-+... ...|+||-|.|.+..|
T Consensus 361 kL~GMTGTa~te~~Ef~-~iY-~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE 438 (870)
T CHL00122 361 KLSGMTGTAKTEELEFE-KIY-NLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSE 438 (870)
T ss_pred hhcccCCCCHHHHHHHH-HHh-CCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHH
Confidence 46778888865433332 222 222343433322222222 123334556666555544322 4678999999999999
Q ss_pred HHHHHHHhcCceEEEEecCC--CHHHHHHHHHHhhcCCccEEEEecccCCC
Q psy13287 91 LLAKKITELGYCCYYIHARM--AQAHRNRVFHDFRSGLCRNLVCSGDSSAM 139 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~--~~~~R~~~~~~f~~g~~~vlv~T~~~~rG 139 (140)
.+++.|.+.|++...+++.- ...|-..+-+.=+. -.|-|||+.|+||
T Consensus 439 ~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~~--G~VTIATNMAGRG 487 (870)
T CHL00122 439 LLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRK--GSITIATNMAGRG 487 (870)
T ss_pred HHHHHHHHcCCccceeeCCCccchhHHHHHHhcCCC--CcEEEeccccCCC
Confidence 99999999999999999973 23333333332222 4799999999999
No 124
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.84 E-value=0.00015 Score=58.82 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=77.3
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEE-EEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ-YYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVE 90 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~ 90 (140)
....+|.|.-....++.+ ..+ -..+.+.+..+.....+ -.++.....|...+.+-+... ...|+||-|.|.+..|
T Consensus 505 kl~GmTGTa~~e~~Ef~~-iY~-l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se 582 (970)
T PRK12899 505 KLAGMTGTAITESREFKE-IYN-LYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSE 582 (970)
T ss_pred hhcccCCCCHHHHHHHHH-HhC-CCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 567788888655443322 222 22333432221111111 123444556766666555433 4568999999999999
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCC
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAM 139 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rG 139 (140)
.++..|.+.|++...+++.-...+-..+-+.=+. -.|.|||+.++||
T Consensus 583 ~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~~--g~VTIATNmAGRG 629 (970)
T PRK12899 583 KLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKL--GAVTVATNMAGRG 629 (970)
T ss_pred HHHHHHHHcCCcceecccchhhhHHHHHHhcCCC--CcEEEeeccccCC
Confidence 9999999999999999998554444444333333 4799999999999
No 125
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.83 E-value=0.00018 Score=56.91 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=65.9
Q ss_pred ccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhc-C-ceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 60 ERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITEL-G-YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~-~-~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
++.|.+.+.+++... ..+++||-++..+.+..+.+.|+.. + ..++.+|+++++.+|...+.+.++|+.+|+|.|=
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 567888887777654 4678999999999999999999876 5 6799999999999999999999999999999985
No 126
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.76 E-value=0.00029 Score=56.93 Aligned_cols=122 Identities=11% Similarity=0.028 Sum_probs=75.2
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEE-EEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ-YYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVE 90 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~ 90 (140)
..-.+|.|.-....++.+.+ +-..+.+.++.+.....+ -.++.....|...+.+-+... ...|+||-|.|.+..|
T Consensus 376 kLsGMTGTa~te~~Ef~~iY--~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE 453 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTY--KLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSE 453 (939)
T ss_pred hhcccCCCCHHHHHHHHHHh--CCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHH
Confidence 45668888765444333333 222333332221111111 112334456766666555433 4678999999999999
Q ss_pred HHHHHHHhcCceEEEEecC-CC-HHHHHHHHHHhhcCCccEEEEecccCCC
Q psy13287 91 LLAKKITELGYCCYYIHAR-MA-QAHRNRVFHDFRSGLCRNLVCSGDSSAM 139 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~-~~-~~~R~~~~~~f~~g~~~vlv~T~~~~rG 139 (140)
.+++.|.+.|+++..+++. .. ..+-..+-+.=+. -.|-|||+.|+||
T Consensus 454 ~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~--GaVTIATNMAGRG 502 (939)
T PRK12902 454 LLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRK--GAVTIATNMAGRG 502 (939)
T ss_pred HHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCCC--CcEEEeccCCCCC
Confidence 9999999999999999997 22 3333333332223 3789999999999
No 127
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.76 E-value=0.00023 Score=58.19 Aligned_cols=121 Identities=12% Similarity=0.083 Sum_probs=79.3
Q ss_pred EEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEE-EEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHHH
Q psy13287 15 ILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ-YYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVEL 91 (140)
Q Consensus 15 ~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~ 91 (140)
.-.+|.|......++...+--+ .+.+.++.+.....+ -.++....+|...+.+-+... ...|+||-|.|.+..|.
T Consensus 566 LsGMTGTA~tea~Ef~~IY~L~--Vv~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~ 643 (1112)
T PRK12901 566 LAGMTGTAETEAGEFWDIYKLD--VVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISEL 643 (1112)
T ss_pred hcccCCCCHHHHHHHHHHhCCC--EEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHH
Confidence 4567788765544443333222 343433222111111 123345567777776666544 56789999999999999
Q ss_pred HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCC
Q psy13287 92 LAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAM 139 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rG 139 (140)
+++.|+..|++...+++.....+-..+-+.=+.| .|-|||+.|+||
T Consensus 644 lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRG 689 (1112)
T PRK12901 644 LSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRG 689 (1112)
T ss_pred HHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCC
Confidence 9999999999988888886655555554544444 789999999999
No 128
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.76 E-value=0.00043 Score=54.81 Aligned_cols=63 Identities=11% Similarity=0.105 Sum_probs=49.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCCHHHHHHHHHHhhcCCc-cEEEEecccCCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQAHRNRVFHDFRSGLC-RNLVCSGDSSAMM 140 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~~~~R~~~~~~f~~g~~-~vlv~T~~~~rGl 140 (140)
.++.+|||++|.+.++.+++.+...... ....+|..+ +...++.|+.+.- -++|+|.-++.|+
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGV 542 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGV 542 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcc
Confidence 4668999999999999999999887653 344455444 4488888987544 8999999999985
No 129
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.74 E-value=0.00031 Score=54.06 Aligned_cols=73 Identities=7% Similarity=0.133 Sum_probs=60.2
Q ss_pred chHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhc-CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 62 QKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITEL-GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 62 ~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
-|......++... ..+++|+-++++.-+..+++.|++. +.++..+||+++..+|...+.+..+|+.+|+|+|.
T Consensus 9 GKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTr 84 (505)
T TIGR00595 9 GKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTR 84 (505)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECCh
Confidence 4544444433322 3568999999999999999999875 77899999999999999999999999999999996
No 130
>KOG0925|consensus
Probab=97.73 E-value=0.00097 Score=50.68 Aligned_cols=124 Identities=15% Similarity=0.200 Sum_probs=82.7
Q ss_pred HHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHH----HHHHHhhCCCCc
Q psy13287 3 DHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHC----LNTLFSKLQINQ 78 (140)
Q Consensus 3 ~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~----l~~ll~~~~~~~ 78 (140)
++++..-| +..++.+|||+- ....+.+++++..+++.. ..+ ++.+|..-.+.+-++. +.++-....++.
T Consensus 183 k~v~~~rp-dLk~vvmSatl~---a~Kfq~yf~n~Pll~vpg-~~P--vEi~Yt~e~erDylEaairtV~qih~~ee~GD 255 (699)
T KOG0925|consen 183 KEVVRNRP-DLKLVVMSATLD---AEKFQRYFGNAPLLAVPG-THP--VEIFYTPEPERDYLEAAIRTVLQIHMCEEPGD 255 (699)
T ss_pred HHHHhhCC-CceEEEeecccc---hHHHHHHhCCCCeeecCC-CCc--eEEEecCCCChhHHHHHHHHHHHHHhccCCCC
Confidence 44444443 788999999986 557788999988888854 222 3334433334444433 333334446889
Q ss_pred EEEEeCchHHHHHHHHHHHhc---------CceEEEEecCCCHHHHHHHHHHhhc---C--CccEEEEecccC
Q psy13287 79 SIIFCNSTQRVELLAKKITEL---------GYCCYYIHARMAQAHRNRVFHDFRS---G--LCRNLVCSGDSS 137 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~---------~~~v~~~h~~~~~~~R~~~~~~f~~---g--~~~vlv~T~~~~ 137 (140)
+++|....++.++.++.+... ..+|..+| +.+++.+++-... | .-+|+|+|+++.
T Consensus 256 ilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniae 324 (699)
T KOG0925|consen 256 ILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAE 324 (699)
T ss_pred EEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchh
Confidence 999999999999999988743 24688888 4445555554432 2 247999999875
No 131
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.69 E-value=0.00042 Score=55.19 Aligned_cols=75 Identities=9% Similarity=0.156 Sum_probs=61.6
Q ss_pred ccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhc-CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 60 ERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITEL-GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
++-|......++... ...++||.+++++-+..+++.|++. +.++..+||+++..+|...+.+..+|+.+|+|+|.
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTr 249 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGAR 249 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecc
Confidence 344655444433221 3568999999999999999999875 88999999999999999999999999999999996
No 132
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.00019 Score=57.09 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=67.8
Q ss_pred cCccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhc-CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 58 VQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITEL-GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 58 ~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+-++-|.+.+.+++.+. ..+++||-++..+....+.+.|+.. |.+++.+|+++++.+|...+.+.+.|+.+|+|.|=
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 35677888888877655 4678999999999999999999876 88999999999999999999999999999999884
No 133
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.64 E-value=0.002 Score=51.60 Aligned_cols=62 Identities=11% Similarity=0.163 Sum_probs=46.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc-CceEEEEecCCCHHHHHHHHHHhhc----CCccEEEEecccCCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL-GYCCYYIHARMAQAHRNRVFHDFRS----GLCRNLVCSGDSSAMM 140 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~-~~~v~~~h~~~~~~~R~~~~~~f~~----g~~~vlv~T~~~~rGl 140 (140)
.++.+|||++|.+..+.+++.|... +..+ ..+|. ..|..+++.|++ |+-.||++|.-+..|+
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~l-l~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGV 599 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLML-LVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGL 599 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcE-EEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccc
Confidence 3556899999999999999999743 4443 44554 356788877774 6678999998888875
No 134
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.61 E-value=0.0022 Score=50.60 Aligned_cols=71 Identities=8% Similarity=0.123 Sum_probs=51.7
Q ss_pred HHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc----CCccEEEEecccCCCC
Q psy13287 67 LNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS----GLCRNLVCSGDSSAMM 140 (140)
Q Consensus 67 l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~----g~~~vlv~T~~~~rGl 140 (140)
+..++.. ..++++|-+.|.+.++.+++.|+..---...+.|+.+ .|...+++|+. |.-.||++|+-+-.|+
T Consensus 462 ~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 462 TAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred HHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 3344333 4778999999999999999999764212345666532 45678999987 4789999999887774
No 135
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.00064 Score=55.48 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=58.3
Q ss_pred HHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc----C-ceEEE-EecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL----G-YCCYY-IHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~----~-~~v~~-~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
...+..+.-....+++++-++|..-+..+++.|.+. + ..+.. |||.++.+++.+.+++|.+|..+|||+|+.+
T Consensus 113 fg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 113 FGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 444555554445688999999999999999988765 2 33322 9999999999999999999999999999843
No 136
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.50 E-value=0.00059 Score=54.37 Aligned_cols=61 Identities=11% Similarity=0.161 Sum_probs=55.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecc
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
...+++|-++|+.-|...++.+++. ++++..+||+++..+|..+++.+.+|+.+|+|+|..
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ 373 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHA 373 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHH
Confidence 4568999999999999888887764 689999999999999999999999999999999973
No 137
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.49 E-value=0.0037 Score=50.17 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=46.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCc------eEEEEecCCCHHHHHHHHHHhhc----CCccEEEEe--cccCCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGY------CCYYIHARMAQAHRNRVFHDFRS----GLCRNLVCS--GDSSAMM 140 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~------~v~~~h~~~~~~~R~~~~~~f~~----g~~~vlv~T--~~~~rGl 140 (140)
.++.+|||++|-...+.+++.+++.+. ....+.-+-+..++..++++|+. |+--+|+|+ .-++.|+
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGI 598 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGI 598 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcc
Confidence 467899999999999999998876532 11222222223678899999964 455699998 6677775
No 138
>KOG0392|consensus
Probab=97.45 E-value=0.0012 Score=54.95 Aligned_cols=82 Identities=16% Similarity=0.290 Sum_probs=65.1
Q ss_pred CccchHHHHHHHHhhC----------------CCCcEEEEeCchHHHHHHHHHHHhcCc-eE--EEEecCCCHHHHHHHH
Q psy13287 59 QERQKVHCLNTLFSKL----------------QINQSIIFCNSTQRVELLAKKITELGY-CC--YYIHARMAQAHRNRVF 119 (140)
Q Consensus 59 ~~~~k~~~l~~ll~~~----------------~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v--~~~h~~~~~~~R~~~~ 119 (140)
....|+..|.++|..= ...++||||+-+...+-+.+-|.+... .| .-+-|+.++..|.++.
T Consensus 1307 ~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV 1386 (1549)
T KOG0392|consen 1307 QHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIV 1386 (1549)
T ss_pred hhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHH
Confidence 4567999999998643 123789999999999999888866532 34 4789999999999999
Q ss_pred HHhhcC-CccEEEEec-ccCCCC
Q psy13287 120 HDFRSG-LCRNLVCSG-DSSAMM 140 (140)
Q Consensus 120 ~~f~~g-~~~vlv~T~-~~~rGl 140 (140)
++|.++ .+++|+-|+ +++.|+
T Consensus 1387 ~~FN~DptIDvLlLTThVGGLGL 1409 (1549)
T KOG0392|consen 1387 ERFNEDPTIDVLLLTTHVGGLGL 1409 (1549)
T ss_pred HHhcCCCceeEEEEeeecccccc
Confidence 999998 899876665 666664
No 139
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.0036 Score=50.09 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=43.2
Q ss_pred HHHHHHHHHhc--CceEEEEecCCCH--HHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 89 VELLAKKITEL--GYCCYYIHARMAQ--AHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 89 ~~~~~~~L~~~--~~~v~~~h~~~~~--~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+|++++.|.+. +.++..+-++... ..=...++.|.+|+.+|||.|..++-|+
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~ 548 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGH 548 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCC
Confidence 78888888876 7888888888654 3356789999999999999999998884
No 140
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=97.33 E-value=0.0013 Score=52.10 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=55.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecc
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
...++++-++|+.-|+.+++.+++. |+++..+||+++..+|...++...+|+.+++|+|..
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ 347 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHA 347 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHH
Confidence 3568999999999999998888764 789999999999999999999999999999999974
No 141
>PRK14701 reverse gyrase; Provisional
Probab=97.28 E-value=0.0025 Score=55.17 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=54.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc------CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+..+++|.++|++-+..+++.|+.. ++++.++||+++.+++...++.+++|+.+|+|+|+
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TP 186 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTA 186 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECC
Confidence 4568999999999999999999873 56789999999999999999999999999999998
No 142
>KOG1000|consensus
Probab=97.23 E-value=0.0014 Score=49.83 Aligned_cols=81 Identities=7% Similarity=0.117 Sum_probs=67.0
Q ss_pred ccchHHHHHHHHhh------CCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC-CccE-EE
Q psy13287 60 ERQKVHCLNTLFSK------LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG-LCRN-LV 131 (140)
Q Consensus 60 ~~~k~~~l~~ll~~------~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~v-lv 131 (140)
...|...+.+++.. .++.+.+|||......+.+..++.+.++...-+-|..+...|....++|+.. +++| ++
T Consensus 470 giaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvl 549 (689)
T KOG1000|consen 470 GIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVL 549 (689)
T ss_pred cccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEE
Confidence 34577778777755 1467899999999999999999999999999999999999999999999964 5665 55
Q ss_pred EecccCCCC
Q psy13287 132 CSGDSSAMM 140 (140)
Q Consensus 132 ~T~~~~rGl 140 (140)
+-++++.||
T Consensus 550 sItA~gvGL 558 (689)
T KOG1000|consen 550 SITAAGVGL 558 (689)
T ss_pred EEeecccce
Confidence 666677775
No 143
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.18 E-value=0.0012 Score=43.44 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=51.1
Q ss_pred HHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCc--eEEEEecCCCHHHHHHHHHHhhcCCccEEEEec--ccCCCC
Q psy13287 69 TLFSKLQINQSIIFCNSTQRVELLAKKITELGY--CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG--DSSAMM 140 (140)
Q Consensus 69 ~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~--~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~--~~~rGl 140 (140)
++++. .++.+|||++|.+..+.+.+.++.... ....+.. +...+..+++.|+.++--+|+++. -++.|+
T Consensus 3 ~l~~~-~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGi 75 (167)
T PF13307_consen 3 ELISA-VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGI 75 (167)
T ss_dssp HHHHC-CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS
T ss_pred HHHhc-CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEee
Confidence 44444 468899999999999999999987642 2223333 366788999999999999999997 666664
No 144
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0026 Score=49.20 Aligned_cols=52 Identities=12% Similarity=0.241 Sum_probs=43.9
Q ss_pred EEEEeCchHHHHHHHHHHHhc-----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 79 SIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~-----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+||.++|++-|..+++.++.. ++++..++|+++...+... ++.| .+|+|+|+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---l~~~-~~ivVaTP 158 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---LKRG-VDIVVATP 158 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---HhcC-CCEEEECc
Confidence 899999999999999988764 4678999999988776644 4446 99999999
No 145
>KOG0387|consensus
Probab=97.12 E-value=0.0034 Score=50.14 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=68.3
Q ss_pred ccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHH-hcCceEEEEecCCCHHHHHHHHHHhhcCC-ccE-EEEec
Q psy13287 60 ERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKIT-ELGYCCYYIHARMAQAHRNRVFHDFRSGL-CRN-LVCSG 134 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~-~~v-lv~T~ 134 (140)
..-|+..+.+++..- .+.++|+|..++....-+...|. ..||.+.-+-|..+...|..++++|.++. +.| |++|-
T Consensus 528 ~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTr 607 (923)
T KOG0387|consen 528 RSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTR 607 (923)
T ss_pred hcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEec
Confidence 345889999988644 46689999999999999988888 46999999999999999999999999765 455 77888
Q ss_pred ccCCCC
Q psy13287 135 DSSAMM 140 (140)
Q Consensus 135 ~~~rGl 140 (140)
+++.|+
T Consensus 608 vGGLGl 613 (923)
T KOG0387|consen 608 VGGLGL 613 (923)
T ss_pred cccccc
Confidence 888875
No 146
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.04 E-value=0.0067 Score=46.39 Aligned_cols=59 Identities=10% Similarity=0.201 Sum_probs=55.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+.+||.+++++-+++..+.|+..|+.+..++|+.+..++..++..+..|+.+++++|+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 57799999999999999999999999999999999999999999999999999999997
No 147
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.99 E-value=0.004 Score=51.31 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=54.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...+++|.++|+.-|+..++.+++. ++++..++|..+..++..+++.+++|+.+++|+|.
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp 562 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTH 562 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchH
Confidence 3578999999999999999988764 67899999999999999999999999999999997
No 148
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=96.91 E-value=0.0043 Score=52.33 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=52.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----Cce---EEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYC---CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~---v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...+++|.++|++-|..+++.+++. ++. +..+||+++..+|...++++++|..+|+|+|+
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp 186 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTT 186 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 3578999999999999999988765 333 34689999999999999999999999999998
No 149
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=96.82 E-value=0.0087 Score=47.07 Aligned_cols=60 Identities=7% Similarity=0.149 Sum_probs=55.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..+.++|.+++++-++...+.|+..|+.+..+||+++..++..+++.+..|..+++++|+
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 357789999999999999999999999999999999999999999999999999999986
No 150
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.81 E-value=0.014 Score=47.43 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=65.5
Q ss_pred chHHHHHHHH-hhC--CCC--cEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC-Ccc-EEEEec
Q psy13287 62 QKVHCLNTLF-SKL--QIN--QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG-LCR-NLVCSG 134 (140)
Q Consensus 62 ~k~~~l~~ll-~~~--~~~--~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~-vlv~T~ 134 (140)
.|...+.+++ ... ... ++++|++.....+-+...++..++....++|+++...|...+++|.++ ... .+++|-
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 6777887777 333 334 899999999999999999999999999999999999999999999986 344 466666
Q ss_pred ccCCCC
Q psy13287 135 DSSAMM 140 (140)
Q Consensus 135 ~~~rGl 140 (140)
.++.|+
T Consensus 772 agg~gl 777 (866)
T COG0553 772 AGGLGL 777 (866)
T ss_pred ccccce
Confidence 777775
No 151
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=96.79 E-value=0.014 Score=46.07 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=53.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHH----hcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 75 QINQSIIFCNSTQRVELLAKKIT----ELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~----~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
...|+.+-++|-=-|+..++.+. ..|++|+.+.|.+...+|.+++++..+|+++++|.|-++
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL 375 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL 375 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh
Confidence 56799999999777766665554 459999999999999999999999999999999999743
No 152
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=96.77 E-value=0.022 Score=38.25 Aligned_cols=56 Identities=13% Similarity=0.049 Sum_probs=44.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+..++||.|+++.-+...++.++.. ++.+..++|+.+..++...++ +..+++|||.
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~ 127 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATP 127 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEECh
Confidence 3457999999999999888877665 678899999988766544333 6789999996
No 153
>PRK10689 transcription-repair coupling factor; Provisional
Probab=96.75 E-value=0.0098 Score=50.15 Aligned_cols=60 Identities=7% Similarity=0.034 Sum_probs=54.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...+++|-++|+.-|..+++.+++. ++++..++|..+..++..+++.+++|+.+|+|+|.
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp 711 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTH 711 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECH
Confidence 4678999999999999999988753 56889999999999999999999999999999996
No 154
>KOG0385|consensus
Probab=96.72 E-value=0.014 Score=46.72 Aligned_cols=106 Identities=19% Similarity=0.247 Sum_probs=77.2
Q ss_pred HhccCCcEEEcCC-cccCCCeEEEEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEec
Q psy13287 32 KHLKDPYEINLME-ELTLKGVTQYYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHA 108 (140)
Q Consensus 32 ~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~ 108 (140)
+.+..|..+...+ +.....-.|. +.++-|+.+|.++|..+ ...++|||-+=.+..+-+..+..-.++...-+-|
T Consensus 443 KccnHPYLF~g~ePg~pyttdehL---v~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDG 519 (971)
T KOG0385|consen 443 KCCNHPYLFDGAEPGPPYTTDEHL---VTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDG 519 (971)
T ss_pred HhcCCccccCCCCCCCCCCcchHH---HhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecC
Confidence 3444565554432 2333333332 45667898999999877 4678999988777777666666666999999999
Q ss_pred CCCHHHHHHHHHHhhcCC---ccEEEEecccCCCC
Q psy13287 109 RMAQAHRNRVFHDFRSGL---CRNLVCSGDSSAMM 140 (140)
Q Consensus 109 ~~~~~~R~~~~~~f~~g~---~~vlv~T~~~~rGl 140 (140)
.++-++|...++.|.... .=.|++|=+++.||
T Consensus 520 St~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGI 554 (971)
T KOG0385|consen 520 STSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGI 554 (971)
T ss_pred CCCcHHHHHHHHhcCCCCcceEEEEEecccccccc
Confidence 999999999999998643 23488999888886
No 155
>KOG0389|consensus
Probab=96.65 E-value=0.016 Score=46.50 Aligned_cols=81 Identities=19% Similarity=0.301 Sum_probs=69.6
Q ss_pred ccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC-CccE-EEEecc
Q psy13287 60 ERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG-LCRN-LVCSGD 135 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~v-lv~T~~ 135 (140)
.+-|...|..+|.+. +..++|||-.-....+-+...|+..+++..-+-|...-.+|+.+++.|... .+.| |.+|-+
T Consensus 759 dSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKA 838 (941)
T KOG0389|consen 759 DSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKA 838 (941)
T ss_pred hhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeecc
Confidence 345888999999877 357999999988888888899999999999999999999999999999864 4555 888998
Q ss_pred cCCCC
Q psy13287 136 SSAMM 140 (140)
Q Consensus 136 ~~rGl 140 (140)
++.||
T Consensus 839 GG~GI 843 (941)
T KOG0389|consen 839 GGFGI 843 (941)
T ss_pred Cccee
Confidence 88885
No 156
>KOG0384|consensus
Probab=96.61 E-value=0.0036 Score=52.08 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=69.4
Q ss_pred ccchHHHHHHHHhhCC--CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC---CccEEEEec
Q psy13287 60 ERQKVHCLNTLFSKLQ--INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG---LCRNLVCSG 134 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~~--~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g---~~~vlv~T~ 134 (140)
.+-|+-.|-+||.++. ..++|||-+=++..+-++++|...+++.--+-|++..+.|+..++.|..- ..-.|.||=
T Consensus 681 sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTR 760 (1373)
T KOG0384|consen 681 SSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTR 760 (1373)
T ss_pred hcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecc
Confidence 4456666777777763 46899999999999999999999999999999999999999999999863 355799999
Q ss_pred ccCCCC
Q psy13287 135 DSSAMM 140 (140)
Q Consensus 135 ~~~rGl 140 (140)
+++.||
T Consensus 761 AGGLGI 766 (1373)
T KOG0384|consen 761 AGGLGI 766 (1373)
T ss_pred cCcccc
Confidence 888886
No 157
>KOG0347|consensus
Probab=96.61 E-value=0.0071 Score=46.76 Aligned_cols=52 Identities=8% Similarity=0.155 Sum_probs=46.9
Q ss_pred EEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 79 SIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+|||++|++-|-.+.+.|... +++++.+.||+..+.++.+++. .-+|+|||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 899999999999999999764 8999999999999888888886 558999998
No 158
>KOG0926|consensus
Probab=96.43 E-value=0.021 Score=46.18 Aligned_cols=83 Identities=17% Similarity=0.253 Sum_probs=50.4
Q ss_pred CeEEEEEecCchhHHHHH--HHhccC-CcEEEcCCcccCCCeEEEEEEcCccc---hHHHHHHHHhhCCCCcEEEEeCch
Q psy13287 13 RQILLYSATFPLTVKNFM--EKHLKD-PYEINLMEELTLKGVTQYYAFVQERQ---KVHCLNTLFSKLQINQSIIFCNST 86 (140)
Q Consensus 13 ~q~v~~SAT~~~~~~~~~--~~~~~~-~~~i~~~~~~~~~~i~~~~~~~~~~~---k~~~l~~ll~~~~~~~~lIF~~t~ 86 (140)
...|++|||+. +.++. +++|.. |..+.+...+-+-.|+ +-...+.+. -+.....+-++++++-+|||+.-.
T Consensus 415 LKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQfPVsIH-F~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQ 491 (1172)
T KOG0926|consen 415 LKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQFPVSIH-FNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQ 491 (1172)
T ss_pred eeEEEEeeeEE--ecccccCceecCCCCceeeeecccCceEEE-eccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeCh
Confidence 45799999986 33333 335543 3444443322222221 111122221 244455666777999999999999
Q ss_pred HHHHHHHHHHHh
Q psy13287 87 QRVELLAKKITE 98 (140)
Q Consensus 87 ~~~~~~~~~L~~ 98 (140)
.+++.+++.|++
T Consensus 492 qEV~qL~~kLRK 503 (1172)
T KOG0926|consen 492 QEVDQLCEKLRK 503 (1172)
T ss_pred HHHHHHHHHHHh
Confidence 999999999987
No 159
>KOG0388|consensus
Probab=96.43 E-value=0.01 Score=47.39 Aligned_cols=81 Identities=16% Similarity=0.298 Sum_probs=70.2
Q ss_pred ccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccE-EEEeccc
Q psy13287 60 ERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRN-LVCSGDS 136 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v-lv~T~~~ 136 (140)
++.|+..|..+|.++ .+.++|+|++-.+...-+.++|.-.++...-+-|+....+|..++.+|+..++-| |.+|-++
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 446778888888877 3568999999999999999999999999999999999999999999999977665 7888888
Q ss_pred CCCC
Q psy13287 137 SAMM 140 (140)
Q Consensus 137 ~rGl 140 (140)
+.|+
T Consensus 1106 GLGI 1109 (1185)
T KOG0388|consen 1106 GLGI 1109 (1185)
T ss_pred cccc
Confidence 8775
No 160
>KOG0389|consensus
Probab=96.38 E-value=0.037 Score=44.60 Aligned_cols=69 Identities=12% Similarity=0.040 Sum_probs=53.6
Q ss_pred HHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhcC--CccEEEEecccCC
Q psy13287 67 LNTLFSKLQINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSG--LCRNLVCSGDSSA 138 (140)
Q Consensus 67 l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g--~~~vlv~T~~~~r 138 (140)
|.-+.+...++|=||.|++ ++.+.|-.+|.++ ..+|..|||. +++|.++-..+..+ ..+|||+|--++-
T Consensus 439 layLkq~g~~gpHLVVvPs-STleNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~ 511 (941)
T KOG0389|consen 439 LAYLKQIGNPGPHLVVVPS-STLENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAA 511 (941)
T ss_pred HHHHHHcCCCCCcEEEecc-hhHHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeeccc
Confidence 3333334467888999984 5677777778777 7799999999 79999999999987 7899999975443
No 161
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=96.32 E-value=0.041 Score=43.54 Aligned_cols=59 Identities=8% Similarity=0.111 Sum_probs=55.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+.+||.+++++-+.+..+.|+..|+.+..++++.+.+++..+++.++.|+++++++|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 56899999999999999999999999999999999999999999999999999999986
No 162
>KOG1002|consensus
Probab=96.30 E-value=0.013 Score=44.89 Aligned_cols=71 Identities=23% Similarity=0.434 Sum_probs=58.4
Q ss_pred ccchHHHHHHHHhhC----CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC-CccEE
Q psy13287 60 ERQKVHCLNTLFSKL----QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG-LCRNL 130 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~----~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~vl 130 (140)
.+.|++.|.+-+... ..-+.|||.+-.+..+-+...|.+.|.+|.-+-|+|++..|...++.|++. .++|+
T Consensus 618 sSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vf 693 (791)
T KOG1002|consen 618 SSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVF 693 (791)
T ss_pred chhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEE
Confidence 345777777655433 345789999999999999999999999999999999999999999999975 56664
No 163
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=96.28 E-value=0.039 Score=42.06 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=44.0
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc-----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~-----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++||.|+|++-|..+++.++.. ++++..++|+.+...+...++ +..+|+|+|+
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp 131 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTP 131 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEECh
Confidence 36899999999999999888754 578999999998876554443 5689999996
No 164
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=96.26 E-value=0.041 Score=44.02 Aligned_cols=64 Identities=6% Similarity=-0.035 Sum_probs=49.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc-----CceEEEEecCCCHH---------------------HHHHHHHHhhc-CCcc
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQA---------------------HRNRVFHDFRS-GLCR 128 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~-----~~~v~~~h~~~~~~---------------------~R~~~~~~f~~-g~~~ 128 (140)
.++++|||.++..|..+++.|.+. +.....++++.+.+ ....++++|++ +.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 478999999999999999998765 23445666654332 23478899986 6899
Q ss_pred EEEEecccCCC
Q psy13287 129 NLVCSGDSSAM 139 (140)
Q Consensus 129 vlv~T~~~~rG 139 (140)
+||++|.+.-|
T Consensus 594 ilIVvdmllTG 604 (667)
T TIGR00348 594 LLIVVDMLLTG 604 (667)
T ss_pred EEEEEcccccc
Confidence 99999988877
No 165
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=96.13 E-value=0.063 Score=45.21 Aligned_cols=59 Identities=8% Similarity=0.075 Sum_probs=54.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vlv~T~ 134 (140)
.+.+||.+++++-+.+....|...|+++..++|+++..++..+++.+.. |+.++|++|+
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 5679999999999988778888889999999999999999999999987 8999999998
No 166
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.11 E-value=0.054 Score=43.08 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=43.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc-----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~-----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++||.|+|++-|..+++.+... ++.+..+||+.+.+.+...+ + +..+|+|+|+
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~-~~~~IVVgTP 133 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---R-QGPQIVVGTP 133 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---c-CCCCEEEECH
Confidence 3457999999999999998887653 67899999998876554433 2 4578999996
No 167
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.10 E-value=0.11 Score=33.63 Aligned_cols=56 Identities=13% Similarity=0.171 Sum_probs=44.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHH-HHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQA-HRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~-~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+..++++.++++.-++..++.+++. +.++..+||+.+.. +....+ .++.+++|+|.
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~ 103 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTP 103 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEH
T ss_pred CCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCc
Confidence 4458999999999999999988776 45789999998854 332333 67889999996
No 168
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.03 E-value=0.016 Score=46.83 Aligned_cols=79 Identities=13% Similarity=0.112 Sum_probs=58.9
Q ss_pred CccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 59 QERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 59 ~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
....|...+.+-+... .+.|+||-+.+.+..|.+.+.|++.|++...+.+.-..++=..+-+.=+.| -|-|||+.|
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMA 487 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMA 487 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhcCCCC--ccccccccc
Confidence 3445665555544333 578899999999999999999999999988888886655444444433334 678999999
Q ss_pred CCC
Q psy13287 137 SAM 139 (140)
Q Consensus 137 ~rG 139 (140)
+||
T Consensus 488 GRG 490 (822)
T COG0653 488 GRG 490 (822)
T ss_pred cCC
Confidence 998
No 169
>KOG0390|consensus
Probab=95.90 E-value=0.096 Score=42.40 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=52.0
Q ss_pred cchHHHHHHHHhhCCCCcEE---EEeCchHHHHHHHHHH-HhcCceEEEEecCCCHHHHHHHHHHhhcC--CccE-EEEe
Q psy13287 61 RQKVHCLNTLFSKLQINQSI---IFCNSTQRVELLAKKI-TELGYCCYYIHARMAQAHRNRVFHDFRSG--LCRN-LVCS 133 (140)
Q Consensus 61 ~~k~~~l~~ll~~~~~~~~l---IF~~t~~~~~~~~~~L-~~~~~~v~~~h~~~~~~~R~~~~~~f~~g--~~~v-lv~T 133 (140)
.-|+..|..++... ..+++ ++...-....++.+.+ +-.|+.+..+||+++..+|+.+++.|.+- ...| |.+|
T Consensus 577 s~kl~~L~~ll~~~-~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSs 655 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVI-REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSS 655 (776)
T ss_pred hhHHHHHHHHHHHH-hhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEec
Confidence 34566666666332 22333 3334444444454444 44499999999999999999999999863 3355 5666
Q ss_pred cccCCCC
Q psy13287 134 GDSSAMM 140 (140)
Q Consensus 134 ~~~~rGl 140 (140)
-+.+.||
T Consensus 656 KAgg~Gi 662 (776)
T KOG0390|consen 656 KAGGEGL 662 (776)
T ss_pred ccccCce
Confidence 6777775
No 170
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.78 E-value=0.053 Score=42.64 Aligned_cols=54 Identities=6% Similarity=0.138 Sum_probs=44.0
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++||.++|++-|..+++.+.+. ++++..+||+.+.+.+...++ +..+|+|+|+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~----~~~dIiV~TP 142 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ----QGVDVIIATP 142 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh----CCCCEEEECH
Confidence 57999999999999998887664 678999999998776554443 4679999996
No 171
>PRK09401 reverse gyrase; Reviewed
Probab=95.71 E-value=0.053 Score=46.05 Aligned_cols=60 Identities=18% Similarity=0.322 Sum_probs=49.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEE--EEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCY--YIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~--~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+..+++|.++|+.-+..+++.++.. +..+. ..|++++..++....+.++.|..+|+|+|+
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp 187 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTS 187 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECH
Confidence 4678999999999999999999876 33443 445566778888889999999999999997
No 172
>KOG1123|consensus
Probab=95.66 E-value=0.096 Score=40.51 Aligned_cols=73 Identities=16% Similarity=0.280 Sum_probs=51.7
Q ss_pred EEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC-CccEEEE
Q psy13287 56 AFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG-LCRNLVC 132 (140)
Q Consensus 56 ~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~vlv~ 132 (140)
.++-++.|...-.-+++.. .++++|||..+.=...+.|-.|.+ -+++|..++.+|..+++.|+-+ +++.++-
T Consensus 521 LyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 521 LYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred eeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEE
Confidence 3444556665544444332 578899999887777777666644 7899999999999999999854 4554444
Q ss_pred e
Q psy13287 133 S 133 (140)
Q Consensus 133 T 133 (140)
+
T Consensus 596 S 596 (776)
T KOG1123|consen 596 S 596 (776)
T ss_pred e
Confidence 3
No 173
>KOG0330|consensus
Probab=95.64 E-value=0.14 Score=38.34 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=51.0
Q ss_pred HHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+..|..++.+-+...++|-++|++-|..+++.+... |.+|..+-|+++......-+ + .+-.|+|||+
T Consensus 117 LPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L--~--kkPhilVaTP 187 (476)
T KOG0330|consen 117 LPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQL--S--KKPHILVATP 187 (476)
T ss_pred HHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHh--h--cCCCEEEeCc
Confidence 455666666545677999999999999999988766 77899999999865433222 2 4678999998
No 174
>KOG0391|consensus
Probab=95.64 E-value=0.082 Score=44.74 Aligned_cols=78 Identities=15% Similarity=0.277 Sum_probs=61.6
Q ss_pred chHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC-Ccc-EEEEecccC
Q psy13287 62 QKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG-LCR-NLVCSGDSS 137 (140)
Q Consensus 62 ~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~-vlv~T~~~~ 137 (140)
-|+..|+=+|+.+ ...++|||+.-.+..+-+.+.|+..|+...-+-|..+-++|+..+++|... ++- .+.+|--.+
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 4677777777666 367899999999999999999999999999999999999999999999753 343 355565333
Q ss_pred CC
Q psy13287 138 AM 139 (140)
Q Consensus 138 rG 139 (140)
.|
T Consensus 1340 vG 1341 (1958)
T KOG0391|consen 1340 VG 1341 (1958)
T ss_pred cc
Confidence 33
No 175
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=95.57 E-value=0.054 Score=42.52 Aligned_cols=59 Identities=14% Similarity=0.263 Sum_probs=55.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+-+||-.+=..-.++-.+.|+..|++++++|+.++.++|..+++.+..|++++|.-++
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 67899999999999999999999999999999999999999999999999999988776
No 176
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=95.52 E-value=0.075 Score=40.17 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=44.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+.++||.++|++-++.+++.++.. ++++..++|+.+...+...+. +..+|+|+|+
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~Tp 131 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS----ENQDIVVATP 131 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc----CCCCEEEECh
Confidence 357899999999999888776654 778999999998876654443 5678999997
No 177
>KOG0949|consensus
Probab=95.51 E-value=0.014 Score=48.00 Aligned_cols=38 Identities=24% Similarity=0.133 Sum_probs=36.5
Q ss_pred EEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 103 CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 103 v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++++|++++...|..+.=-||.|...||++|..+|.|+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGi 1002 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGI 1002 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhccc
Confidence 68899999999999999999999999999999999996
No 178
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.46 E-value=0.17 Score=38.76 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=44.4
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++||.++|++-+..+++.++.. ++.+..++|+.+.... .+.+..+..+|+|+|+
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~---~~~~~~~~~~Iiv~TP 221 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ---LKQLEARFCDILVATP 221 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHH---HHHHhCCCCCEEEECH
Confidence 47899999999999998887754 6789999999876543 3455667889999997
No 179
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=95.40 E-value=0.1 Score=43.83 Aligned_cols=60 Identities=7% Similarity=0.031 Sum_probs=54.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+.+|+.|.++|.=-|+.-++-|++. .++|..+..=.+..+...+++.+++|+++|+|.|=
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH 705 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH 705 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech
Confidence 4678999999999999888888664 66899999999999999999999999999999995
No 180
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.36 E-value=0.093 Score=39.59 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=42.0
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++||.++|++-|..+++.++.. ++++..++|+.+.+.....+ .+..+|+|+|+
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP 141 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL----ESGVDILIGTT 141 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEECH
Confidence 57999999999999987766543 78899999998766544333 24579999997
No 181
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=95.34 E-value=0.04 Score=32.15 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=31.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 111 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~ 111 (140)
..++++||.+-..+...+..|+..|+++..+.|+++
T Consensus 51 ~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 51 DKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 467899999878888999999999999999999964
No 182
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=95.17 E-value=0.39 Score=39.20 Aligned_cols=124 Identities=6% Similarity=0.100 Sum_probs=79.3
Q ss_pred CCCeEEEEEecCchhHHHHHHHhccCC-cEEEcCCcccCC-------------------------CeEEEEE--------
Q psy13287 11 HERQILLYSATFPLTVKNFMEKHLKDP-YEINLMEELTLK-------------------------GVTQYYA-------- 56 (140)
Q Consensus 11 ~~~q~v~~SAT~~~~~~~~~~~~~~~~-~~i~~~~~~~~~-------------------------~i~~~~~-------- 56 (140)
....+|++-|++....-++.+.+-++. ..+..++-..+. +-.+...
T Consensus 179 ~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 258 (824)
T PF02399_consen 179 NAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDP 258 (824)
T ss_pred hCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcc
Confidence 456789999999999998888865532 222222210000 0000000
Q ss_pred ---EcCccchHHHHHHHHhhCCCC-cEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 57 ---FVQERQKVHCLNTLFSKLQIN-QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 57 ---~~~~~~k~~~l~~ll~~~~~~-~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
.....+.......++.++..+ .+-||+.|...++.+++.......+|..++|+-+..+ ++.| ++.+|++=
T Consensus 259 ~~~~~~~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W--~~~~VviY 332 (824)
T PF02399_consen 259 TATAAISNDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW--KKYDVVIY 332 (824)
T ss_pred ccccccccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc--cceeEEEE
Confidence 000012234455555666544 4558999999999999999988889999999877652 2445 67899999
Q ss_pred ecccCCCC
Q psy13287 133 SGDSSAMM 140 (140)
Q Consensus 133 T~~~~rGl 140 (140)
|+....|+
T Consensus 333 T~~itvG~ 340 (824)
T PF02399_consen 333 TPVITVGL 340 (824)
T ss_pred eceEEEEe
Confidence 99888775
No 183
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=94.94 E-value=0.2 Score=40.76 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=44.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc---CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL---GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~---~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+..++|+.++|++-+.+..+.|+.. ++++..++|+.+.++|..+ + .+.+++|+|+
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~-~~~~IivtTP 137 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA----R-EHARYVLTNP 137 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH----h-cCCCEEEECh
Confidence 4468999999999999999988876 5789999999998776433 2 2468999996
No 184
>KOG0331|consensus
Probab=94.90 E-value=0.13 Score=39.89 Aligned_cols=55 Identities=4% Similarity=0.002 Sum_probs=44.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...+||-++||+-|..+.+.+++. ++++.+++|+.+...+..-++ . -++|+|+|+
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~---~-gvdiviaTP 223 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE---R-GVDVVIATP 223 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh---c-CCcEEEeCC
Confidence 345899999999999999988876 456899999998876655444 3 389999997
No 185
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=94.83 E-value=0.19 Score=38.41 Aligned_cols=54 Identities=7% Similarity=0.135 Sum_probs=42.8
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++||.++|++-|..+++.++.. ++.+..++|+.+.+.+... + .+..+|+|||+
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~~IiV~TP 133 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK---L-RGGVDVLVATP 133 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH---H-cCCCcEEEECh
Confidence 36899999999999998888764 6788899999887654332 2 36789999996
No 186
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=94.81 E-value=0.06 Score=31.99 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=32.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~ 111 (140)
+..+++++|.+-..+...+..|++.|+.+..+.|++.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 3467899999888889999999999999988999864
No 187
>KOG0338|consensus
Probab=94.77 E-value=0.27 Score=38.15 Aligned_cols=66 Identities=6% Similarity=0.061 Sum_probs=51.8
Q ss_pred HHHHHHHhhC---CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 65 HCLNTLFSKL---QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 65 ~~l~~ll~~~---~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..|..+|.+= .-.++||.|+|++-+..++...++. .+.|...-|+++...++.++. ..-+|+|+|+
T Consensus 238 PiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATP 310 (691)
T KOG0338|consen 238 PILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SRPDIVIATP 310 (691)
T ss_pred HHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hCCCEEEecc
Confidence 4455555432 2357899999999999888877765 788999999999998888877 3478999998
No 188
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=94.65 E-value=0.11 Score=30.14 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=32.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
+..++++||.+...+..++..|++.|+. +..+.|++.
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 4567899999999999999999999986 999999964
No 189
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=94.59 E-value=0.34 Score=38.80 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=45.5
Q ss_pred hhCCCCcEEEEeCchHHHHHHHHHHHh----cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 72 SKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 72 ~~~~~~~~lIF~~t~~~~~~~~~~L~~----~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
......+++|.++|+.-|...++.+.. .|++|..+.|++++++|.... .++|+++|+
T Consensus 140 ~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~ 200 (656)
T PRK12898 140 AALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTN 200 (656)
T ss_pred HhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECC
Confidence 334567899999999998888777765 489999999999987766543 468999997
No 190
>KOG0334|consensus
Probab=94.52 E-value=0.16 Score=42.01 Aligned_cols=52 Identities=10% Similarity=0.311 Sum_probs=44.1
Q ss_pred EEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 79 SIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+||-|+|++.+..+.+++++. ++++.+.+|+.... .-+...+.| ..|+|||.
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~---~qiaelkRg-~eIvV~tp 496 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGIS---QQIAELKRG-AEIVVCTP 496 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHH---HHHHHHhcC-CceEEecc
Confidence 689999999999998888764 88999999998765 446677888 99999998
No 191
>PRK13766 Hef nuclease; Provisional
Probab=94.44 E-value=0.31 Score=39.71 Aligned_cols=55 Identities=11% Similarity=0.170 Sum_probs=44.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc-Cc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL-GY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~-~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..+++||.|+|+.-++.+++.+++. +. .+..++|+.+..+|...+. +.+|+|+|+
T Consensus 57 ~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~ 115 (773)
T PRK13766 57 KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE-----KAKVIVATP 115 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh-----CCCEEEECH
Confidence 4678999999999999998888765 43 7899999999988876554 347999996
No 192
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=94.43 E-value=0.31 Score=39.49 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=49.8
Q ss_pred HHHHHhhCCCCcEEEEeCchHHHHHHHHHHHh----cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecc
Q psy13287 67 LNTLFSKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 67 l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~----~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
+.-++..+...++.|.++|..-|...++++.. .|+++..+.|+++.++|...+. .+|+++|+.
T Consensus 88 lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 88 LPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred HHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 33345566677899999998888888887765 3899999999999988776663 699999983
No 193
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=94.42 E-value=0.11 Score=30.52 Aligned_cols=37 Identities=11% Similarity=0.260 Sum_probs=31.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~~ 111 (140)
+..++++||++...+...+..|+..|+ ++..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 55 RATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 356799999998888999999999998 6999999863
No 194
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=94.40 E-value=0.6 Score=32.66 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=47.5
Q ss_pred CCCcEEEEeCc-----------hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC----CccEEEEecccCCC
Q psy13287 75 QINQSIIFCNS-----------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG----LCRNLVCSGDSSAM 139 (140)
Q Consensus 75 ~~~~~lIF~~t-----------~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g----~~~vlv~T~~~~rG 139 (140)
+.+-+||+.|. ..+++.+++.|++.|+.|. .+-+++..+=...+++|.+. ..+++|+- +++-|
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG 84 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVH-VKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHG 84 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCC
Confidence 34567888875 4689999999999999984 57789999988999999763 34555554 45544
No 195
>KOG0385|consensus
Probab=94.39 E-value=0.41 Score=38.90 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=47.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhc-CCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRS-GLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~-g~~~vlv~T~ 134 (140)
.++|-||-|+ .++...|.+++++. ++++..|||+ +++|....+++.. |..+|+|+|-
T Consensus 216 ~~GPfLVi~P-~StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsY 275 (971)
T KOG0385|consen 216 IPGPFLVIAP-KSTLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSY 275 (971)
T ss_pred CCCCeEEEee-HhhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehH
Confidence 3789999998 66777777777776 8899999999 8999999988875 6888888874
No 196
>KOG0339|consensus
Probab=94.36 E-value=0.27 Score=38.18 Aligned_cols=55 Identities=5% Similarity=0.064 Sum_probs=41.8
Q ss_pred CCc-EEEEeCchHHHHHHHHH---H-HhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQ-SIIFCNSTQRVELLAKK---I-TELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~-~lIF~~t~~~~~~~~~~---L-~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+| .+|.|+|++-|..+... | +-+|+++.++||+.+.-++..-++ -...++|||+
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTP 354 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATP 354 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEech
Confidence 345 45777999998877554 4 345899999999999987665555 4578999998
No 197
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.30 E-value=0.69 Score=28.18 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=43.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcC---ceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecc
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELG---YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~---~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
..++++++|++...++++.+.+.... ..+..+++......+. ....+...++++|.-
T Consensus 29 ~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~ 88 (144)
T cd00046 29 KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPG 88 (144)
T ss_pred cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECcH
Confidence 45789999999999999888886653 7888999886655544 233456788888863
No 198
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=94.09 E-value=0.47 Score=38.77 Aligned_cols=73 Identities=11% Similarity=0.147 Sum_probs=50.8
Q ss_pred HHHHHHhhC--C--CCcEEEEeCchHHHHHHHHHHHhc----C-ceEEEEecCCCHHHHHHHHHHhhcCC--ccEEEEec
Q psy13287 66 CLNTLFSKL--Q--INQSIIFCNSTQRVELLAKKITEL----G-YCCYYIHARMAQAHRNRVFHDFRSGL--CRNLVCSG 134 (140)
Q Consensus 66 ~l~~ll~~~--~--~~~~lIF~~t~~~~~~~~~~L~~~----~-~~v~~~h~~~~~~~R~~~~~~f~~g~--~~vlv~T~ 134 (140)
.+.+++... . .++|||||.+...|+.+.+.|++. + --+..+.|+ .++-+..++.|...+ -+|.|+.|
T Consensus 412 ~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d--~~~~q~~Id~f~~ke~~P~Iaitvd 489 (875)
T COG4096 412 ELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGD--AEQAQALIDNFIDKEKYPRIAITVD 489 (875)
T ss_pred HHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEecc--chhhHHHHHHHHhcCCCCceEEehh
Confidence 344455442 2 578999999999999999999875 2 236677777 444456778887633 35777777
Q ss_pred ccCCCC
Q psy13287 135 DSSAMM 140 (140)
Q Consensus 135 ~~~rGl 140 (140)
++.-|+
T Consensus 490 lL~TGi 495 (875)
T COG4096 490 LLTTGV 495 (875)
T ss_pred hhhcCC
Confidence 777664
No 199
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=94.01 E-value=0.16 Score=30.15 Aligned_cols=37 Identities=16% Similarity=0.408 Sum_probs=30.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
+..+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 4567899999887888888999999984 888999864
No 200
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=93.93 E-value=0.62 Score=38.58 Aligned_cols=57 Identities=9% Similarity=0.050 Sum_probs=46.6
Q ss_pred hhCCCCcEEEEeCchHHHHHHHHHHHh----cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 72 SKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 72 ~~~~~~~~lIF~~t~~~~~~~~~~L~~----~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.......+.|.++|+.-|...++++.. .|+.|.+++|+++..+|...+ +.+|+++|+
T Consensus 119 ~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~ 179 (896)
T PRK13104 119 NAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTN 179 (896)
T ss_pred HHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECC
Confidence 444556789999999888888887765 388999999999999886665 479999998
No 201
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=93.77 E-value=0.14 Score=30.08 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=30.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 111 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~ 111 (140)
..++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 567999999877788889999999999888888864
No 202
>PTZ00110 helicase; Provisional
Probab=93.68 E-value=0.41 Score=37.57 Aligned_cols=54 Identities=6% Similarity=0.039 Sum_probs=41.8
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..+||.++|++-|..+.+.+++. ++++..++|+.+....... ++. ..+|+|+|+
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~---l~~-~~~IlVaTP 261 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYA---LRR-GVEILIACP 261 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHH---HHc-CCCEEEECH
Confidence 45899999999999998888775 5678889999876654333 333 479999997
No 203
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=93.56 E-value=0.71 Score=40.43 Aligned_cols=54 Identities=4% Similarity=-0.022 Sum_probs=44.0
Q ss_pred CcEEEEeCchHHHHHHHHHHHh----------------cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITE----------------LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~----------------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++|+.++++.-+.++.+.|+. .++++...||+.+.++|...++ +..+|||+|+
T Consensus 38 ~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~----~ppdILVTTP 107 (1490)
T PRK09751 38 SRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR----NPPDILITTP 107 (1490)
T ss_pred CEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc----CCCCEEEecH
Confidence 5689999999999888887753 2678999999999998876544 4678999997
No 204
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=93.52 E-value=0.1 Score=32.31 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=32.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCc--eEEEEecCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGY--CCYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~--~v~~~h~~~~ 111 (140)
+..++++||++-..+...+..|+..|+ ++..+.|++.
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 456789999998889999999999999 6999999964
No 205
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=93.22 E-value=0.22 Score=29.42 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=30.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 111 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~~ 111 (140)
..++++||++-..+...+..|.+.|+ ++..+.|++.
T Consensus 54 ~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 54 ANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 56789999998888899999998887 6888999853
No 206
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=93.19 E-value=0.7 Score=37.89 Aligned_cols=62 Identities=6% Similarity=0.101 Sum_probs=47.4
Q ss_pred HHHHHhhCCCCcEEEEeCchHHHHHHHHHHHh----cCceEEEEecCCC-HHHHHHHHHHhhcCCccEEEEec
Q psy13287 67 LNTLFSKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMA-QAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 67 l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~----~~~~v~~~h~~~~-~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+.-++......++.|.++|..-|..-++.+.. .|++|+.+.|+++ .++|.... ..+|+++|+
T Consensus 110 lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y------~~dIvygT~ 176 (790)
T PRK09200 110 MPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY------EADIIYTTN 176 (790)
T ss_pred HHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc------CCCEEEECC
Confidence 33344556678899999998887777666654 5999999999999 88877543 379999996
No 207
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=93.14 E-value=0.22 Score=30.20 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=30.5
Q ss_pred CCCcEEEEeCch--HHHHHHHHHHHhcCceEEEEecCCC
Q psy13287 75 QINQSIIFCNST--QRVELLAKKITELGYCCYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~--~~~~~~~~~L~~~~~~v~~~h~~~~ 111 (140)
+..++++||++. ..+..++..|+..|+++..+.|++.
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 356789999875 4788899999999999999999853
No 208
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=93.07 E-value=0.44 Score=27.76 Aligned_cols=45 Identities=16% Similarity=0.354 Sum_probs=34.8
Q ss_pred HHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCCC
Q psy13287 67 LNTLFSKL-QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 111 (140)
Q Consensus 67 l~~ll~~~-~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~~ 111 (140)
+.+.+... +..+++++|++-..+...+..|+..|+ ++..+.|++.
T Consensus 46 ~~~~~~~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 46 LDDWLGDLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred HHHHHhhcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 33444444 356789999999999999999999998 5888888853
No 209
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=93.05 E-value=0.28 Score=27.92 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=31.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~~ 111 (140)
+..++++||++...+..++..|+..|+ ++..+-|++.
T Consensus 49 ~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 49 KDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 456789999998899999999999975 5888888864
No 210
>PRK05320 rhodanese superfamily protein; Provisional
Probab=92.95 E-value=0.31 Score=34.52 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=34.2
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCCH
Q psy13287 74 LQINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQ 112 (140)
Q Consensus 74 ~~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~~ 112 (140)
.+..++++||.+-..++..+..|++.|+. |..+.|++..
T Consensus 173 ~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 173 LAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 35678999999999999999999999995 8999999854
No 211
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=92.91 E-value=0.38 Score=29.30 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=35.3
Q ss_pred HHHHHHHhhC---CCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCC
Q psy13287 65 HCLNTLFSKL---QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARM 110 (140)
Q Consensus 65 ~~l~~ll~~~---~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~ 110 (140)
+.+...+... +..++++||++-..+...+..|+..|+ ++..+-|++
T Consensus 64 ~~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 64 EELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred HHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 4455555543 356789999998888899999999998 488888875
No 212
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=92.85 E-value=0.18 Score=31.51 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=30.6
Q ss_pred CCCcEEEEeC-chHHHHHHHHHHHhcCceEEEEecCCCH
Q psy13287 75 QINQSIIFCN-STQRVELLAKKITELGYCCYYIHARMAQ 112 (140)
Q Consensus 75 ~~~~~lIF~~-t~~~~~~~~~~L~~~~~~v~~~h~~~~~ 112 (140)
+..+++|||+ +-..+...+..|+..|+++..+.|+++.
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHH
Confidence 3567899997 4566778888888889999999999653
No 213
>KOG0343|consensus
Probab=92.83 E-value=0.28 Score=38.44 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=41.6
Q ss_pred EEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 79 SIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+||..+|++-|....+-|++- +++++.+-|+.+.. .+.-|-.+++|||||+
T Consensus 144 alIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k-----~E~eRi~~mNILVCTP 198 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK-----FELERISQMNILVCTP 198 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH-----HHHHhhhcCCeEEech
Confidence 799999999999999999875 55788888886643 4445557789999998
No 214
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=92.82 E-value=0.21 Score=29.68 Aligned_cols=37 Identities=14% Similarity=0.354 Sum_probs=31.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCCCH
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMAQ 112 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~~~ 112 (140)
..++++||++-..+...+..|.+.|+ ++..+.|++..
T Consensus 58 ~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 58 DKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 56789999998888999999999998 58899998543
No 215
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=92.80 E-value=0.97 Score=37.53 Aligned_cols=66 Identities=8% Similarity=0.057 Sum_probs=51.9
Q ss_pred HHHHHHHHhhCCCCcEEEEeCc----hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecc
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNS----TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t----~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
...+..++......++-|.+.+ +++++++...+...|+.|.++.+++++++|...++ ++|+.+|+.
T Consensus 111 vA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~ 180 (913)
T PRK13103 111 VGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNN 180 (913)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEccc
Confidence 4556666677777777777776 55566666666677999999999999999998887 799999984
No 216
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=92.77 E-value=0.27 Score=28.78 Aligned_cols=36 Identities=14% Similarity=0.317 Sum_probs=29.1
Q ss_pred CCcEEEEeCc--hHHHHHHHHHHHhcCc-eEEEEecCCC
Q psy13287 76 INQSIIFCNS--TQRVELLAKKITELGY-CCYYIHARMA 111 (140)
Q Consensus 76 ~~~~lIF~~t--~~~~~~~~~~L~~~~~-~v~~~h~~~~ 111 (140)
..++++||.+ +..+...++.|+..|+ ++..+.|++.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 5678999998 4557888899999987 5888988864
No 217
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=92.71 E-value=1.5 Score=30.70 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=39.8
Q ss_pred CCCcEEEEeCc------------hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 75 QINQSIIFCNS------------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 75 ~~~~~lIF~~t------------~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
+.+.+||+.|. .++++.+++.|++.|+.| ..+.+++.++=.+.+++|.+
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~nlt~~~~~~~l~~f~~ 68 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEV-EVKNNLTAEEILEELKEFAS 68 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEE-EEeCCCCHHHHHHHHHHHHh
Confidence 44567777763 577999999999999998 56888899888888888974
No 218
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=92.59 E-value=0.22 Score=30.04 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=30.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCce--EEEEecCCCH
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYC--CYYIHARMAQ 112 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~--v~~~h~~~~~ 112 (140)
..++++||.+-..+...+..|+..|+. +..+.|+++.
T Consensus 66 ~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~ 104 (109)
T cd01533 66 RTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQG 104 (109)
T ss_pred CCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHH
Confidence 457899999887778889999999984 8899999743
No 219
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=92.44 E-value=0.39 Score=28.57 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=30.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
..++++||.+-..+...+..|+..|+. +..+.|+++
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 567899998888888899999999985 888999864
No 220
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=92.29 E-value=0.95 Score=35.06 Aligned_cols=59 Identities=8% Similarity=0.091 Sum_probs=46.4
Q ss_pred HHhhCCCCcEEEEeCchHHHHHHHHHHHhc-Cc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 70 LFSKLQINQSIIFCNSTQRVELLAKKITEL-GY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 70 ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~-~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+...+ +++|+-.+|+--+..-++.+++. |+ .+..+.|..++++|...+. +.+|.|+|+
T Consensus 53 ~l~~~~-~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTP 115 (542)
T COG1111 53 RLRWFG-GKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA-----KKKVFVATP 115 (542)
T ss_pred HHHhcC-CeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh-----hCCEEEecc
Confidence 444433 36788889999999999988775 55 5889999999999987765 348889887
No 221
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=92.08 E-value=0.24 Score=29.55 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=30.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
..++++||.+-..+...+..|...|++ +..+.|++.
T Consensus 66 ~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 66 DKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 567899999988888999999999984 888888863
No 222
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=91.90 E-value=0.18 Score=29.86 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=30.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
+..+++|||.+-..+...+..|+..|+. +..+-|++.
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 3567899998877788889999999986 888888854
No 223
>KOG0329|consensus
Probab=91.75 E-value=0.53 Score=33.48 Aligned_cols=53 Identities=6% Similarity=0.123 Sum_probs=40.6
Q ss_pred cEEEEeCchHHHHHHHHHHHh---c--CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 78 QSIIFCNSTQRVELLAKKITE---L--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L~~---~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++|.|+|++-|-.+.++... + +.+++.+.|+++-..-.+++.. .-.|+|+|+
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTP 169 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTP 169 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCc
Confidence 479999999999988776543 3 6789999999986654555443 567899987
No 224
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=91.50 E-value=1.6 Score=36.45 Aligned_cols=53 Identities=6% Similarity=0.062 Sum_probs=43.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..+++|-++|+.-|...++++... |+++.++.|+++.+++...+ ..+|+++|+
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTP 191 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTA 191 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECC
Confidence 345788899999999888888654 78999999999998876443 379999998
No 225
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=91.41 E-value=1.7 Score=35.95 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=47.8
Q ss_pred HHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHH----hcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 65 HCLNTLFSKLQINQSIIFCNSTQRVELLAKKIT----ELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 65 ~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~----~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..+.-++..+...++-|.++|.--|..-++.+. ..|++|+.+.|+++.++|...++ .+|+++|+
T Consensus 111 a~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~ 178 (830)
T PRK12904 111 ATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTN 178 (830)
T ss_pred HHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECC
Confidence 334444556566667788988766666655554 45999999999999999888864 78999998
No 226
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=91.33 E-value=0.5 Score=29.02 Aligned_cols=37 Identities=3% Similarity=-0.022 Sum_probs=30.6
Q ss_pred CCCcEEEEeCc-hHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 75 QINQSIIFCNS-TQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t-~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
+..++++||++ -..+...+..|+..|++ +..+-|++.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 45678999988 58888889999999975 888989864
No 227
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=91.07 E-value=0.74 Score=29.94 Aligned_cols=43 Identities=37% Similarity=0.604 Sum_probs=33.4
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCC
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLME 44 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 44 (140)
+..++..+++..+++++|||+++........++.+...+....
T Consensus 150 ~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 150 LEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 3456666667899999999999999998888888666665543
No 228
>KOG0342|consensus
Probab=91.06 E-value=1 Score=34.70 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=39.4
Q ss_pred cEEEEeCchHHHHHHHHHHHhc-----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 78 QSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L~~~-----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++|.|+|++-|...+..+++. ++.|..+-|+.+...- .+++.. .+.+||||+
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e---~~kl~k-~~niliATP 213 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVE---ADKLVK-GCNILIATP 213 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHH---HHHhhc-cccEEEeCC
Confidence 4789999999988776666543 6788888898765433 344444 689999998
No 229
>PRK02362 ski2-like helicase; Provisional
Probab=90.73 E-value=0.64 Score=37.82 Aligned_cols=53 Identities=6% Similarity=-0.048 Sum_probs=42.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc---CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL---GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~---~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+.+++++.+++++-|.+.++.++.. |+++..++|+.+...+ . .++.+|+|||+
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~--l~~~~IiV~Tp 121 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-----W--LGDNDIIVATS 121 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-----c--cCCCCEEEECH
Confidence 4678999999999999999988765 7899999999765431 1 24578999996
No 230
>KOG0350|consensus
Probab=90.66 E-value=0.7 Score=35.84 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=48.4
Q ss_pred HHHHHhhCC--CCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHH-HHHHHHHhhcCCccEEEEec
Q psy13287 67 LNTLFSKLQ--INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAH-RNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 67 l~~ll~~~~--~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~-R~~~~~~f~~g~~~vlv~T~ 134 (140)
+.++|...+ --+++|.++++.-+-.++..|..+ |..|....|.-+.+. -......-....++|||+|+
T Consensus 204 IVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTP 278 (620)
T KOG0350|consen 204 IVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATP 278 (620)
T ss_pred HHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCc
Confidence 444444432 347899999999999999999876 677888888766543 33333444456789999998
No 231
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=90.64 E-value=1.2 Score=28.61 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=35.5
Q ss_pred HHHHHHhhCC-CCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCCC
Q psy13287 66 CLNTLFSKLQ-INQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 111 (140)
Q Consensus 66 ~l~~ll~~~~-~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~~ 111 (140)
.+.+.+...+ ..+++|+|.+-..+..++..|+..|+ ++..+.|++.
T Consensus 38 ~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 38 QLAQALEKLPAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred HHHHHHHhcCCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 3444454443 46799999998888888999998887 7999999943
No 232
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=90.58 E-value=1.6 Score=36.23 Aligned_cols=56 Identities=7% Similarity=0.038 Sum_probs=42.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHH----hcC--ceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKIT----ELG--YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~----~~~--~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+..++|++.+++.-+.+-.+.|+ +.+ +.+..|+|+.++++|. .+..+.-+||++++
T Consensus 114 ~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNp 175 (851)
T COG1205 114 PSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRNPPDILLTNP 175 (851)
T ss_pred cCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH----HHHhCCCCEEEeCH
Confidence 44578999999766665555554 445 7899999999999987 44558899999886
No 233
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=90.35 E-value=3.3 Score=33.48 Aligned_cols=79 Identities=10% Similarity=0.064 Sum_probs=56.9
Q ss_pred EEEcCccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc-Cce-EEEE-------------------------e
Q psy13287 55 YAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL-GYC-CYYI-------------------------H 107 (140)
Q Consensus 55 ~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~-~~~-v~~~-------------------------h 107 (140)
+.-+.++.|.-.++.++.+. +.++||.+++...|..+++.|+.. +-+ |.++ .
T Consensus 34 l~Gvtgs~kt~~~a~~~~~~-~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~ 112 (655)
T TIGR00631 34 LLGVTGSGKTFTMANVIAQV-NRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASI 112 (655)
T ss_pred EECCCCcHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCC
Confidence 33456777888888887764 568999999999999999999876 223 6555 1
Q ss_pred cCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 108 ARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 108 ~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+.--...|..++.++..++-.|+|+|-
T Consensus 113 ~~~i~~~R~~al~~L~~~~~~ivVasv 139 (655)
T TIGR00631 113 NDEIERLRHSATRSLLERRDVIVVASV 139 (655)
T ss_pred ChHHHHHHHHHHHHHHhCCCeEEEEcH
Confidence 111234688999999887666666664
No 234
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=90.31 E-value=3.5 Score=26.69 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=39.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcC-----ceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELG-----YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~-----~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++++.+++...+..+++.+.+.. .....+++... ...++.+.++..+++++|.
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~ 113 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTTP 113 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEeCh
Confidence 4789999999999999988887664 34555555433 3445566666668888883
No 235
>PRK01415 hypothetical protein; Validated
Probab=90.10 E-value=0.78 Score=32.32 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=34.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCCHH
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQA 113 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~~~ 113 (140)
+++++++||.+-..++..+..|++.|+. |..+.|++..-
T Consensus 170 k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w 209 (247)
T PRK01415 170 KGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQY 209 (247)
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHH
Confidence 4678999999999999999999999995 99999997543
No 236
>PRK13767 ATP-dependent helicase; Provisional
Probab=90.03 E-value=1.6 Score=36.44 Aligned_cols=54 Identities=6% Similarity=0.010 Sum_probs=41.4
Q ss_pred CcEEEEeCchHHHHHHHHHHHh---------------c-CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITE---------------L-GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~---------------~-~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++|+.+++++-+.++++.|.. . ++++...||+.+..+|...+. ...+|+|||+
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~----~~p~IlVtTP 154 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK----KPPHILITTP 154 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh----CCCCEEEecH
Confidence 3589999999998887764431 1 567899999999988766554 3568999997
No 237
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=89.91 E-value=3.7 Score=29.05 Aligned_cols=67 Identities=12% Similarity=0.236 Sum_probs=45.5
Q ss_pred hccCCcEEEcCC---cccCCCeEEEEEEcCccch-HHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCc
Q psy13287 33 HLKDPYEINLME---ELTLKGVTQYYAFVQERQK-VHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY 101 (140)
Q Consensus 33 ~~~~~~~i~~~~---~~~~~~i~~~~~~~~~~~k-~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~ 101 (140)
.+.+...+..++ ......+...+.-.++++. ++.+.++|+. .+...+|+++.+++++..+.|++.|+
T Consensus 143 ~l~d~v~~~~~Dv~~~~~~~~vDav~LDmp~PW~~le~~~~~Lkp--gg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 143 GLGDRVTLKLGDVREGIDEEDVDAVFLDLPDPWNVLEHVSDALKP--GGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred ccccceEEEeccccccccccccCEEEEcCCChHHHHHHHHHHhCC--CcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 344544444432 2334477777777777765 4555555543 47889999999999999999999854
No 238
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=89.91 E-value=0.59 Score=32.00 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=52.3
Q ss_pred cchHHHHHHHHhh-CCCCcEEEEeCchHHHHHHHHHHHhcCce---EEEEecCCCHHHHHHHHHHhhcCCccEEEEecc
Q psy13287 61 RQKVHCLNTLFSK-LQINQSIIFCNSTQRVELLAKKITELGYC---CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 61 ~~k~~~l~~ll~~-~~~~~~lIF~~t~~~~~~~~~~L~~~~~~---v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
....+.|.+.+.. ..++++++++.. ..-..+.+.|++.|+. +..|.. .+...+....+.|..+++++++-|+.
T Consensus 101 ~~~s~~L~~~l~~~~~~~~vl~~~g~-~~~~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~~~~v~ftS~ 177 (231)
T PF02602_consen 101 EGSSEGLAELLKEQLRGKRVLILRGE-GGRPDLPEKLREAGIEVTEVIVYET-PPEELSPELKEALDRGEIDAVVFTSP 177 (231)
T ss_dssp SSSHHHHHGGHHHCCTTEEEEEEESS-SSCHHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHHHHHTTTSEEEESSH
T ss_pred CCCHHHHHHHHHhhCCCCeEEEEcCC-CccHHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHHHHcCCCCEEEECCH
Confidence 3444556666664 445566666643 3356688999998865 455666 77788999999999999999988873
No 239
>KOG0340|consensus
Probab=89.89 E-value=1.5 Score=32.62 Aligned_cols=52 Identities=8% Similarity=0.084 Sum_probs=41.5
Q ss_pred EEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 79 SIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
++||++|++-+-.+++.|... +.++..+.|+++.......+. .+-+++|+|+
T Consensus 78 alvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~----~rPHvVvatP 133 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILS----DRPHVVVATP 133 (442)
T ss_pred EEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcc----cCCCeEecCc
Confidence 799999999999999999866 568999999988654443332 4567888887
No 240
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=89.87 E-value=0.9 Score=27.04 Aligned_cols=57 Identities=7% Similarity=0.135 Sum_probs=40.1
Q ss_pred EEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHH------------HHHHHHHHhhcCCccEEEEecc
Q psy13287 79 SIIFCNSTQRVELLAKKITELGYCCYYIHARMAQA------------HRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~------------~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
.||.+...+.+..+++.|...++.+....|.+-.. .+...+.+...+--.|++|||.
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~ 69 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDP 69 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-S
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCC
Confidence 47788889999999999976667888888865211 2244555554566789999994
No 241
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=89.71 E-value=1.6 Score=37.01 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=48.8
Q ss_pred EEEEeCchHHHHHHHHHHHhc----C--ceEEEEecCCCHHHHHHHHHHh----------------------hc----CC
Q psy13287 79 SIIFCNSTQRVELLAKKITEL----G--YCCYYIHARMAQAHRNRVFHDF----------------------RS----GL 126 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~----~--~~v~~~h~~~~~~~R~~~~~~f----------------------~~----g~ 126 (140)
++|=.++.+.+-.+|+.|-.. + +.+.+||+..+...|..+++.+ ++ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 578888899999999988654 3 3578899999888888877664 12 46
Q ss_pred ccEEEEecccCCCC
Q psy13287 127 CRNLVCSGDSSAMM 140 (140)
Q Consensus 127 ~~vlv~T~~~~rGl 140 (140)
..++|+|.+.+.|+
T Consensus 839 ~~i~v~Tqv~E~g~ 852 (1110)
T TIGR02562 839 LFIVLATPVEEVGR 852 (1110)
T ss_pred CeEEEEeeeEEEEe
Confidence 78999999988774
No 242
>KOG4439|consensus
Probab=89.63 E-value=2.8 Score=34.12 Aligned_cols=85 Identities=13% Similarity=0.203 Sum_probs=55.5
Q ss_pred EEEcCccchHHHHHHHHhhC---CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccE
Q psy13287 55 YAFVQERQKVHCLNTLFSKL---QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRN 129 (140)
Q Consensus 55 ~~~~~~~~k~~~l~~ll~~~---~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~v 129 (140)
|-....+.|+..+.+.+... ...+++|...=.+...-+...|.+.|.....+||.....+|+.++++|.. |..+|
T Consensus 722 Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rV 801 (901)
T KOG4439|consen 722 FEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARV 801 (901)
T ss_pred cccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceE
Confidence 33334556776666666554 34455554443444455566777779999999999999999999999974 54666
Q ss_pred EE-EecccCCC
Q psy13287 130 LV-CSGDSSAM 139 (140)
Q Consensus 130 lv-~T~~~~rG 139 (140)
++ +=...+.|
T Consensus 802 mLlSLtAGGVG 812 (901)
T KOG4439|consen 802 MLLSLTAGGVG 812 (901)
T ss_pred EEEEEccCcce
Confidence 44 33333333
No 243
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=89.29 E-value=0.31 Score=28.84 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=27.1
Q ss_pred HHHHHHhcCceEEEEec----CCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 92 LAKKITELGYCCYYIHA----RMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~----~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
-+++|++.|+.+..+.. +-.+.-+..+++.+++|+++.+|.|.
T Consensus 22 Ta~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~ 68 (95)
T PF02142_consen 22 TAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTP 68 (95)
T ss_dssp HHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE-
T ss_pred HHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeC
Confidence 35667788888433322 21333455799999999999999986
No 244
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=89.27 E-value=1.7 Score=27.68 Aligned_cols=47 Identities=9% Similarity=-0.080 Sum_probs=34.1
Q ss_pred HHHHHHHhhC---CCCcEEEEeCc---hHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 65 HCLNTLFSKL---QINQSIIFCNS---TQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 65 ~~l~~ll~~~---~~~~~lIF~~t---~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
+.+.+++... +..++|+||.+ -..+-.++-.|+..|+. +..|.|+++
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 4566667665 35679999976 45566777788888874 889999854
No 245
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=88.85 E-value=5.6 Score=27.02 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=44.8
Q ss_pred CccchHHHHHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhcCceE---EEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 59 QERQKVHCLNTLFSKL-QINQSIIFCNSTQRVELLAKKITELGYCC---YYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 59 ~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~~~~~L~~~~~~v---~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+....+.|.+++... ..+..+++.........+.+.|++.|..+ ..|.-.-.... ....+.|.++..++++-|+
T Consensus 103 ~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~-~~~~~~l~~~~~~~iiftS 181 (239)
T cd06578 103 PEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTVPPDLD-AELLELLEEGAIDAVLFTS 181 (239)
T ss_pred CCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEEEEEECCCCc-HHHHHHHHcCCCcEEEEeC
Confidence 3444456677767664 34445555555666678999999887654 33332211111 3455667777777888776
No 246
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=88.66 E-value=2 Score=25.95 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=28.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 111 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~ 111 (140)
..++++||.+-..+...+..|.+.|+......|++.
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHH
Confidence 456899999988888899999999987555567743
No 247
>PRK00254 ski2-like helicase; Provisional
Probab=88.58 E-value=1.7 Score=35.27 Aligned_cols=53 Identities=8% Similarity=0.133 Sum_probs=41.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh---cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITE---LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~---~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+.+++|+-++++.-+.+.++.++. .|+++..++|+.+...+ + .++.+|+|+|+
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~------~-~~~~~IiV~Tp 122 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE------W-LGKYDIIIATA 122 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh------h-hccCCEEEEcH
Confidence 356899999999999999887764 47899999999876432 1 25678999995
No 248
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=88.43 E-value=2.9 Score=32.66 Aligned_cols=55 Identities=5% Similarity=-0.005 Sum_probs=38.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++||.++|++-|..+.+.++.. ++++..+.|+.+...+. .+++. ..+++|+|+
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~~-~~~IiV~TP 254 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQQ-GVELIVGTP 254 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhcC-CCCEEEECH
Confidence 356899999999998887776654 55677777776654432 23333 479999996
No 249
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=88.26 E-value=0.83 Score=26.64 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=29.8
Q ss_pred HHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 93 AKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 93 ~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+++|++.|+.|...+..... .+..+.+.+++|+++.+|.|.
T Consensus 23 a~~L~~~Gi~~~~~~~ki~~-~~~~i~~~i~~g~id~VIn~~ 63 (90)
T smart00851 23 AKFLREAGLPVKTLHPKVHG-GILAILDLIKNGEIDLVINTL 63 (90)
T ss_pred HHHHHHCCCcceeccCCCCC-CCHHHHHHhcCCCeEEEEECC
Confidence 56677788887545544432 234689999999999999986
No 250
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=88.24 E-value=4.4 Score=27.86 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=43.3
Q ss_pred CccchHHHHHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhcCceE---EEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 59 QERQKVHCLNTLFSKL-QINQSIIFCNSTQRVELLAKKITELGYCC---YYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 59 ~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~~~~~L~~~~~~v---~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+.....+.+...+... ..++-++++-.....+.+.+.|++.|..+ ..|.-......-......+..+..++++-|+
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS 185 (249)
T PRK05928 106 PEDGESSELLLELPELLLKGKRVLYLRGNGGREVLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQSGEVDAVIFTS 185 (249)
T ss_pred CCCCcChHHHHhChhhhcCCCEEEEECCCCCHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHHhCCCCEEEECC
Confidence 3333444444444433 23344555555667889999999988753 3333322222223445566678899988887
No 251
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=88.15 E-value=0.93 Score=27.81 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=31.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCCCH
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMAQ 112 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~~~ 112 (140)
+..++++||++-..+...+..|+..|+ ++..+.|++..
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~ 101 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEG 101 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceec
Confidence 456789999998889999999999998 47778888653
No 252
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=88.13 E-value=5.9 Score=32.02 Aligned_cols=78 Identities=12% Similarity=0.126 Sum_probs=54.5
Q ss_pred EEcCccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc-Cc-eEEEE--------------------ecC--CC
Q psy13287 56 AFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL-GY-CCYYI--------------------HAR--MA 111 (140)
Q Consensus 56 ~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~-~~-~v~~~--------------------h~~--~~ 111 (140)
.-+.+..|...+..+.+.. +.++||-+++...|+.+++.|+.. +- .|..+ +.. .+
T Consensus 38 ~Gl~gs~ka~lia~l~~~~-~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~ 116 (652)
T PRK05298 38 LGVTGSGKTFTMANVIARL-QRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSIN 116 (652)
T ss_pred EcCCCcHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCC
Confidence 3345677887888777663 567999999999999999999776 32 35555 111 11
Q ss_pred ---HHHHHHHHHHhhcCCccEEEEec
Q psy13287 112 ---QAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 112 ---~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...|..++.++..++-.|+|+|-
T Consensus 117 ~~~~~~R~~~l~~L~~~~~~ivv~s~ 142 (652)
T PRK05298 117 EEIERLRHSATKSLLERRDVIVVASV 142 (652)
T ss_pred hHHHHHHHHHHHHHHhCCCEEEEEcH
Confidence 34689999999887655555554
No 253
>KOG0345|consensus
Probab=88.05 E-value=2.6 Score=32.61 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=41.1
Q ss_pred EEEEeCchHHHHHHHHHH---Hhc--CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 79 SIIFCNSTQRVELLAKKI---TEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L---~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
++|..+|++-|..+.+-+ ... ++.+..+-|+.+.+ +-+..|++...+|||+|+
T Consensus 82 alIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~---~Di~~fkee~~nIlVgTP 139 (567)
T KOG0345|consen 82 ALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVE---EDIKTFKEEGPNILVGTP 139 (567)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHH---HHHHHHHHhCCcEEEeCc
Confidence 689999998877654433 222 67899999996654 567789988899999998
No 254
>PTZ00424 helicase 45; Provisional
Probab=87.95 E-value=5.6 Score=29.63 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=40.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++|+.+++++-+..+.+.++.. +..+....|+....+. ++.+.++ .+++|+|.
T Consensus 95 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~-~~Ivv~Tp 154 (401)
T PTZ00424 95 NACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKAG-VHMVVGTP 154 (401)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcCC-CCEEEECc
Confidence 3457999999999999888877665 4567788888765432 3444443 68999997
No 255
>KOG0335|consensus
Probab=87.87 E-value=1.8 Score=33.43 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=41.5
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+++||..+|++-+..+++.-++. +.++...+|+.+. ..-..+..+.++++|||+
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~----~~q~~~~~~gcdIlvaTp 210 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDL----GAQLRFIKRGCDILVATP 210 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcch----hhhhhhhccCccEEEecC
Confidence 56899999999999999988775 5567788888443 223345567899999997
No 256
>KOG0348|consensus
Probab=87.81 E-value=1.1 Score=35.18 Aligned_cols=51 Identities=8% Similarity=0.098 Sum_probs=35.5
Q ss_pred EEEEeCchHHHHHHHHHHHhcCce------EEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 79 SIIFCNSTQRVELLAKKITELGYC------CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~~~~------v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+||.++|++-|..+++.+.+.--+ +..+=|+-.+.| -.++|.| ++|||+|+
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSE----KARLRKG-iNILIgTP 270 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSE----KARLRKG-INILIGTP 270 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccH----HHHHhcC-ceEEEcCc
Confidence 799999999999998888776323 333333333333 4456666 89999998
No 257
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=87.77 E-value=2.1 Score=25.61 Aligned_cols=45 Identities=13% Similarity=0.298 Sum_probs=33.6
Q ss_pred HHHHHhhCC-CCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 67 LNTLFSKLQ-INQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 67 l~~ll~~~~-~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
+.+.+...+ ..+.+++|.+-..+...+..|+..|+. +..+.|++.
T Consensus 48 l~~~~~~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 48 LGAFMRQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred HHHHHHhcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 333444343 466889999888888889999999985 888999853
No 258
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=87.46 E-value=2 Score=35.57 Aligned_cols=55 Identities=7% Similarity=0.073 Sum_probs=38.4
Q ss_pred CCcEEEEe-CchHHHHHHHHHHHhc---------------------------CceEEEEecCCCHHHHHHHHHHhhcCCc
Q psy13287 76 INQSIIFC-NSTQRVELLAKKITEL---------------------------GYCCYYIHARMAQAHRNRVFHDFRSGLC 127 (140)
Q Consensus 76 ~~~~lIF~-~t~~~~~~~~~~L~~~---------------------------~~~v~~~h~~~~~~~R~~~~~~f~~g~~ 127 (140)
..+.|||+ ++++-++.+++.+++. ++++..++|+.+.+... +... ...
T Consensus 61 ~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~---~~l~-~~p 136 (844)
T TIGR02621 61 VPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW---MLDP-HRP 136 (844)
T ss_pred ccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH---HhcC-CCC
Confidence 35678877 9998888777766543 26789999998765332 3333 346
Q ss_pred cEEEEec
Q psy13287 128 RNLVCSG 134 (140)
Q Consensus 128 ~vlv~T~ 134 (140)
.|+|+|-
T Consensus 137 ~IIVgT~ 143 (844)
T TIGR02621 137 AVIVGTV 143 (844)
T ss_pred cEEEECH
Confidence 8999993
No 259
>PLN02160 thiosulfate sulfurtransferase
Probab=87.45 E-value=1.1 Score=28.42 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=31.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
+..++++||.+-..+...+..|.+.|+. +..+.|++.
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 3567999999999999999999999984 888888853
No 260
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=87.40 E-value=6 Score=27.77 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=41.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceE---EEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCC---YYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v---~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+++-++++-....-+.+.+.|++.|+.| ..|.-...........+.+..|.+++++-|+
T Consensus 129 ~~~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~ftS 190 (255)
T PRK05752 129 PDPRVLIMRGEGGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVSS 190 (255)
T ss_pred CCCEEEEEccCccHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEECC
Confidence 4444555555667778999999998864 3444333444456778888899999888886
No 261
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=87.21 E-value=4.8 Score=33.11 Aligned_cols=61 Identities=7% Similarity=0.018 Sum_probs=43.1
Q ss_pred HHHHhhCCCCcEEEEeCchHHHHHHHHHH----HhcCceEEEEecC-----CCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 68 NTLFSKLQINQSIIFCNSTQRVELLAKKI----TELGYCCYYIHAR-----MAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 68 ~~ll~~~~~~~~lIF~~t~~~~~~~~~~L----~~~~~~v~~~h~~-----~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.-++.......++|.++++.-|...++++ +..|..|....++ +.+++|... ...+|+++|+
T Consensus 103 pa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~------y~~dIvygTp 172 (762)
T TIGR03714 103 PLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKI------YNSDIVYTTN 172 (762)
T ss_pred HHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHh------CCCCEEEECc
Confidence 33444545667899999999888888877 4458888887665 555555443 2479999998
No 262
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=87.15 E-value=1.4 Score=32.14 Aligned_cols=38 Identities=13% Similarity=0.358 Sum_probs=33.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCCCH
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMAQ 112 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~~~ 112 (140)
+.+++++||.+-..++..+.+|++.|+ +|..+.|++..
T Consensus 170 kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~ 208 (314)
T PRK00142 170 KDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIIT 208 (314)
T ss_pred CcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHH
Confidence 567899999999999999999999999 49999999764
No 263
>KOG4284|consensus
Probab=87.14 E-value=1.3 Score=35.65 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=46.7
Q ss_pred hhCCCCcEEEEeCchHHHHHHHHHHHhc-----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 72 SKLQINQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 72 ~~~~~~~~lIF~~t~~~~~~~~~~L~~~-----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+....+.+|.++|++-+-.+.+-+++. |.+|..|-||.+.. .+.-+..+++|+|.|+
T Consensus 89 ~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~-----~d~~rlk~~rIvIGtP 151 (980)
T KOG4284|consen 89 SRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHK-----LDLIRLKQTRIVIGTP 151 (980)
T ss_pred cccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhh-----hhhhhhhhceEEecCc
Confidence 3334567899999999999999988875 66899999998744 5566667889999998
No 264
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=87.14 E-value=6.9 Score=26.11 Aligned_cols=55 Identities=5% Similarity=0.033 Sum_probs=38.3
Q ss_pred cEEEEeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 78 QSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
++-++-.+...+++.++.|++. ++++..+||-.++++...+.++.+...-++|+.
T Consensus 50 ~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~V 106 (177)
T TIGR00696 50 PIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFV 106 (177)
T ss_pred eEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEE
Confidence 4444456677778888888765 666656688887777777788887776776553
No 265
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=87.06 E-value=1.1 Score=27.69 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=29.0
Q ss_pred CCCcEEEEeC-chHHHHHHHHHHHhc------------Cc-eEEEEecCCC
Q psy13287 75 QINQSIIFCN-STQRVELLAKKITEL------------GY-CCYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~-t~~~~~~~~~~L~~~------------~~-~v~~~h~~~~ 111 (140)
+..++++||. +-..+...+..|+.. |+ ++..+.|++.
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 3567889996 877888888888874 65 6999999864
No 266
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=86.88 E-value=1.5 Score=26.32 Aligned_cols=35 Identities=11% Similarity=0.320 Sum_probs=27.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARM 110 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~ 110 (140)
..++++||++-..+...+..|++.|+.....-|++
T Consensus 58 ~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 92 (101)
T TIGR02981 58 NDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGI 92 (101)
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCH
Confidence 45688999998889899999999998643334774
No 267
>KOG0386|consensus
Probab=86.51 E-value=2.5 Score=35.61 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=67.1
Q ss_pred ccchHHHHHHHHhhCC--CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCc---cEEEEec
Q psy13287 60 ERQKVHCLNTLFSKLQ--INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLC---RNLVCSG 134 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~~--~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~---~vlv~T~ 134 (140)
.+-|.+.|..+|.+++ +.+++.||.-.+-..-+..+|.-.++...-+-|....++|-..++.|..-.. ..|.+|-
T Consensus 708 ~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstr 787 (1157)
T KOG0386|consen 708 VSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTR 787 (1157)
T ss_pred hccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeec
Confidence 4458888999988874 6789999988777778888887778889999999999999999999987443 3578888
Q ss_pred ccCCCC
Q psy13287 135 DSSAMM 140 (140)
Q Consensus 135 ~~~rGl 140 (140)
..+.||
T Consensus 788 agglgl 793 (1157)
T KOG0386|consen 788 AGGLGL 793 (1157)
T ss_pred cccccc
Confidence 888876
No 268
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=86.49 E-value=1.8 Score=35.84 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=31.3
Q ss_pred CccchHHHHHHHHhhC-----------CCCcEEEEeCchHHHHHHHHHHHh
Q psy13287 59 QERQKVHCLNTLFSKL-----------QINQSIIFCNSTQRVELLAKKITE 98 (140)
Q Consensus 59 ~~~~k~~~l~~ll~~~-----------~~~~~lIF~~t~~~~~~~~~~L~~ 98 (140)
++..|...|.++|++. +++++||||+.+++|..+.++|..
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 4567877777777442 356799999999999999999965
No 269
>KOG0951|consensus
Probab=86.48 E-value=12 Score=32.94 Aligned_cols=127 Identities=12% Similarity=0.121 Sum_probs=72.9
Q ss_pred HHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcC---ccchHHH-----HHHHHhhC-C
Q psy13287 5 VISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQ---ERQKVHC-----LNTLFSKL-Q 75 (140)
Q Consensus 5 il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~---~~~k~~~-----l~~ll~~~-~ 75 (140)
|-.++-++.+++.+|..+.+. ++. ..+...-.+...+...+..+...+..+. .+..+.. +..+.+.. .
T Consensus 1282 ia~q~~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~ 1358 (1674)
T KOG0951|consen 1282 IASQLEKKIRVVALSSSLANA-RDL--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGN 1358 (1674)
T ss_pred HHHHHHhheeEEEeehhhccc-hhh--ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcC
Confidence 334444567788888877643 333 2333444555554433332332222222 2222211 22222222 5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh----------------------cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEe
Q psy13287 76 INQSIIFCNSTQRVELLAKKITE----------------------LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS 133 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~----------------------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T 133 (140)
.++++||+++++.|..++-.|-. ...+++.=|-+++......+-.-|..|.+.++|..
T Consensus 1359 ~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s 1438 (1674)
T KOG0951|consen 1359 RKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMS 1438 (1674)
T ss_pred CCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEE
Confidence 67899999999998877654421 01122222889999999999999999999988765
Q ss_pred c
Q psy13287 134 G 134 (140)
Q Consensus 134 ~ 134 (140)
.
T Consensus 1439 ~ 1439 (1674)
T KOG0951|consen 1439 R 1439 (1674)
T ss_pred c
Confidence 4
No 270
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=86.43 E-value=9.4 Score=26.98 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=67.5
Q ss_pred HHHHhhCC-CCCeEEEEEecCchhHHHHHHHhccC-------Cc-----EEE-c---CCcccCCCeEEEEEEcCccchHH
Q psy13287 3 DHVISILP-HERQILLYSATFPLTVKNFMEKHLKD-------PY-----EIN-L---MEELTLKGVTQYYAFVQERQKVH 65 (140)
Q Consensus 3 ~~il~~~~-~~~q~v~~SAT~~~~~~~~~~~~~~~-------~~-----~i~-~---~~~~~~~~i~~~~~~~~~~~k~~ 65 (140)
-.+++.+. .+..++++|+=.| ..+.-..+.+.. .. .+. . ......+-...-+..+.+.+|-.
T Consensus 87 ~~~i~~lq~~~~~v~alT~~~~-~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~ 165 (252)
T PF11019_consen 87 PNIINSLQNKGIPVIALTARGP-NMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGE 165 (252)
T ss_pred HHHHHHHHHCCCcEEEEcCCCh-hhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCCCccHH
Confidence 34555555 3578899999654 333333332221 11 110 0 01223445555666778889999
Q ss_pred HHHHHHhhCCC-CcEEEEe-CchHHHHHHHHHHHhcCceEEEEecC
Q psy13287 66 CLNTLFSKLQI-NQSIIFC-NSTQRVELLAKKITELGYCCYYIHAR 109 (140)
Q Consensus 66 ~l~~ll~~~~~-~~~lIF~-~t~~~~~~~~~~L~~~~~~v~~~h~~ 109 (140)
.|..++...+. .+.|||. ++.+..+.+.+.+.+.++.+.-+|-.
T Consensus 166 ~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt 211 (252)
T PF11019_consen 166 VLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYT 211 (252)
T ss_pred HHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEc
Confidence 99999998853 4467777 77888999999999999987666654
No 271
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=86.22 E-value=2.4 Score=30.25 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=36.1
Q ss_pred HHHHHHHhhC---CCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 65 HCLNTLFSKL---QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 65 ~~l~~ll~~~---~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
+.|..++... +..++++||++-..+..++..|+..|++ +..|.|++.
T Consensus 217 ~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~ 267 (281)
T PRK11493 217 DELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWS 267 (281)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHH
Confidence 4455555443 3457999999999999999999988984 899999843
No 272
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=86.16 E-value=1.5 Score=28.70 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=29.2
Q ss_pred CCCcEEEEeCchH-HHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 75 QINQSIIFCNSTQ-RVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~-~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
+..++++||.+-. .+...+..|+..|+. |..+.|++.
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~ 153 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTD 153 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHH
Confidence 4578999998753 566788888999985 888999853
No 273
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=86.14 E-value=3.4 Score=31.08 Aligned_cols=59 Identities=10% Similarity=0.076 Sum_probs=46.5
Q ss_pred CcEEEE---eCchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 77 NQSIIF---CNSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 77 ~~~lIF---~~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
..+||+ +.|-.+....++.|++.|. .+.+.||-++ +....+.+.|.+|-++-+|+||..
T Consensus 265 r~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi 329 (382)
T PRK06827 265 KDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLV 329 (382)
T ss_pred CEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCC
Confidence 345554 3677888889999998854 5788899988 777777788888989999999953
No 274
>KOG0352|consensus
Probab=86.12 E-value=1.6 Score=33.51 Aligned_cols=59 Identities=12% Similarity=0.209 Sum_probs=52.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC--CccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG--LCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g--~~~vlv~T~ 134 (140)
.+=+|||-+-..-..+--..|.+++.++..+++.|+..+|.+++-++..- .+++|--|+
T Consensus 61 ~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITP 121 (641)
T KOG0352|consen 61 GGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITP 121 (641)
T ss_pred CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEch
Confidence 45689999999999988999999999999999999999999999999864 467777776
No 275
>KOG1015|consensus
Probab=85.82 E-value=5 Score=34.08 Aligned_cols=81 Identities=15% Similarity=0.193 Sum_probs=61.4
Q ss_pred ccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHh----------------------cCceEEEEecCCCHHHH
Q psy13287 60 ERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITE----------------------LGYCCYYIHARMAQAHR 115 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~----------------------~~~~v~~~h~~~~~~~R 115 (140)
.+.|+-.|.++|+.- -..+.|||-+|.....-+..+|.- .|..-+-+-|......|
T Consensus 1124 ~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R 1203 (1567)
T KOG1015|consen 1124 HSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSR 1203 (1567)
T ss_pred cCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHH
Confidence 345777888888643 467899999998888877777742 13346778889999999
Q ss_pred HHHHHHhhcC-C--cc-EEEEecccCCCC
Q psy13287 116 NRVFHDFRSG-L--CR-NLVCSGDSSAMM 140 (140)
Q Consensus 116 ~~~~~~f~~g-~--~~-vlv~T~~~~rGl 140 (140)
..+-++|.+- . .+ .||+|-+++.|+
T Consensus 1204 ~k~~~~FNdp~NlRaRl~LISTRAGsLGi 1232 (1567)
T KOG1015|consen 1204 KKWAEEFNDPTNLRARLFLISTRAGSLGI 1232 (1567)
T ss_pred HHHHHHhcCcccceeEEEEEeeccCcccc
Confidence 9999999752 2 22 599999999886
No 276
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=85.39 E-value=2.3 Score=30.08 Aligned_cols=55 Identities=9% Similarity=0.129 Sum_probs=42.0
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc---CceEEEEecC-CCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL---GYCCYYIHAR-MAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~---~~~v~~~h~~-~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+.+||.|.+.-.|-++...|+.. +..|+-+-+. +.-++....++ .+.+++.|+|+
T Consensus 127 P~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~---~~~~~i~vGTP 185 (252)
T PF14617_consen 127 PHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLK---KTRVHIAVGTP 185 (252)
T ss_pred CEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHH---hCCceEEEeCh
Confidence 45899999999999999999876 2566655555 46666666654 46789999998
No 277
>KOG0346|consensus
Probab=84.82 E-value=3.8 Score=31.52 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=42.6
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc------CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++|-++|++-|..++..+.+. .+++.-+.++++..+ ..-+-.+.-+|+|+|+
T Consensus 94 ~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv----~~~~L~d~pdIvV~TP 153 (569)
T KOG0346|consen 94 PSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSV----NSVALMDLPDIVVATP 153 (569)
T ss_pred ceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHH----HHHHHccCCCeEEeCh
Confidence 35899999999999999888765 456777888888754 3355567889999998
No 278
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=84.64 E-value=3.6 Score=30.09 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=36.3
Q ss_pred HHHHHHHhhC---CCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 65 HCLNTLFSKL---QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 65 ~~l~~ll~~~---~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
+.|.+++... +..++++||++-..+-.++-.|+..|+. +..|.|++.
T Consensus 255 ~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 255 EELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT 305 (320)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH
Confidence 4566666543 4568999999988888888888888985 889999843
No 279
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=84.46 E-value=8.2 Score=31.70 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=48.1
Q ss_pred HHHHHHHHhhCCCCcEEEEeCc----hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNS----TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t----~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...+..++..+...++-|.+.+ +++++++...+...|++|+.+.+++++++|...++ ++|.-+|+
T Consensus 107 vA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY~------~DItYgTn 175 (764)
T PRK12326 107 AGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAYA------CDVTYASV 175 (764)
T ss_pred HHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHc------CCCEEcCC
Confidence 3445556666667777777766 56677777777778999999999999999988875 35655554
No 280
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=84.43 E-value=5.8 Score=25.34 Aligned_cols=52 Identities=10% Similarity=0.083 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCc------eEEEEecCCCHHHHHHHHHHhhcCC-ccEEEEecccCCCC
Q psy13287 89 VELLAKKITELGY------CCYYIHARMAQAHRNRVFHDFRSGL-CRNLVCSGDSSAMM 140 (140)
Q Consensus 89 ~~~~~~~L~~~~~------~v~~~h~~~~~~~R~~~~~~f~~g~-~~vlv~T~~~~rGl 140 (140)
.+.+++.+++.+. ....+.-+.+..+...++++|++.. ..||++|.-++.|+
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGi 62 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGV 62 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecce
Confidence 4455555555432 2334444455556788888888643 36888886666664
No 281
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=84.15 E-value=1.2 Score=26.44 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=26.1
Q ss_pred CCcEEEEeCchHHHHHHHHH-----HHhcCc-eEEEEecCCC
Q psy13287 76 INQSIIFCNSTQRVELLAKK-----ITELGY-CCYYIHARMA 111 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~-----L~~~~~-~v~~~h~~~~ 111 (140)
...+++||.+.......+.. |++.|+ ++..+.|++.
T Consensus 67 ~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 67 DKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp TSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred cccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 45688899666665555554 888888 8999999854
No 282
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=84.09 E-value=7.5 Score=26.92 Aligned_cols=72 Identities=6% Similarity=-0.010 Sum_probs=45.1
Q ss_pred chHHHHHHHHhh-C-CCCcEEEEeCchHHHHHHHHHHHhcCceE---EEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 62 QKVHCLNTLFSK-L-QINQSIIFCNSTQRVELLAKKITELGYCC---YYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 62 ~k~~~l~~ll~~-~-~~~~~lIF~~t~~~~~~~~~~L~~~~~~v---~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...+.|.+++.. . +.+++++++.. ...+.+.+.|++.|+.+ ..|.............+.++++++++++-|+
T Consensus 102 ~~~e~L~~~~~~~~~~~~~vL~~rg~-~~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f~S 178 (240)
T PRK09189 102 GDGVRLAETVAAALAPTARLLYLAGR-PRAPVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVLLYS 178 (240)
T ss_pred CCHHHHHHHHHHhcCCCCcEEEeccC-cccchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEEEeC
Confidence 344555555543 2 34566666654 44489999999998764 3443332333334667888889999887776
No 283
>KOG0351|consensus
Probab=84.02 E-value=3.7 Score=34.59 Aligned_cols=58 Identities=9% Similarity=0.212 Sum_probs=51.6
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC--CccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG--LCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g--~~~vlv~T~ 134 (140)
+-++|--+-..-++.....|...++...+++|++...+|..+++.+.+| .++++-.|+
T Consensus 305 gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred CceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 3467777778888999999988899999999999999999999999999 889988776
No 284
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=83.89 E-value=10 Score=25.06 Aligned_cols=57 Identities=9% Similarity=0.081 Sum_probs=40.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc--CceEEE-EecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL--GYCCYY-IHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~--~~~v~~-~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
..++-++-.+.+.++.+++.|++. ++++.. +||-+..++...+++..+...-++++.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~v 105 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFV 105 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 345556667778888888888765 666544 677777777777888888777777654
No 285
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=83.49 E-value=5.7 Score=21.94 Aligned_cols=55 Identities=7% Similarity=0.085 Sum_probs=35.4
Q ss_pred EEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecc
Q psy13287 79 SIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
.++.|....++..+.+..- .+..+....|.....+....+.++..+ .+|++++|-
T Consensus 2 ~l~ivEg~~da~~~~~~~~-~~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~ 56 (76)
T smart00493 2 VLIIVEGPADAIALEKAGG-FGGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDP 56 (76)
T ss_pred EEEEEcCHHHHHHHHHhcC-CCEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCC
Confidence 4677777777777776653 233555666665555566666666544 578998884
No 286
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=83.47 E-value=10 Score=24.97 Aligned_cols=56 Identities=11% Similarity=0.168 Sum_probs=35.9
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc--CceEE-EEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL--GYCCY-YIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~--~~~v~-~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
.++-++-.+.+.++.+++.|++. ++++. .+||-++..+-..+++..+...-++++.
T Consensus 49 ~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~v 107 (172)
T PF03808_consen 49 KRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFV 107 (172)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 34445556667777777777665 55544 4555566677777777777766666554
No 287
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=83.32 E-value=4 Score=25.43 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=29.4
Q ss_pred CCCcEEEEeCchHH---------HHHHHHHHHh---cCceEEEEecCCC
Q psy13287 75 QINQSIIFCNSTQR---------VELLAKKITE---LGYCCYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~---------~~~~~~~L~~---~~~~v~~~h~~~~ 111 (140)
+..+++|||.+... +..+++.|.+ .+.+|..+.||+.
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~ 122 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFE 122 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHH
Confidence 56789999977665 7788888887 4568999999953
No 288
>KOG0341|consensus
Probab=82.83 E-value=2.3 Score=32.18 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=39.0
Q ss_pred EEEEeCchHHHHHHHHHHH-------hcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 79 SIIFCNSTQRVELLAKKIT-------ELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~-------~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+||.|+|++-|...+..+. +.|+ ++...-|+++-.++..++. . .+.++|+|+
T Consensus 249 gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~---~-GvHivVATP 310 (610)
T KOG0341|consen 249 GLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVR---R-GVHIVVATP 310 (610)
T ss_pred eEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHh---c-CeeEEEcCc
Confidence 7999999998876655544 3354 5777889999887766655 3 489999998
No 289
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=82.26 E-value=1.7 Score=25.81 Aligned_cols=37 Identities=14% Similarity=0.299 Sum_probs=30.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCceEE-EEecCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYCCY-YIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~-~~h~~~~ 111 (140)
..++.+|+|.+-......++.|++.|+... .+.|++.
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~ 97 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGID 97 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHH
Confidence 357789999999999999999999998775 6777743
No 290
>COG1204 Superfamily II helicase [General function prediction only]
Probab=82.17 E-value=8 Score=31.96 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=44.8
Q ss_pred HHHHHhhCC--CCcEEEEeCchHHHHHHHHHHH---hcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 67 LNTLFSKLQ--INQSIIFCNSTQRVELLAKKIT---ELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 67 l~~ll~~~~--~~~~lIF~~t~~~~~~~~~~L~---~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+..+++... +++++--|+++.-|++.++.++ ..|++|..++|+.+... + +-++.+|+|+|.
T Consensus 65 ~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~-----~--~l~~~~ViVtT~ 130 (766)
T COG1204 65 LLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDD-----E--RLARYDVIVTTP 130 (766)
T ss_pred HHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccch-----h--hhccCCEEEEch
Confidence 333444443 4678888899999999999998 56999999999987432 1 124568888885
No 291
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=81.95 E-value=2.3 Score=31.55 Aligned_cols=37 Identities=11% Similarity=0.308 Sum_probs=31.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
++.++++||++-..+...+..|+..|+. +..+.|++.
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~ 350 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIE 350 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHH
Confidence 3467899999988999999999999985 888999863
No 292
>PRK15327 type III secretion system needle complex protein PrgH; Provisional
Probab=81.91 E-value=17 Score=27.62 Aligned_cols=64 Identities=9% Similarity=0.077 Sum_probs=48.8
Q ss_pred CccchHHHHHHHHhhC---------CCCcEEEEeCchHHHHHHHHHHHhcCc--eEEEEecCCCHHHHHHHHHHhhcC
Q psy13287 59 QERQKVHCLNTLFSKL---------QINQSIIFCNSTQRVELLAKKITELGY--CCYYIHARMAQAHRNRVFHDFRSG 125 (140)
Q Consensus 59 ~~~~k~~~l~~ll~~~---------~~~~~lIF~~t~~~~~~~~~~L~~~~~--~v~~~h~~~~~~~R~~~~~~f~~g 125 (140)
+++.+...|..+|... ..+.+.|.+++.+++++..+.|.+.++ ++... ...+++.++.+.+..+
T Consensus 167 s~~~~v~tL~~~L~g~~~p~~Il~grD~~iyVLa~~qrd~~W~~Q~L~k~~~~~~v~v~---~~~~~~~~ie~~L~~~ 241 (393)
T PRK15327 167 SPQRQAAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTLWARQSLARGDYDKNARVI---NENEENKRVSTWLDTY 241 (393)
T ss_pred chHHHHHHHHHHhcCCCCceEEEeCCCCcEEEEEccccHhHHHHHHHhhCCCcCceEEe---chHHHHHHHHHHHHhc
Confidence 3445899999999765 256789999999999999999988755 45443 2567788888877766
No 293
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=81.84 E-value=20 Score=26.99 Aligned_cols=71 Identities=6% Similarity=0.115 Sum_probs=45.7
Q ss_pred chHHHHHHHHhhCCCCcEEEEeCc-h---HHHHHHHHHHHhcCceEEEEec---CCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 62 QKVHCLNTLFSKLQINQSIIFCNS-T---QRVELLAKKITELGYCCYYIHA---RMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 62 ~k~~~l~~ll~~~~~~~~lIF~~t-~---~~~~~~~~~L~~~~~~v~~~h~---~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
.....+.+.++.+..++++|.+.. . ...+++.+.|.+.++.+..|.+ +-+.+.=.+..+.++..+.+++|+
T Consensus 17 g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~Iia 94 (383)
T PRK09860 17 DSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVIS 94 (383)
T ss_pred CHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 455666666776655666666532 1 2356777888777877666655 234455666777788888888875
No 294
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=81.63 E-value=12 Score=31.14 Aligned_cols=65 Identities=9% Similarity=0.114 Sum_probs=49.4
Q ss_pred HHHHHHHHhhCCCCcEEEEeCc----hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNS----TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t----~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...+..++......++-|.+.| +++++++...+...|++|+.+.|++++++|...+. ++|.-+|+
T Consensus 109 vA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y~------~dI~Y~t~ 177 (796)
T PRK12906 109 TATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAYN------CDITYSTN 177 (796)
T ss_pred HHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHhc------CCCeecCC
Confidence 5556666777777777777766 66777777888888999999999999999987664 35655554
No 295
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=81.18 E-value=15 Score=25.15 Aligned_cols=49 Identities=8% Similarity=0.149 Sum_probs=34.2
Q ss_pred HHHHHHHHhhCCC--CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH
Q psy13287 64 VHCLNTLFSKLQI--NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH 114 (140)
Q Consensus 64 ~~~l~~ll~~~~~--~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~ 114 (140)
.+...++.+..++ .++-||+|. +.+.+.+.++..+..+..+||+.+++.
T Consensus 39 ~~~a~~i~~~~~~~~~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHG~e~~~~ 89 (207)
T PRK13958 39 ITQIKKLASAVPNHIDKVCVVVNP--DLTTIEHILSNTSINTIQLHGTESIDF 89 (207)
T ss_pred HHHHHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 4445555554543 457799865 566677777778999999999988765
No 296
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=80.98 E-value=6.6 Score=27.74 Aligned_cols=52 Identities=10% Similarity=0.150 Sum_probs=41.7
Q ss_pred CCeEEEEEEcCccch-HHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCc
Q psy13287 49 KGVTQYYAFVQERQK-VHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY 101 (140)
Q Consensus 49 ~~i~~~~~~~~~~~k-~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~ 101 (140)
..+.-.++-++.++. +..+.+.| +.+.+...+|+++.+++++.++.|++.|+
T Consensus 112 ~~~DavfLDlp~Pw~~i~~~~~~L-~~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 112 SDFDAVFLDLPDPWEAIPHAKRAL-KKPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp TSEEEEEEESSSGGGGHHHHHHHE--EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred CcccEEEEeCCCHHHHHHHHHHHH-hcCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 567888888887775 56677777 33467889999999999999999999765
No 297
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=80.78 E-value=7.3 Score=21.33 Aligned_cols=53 Identities=9% Similarity=0.001 Sum_probs=37.7
Q ss_pred EEEEe-CchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC-CccEEE
Q psy13287 79 SIIFC-NSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG-LCRNLV 131 (140)
Q Consensus 79 ~lIF~-~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~vlv 131 (140)
+.+|. +....|..+...|++.++.+..+.-+.+++.+.+..+..... .+..++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 44565 567888899999999999988888887777777666554332 455554
No 298
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=80.65 E-value=7.5 Score=21.37 Aligned_cols=57 Identities=9% Similarity=0.083 Sum_probs=39.9
Q ss_pred cEEEEe-CchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 78 QSIIFC-NSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 78 ~~lIF~-~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
++.+|. ++...|..+.++|.+.++....+.=...++.+.+..+.--.+.+..++.-+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~ 59 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNE 59 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECC
Confidence 455666 558889999999999999888877766666666665554445566665443
No 299
>KOG0384|consensus
Probab=80.15 E-value=8.2 Score=33.42 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=50.2
Q ss_pred HHHHHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhc-CceEEEEecCCCHHHHHHHHHHhhcC-----CccEEEEec
Q psy13287 64 VHCLNTLFSKL-QINQSIIFCNSTQRVELLAKKITEL-GYCCYYIHARMAQAHRNRVFHDFRSG-----LCRNLVCSG 134 (140)
Q Consensus 64 ~~~l~~ll~~~-~~~~~lIF~~t~~~~~~~~~~L~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g-----~~~vlv~T~ 134 (140)
+..|..+.... -.+|.||.++ -.++..+...|..+ .+++..|||++...+-..-.+-+..+ +.++|++|=
T Consensus 407 i~fl~~l~~~~~~~gpflvvvp-lst~~~W~~ef~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTy 483 (1373)
T KOG0384|consen 407 ITFLSYLFHSLQIHGPFLVVVP-LSTITAWEREFETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTY 483 (1373)
T ss_pred HHHHHHHHHhhhccCCeEEEee-hhhhHHHHHHHHHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhh
Confidence 34455555544 4678888776 56777788888766 88999999998777655666666665 578888884
No 300
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=80.13 E-value=6.3 Score=28.82 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=33.7
Q ss_pred CcEEEEeC-chHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhh
Q psy13287 77 NQSIIFCN-STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFR 123 (140)
Q Consensus 77 ~~~lIF~~-t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~ 123 (140)
.+++|||. +-..+...+..|+..|+++..+.|++..= |......+.
T Consensus 75 ~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~aw-~~~~~~~~~ 121 (311)
T TIGR03167 75 PQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYKAY-RRFVIDQLE 121 (311)
T ss_pred CcEEEEECCCChHHHHHHHHHHHcCCCEEEecChHHHH-HHhhhhhhh
Confidence 35999995 56778888999999999999999996432 333334443
No 301
>KOG0386|consensus
Probab=79.87 E-value=4.7 Score=34.07 Aligned_cols=70 Identities=10% Similarity=0.085 Sum_probs=49.5
Q ss_pred HHHHHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 64 VHCLNTLFSKL-QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 64 ~~~l~~ll~~~-~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+..+..++... ..+|-||.+++. ..-.|...+..+...+..+.+.=++++|.......+.|+.+||++|-
T Consensus 431 IsLitYLmE~K~~~GP~LvivPls-tL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTty 501 (1157)
T KOG0386|consen 431 ISLITYLMEHKQMQGPFLIIVPLS-TLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTY 501 (1157)
T ss_pred HHHHHHHHHHcccCCCeEEecccc-ccCCchhhccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeH
Confidence 44455555443 468888888753 34455666767655555555555599999999999999999999984
No 302
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=79.61 E-value=20 Score=25.67 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=49.1
Q ss_pred HHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc-CceEEEEecCCCHH-HHHHHHHHhhcC--CccEEEEe
Q psy13287 65 HCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL-GYCCYYIHARMAQA-HRNRVFHDFRSG--LCRNLVCS 133 (140)
Q Consensus 65 ~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~-~~~v~~~h~~~~~~-~R~~~~~~f~~g--~~~vlv~T 133 (140)
..+.+.+.+ +....++..-+.+..+++++.|++. +..|.++--|++.. +...+.+..+.. .+++||--
T Consensus 20 ~~~A~~lA~-~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 20 AELAKQLAR-RGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred HHHHHHHHH-CCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEEC
Confidence 334555544 3566777788889999999999765 78899999998654 466666666664 78888853
No 303
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=79.58 E-value=15 Score=24.84 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=35.2
Q ss_pred hHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHH
Q psy13287 63 KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHR 115 (140)
Q Consensus 63 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R 115 (140)
..+...++....++..+-||.+. ..+.+.+..+..+..+..+||+.+.+..
T Consensus 36 ~~~~a~~l~~~~~~~~VgVf~~~--~~~~I~~~~~~~~ld~vQLHG~e~~e~~ 86 (197)
T PF00697_consen 36 SPDQARELVSAVPPKIVGVFVNQ--SPEEILEIVEELGLDVVQLHGDESPEYI 86 (197)
T ss_dssp -HHHHHHHHCCSSSSEEEEESSS---HHHHHHHHHHCTESEEEE-SGG-HHHH
T ss_pred CHHHHHHHHHhcCCCEEEEEcCC--CHHHHHHHHHHcCCCEEEECCCCCHHHH
Confidence 35666777766665577788865 6666777788889999999999865543
No 304
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=79.45 E-value=13 Score=25.24 Aligned_cols=63 Identities=8% Similarity=0.086 Sum_probs=43.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH--------HHHHHHHhhcCCc-cEEEEecccCCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH--------RNRVFHDFRSGLC-RNLVCSGDSSAM 139 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~--------R~~~~~~f~~g~~-~vlv~T~~~~rG 139 (140)
.++.|+.+.+.+++..+. ....++-.-+.+||.+++-. -...+++..++++ .|++|||.=..|
T Consensus 78 d~~~icVVe~p~Dv~a~E-~~~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvEG 149 (198)
T COG0353 78 DKSQLCVVEEPKDVLALE-KTGEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVEG 149 (198)
T ss_pred CCceEEEEcchHHHHHHH-HhcccCeeEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCCccc
Confidence 445788888888887763 33344446778887655432 3577888888988 999999954433
No 305
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=79.08 E-value=15 Score=23.81 Aligned_cols=45 Identities=7% Similarity=0.067 Sum_probs=36.6
Q ss_pred cEEEEeCc-------hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHh
Q psy13287 78 QSIIFCNS-------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDF 122 (140)
Q Consensus 78 ~~lIF~~t-------~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f 122 (140)
+++||+.| -..+..+.+.|+..++.+....=+++.+.|+++.+.+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~ 52 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELL 52 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence 35678765 7889999999999999988888888888888877654
No 306
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=78.98 E-value=4.8 Score=24.78 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=29.4
Q ss_pred HHHHHh-cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecc
Q psy13287 93 AKKITE-LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 93 ~~~L~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
+++|++ .|+.|..+..+ +.+.+..+.+.+++|+++.+|.|.-
T Consensus 37 a~~L~~~~Gi~v~~vk~~-~~~g~~~i~~~i~~g~i~~VInt~~ 79 (115)
T cd01422 37 GLLIQEATGLTVNRMKSG-PLGGDQQIGALIAEGEIDAVIFFRD 79 (115)
T ss_pred HHHHHHhhCCcEEEEecC-CCCchhHHHHHHHcCceeEEEEcCC
Confidence 444565 68887766211 1234567999999999999999973
No 307
>PHA02558 uvsW UvsW helicase; Provisional
Probab=78.93 E-value=15 Score=28.64 Aligned_cols=48 Identities=13% Similarity=0.047 Sum_probs=33.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcC----ceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELG----YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~----~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++||.|+|++-++.+.+.|++.+ ..+..+.++.... ....|+|+|.
T Consensus 158 ~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-----------~~~~I~VaT~ 209 (501)
T PHA02558 158 EGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-----------TDAPIVVSTW 209 (501)
T ss_pred CCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-----------CCCCEEEeeH
Confidence 3489999999999999999998763 2343444443321 3357888883
No 308
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=78.44 E-value=19 Score=24.78 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=41.4
Q ss_pred hHHHHHHHHhhCCC-CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHh
Q psy13287 63 KVHCLNTLFSKLQI-NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDF 122 (140)
Q Consensus 63 k~~~l~~ll~~~~~-~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f 122 (140)
..+...++.+..++ ..+-||.|. +.+++.+.+...+.....+||+.+++.-..+-+..
T Consensus 39 s~~~a~~i~~~v~~~~~VgVf~n~--~~~~i~~i~~~~~ld~VQlHG~e~~~~~~~l~~~~ 97 (208)
T COG0135 39 SPEQAREIASAVPKVKVVGVFVNE--SIEEILEIAEELGLDAVQLHGDEDPEYIDQLKEEL 97 (208)
T ss_pred CHHHHHHHHHhCCCCCEEEEECCC--CHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc
Confidence 46777777777764 567788864 44566667777788999999999987655555443
No 309
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=78.28 E-value=5.3 Score=29.93 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=31.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCce--EEEEecCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYC--CYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~--v~~~h~~~~ 111 (140)
+..++++||.+-......++.|++.|++ +..+.|++.
T Consensus 331 ~~~~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 331 DGDNVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CCCcEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 4457999999998899999999999986 688888874
No 310
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=77.71 E-value=12 Score=22.60 Aligned_cols=37 Identities=16% Similarity=0.448 Sum_probs=24.3
Q ss_pred CCCcEEEEeCch-----HHHHHHHHHHHhcCc---eEEEEecCCC
Q psy13287 75 QINQSIIFCNST-----QRVELLAKKITELGY---CCYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~-----~~~~~~~~~L~~~~~---~v~~~h~~~~ 111 (140)
...++++||.+. ..+..+...+++.|+ ++..+-|++.
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~ 109 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIK 109 (113)
T ss_pred CCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhh
Confidence 346788999752 234556666666775 6778888863
No 311
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=77.43 E-value=23 Score=25.11 Aligned_cols=68 Identities=12% Similarity=0.189 Sum_probs=38.3
Q ss_pred HHHHHHHhhCCCCcEEEEe--CchHH-HHHHHHHHHhcCceEEEE---ecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 65 HCLNTLFSKLQINQSIIFC--NSTQR-VELLAKKITELGYCCYYI---HARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 65 ~~l~~ll~~~~~~~~lIF~--~t~~~-~~~~~~~L~~~~~~v~~~---h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
..+-+++++...++.+|.+ ||.+. .+++.+.|+..|+++..+ .++-+.++=.++.+.++..+.+++|+
T Consensus 8 ~~l~~~l~~~~~~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 81 (250)
T PF13685_consen 8 DKLPEILSELGLKKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIG 81 (250)
T ss_dssp GGHHHHHGGGT-SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEE
T ss_pred HHHHHHHHhcCCCcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEE
Confidence 3455666666556777777 33333 467888888888887755 34555555666777776667777665
No 312
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=77.37 E-value=16 Score=24.98 Aligned_cols=36 Identities=6% Similarity=-0.111 Sum_probs=15.5
Q ss_pred HHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 94 KKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 94 ~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
+.|...++....+.+..... ..++.++...+++++.
T Consensus 49 ~~l~~~~~dgii~~~~~~~~---~~~~~~~~~~ipvv~~ 84 (259)
T cd01542 49 ELLARQKVDGIILLATTITD---EHREAIKKLNVPVVVV 84 (259)
T ss_pred HHHHhcCCCEEEEeCCCCCH---HHHHHHhcCCCCEEEE
Confidence 34444555544444332211 3344444444555444
No 313
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=77.36 E-value=11 Score=27.95 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=46.5
Q ss_pred CCcEEEE---eCchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 76 INQSIIF---CNSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 76 ~~~~lIF---~~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
.+.++|. +.|-.+....++.|++.|. .+.+-||=++....+.+.+.+.++-++=+|+||..
T Consensus 218 Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~atHglf~~~a~~~l~~~~~~~~i~~iv~Tnti 284 (332)
T PRK00553 218 NKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLFNKNAIQLFDEAFKKKLIDKLFVSNSI 284 (332)
T ss_pred CCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEEEEeeecCchHHHHHHhccccCCCCEEEEeCCc
Confidence 3445543 4778888899999998865 47888998888776676666677789999999964
No 314
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=77.22 E-value=18 Score=30.46 Aligned_cols=63 Identities=11% Similarity=0.004 Sum_probs=43.4
Q ss_pred HHHHHHhhCCCCcEEEEeCchHHHHHHHHHH----HhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 66 CLNTLFSKLQINQSIIFCNSTQRVELLAKKI----TELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 66 ~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L----~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+--++..+....+.|-+.+..-|.+-++++ ...|++|.++.++++..+|...+ ..+|+.+|+
T Consensus 113 ~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~Y------~~dI~YgT~ 179 (908)
T PRK13107 113 TLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAAY------NADITYGTN 179 (908)
T ss_pred HHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhcC------CCCeEEeCC
Confidence 3344445555566888888866666555555 44599999999999986544332 468999987
No 315
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=77.16 E-value=21 Score=30.20 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=49.8
Q ss_pred HHHHHHHHhhCCCCcEEEEeCc----hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNS----TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t----~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...+..++..+....+-|.+.+ .++++++...++-.|..|++..+++++++|...++ ++|.-+|+
T Consensus 114 ~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~aY~------~DItYgTn 182 (939)
T PRK12902 114 VATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKNYA------CDITYATN 182 (939)
T ss_pred HHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHhcC------CCeEEecC
Confidence 4556667777766666666644 67788888888888999999999999999887664 57777776
No 316
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=76.85 E-value=23 Score=24.80 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=51.4
Q ss_pred cCccchHHHHHHHHhhCCC-CcEEEEeCchHHHHHHHHHHHhcCceE---EEEecCCCHHHHHHHHHHhhcCCccEEEEe
Q psy13287 58 VQERQKVHCLNTLFSKLQI-NQSIIFCNSTQRVELLAKKITELGYCC---YYIHARMAQAHRNRVFHDFRSGLCRNLVCS 133 (140)
Q Consensus 58 ~~~~~k~~~l~~ll~~~~~-~~~lIF~~t~~~~~~~~~~L~~~~~~v---~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T 133 (140)
.+++...+.+...+..... ++-+.+.-+....+.+.+.|...|..+ ..|...-.........+.++.+++++++-|
T Consensus 103 ~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ft 182 (248)
T COG1587 103 IPEDGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFT 182 (248)
T ss_pred CCCccchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEe
Confidence 3444455556666665543 455555656666689999999988864 444444333345566788999999999888
Q ss_pred cc
Q psy13287 134 GD 135 (140)
Q Consensus 134 ~~ 135 (140)
+.
T Consensus 183 S~ 184 (248)
T COG1587 183 SS 184 (248)
T ss_pred CH
Confidence 73
No 317
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=76.78 E-value=14 Score=23.59 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=32.0
Q ss_pred CccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHh
Q psy13287 59 QERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITE 98 (140)
Q Consensus 59 ~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~ 98 (140)
....+...+..++.+. ...+++|+|.+.+.++.+-+.|=.
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~ 51 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWT 51 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcC
Confidence 5566788888888665 577899999999999988888733
No 318
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=76.49 E-value=25 Score=25.04 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=40.9
Q ss_pred cCccchHHHHHHH-HhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEE--EecCCCHHHHHHHHHHh-hcCCccEEEEe
Q psy13287 58 VQERQKVHCLNTL-FSKLQINQSIIFCNSTQRVELLAKKITELGYCCYY--IHARMAQAHRNRVFHDF-RSGLCRNLVCS 133 (140)
Q Consensus 58 ~~~~~k~~~l~~l-l~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~--~h~~~~~~~R~~~~~~f-~~g~~~vlv~T 133 (140)
++.....+-|.++ +...+.++++++.. ...-+.+++.|++.|.+|.. +|-......-......+ .++.+++++-|
T Consensus 119 ~P~~~~se~Ll~l~~~~~~g~~vLi~rg-~~gr~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~l~~~~~~d~i~ft 197 (266)
T PRK08811 119 RPTRMDSEGLLALPLAQAPLQAVGLITA-PGGRGLLAPTLQQRGARILRADVYQRVPLRLRASTLAALSRAAPRSVLALS 197 (266)
T ss_pred CCCCCCcHHHHhChhhhCCCCEEEEEeC-CCcHHHHHHHHHHCCCEEeEEEEEeeeCCCCCHHHHHHHHHhCCCCEEEEC
Confidence 3333334455555 33333444555554 34448999999999886522 23222211111333444 56778888887
Q ss_pred c
Q psy13287 134 G 134 (140)
Q Consensus 134 ~ 134 (140)
+
T Consensus 198 S 198 (266)
T PRK08811 198 S 198 (266)
T ss_pred h
Confidence 5
No 319
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=76.29 E-value=11 Score=24.05 Aligned_cols=52 Identities=10% Similarity=0.053 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCc---cEEEEecc--cCCCC
Q psy13287 89 VELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLC---RNLVCSGD--SSAMM 140 (140)
Q Consensus 89 ~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~---~vlv~T~~--~~rGl 140 (140)
.+.+++.+++.+. ....+.-+.+..+...++++|++..- -+|+++.- ++.|+
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGi 63 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGI 63 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecce
Confidence 4455555554432 12233333333344677777876432 47777764 55553
No 320
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=76.28 E-value=20 Score=23.81 Aligned_cols=116 Identities=15% Similarity=0.212 Sum_probs=58.8
Q ss_pred CHHHHHhhCC-CCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhC--CC
Q psy13287 1 MLDHVISILP-HERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKL--QI 76 (140)
Q Consensus 1 ~l~~il~~~~-~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~ 76 (140)
++.+||+.+. .+.++...|-|-.|.+...+-..++-+ ... .............+ -+..|..-+..+.++. +.
T Consensus 49 dv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~---~~~~~~~~~~~~F~~~eI-~~gsK~~Hf~~i~~~tgI~y 124 (169)
T PF12689_consen 49 DVPEILQELKERGVKLAVASRTDEPDWARELLKLLEID---DADGDGVPLIEYFDYLEI-YPGSKTTHFRRIHRKTGIPY 124 (169)
T ss_dssp THHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C-------------CCECEEEE-SSS-HHHHHHHHHHHH---G
T ss_pred CHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCC---ccccccccchhhcchhhe-ecCchHHHHHHHHHhcCCCh
Confidence 3567777776 367788888887665554444444432 111 11222233333332 3448888888877654 34
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 77 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
..+|.|=+.....+.+. +.|+.+...-.|++.+.=+.-++.|++
T Consensus 125 ~eMlFFDDe~~N~~~v~----~lGV~~v~v~~Glt~~~~~~gL~~~~~ 168 (169)
T PF12689_consen 125 EEMLFFDDESRNIEVVS----KLGVTCVLVPDGLTWDEFERGLEKFRK 168 (169)
T ss_dssp GGEEEEES-HHHHHHHH----TTT-EEEE-SSS--HHHHHHHHHHHHH
T ss_pred hHEEEecCchhcceeeE----ecCcEEEEeCCCCCHHHHHHHHHHHhh
Confidence 55555556666666543 368888888889998877777777764
No 321
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=76.08 E-value=7.7 Score=28.37 Aligned_cols=48 Identities=6% Similarity=0.086 Sum_probs=34.9
Q ss_pred HHHHHHHHhhC---CCCcEEEEeCch-HHHHHHHHHHHhcCc-eEEEEecCCC
Q psy13287 64 VHCLNTLFSKL---QINQSIIFCNST-QRVELLAKKITELGY-CCYYIHARMA 111 (140)
Q Consensus 64 ~~~l~~ll~~~---~~~~~lIF~~t~-~~~~~~~~~L~~~~~-~v~~~h~~~~ 111 (140)
.+.+.+++... +..+++|||.+. ..+-+++..|+..|+ +|..+.|+++
T Consensus 88 ~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~ 140 (320)
T PLN02723 88 EEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLP 140 (320)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHH
Confidence 35566777666 355788998654 345677788999998 5999999854
No 322
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=75.91 E-value=9.3 Score=27.78 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=40.9
Q ss_pred HHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCCCH
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMAQ 112 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~~~ 112 (140)
+.++.+..+...++++..||.---.||+...+|...|+ .|+-++|++-.
T Consensus 160 P~~v~~~~~~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~ 209 (308)
T COG1054 160 PAWVEENLDLLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILK 209 (308)
T ss_pred HHHHHHHHHhccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHH
Confidence 45566666666778999999999999999999999998 59999998654
No 323
>PF13245 AAA_19: Part of AAA domain
Probab=75.56 E-value=5.5 Score=22.51 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=27.1
Q ss_pred CccchHHHHHHHHhhC------CCCcEEEEeCchHHHHHHHHHH
Q psy13287 59 QERQKVHCLNTLFSKL------QINQSIIFCNSTQRVELLAKKI 96 (140)
Q Consensus 59 ~~~~k~~~l~~ll~~~------~~~~~lIF~~t~~~~~~~~~~L 96 (140)
+..-|-..+...+... ++.++++.+.++..++.+.+.+
T Consensus 19 pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 19 PGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4556765544444333 2667899999999999999999
No 324
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=75.48 E-value=15 Score=23.33 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=26.2
Q ss_pred CccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhc
Q psy13287 59 QERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITEL 99 (140)
Q Consensus 59 ~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~ 99 (140)
........+..++.+. ...+++|+|.+.+.++.+-+.|=..
T Consensus 10 ~~~~~~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~ 52 (137)
T PF04364_consen 10 SSDDLERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTF 52 (137)
T ss_dssp S----HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTS
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCC
Confidence 3333356677777655 5778999999999999998888443
No 325
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=75.34 E-value=30 Score=25.52 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=30.3
Q ss_pred hCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhh
Q psy13287 73 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFR 123 (140)
Q Consensus 73 ~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~ 123 (140)
..+++.+||.-....-.....+.|++.|+.+.-..|.--.+.-..+...|+
T Consensus 73 ~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~ 123 (337)
T COG2247 73 ELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFR 123 (337)
T ss_pred hhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHH
Confidence 335666666666666666666666666666666666555555555555553
No 326
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=75.24 E-value=13 Score=21.24 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=17.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELG 100 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~ 100 (140)
.|+.+|++-+.+.|+..+..+...|
T Consensus 47 ~G~avv~~~~~e~ae~~~~~l~~~g 71 (82)
T PF02617_consen 47 EGRAVVGTGSREEAEEYAEKLQRAG 71 (82)
T ss_dssp HSEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred cCCEeeeeCCHHHHHHHHHHHHHHh
Confidence 4567777777777777777776554
No 327
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=74.65 E-value=25 Score=26.47 Aligned_cols=72 Identities=11% Similarity=-0.011 Sum_probs=51.0
Q ss_pred EEEEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhcCCc
Q psy13287 52 TQYYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLC 127 (140)
Q Consensus 52 ~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~ 127 (140)
.+.+..+-+.-|.+.+.+-+... ..+++-|-.+-.+.|-+++..|.+. ++.+..+||+-++. |+ .
T Consensus 118 ~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~--------fr---~ 186 (441)
T COG4098 118 DTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSY--------FR---A 186 (441)
T ss_pred cEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchh--------cc---c
Confidence 33444556666666655555433 3567778888899999999999876 68999999997764 33 3
Q ss_pred cEEEEec
Q psy13287 128 RNLVCSG 134 (140)
Q Consensus 128 ~vlv~T~ 134 (140)
..+|||.
T Consensus 187 plvVaTt 193 (441)
T COG4098 187 PLVVATT 193 (441)
T ss_pred cEEEEeh
Confidence 6777775
No 328
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=74.63 E-value=4.4 Score=29.67 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 111 AQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 111 ~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
+.++|+.+++.+++|.++++|+||.+
T Consensus 219 ~~~d~~~L~~~l~~G~id~~i~SDHa 244 (335)
T cd01294 219 RPEDREALRKAATSGHPKFFLGSDSA 244 (335)
T ss_pred CHHHHHHHHHHHHcCCCCeEEECCCC
Confidence 36789999999999999999999975
No 329
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=74.58 E-value=5.6 Score=29.73 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=29.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARM 110 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~ 110 (140)
+..++++||++-..+...+..|+..|+ ++..+.|++
T Consensus 56 ~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 92 (376)
T PRK08762 56 RDREIVLICASGTRSAHAAATLRELGYTRVASVAGGF 92 (376)
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcH
Confidence 356789999998788888999999998 588888864
No 330
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=74.27 E-value=8.1 Score=27.58 Aligned_cols=48 Identities=8% Similarity=0.078 Sum_probs=33.5
Q ss_pred HHHHHHHHhhC---CCCcEEEEeCchH-HHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 64 VHCLNTLFSKL---QINQSIIFCNSTQ-RVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 64 ~~~l~~ll~~~---~~~~~lIF~~t~~-~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
.+.+.+++... +..+++|||.+.. .+..++..|+..|++ +..+.|+++
T Consensus 72 ~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~ 124 (281)
T PRK11493 72 PETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLA 124 (281)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHH
Confidence 45566666665 4567899998643 456677788888875 888888753
No 331
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=73.88 E-value=8.7 Score=25.39 Aligned_cols=123 Identities=10% Similarity=0.074 Sum_probs=57.5
Q ss_pred HHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCc----ccCC--CeEEEEEEcCccchHHHHHHHHhhCCCCc
Q psy13287 5 VISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEE----LTLK--GVTQYYAFVQERQKVHCLNTLFSKLQINQ 78 (140)
Q Consensus 5 il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~----~~~~--~i~~~~~~~~~~~k~~~l~~ll~~~~~~~ 78 (140)
|.+.+....++-...|++...+....+....+...+.+..+ .... ++.-.-+.+...+-+..|.+. ...++
T Consensus 2 i~~e~~~~~~i~v~~~~~e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a---~~~~~ 78 (176)
T PF06506_consen 2 IAKEYEDEAEIDVIEASLEEAVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVEIPISGFDILRALAKA---KKYGP 78 (176)
T ss_dssp HHCCCTTTSEEEEEE--HHHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEEE---HHHHHHHHHHC---CCCTS
T ss_pred chhhhCCCceEEEEEecHHHHHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEEECCCHhHHHHHHHHH---HhcCC
Confidence 45556556788899999987765444432555444444322 1112 233333333333444444443 22333
Q ss_pred E--E-EEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 79 S--I-IFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 79 ~--l-IF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
- + -|-+....+..+.+.| ...+....++. .++=...+++.+...++++|+..
T Consensus 79 ~Iavv~~~~~~~~~~~~~~ll-~~~i~~~~~~~---~~e~~~~i~~~~~~G~~viVGg~ 133 (176)
T PF06506_consen 79 KIAVVGYPNIIPGLESIEELL-GVDIKIYPYDS---EEEIEAAIKQAKAEGVDVIVGGG 133 (176)
T ss_dssp EEEEEEESS-SCCHHHHHHHH-T-EEEEEEESS---HHHHHHHHHHHHHTT--EEEESH
T ss_pred cEEEEecccccHHHHHHHHHh-CCceEEEEECC---HHHHHHHHHHHHHcCCcEEECCH
Confidence 2 2 3334455577777777 22444445543 44444555566655599998764
No 332
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=73.53 E-value=11 Score=24.17 Aligned_cols=42 Identities=12% Similarity=-0.016 Sum_probs=29.2
Q ss_pred HHHHHHhc-CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 92 LAKKITEL-GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 92 ~~~~L~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+++|++. |+.|..+.++.. .-+..+.+.+++|+++.+|.|.
T Consensus 41 Ta~~L~~~~Gi~v~~vi~~~~-gg~~~i~~~I~~g~i~lVInt~ 83 (142)
T PRK05234 41 TGGLIQEATGLDVTRLLSGPL-GGDQQIGALIAEGKIDMLIFFR 83 (142)
T ss_pred HHHHHHhccCCeeEEEEcCCC-CCchhHHHHHHcCceeEEEEec
Confidence 34556677 887766543211 1235789999999999999986
No 333
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=73.53 E-value=6.1 Score=24.10 Aligned_cols=43 Identities=12% Similarity=0.009 Sum_probs=27.8
Q ss_pred HHHHHHhcCceEEEEe--cCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 92 LAKKITELGYCCYYIH--ARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h--~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+++|++.|+.|..+. .+.+......+.+.+++|+++.+|.|.
T Consensus 35 Ta~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~ 79 (116)
T cd01423 35 TADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLP 79 (116)
T ss_pred HHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECC
Confidence 3455667777665542 221221225788899999999999986
No 334
>PRK01172 ski2-like helicase; Provisional
Probab=73.44 E-value=13 Score=30.10 Aligned_cols=52 Identities=8% Similarity=-0.063 Sum_probs=39.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh---cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITE---LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~---~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+++++.+++++-|.+.++.+++ .|.++....|+.+...+ .+ +..+++|||+
T Consensus 65 ~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-----~~--~~~dIiv~Tp 119 (674)
T PRK01172 65 GLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD-----FI--KRYDVVILTS 119 (674)
T ss_pred CCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh-----hh--ccCCEEEECH
Confidence 56788889999999998888764 47889999998765432 11 3468999997
No 335
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=73.23 E-value=33 Score=24.91 Aligned_cols=68 Identities=12% Similarity=0.017 Sum_probs=54.3
Q ss_pred cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCcc
Q psy13287 61 RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCR 128 (140)
Q Consensus 61 ~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~ 128 (140)
-.-++.+.+.++...-+-.+||++-.-.++.+.+.+..---.+.++.-+.+..+-.++.+..++...+
T Consensus 51 ~PVf~tV~EA~~~~~a~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~ 118 (293)
T COG0074 51 LPVFNTVEEAVKETGANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTR 118 (293)
T ss_pred ccHHHHHHHHHHhhCCCEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCCE
Confidence 34678888888877677899999999999999888865433588999999999888888888765543
No 336
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=72.75 E-value=21 Score=26.57 Aligned_cols=48 Identities=13% Similarity=0.186 Sum_probs=37.1
Q ss_pred CCCcEEEEeC-chHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhh
Q psy13287 75 QINQSIIFCN-STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFR 123 (140)
Q Consensus 75 ~~~~~lIF~~-t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~ 123 (140)
+..+++|||. .-..+..++..|+..|+++..+.|++..- |...++.+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~aw-r~~~~~~~~ 135 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAY-RRFVIDTLE 135 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHH-HHhhHHHHh
Confidence 4567999995 55678888999999999999999997654 455555554
No 337
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=71.97 E-value=34 Score=24.53 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=45.4
Q ss_pred HHHHHHHHhhCCCCcEEEEeCc----hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNS----TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t----~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...+...+..+...++=|.|.+ .++++++...+...|+.+....++++.++|.+.++ .+|.-+|.
T Consensus 106 i~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y~------~dI~Y~t~ 174 (266)
T PF07517_consen 106 IAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAYA------ADIVYGTN 174 (266)
T ss_dssp HHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHHH------SSEEEEEH
T ss_pred HHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHHh------Cccccccc
Confidence 4455556667666777677765 66777787888888999999999999998887765 24555553
No 338
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=71.91 E-value=19 Score=22.00 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=25.7
Q ss_pred CeEEEEEEcCcc----chHHHHHHHHhhCCCCcEEEEeCchHHHHHHHH
Q psy13287 50 GVTQYYAFVQER----QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAK 94 (140)
Q Consensus 50 ~i~~~~~~~~~~----~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~ 94 (140)
++....+.+... +.+..+.+++... ++|+++||-|-..+..+..
T Consensus 57 Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~-~~Pvl~hC~sG~Ra~~l~~ 104 (110)
T PF04273_consen 57 GLQYVHIPVDGGAITEEDVEAFADALESL-PKPVLAHCRSGTRASALWA 104 (110)
T ss_dssp T-EEEE----TTT--HHHHHHHHHHHHTT-TTSEEEE-SCSHHHHHHHH
T ss_pred CCeEEEeecCCCCCCHHHHHHHHHHHHhC-CCCEEEECCCChhHHHHHH
Confidence 555555555432 3466677777774 6799999999877765543
No 339
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=71.59 E-value=6.5 Score=29.63 Aligned_cols=37 Identities=11% Similarity=0.311 Sum_probs=31.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
+..++++||.+-..+...+..|++.|+. +..+.|++.
T Consensus 342 ~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~ 379 (392)
T PRK07878 342 QDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVV 379 (392)
T ss_pred CCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHH
Confidence 3467889999988889999999999984 889999864
No 340
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=71.44 E-value=23 Score=23.13 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=34.2
Q ss_pred EEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHH
Q psy13287 54 YYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKIT 97 (140)
Q Consensus 54 ~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~ 97 (140)
.|+......+...+..|+++. ...+++|.|.+...++.+=+.|=
T Consensus 5 ~FYhL~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LW 50 (154)
T PRK06646 5 SIYQTSDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLW 50 (154)
T ss_pred EEEEeCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhc
Confidence 344457778888899988765 56789999999988888877773
No 341
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=71.40 E-value=23 Score=22.40 Aligned_cols=71 Identities=10% Similarity=-0.047 Sum_probs=46.1
Q ss_pred cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCC
Q psy13287 61 RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAM 139 (140)
Q Consensus 61 ~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rG 139 (140)
....+.|.+...++++ -.+++......+.+...+...+..+..++|. +.+.+-..+.+.+++|+.-....|
T Consensus 33 ~~n~~~L~~q~~~f~p--~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~------~~l~~~~~~~~~D~vv~Ai~G~aG 103 (129)
T PF02670_consen 33 GSNIEKLAEQAREFKP--KYVVIADEEAYEELKKALPSKGPGIEVLSGP------EGLEELAEEPEVDIVVNAIVGFAG 103 (129)
T ss_dssp SSTHHHHHHHHHHHT---SEEEESSHHHHHHHHHHHHHTTSSSEEEESH------HHHHHHHTHTT-SEEEE--SSGGG
T ss_pred CCCHHHHHHHHHHhCC--CEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh------HHHHHHhcCCCCCEEEEeCcccch
Confidence 4456667776666533 3677777888888888887777788888887 233444444788888876655555
No 342
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=70.98 E-value=6.3 Score=23.97 Aligned_cols=43 Identities=12% Similarity=0.097 Sum_probs=28.7
Q ss_pred HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc-CCccEEEEecc
Q psy13287 92 LAKKITELGYCCYYIHARMAQAHRNRVFHDFRS-GLCRNLVCSGD 135 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~-g~~~vlv~T~~ 135 (140)
.+++|++.|++|..+...-. ..+..+.+.+++ |+++.+|.|.-
T Consensus 34 Ta~~L~~~Gi~~~~v~~~~~-~g~~~i~~~i~~~g~idlVIn~~~ 77 (112)
T cd00532 34 TSRVLADAGIPVRAVSKRHE-DGEPTVDAAIAEKGKFDVVINLRD 77 (112)
T ss_pred HHHHHHHcCCceEEEEecCC-CCCcHHHHHHhCCCCEEEEEEcCC
Confidence 34556678888766543211 022468899999 99999999863
No 343
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=70.76 E-value=23 Score=30.43 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=40.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHh-hcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDF-RSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f-~~g~~~vlv~T~ 134 (140)
.+++||.|+. .....|.+.+.+. ..++..+||. ..+|....+.+ ..++.+|+|+|-
T Consensus 219 ~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v~~~~G~--~~eR~~~~~~~~~~~~~dVvITSY 277 (1033)
T PLN03142 219 TGPHMVVAPK-STLGNWMNEIRRFCPVLRAVKFHGN--PEERAHQREELLVAGKFDVCVTSF 277 (1033)
T ss_pred CCCEEEEeCh-HHHHHHHHHHHHHCCCCceEEEeCC--HHHHHHHHHHHhcccCCCcceecH
Confidence 5789999984 5667777788775 5678889996 66666655443 457788888874
No 344
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=70.58 E-value=17 Score=20.56 Aligned_cols=37 Identities=14% Similarity=0.066 Sum_probs=25.2
Q ss_pred cEEEEeC---chHHHHHHHHHHHhcCceEEEEecCCCHHH
Q psy13287 78 QSIIFCN---STQRVELLAKKITELGYCCYYIHARMAQAH 114 (140)
Q Consensus 78 ~~lIF~~---t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~ 114 (140)
+++|.+. ....+..+++.|++.|+++.....+.+...
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~ 42 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGK 42 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Confidence 4444443 245788889999999999888766655443
No 345
>TIGR02554 PrgH type III secretion system protein PrgH/EprH. In Samonella, this gene is part of a four-gene operon PrgHIJK and in general is found in type III secretion operons. PrgH has been shown to be required for secretion, as well as being a structural component of the needle complex.
Probab=70.15 E-value=29 Score=26.37 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=48.1
Q ss_pred cCccchHHHHHHHHhhC---------CCCcEEEEeCchHHHHHHHHHHHhcCc--eEEEEecCCCHHHHHHHHHHhhcCC
Q psy13287 58 VQERQKVHCLNTLFSKL---------QINQSIIFCNSTQRVELLAKKITELGY--CCYYIHARMAQAHRNRVFHDFRSGL 126 (140)
Q Consensus 58 ~~~~~k~~~l~~ll~~~---------~~~~~lIF~~t~~~~~~~~~~L~~~~~--~v~~~h~~~~~~~R~~~~~~f~~g~ 126 (140)
.+...+...|..+|... ..+++.|.+++.+++++..+.|.+.++ ++.... ..+++.++.+.+..+-
T Consensus 161 n~~~~~v~~L~~lL~g~~~p~~il~grDg~iyVla~~qrd~~W~~Q~Llk~~~~e~v~v~~---i~~~~~~i~~~L~~~~ 237 (389)
T TIGR02554 161 NSGQRQLAELNGLLGGAPVRFAVLPGRDGRIYVAAASQRDAEWARQALLRAALPEKIEVAV---IGAERQRVSRWLDEAG 237 (389)
T ss_pred cchhHHHHHHHHHhcCCCCCeEEEeCCCCcEEEEEccccHhHHHHHHHhhcCCCCCeEEec---hHHHHHHHHHHHHhhC
Confidence 44566888899988655 356789999999999999999988643 343322 4566667777777654
No 346
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.91 E-value=31 Score=23.68 Aligned_cols=42 Identities=5% Similarity=-0.054 Sum_probs=19.1
Q ss_pred HHHHHhhCCCCcEEEEeCchHH--HHHHHHHHHhcCceEEEEecC
Q psy13287 67 LNTLFSKLQINQSIIFCNSTQR--VELLAKKITELGYCCYYIHAR 109 (140)
Q Consensus 67 l~~ll~~~~~~~~lIF~~t~~~--~~~~~~~L~~~~~~v~~~h~~ 109 (140)
+.+.+++. ..+++++....+. -..+.+.+...++.-..+.+.
T Consensus 21 i~~~~~~~-g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (263)
T cd06280 21 VEDAAYRA-GLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT 64 (263)
T ss_pred HHHHHHHC-CCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 33334442 3455555432222 223445566666665555553
No 347
>PRK07411 hypothetical protein; Validated
Probab=69.72 E-value=8.5 Score=29.02 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=32.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCH
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQ 112 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~ 112 (140)
+..++++||.+-..+...+..|++.|++...+.|++..
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~G~~~~~l~GG~~~ 378 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEAGIEGTNVKGGITA 378 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCeEEecchHHH
Confidence 35678999999999999999999999987778888543
No 348
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=69.38 E-value=21 Score=26.26 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=42.5
Q ss_pred CCCcEEEE---eCchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 75 QINQSIIF---CNSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 75 ~~~~~lIF---~~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
+...+||. +.|-.+....++.|++.|. .+.+-||=++... ++++.++-++-+|+||..
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHglf~~~a----~~~l~~~~i~~iv~Tdti 279 (320)
T PRK02269 216 KGKKCILIDDMIDTAGTICHAADALAEAGATEVYASCTHPVLSGPA----LDNIQKSAIEKLVVLDTI 279 (320)
T ss_pred CCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEEEEECcccCchH----HHHHHhCCCCEEEEeCCC
Confidence 34445553 4788889999999998865 5788899888754 444555668889999864
No 349
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=68.72 E-value=41 Score=24.24 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy13287 87 QRVELLAKKIT 97 (140)
Q Consensus 87 ~~~~~~~~~L~ 97 (140)
+++.++.+.+.
T Consensus 110 ~ev~e~~~~~~ 120 (274)
T cd01132 110 STVAQVVKTLE 120 (274)
T ss_pred HHHHHHHHHHH
Confidence 33334444443
No 350
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=68.66 E-value=48 Score=25.00 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCceEEEEecCCC
Q psy13287 89 VELLAKKITELGYCCYYIHARMA 111 (140)
Q Consensus 89 ~~~~~~~L~~~~~~v~~~h~~~~ 111 (140)
+-.+|++|++.|..|..+--+++
T Consensus 242 a~tiAEYfrd~G~dVll~~Ds~t 264 (369)
T cd01134 242 GITIAEYFRDMGYNVALMADSTS 264 (369)
T ss_pred HHHHHHHHHHcCCCEEEEEcChh
Confidence 34556666666666655544443
No 351
>KOG1002|consensus
Probab=68.21 E-value=28 Score=27.59 Aligned_cols=65 Identities=6% Similarity=0.175 Sum_probs=44.3
Q ss_pred HHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+..+.-+|......|+||.|+++.-.++.-+.=+.. ..++..|||.- |..-+++|.+ .+++.+|.
T Consensus 219 IQtIaLllae~~ra~tLVvaP~VAlmQW~nEI~~~T~gslkv~~YhG~~----R~~nikel~~--YDvVLTty 285 (791)
T KOG1002|consen 219 IQTIALLLAEVDRAPTLVVAPTVALMQWKNEIERHTSGSLKVYIYHGAK----RDKNIKELMN--YDVVLTTY 285 (791)
T ss_pred HHHHHHHHhccccCCeeEEccHHHHHHHHHHHHHhccCceEEEEEeccc----ccCCHHHhhc--CcEEEEec
Confidence 455666677667788999999998877765554433 46899999973 3344555533 56666664
No 352
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=68.04 E-value=29 Score=22.21 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=45.7
Q ss_pred HHHHHHHHhhC----CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 64 VHCLNTLFSKL----QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 64 ~~~l~~ll~~~----~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...+.++++.. ..+++.|+-.+....+.++..|.+.|..+...|..... +.+.. .+.+++|+..
T Consensus 12 ~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~-----l~~~v--~~ADIVvsAt 79 (140)
T cd05212 12 AKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQ-----LQSKV--HDADVVVVGS 79 (140)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcC-----HHHHH--hhCCEEEEec
Confidence 44556666554 45678898899999999999999999999999976531 11222 3457777765
No 353
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=67.92 E-value=33 Score=23.64 Aligned_cols=36 Identities=6% Similarity=0.109 Sum_probs=17.0
Q ss_pred HHHHHHhcCceEEEEecC-CCHHHHHHHHHHhhcCCccEEE
Q psy13287 92 LAKKITELGYCCYYIHAR-MAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~-~~~~~R~~~~~~f~~g~~~vlv 131 (140)
+-+.+...++....+.+. .+.. .++.+....+++++
T Consensus 47 ~i~~~~~~~vdgii~~~~~~~~~----~~~~~~~~~ipvV~ 83 (268)
T cd06270 47 AIEFLLERRCDALILHSKALSDD----ELIELAAQVPPLVL 83 (268)
T ss_pred HHHHHHHcCCCEEEEecCCCCHH----HHHHHhhCCCCEEE
Confidence 334444556665555443 2321 15555555555444
No 354
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=67.82 E-value=21 Score=20.61 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=33.7
Q ss_pred CCCcEEEEeC------chHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHH
Q psy13287 75 QINQSIIFCN------STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHD 121 (140)
Q Consensus 75 ~~~~~lIF~~------t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~ 121 (140)
...+++||.. ...-|..+.+.|++.++....+.=..+.+.|..+.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~ 58 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEY 58 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHH
Confidence 4578999975 4667889999999998887776655555556555553
No 355
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=67.73 E-value=4.8 Score=18.58 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=9.7
Q ss_pred hcCCccEEEEecc
Q psy13287 123 RSGLCRNLVCSGD 135 (140)
Q Consensus 123 ~~g~~~vlv~T~~ 135 (140)
+.|.+.|+|+|+-
T Consensus 1 r~g~LqI~ISTnG 13 (30)
T PF14824_consen 1 RRGPLQIAISTNG 13 (30)
T ss_dssp --TTEEEEEEESS
T ss_pred CCCCeEEEEECCC
Confidence 4688999999983
No 356
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=67.37 E-value=31 Score=25.12 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=38.7
Q ss_pred eCchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 83 CNSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 83 ~~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
+.|-.+..+.++.|++.|. .+.+.||=++... .+++.+..++-+++||..
T Consensus 221 idTG~Tl~~aa~~Lk~~GA~~V~~~~tHgvfs~~a----~~~l~~~~i~~iv~Tdti 273 (301)
T PRK07199 221 VSTGRTLIEAARQLRAAGAASPDCVVVHALFAGDA----YSALAAAGIARVVSTDTV 273 (301)
T ss_pred cCcHHHHHHHHHHHHHCCCcEEEEEEEeeeCChHH----HHHHHhCCCCEEEEeCCc
Confidence 3778888999999999876 5788899888643 555655568999999954
No 357
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=67.19 E-value=26 Score=25.10 Aligned_cols=75 Identities=13% Similarity=0.059 Sum_probs=48.5
Q ss_pred cCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHh
Q psy13287 47 TLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDF 122 (140)
Q Consensus 47 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f 122 (140)
+..+++.-.+ ..=+.|...|...|....-.-.+.=||--++-+.++..|.+.|+.|...+|....+....+.+-+
T Consensus 40 Pl~G~rIa~c-LHle~kTA~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V~A~~get~eey~~~i~~~L 114 (268)
T PF05221_consen 40 PLKGARIAGC-LHLEAKTAVLAETLKALGAEVRWTGSNPLSTQDDVAAALAEEGIPVFAWKGETDEEYWWCIEKAL 114 (268)
T ss_dssp TTTTEEEEEE-S--SHHHHHHHHHHHHTTEEEEEEESSTTT--HHHHHHHHHTTEEEEE-TT--HHHHHHHHHHCH
T ss_pred CCCCCEEEEE-EechHHHHHHHHHHHHcCCeEEEecCCCcccchHHHHHhccCCceEEEeCCCCHHHHHHHHHHHh
Confidence 4444444332 24456888888888886444445556667888899999999999999999998777766666555
No 358
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=67.11 E-value=16 Score=19.03 Aligned_cols=52 Identities=6% Similarity=0.014 Sum_probs=38.1
Q ss_pred EEEe-CchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 80 IIFC-NSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 80 lIF~-~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
++|. ++...|..+.+.|++.|++...+.=+.+.+.|..+.+.........++
T Consensus 2 ~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~ 54 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVF 54 (60)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEE
T ss_pred EEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEE
Confidence 3455 567889999999999999988888887777777777765434444443
No 359
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=66.83 E-value=43 Score=26.04 Aligned_cols=62 Identities=8% Similarity=0.117 Sum_probs=38.9
Q ss_pred HHHHHHHhhCCCCcEEEEeCchHH-----------HHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCC
Q psy13287 65 HCLNTLFSKLQINQSIIFCNSTQR-----------VELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGL 126 (140)
Q Consensus 65 ~~l~~ll~~~~~~~~lIF~~t~~~-----------~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~ 126 (140)
+.+...+......+++||+++-++ +-.+|++|++.|..|..+.-+++.-.+....=....|+
T Consensus 218 e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~rEisl~~ge 290 (455)
T PRK07960 218 DFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGE 290 (455)
T ss_pred HHHHhhcCcCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecchhHHHHHHHHHHHhcCC
Confidence 333344433334567888876443 55678888888888888887777666555555554454
No 360
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=66.77 E-value=52 Score=24.72 Aligned_cols=69 Identities=9% Similarity=0.064 Sum_probs=45.2
Q ss_pred hHHHHHHHHhhCCCCcEEEEeCch----HHHHHHHHHHHhcCceEEEEecCC---CHHHHHHHHHHhhcCCccEEEE
Q psy13287 63 KVHCLNTLFSKLQINQSIIFCNST----QRVELLAKKITELGYCCYYIHARM---AQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 63 k~~~l~~ll~~~~~~~~lIF~~t~----~~~~~~~~~L~~~~~~v~~~h~~~---~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
..+.+.++++... ++++|.+... ...+++.+.|.+.++.+..|-+.. +..+-.+..+.++..+.+.+|+
T Consensus 10 ~l~~l~~~~~~~g-~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIa 85 (386)
T cd08191 10 QRRQLPRLAARLG-SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIG 85 (386)
T ss_pred HHHHHHHHHHHcC-CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 4455666676655 6777777432 245667778888888887765543 2444445567777888888886
No 361
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=66.60 E-value=52 Score=24.61 Aligned_cols=71 Identities=11% Similarity=0.169 Sum_probs=46.5
Q ss_pred chHHHHHHHHhhCCCCcEEEEeCch--H--HHHHHHHHHHhcCceEEEEec---CCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 62 QKVHCLNTLFSKLQINQSIIFCNST--Q--RVELLAKKITELGYCCYYIHA---RMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 62 ~k~~~l~~ll~~~~~~~~lIF~~t~--~--~~~~~~~~L~~~~~~v~~~h~---~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
.....+.+.++....++++|++... + ..+.+.+.|.+.++.+..+.+ +-+.+.=.+..+.++..+.+.+|+
T Consensus 9 g~~~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 86 (375)
T cd08194 9 GAVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIA 86 (375)
T ss_pred CHHHHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 4455666666655556777777431 1 346778888888887766644 334555667777888888888875
No 362
>KOG0383|consensus
Probab=66.57 E-value=5.1 Score=32.57 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=60.8
Q ss_pred chHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc---CCccEEEEeccc
Q psy13287 62 QKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS---GLCRNLVCSGDS 136 (140)
Q Consensus 62 ~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~---g~~~vlv~T~~~ 136 (140)
.|...|.+.++++ ...+++||..-....+-+..++...+ ....+.|.....+|+..+++|.. .+...|.||-+.
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 4566666666666 35689999988888888888887777 88999999999999999999983 456678999865
Q ss_pred CCC
Q psy13287 137 SAM 139 (140)
Q Consensus 137 ~rG 139 (140)
+.|
T Consensus 694 g~g 696 (696)
T KOG0383|consen 694 GLG 696 (696)
T ss_pred cCC
Confidence 544
No 363
>PRK05451 dihydroorotase; Provisional
Probab=66.18 E-value=8.6 Score=28.40 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHhhcCCccEEEEecccC
Q psy13287 111 AQAHRNRVFHDFRSGLCRNLVCSGDSS 137 (140)
Q Consensus 111 ~~~~R~~~~~~f~~g~~~vlv~T~~~~ 137 (140)
+.++|+..++.+++|.++++|+||.+-
T Consensus 225 ~~~d~~aLw~~l~~G~Id~~i~SDHaP 251 (345)
T PRK05451 225 RETHRQALREAATSGNPKFFLGTDSAP 251 (345)
T ss_pred CHHHHHHHHHHHHcCCCCEEEeCCCCC
Confidence 467899999999999999999999763
No 364
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=66.11 E-value=54 Score=24.62 Aligned_cols=70 Identities=7% Similarity=0.111 Sum_probs=43.8
Q ss_pred hHHHHHHHHhhC---CCCcEEEEeCch--HH---HHHHHHHHHhcCceEEEEecCC---CHHHHHHHHHHhhcCCccEEE
Q psy13287 63 KVHCLNTLFSKL---QINQSIIFCNST--QR---VELLAKKITELGYCCYYIHARM---AQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 63 k~~~l~~ll~~~---~~~~~lIF~~t~--~~---~~~~~~~L~~~~~~v~~~h~~~---~~~~R~~~~~~f~~g~~~vlv 131 (140)
..+.+.+.++.. ..++++|.+... +. .+.+.+.|.+.++.+..+.+.- +.+.=.+..+.++..+.+++|
T Consensus 10 ~~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~II 89 (383)
T cd08186 10 AIEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVI 89 (383)
T ss_pred HHHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 345555666654 335777777432 11 3677788887787776665432 445566677777777788777
Q ss_pred E
Q psy13287 132 C 132 (140)
Q Consensus 132 ~ 132 (140)
+
T Consensus 90 a 90 (383)
T cd08186 90 A 90 (383)
T ss_pred E
Confidence 5
No 365
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=66.10 E-value=39 Score=26.20 Aligned_cols=51 Identities=8% Similarity=0.135 Sum_probs=29.1
Q ss_pred CCcEEEEeCchHH-----------HHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCC
Q psy13287 76 INQSIIFCNSTQR-----------VELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGL 126 (140)
Q Consensus 76 ~~~~lIF~~t~~~-----------~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~ 126 (140)
-.+++++++|-++ +-.+|++|+..|..|..+-=+++.-.+....=....|+
T Consensus 216 l~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfrd~G~~VLl~~DslTR~A~A~REIsl~~ge 277 (444)
T PRK08972 216 RARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGE 277 (444)
T ss_pred cccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChHHHHHHHHHHHHhcCC
Confidence 3566666655433 44567777777777766666665554444443444443
No 366
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.05 E-value=23 Score=29.21 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=34.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+++||.|++...++.|.+.|.+. ...+..++|+.... + .+...|+|+|-
T Consensus 298 ~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~--------~-~~~~~VvVtTY 351 (732)
T TIGR00603 298 KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER--------F-HGEAGVVVSTY 351 (732)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc--------c-ccCCcEEEEEH
Confidence 457999999999999999988875 24577777763211 1 13456777765
No 367
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=65.91 E-value=57 Score=24.84 Aligned_cols=71 Identities=7% Similarity=0.044 Sum_probs=45.3
Q ss_pred hHHHHHHHHhhCCCCcEEEEeCc-hH---HHHHHHHHHHhcCceEEEEec---CCCHHHHHHHHHHhhcCCccEEEEe
Q psy13287 63 KVHCLNTLFSKLQINQSIIFCNS-TQ---RVELLAKKITELGYCCYYIHA---RMAQAHRNRVFHDFRSGLCRNLVCS 133 (140)
Q Consensus 63 k~~~l~~ll~~~~~~~~lIF~~t-~~---~~~~~~~~L~~~~~~v~~~h~---~~~~~~R~~~~~~f~~g~~~vlv~T 133 (140)
..+.+.+++++...++++|.+.. .. ..+.+.+.|.+.|+.+..+.+ .-+.+.=.+..+.+++.+.+++|+-
T Consensus 10 ~~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIai 87 (414)
T cd08190 10 VTAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAV 87 (414)
T ss_pred HHHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 45556666766655677766632 22 246777778777877766643 3344455666777788788888763
No 368
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=65.74 E-value=43 Score=26.10 Aligned_cols=61 Identities=5% Similarity=-0.037 Sum_probs=34.9
Q ss_pred HHHHHHhhCCCCcEEEEeCchHH-----------HHHHHHHHHh-cCceEEEEecCCCHHHHHHHHHHhhcCC
Q psy13287 66 CLNTLFSKLQINQSIIFCNSTQR-----------VELLAKKITE-LGYCCYYIHARMAQAHRNRVFHDFRSGL 126 (140)
Q Consensus 66 ~l~~ll~~~~~~~~lIF~~t~~~-----------~~~~~~~L~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~ 126 (140)
.+.+++...--.+++|+++|-++ +-.+|++|+. .|.+|..+-=+++.-.+....=....|+
T Consensus 191 fi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~ge 263 (463)
T PRK09280 191 LYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGR 263 (463)
T ss_pred HHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHHHHHHhcCC
Confidence 33333333234567777766443 5567778877 7777777766666554444444444444
No 369
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=65.64 E-value=21 Score=19.80 Aligned_cols=52 Identities=13% Similarity=0.055 Sum_probs=35.4
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCceEEEE--ec----------CCCHHHHHHHHHHhhcCCcc
Q psy13287 77 NQSIIFCNSTQRVELLAKKITELGYCCYYI--HA----------RMAQAHRNRVFHDFRSGLCR 128 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~--h~----------~~~~~~R~~~~~~f~~g~~~ 128 (140)
...+|.++|...+....+.|++.|+.+..+ -. ..+.++...+.+-+++.++.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~~~d~~~i~~~l~~~~i~ 65 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALRFEPEDLEKIKEILEENGIE 65 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEEChhhHHHHHHHHHHCCCC
Confidence 346888899999999999999887643221 11 13456667777777766544
No 370
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=65.49 E-value=52 Score=24.43 Aligned_cols=69 Identities=9% Similarity=0.088 Sum_probs=47.6
Q ss_pred hHHHHHHHHhhCCCCcEEEEeCc-hH---HHHHHHHHHHhcCceEEEEe---cCCCHHHHHHHHHHhhcCCccEEEEe
Q psy13287 63 KVHCLNTLFSKLQINQSIIFCNS-TQ---RVELLAKKITELGYCCYYIH---ARMAQAHRNRVFHDFRSGLCRNLVCS 133 (140)
Q Consensus 63 k~~~l~~ll~~~~~~~~lIF~~t-~~---~~~~~~~~L~~~~~~v~~~h---~~~~~~~R~~~~~~f~~g~~~vlv~T 133 (140)
..+.+.+.++... +++|.+.. .. ..+.+...|.+.++.+..+. +.-+.+.=.+..+.+++.+.+.+|+-
T Consensus 10 ~l~~l~~~l~~~g--r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIai 85 (366)
T PF00465_consen 10 ALEELGEELKRLG--RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAI 85 (366)
T ss_dssp GGGGHHHHHHCTT--EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHHhcC--CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEc
Confidence 3555666676663 77777754 11 25677778878888876666 55566677788888888889988874
No 371
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=64.94 E-value=41 Score=22.97 Aligned_cols=39 Identities=8% Similarity=-0.072 Sum_probs=16.5
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
.+.+.+...++.-..+.+..... ..++.+..-.+.+++.
T Consensus 46 ~~~~~l~~~~vdgiii~~~~~~~---~~~~~~~~~~ipvv~~ 84 (268)
T cd01575 46 ELLRTLLSRRPAGLILTGLEHTE---RTRQLLRAAGIPVVEI 84 (268)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCH---HHHHHHHhcCCCEEEE
Confidence 33444444555544444432221 2334444444555543
No 372
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=64.82 E-value=25 Score=24.45 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCceEEEEecCC-CHHHHHHHHHHhhcCCccEEE
Q psy13287 87 QRVELLAKKITELGYCCYYIHARM-AQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 87 ~~~~~~~~~L~~~~~~v~~~h~~~-~~~~R~~~~~~f~~g~~~vlv 131 (140)
...+++..+|.+.+-.|+.+-+.- +.+.|..+++.|++-.+++|+
T Consensus 82 ~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlF 127 (222)
T PF01591_consen 82 EALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLF 127 (222)
T ss_dssp HHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 345566777776666788888865 455577777777766566653
No 373
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=64.80 E-value=40 Score=23.16 Aligned_cols=53 Identities=4% Similarity=-0.110 Sum_probs=24.5
Q ss_pred CCcEEEEeCchHH--HHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 76 INQSIIFCNSTQR--VELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 76 ~~~~lIF~~t~~~--~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
+..+++++..... -....+.|...++.-..+-+..... ..++.+....++++.
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~---~~~~~~~~~~ipvV~ 83 (270)
T cd06296 29 GYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPELTS---AQRAALRRTGIPFVV 83 (270)
T ss_pred CCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCCCh---HHHHHHhcCCCCEEE
Confidence 4555665543222 2233444555566544443332222 235666666666544
No 374
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=64.76 E-value=50 Score=23.79 Aligned_cols=51 Identities=6% Similarity=-0.009 Sum_probs=29.6
Q ss_pred CCcEEEEeCchHH-----------HHHHHHHHHhc-CceEEEEecCCCHHHHHHHHHHhhcCC
Q psy13287 76 INQSIIFCNSTQR-----------VELLAKKITEL-GYCCYYIHARMAQAHRNRVFHDFRSGL 126 (140)
Q Consensus 76 ~~~~lIF~~t~~~-----------~~~~~~~L~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g~ 126 (140)
-.+++|++++-++ +-.+|++|+.. |..|..+.-+++.-.+....=....|+
T Consensus 126 ~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis~~~ge 188 (274)
T cd01133 126 LSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGR 188 (274)
T ss_pred cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHHHHcCC
Confidence 3456666655333 44667777766 777777776666555544444444443
No 375
>PF04763 DUF562: Protein of unknown function (DUF562); InterPro: IPR006850 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=64.66 E-value=35 Score=21.90 Aligned_cols=63 Identities=17% Similarity=0.369 Sum_probs=39.5
Q ss_pred HhhCCCCcEEEEeCc---------hHHHHHHHHHHHhcCc---eEEEEecCC-CHHHHHHHHHHhhcCCccEEEEec
Q psy13287 71 FSKLQINQSIIFCNS---------TQRVELLAKKITELGY---CCYYIHARM-AQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 71 l~~~~~~~~lIF~~t---------~~~~~~~~~~L~~~~~---~v~~~h~~~-~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+.....+.++|-||. ......+.+.|+..|| ++..++.+- .-++|. ++++=.+|+.-.+|+|+
T Consensus 10 ~~de~Ek~vvVv~~~~~~~~~~l~~~s~~~l~~eL~~~GYSylNIfs~~~~~~~V~eR~-~l~~~~~grsFTvI~~e 85 (146)
T PF04763_consen 10 LHDEKEKNVVVVCNHSWPGPESLPPESVSLLIEELEESGYSYLNIFSCSSESMCVKERQ-ILNDDSQGRSFTVILTE 85 (146)
T ss_pred eeccccCcEEEEEeCCcccccCCChHHHHHHHHHHhhcCCceEEEEEEcCCCcchHHHH-HhcCCccCceEEEEEEc
Confidence 334455667777762 4556677888888877 467777654 444443 44444467777777774
No 376
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=64.60 E-value=19 Score=29.03 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=35.8
Q ss_pred HHHHHHHHhhC---CCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecC
Q psy13287 64 VHCLNTLFSKL---QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHAR 109 (140)
Q Consensus 64 ~~~l~~ll~~~---~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~ 109 (140)
.+.+.+++... +..++++||++--.+-.++..|+..|++ +..|-|+
T Consensus 208 ~~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGs 257 (610)
T PRK09629 208 RQDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGS 257 (610)
T ss_pred HHHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCC
Confidence 34566666654 4567999999987777888888888985 8899998
No 377
>PRK13529 malate dehydrogenase; Provisional
Probab=64.49 E-value=15 Score=29.21 Aligned_cols=53 Identities=8% Similarity=0.070 Sum_probs=34.4
Q ss_pred EEEEeCchHHH-HHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 79 SIIFCNSTQRV-ELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 79 ~lIF~~t~~~~-~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
-|||++|..+| +.....+++-. ..|-+--++..=.++++.|...+++++|.||
T Consensus 101 PivYTPTVG~ac~~~s~~~r~p~---Glyis~~d~g~i~~~l~nwp~~~v~viVVTD 154 (563)
T PRK13529 101 PIIYTPTVGEACERFSHIYRRPR---GLFISYDDRDRIEDILQNAPNRDIKLIVVTD 154 (563)
T ss_pred CeeecccHHHHHHHHhhcccCCC---ceEeccCCHHHHHHHHhcCCcccceEEEEeC
Confidence 58999998774 34444444321 2333333455556677778888999999999
No 378
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=64.42 E-value=41 Score=22.98 Aligned_cols=43 Identities=2% Similarity=-0.163 Sum_probs=19.6
Q ss_pred HHHHHhhCCCCcEEEEeCchH--HHHHHHHHHHhcCceEEEEecCC
Q psy13287 67 LNTLFSKLQINQSIIFCNSTQ--RVELLAKKITELGYCCYYIHARM 110 (140)
Q Consensus 67 l~~ll~~~~~~~~lIF~~t~~--~~~~~~~~L~~~~~~v~~~h~~~ 110 (140)
+.+.++.. +.++++++...+ ....+.+.+...++....+.+..
T Consensus 21 i~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~ 65 (267)
T cd06284 21 IEDEAREA-GYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGS 65 (267)
T ss_pred HHHHHHHc-CCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 33333442 345554443222 22344445555666655555543
No 379
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=64.34 E-value=18 Score=20.03 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=19.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh
Q psy13287 76 INQSIIFCNSTQRVELLAKKITE 98 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~ 98 (140)
.+-++|.|.+.+.++.+.++|++
T Consensus 47 dDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 47 DDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp SSEEEEEESTTSHHHHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHh
Confidence 45678999999999999999876
No 380
>KOG0326|consensus
Probab=63.99 E-value=8.6 Score=28.53 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=39.8
Q ss_pred CCCcEEEEeCchHHHHH---HHHHHHhc-CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVEL---LAKKITEL-GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~---~~~~L~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..-|++|.++|++-|-. ++..|.+. ++.|....|+.+.. ..+++- ++.+.++|+|+
T Consensus 152 ~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lr--DDI~Rl--~~~VH~~vgTP 211 (459)
T KOG0326|consen 152 NVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLR--DDIMRL--NQTVHLVVGTP 211 (459)
T ss_pred cceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccc--cceeee--cCceEEEEcCC
Confidence 34589999999997654 45555444 88999999997653 233331 36688999997
No 381
>KOG4439|consensus
Probab=63.98 E-value=18 Score=29.79 Aligned_cols=52 Identities=13% Similarity=0.292 Sum_probs=34.6
Q ss_pred cEEEEeCchHHHH---HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 78 QSIIFCNSTQRVE---LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 78 ~~lIF~~t~~~~~---~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
++||.|+-.--.+ +++..+.+..++|+.|||.-. |..-.+.|+ +.+|+|+|-
T Consensus 385 ~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~---r~i~~~~L~--~YDvViTTY 439 (901)
T KOG4439|consen 385 KTLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNK---REISAKELR--KYDVVITTY 439 (901)
T ss_pred CeEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCcc---ccCCHHHHh--hcceEEEee
Confidence 5999998654444 345556666889999999865 333333342 358888885
No 382
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=63.41 E-value=30 Score=20.72 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=21.7
Q ss_pred CCCcEEEEeC-chHHHH----HHHHHHHh----cCc-eEEEEecCCC
Q psy13287 75 QINQSIIFCN-STQRVE----LLAKKITE----LGY-CCYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~-t~~~~~----~~~~~L~~----~~~-~v~~~h~~~~ 111 (140)
++.++++||+ +...+. .+.+.+.. .|. ++..+.|++.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~ 107 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFN 107 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHH
Confidence 3467888997 323333 33333332 254 6999999864
No 383
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=63.25 E-value=31 Score=22.45 Aligned_cols=26 Identities=8% Similarity=0.114 Sum_probs=21.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELG 100 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~ 100 (140)
...++||-.+|+-.+++++++|+...
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~ 57 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLP 57 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSS
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCC
Confidence 36899999999999999999998764
No 384
>PF13871 Helicase_C_4: Helicase_C-like
Probab=63.04 E-value=9.9 Score=27.39 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=21.5
Q ss_pred HHHHHhhcCCccEEEEecccCCCC
Q psy13287 117 RVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 117 ~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
...+.|.+|+.+|+|.|+.++-|+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGi 75 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGI 75 (278)
T ss_pred HHHHHHhCCCceEEEEeccccccc
Confidence 567799999999999999999885
No 385
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=63.04 E-value=33 Score=21.02 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=25.9
Q ss_pred EEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEE
Q psy13287 79 SIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNL 130 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vl 130 (140)
.+++|-....+..+.+.+.+.|.+..+++++ ....++.+..++..++++
T Consensus 58 lavv~~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 58 LAVVCVPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVI 106 (116)
T ss_dssp EEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEE
T ss_pred EEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEE
Confidence 4455545666666666676778887788877 333455555555555543
No 386
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=62.99 E-value=47 Score=22.85 Aligned_cols=34 Identities=3% Similarity=-0.132 Sum_probs=18.3
Q ss_pred CCcEEEEeCc--hHHHHHHHHHHHhcCceEEEEecC
Q psy13287 76 INQSIIFCNS--TQRVELLAKKITELGYCCYYIHAR 109 (140)
Q Consensus 76 ~~~~lIF~~t--~~~~~~~~~~L~~~~~~v~~~h~~ 109 (140)
..++++++.. .+.-....+.+...++.-..+.+.
T Consensus 29 gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 29 GLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3456666532 233334455566667766666554
No 387
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=62.98 E-value=20 Score=20.97 Aligned_cols=34 Identities=9% Similarity=0.258 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 85 STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 85 t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
|.+.|+.++..++...+.+ .+.++|..++.+...
T Consensus 32 t~~QA~~I~~~lr~k~inI------fn~~~r~~llkeia~ 65 (85)
T PF11116_consen 32 TKKQAEQIANILRGKNINI------FNEQERKKLLKEIAK 65 (85)
T ss_pred CHHHHHHHHHHHhcCCCCC------CCHHHHHHHHHHHHH
Confidence 7899999999999988888 778899998887753
No 388
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=62.66 E-value=42 Score=23.33 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=7.6
Q ss_pred HHHHHhcCceEEEEec
Q psy13287 93 AKKITELGYCCYYIHA 108 (140)
Q Consensus 93 ~~~L~~~~~~v~~~h~ 108 (140)
-+.|...++.-..+.+
T Consensus 50 i~~l~~~~vdgiI~~~ 65 (265)
T cd06354 50 LEQLADAGYDLIVGVG 65 (265)
T ss_pred HHHHHhCCCCEEEEcC
Confidence 3344455555444443
No 389
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=62.65 E-value=11 Score=27.79 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 111 AQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 111 ~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
+.++|+..++.+++|.++++|+||.+
T Consensus 222 ~~~d~~aL~~~l~~G~id~~i~SDHa 247 (341)
T TIGR00856 222 RNIHQQALLELAASGFPKFFLGTDSA 247 (341)
T ss_pred CHHHHHHHHHHHHcCCCCEEEeCCCC
Confidence 46789999999999999998999965
No 390
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=62.57 E-value=63 Score=24.16 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=44.7
Q ss_pred hHHHHHHHHhhCCCCcEEEEeCch--H--HHHHHHHHHHhcCceEEEEe---cCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 63 KVHCLNTLFSKLQINQSIIFCNST--Q--RVELLAKKITELGYCCYYIH---ARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 63 k~~~l~~ll~~~~~~~~lIF~~t~--~--~~~~~~~~L~~~~~~v~~~h---~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
..+.+.++++....++++|.+... + ..+.+.+.|.+.++.+..+. +.-+.+.=.+..+.++..+++.+|+
T Consensus 13 ~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 89 (376)
T cd08193 13 SLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIG 89 (376)
T ss_pred HHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 355566666665556777766432 1 35777778877777765543 2334555566777777888888876
No 391
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=62.46 E-value=22 Score=21.34 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=27.3
Q ss_pred HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 92 LAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+++|++.|+.|..+..-- .....+.+.+++|+++.+|.+.
T Consensus 35 T~~~l~~~gi~~~~v~~~~--~~~~~i~~~i~~~~id~vIn~~ 75 (110)
T cd01424 35 TAKYLQEAGIPVEVVNKVS--EGRPNIVDLIKNGEIQLVINTP 75 (110)
T ss_pred HHHHHHHcCCeEEEEeecC--CCchhHHHHHHcCCeEEEEECC
Confidence 4556777888754443221 1224688889999999999875
No 392
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=62.35 E-value=19 Score=28.99 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=34.2
Q ss_pred HHHHHHHhhC---CCCcEEEEeCch-HHHHHHHHHHHhcCc-eEEEEecCCC
Q psy13287 65 HCLNTLFSKL---QINQSIIFCNST-QRVELLAKKITELGY-CCYYIHARMA 111 (140)
Q Consensus 65 ~~l~~ll~~~---~~~~~lIF~~t~-~~~~~~~~~L~~~~~-~v~~~h~~~~ 111 (140)
+.+.+.+.+. +..+++|||++. ..+-.++..|+..|+ +|..+.|+++
T Consensus 67 ~~l~~~l~~lGI~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~ 118 (610)
T PRK09629 67 ADLEQLFGELGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVL 118 (610)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHH
Confidence 4555666655 456789999865 467788888988887 5889999743
No 393
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=62.34 E-value=64 Score=24.16 Aligned_cols=71 Identities=11% Similarity=0.175 Sum_probs=45.6
Q ss_pred chHHHHHHHHhhCCCCcEEEEeCc-h---HHHHHHHHHHHhcCceEEEEec---CCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 62 QKVHCLNTLFSKLQINQSIIFCNS-T---QRVELLAKKITELGYCCYYIHA---RMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 62 ~k~~~l~~ll~~~~~~~~lIF~~t-~---~~~~~~~~~L~~~~~~v~~~h~---~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
.....+.+.++....++++|.+.. . ...+++.+.|...++.+..+.+ .-+.+.=.+..+.++..+.+.+|+
T Consensus 14 g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 91 (377)
T cd08176 14 GAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIIS 91 (377)
T ss_pred CHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 345556666666554567766633 2 1355777888877887766655 344555566777777778888875
No 394
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=62.05 E-value=26 Score=19.53 Aligned_cols=49 Identities=14% Similarity=-0.036 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCceEEEEecC------CCHHHHHHHHHHhhcCCccEEEEecc
Q psy13287 87 QRVELLAKKITELGYCCYYIHAR------MAQAHRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 87 ~~~~~~~~~L~~~~~~v~~~h~~------~~~~~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
-.+-++|..|.+.+.++..++.+ ++++.+..+.+.+++..+++...+.+
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v 63 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKV 63 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEE
T ss_pred HHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 44567888899999998888874 56788999999999888877765543
No 395
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=62.01 E-value=21 Score=23.83 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=24.0
Q ss_pred CCCcEEEEeCch--HHHHHHHHHHHhcCceEEEEe
Q psy13287 75 QINQSIIFCNST--QRVELLAKKITELGYCCYYIH 107 (140)
Q Consensus 75 ~~~~~lIF~~t~--~~~~~~~~~L~~~~~~v~~~h 107 (140)
.-+++++|++.. +++.++++.|...|+.+..+.
T Consensus 81 ~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 81 ETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 357899999654 467889999999999988887
No 396
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=61.96 E-value=41 Score=21.85 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=47.6
Q ss_pred HHHhhC-CCCCeEEEEEecCchhHHHHHHHhccCCc-EEEcCCcccCCCeEEEEEEcCcc--chHHHHHHH---Hh-hCC
Q psy13287 4 HVISIL-PHERQILLYSATFPLTVKNFMEKHLKDPY-EINLMEELTLKGVTQYYAFVQER--QKVHCLNTL---FS-KLQ 75 (140)
Q Consensus 4 ~il~~~-~~~~q~v~~SAT~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~i~~~~~~~~~~--~k~~~l~~l---l~-~~~ 75 (140)
++++.+ ..+.+++++||++...++..++.+--... .+.... ....+........... .|...+.++ -. ..+
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~~ 174 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL-FDNGGGIFTGRITGSNCGGKAEALKELYIRDEEDID 174 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE-ECTTCCEEEEEEEEEEESHHHHHHHHHHHHHHHTHT
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee-eecccceeeeeECCCCCCcHHHHHHHHHHHhhcCCC
Confidence 555554 35789999999966666666653322221 222211 1112222222222333 488888888 22 345
Q ss_pred CCcEEEEeCchHHHHH
Q psy13287 76 INQSIIFCNSTQRVEL 91 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~ 91 (140)
..+++.+-.+..+...
T Consensus 175 ~~~~~~iGDs~~D~~~ 190 (192)
T PF12710_consen 175 PDRVIAIGDSINDLPM 190 (192)
T ss_dssp CCEEEEEESSGGGHHH
T ss_pred CCeEEEEECCHHHHHH
Confidence 6777888788777654
No 397
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=61.79 E-value=57 Score=25.74 Aligned_cols=39 Identities=5% Similarity=0.117 Sum_probs=23.0
Q ss_pred CCcEEEEeCchHH-----------HHHHHHHHHhcCceEEEEecCCCHHH
Q psy13287 76 INQSIIFCNSTQR-----------VELLAKKITELGYCCYYIHARMAQAH 114 (140)
Q Consensus 76 ~~~~lIF~~t~~~-----------~~~~~~~L~~~~~~v~~~h~~~~~~~ 114 (140)
-.+++|+++|-++ +-.+|++|+..|..|..+.=+++.-.
T Consensus 218 l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLli~DdlTr~A 267 (502)
T PRK09281 218 MEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQA 267 (502)
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCchHHH
Confidence 3456666666544 55666666666666666665555443
No 398
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=61.75 E-value=35 Score=21.92 Aligned_cols=54 Identities=13% Similarity=0.085 Sum_probs=39.8
Q ss_pred EEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc-CCccEEEE
Q psy13287 79 SIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS-GLCRNLVC 132 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~-g~~~vlv~ 132 (140)
+=||..|-+.--.+.+.....|+++.....+-.++.+..+++.++. ++.-++|.
T Consensus 46 V~i~IASgDr~gsl~~lae~~gi~~~rv~a~a~~e~K~~ii~eLkk~~~k~vmVG 100 (152)
T COG4087 46 VDIYIASGDRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIRELKKRYEKVVMVG 100 (152)
T ss_pred heEEEecCCcchHHHHHHHHcCCceeeeecccCHHHHHHHHHHhcCCCcEEEEec
Confidence 4477777666555666666668999999998899999999999984 45555554
No 399
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=61.66 E-value=26 Score=23.01 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=24.2
Q ss_pred CCCcEEEEe---CchHHHHHHHHHHHhcCceEEEEe
Q psy13287 75 QINQSIIFC---NSTQRVELLAKKITELGYCCYYIH 107 (140)
Q Consensus 75 ~~~~~lIF~---~t~~~~~~~~~~L~~~~~~v~~~h 107 (140)
...+++||| |+-.++-.++..|.+.|++|..+.
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEE
Confidence 467789999 445556688999999999877743
No 400
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=60.95 E-value=74 Score=24.43 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=48.0
Q ss_pred CccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHh
Q psy13287 59 QERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDF 122 (140)
Q Consensus 59 ~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f 122 (140)
+=+.|...|..-|....-.-.+.-||--++-++++..|.+.|++|...+|....+....+..-+
T Consensus 44 hl~~~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~l~~~gi~v~a~~~~~~~~y~~~~~~~l 107 (413)
T cd00401 44 HMTVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAAAGIPVFAWKGETLEEYWWCIEQAL 107 (413)
T ss_pred cchHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCceEEEEcCCCHHHHHHHHHHHH
Confidence 4456777777777776555567777778888899999999999999999987776654444443
No 401
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=60.93 E-value=30 Score=25.42 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCceEEEEecCC-CHHHHHHHHHHhhcCCccEEEEec
Q psy13287 87 QRVELLAKKITELGYCCYYIHARM-AQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 87 ~~~~~~~~~L~~~~~~v~~~h~~~-~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+.++-+.+.+++.+.-+..+.|.| +.--|..+-.-.++|-++++|||-
T Consensus 42 ~A~~i~~~ml~d~~~ifL~~tg~mvs~Glr~ii~~Li~~~~VD~iVtTg 90 (312)
T PRK01221 42 RASEILKEMISDADLRFLSFTANLVSTGLRGLIADLIKRGLFNVVITTC 90 (312)
T ss_pred HHHHHHHHHHcCCCeEEEEecchhHHHHHHHHHHHHHHcCCeeEEEeCC
Confidence 334444445544454578899998 555687777777899999999996
No 402
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=60.84 E-value=33 Score=20.43 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHh
Q psy13287 86 TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDF 122 (140)
Q Consensus 86 ~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f 122 (140)
...++++.+.....+..+..+...+++.+...+.+.|
T Consensus 43 ~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~ 79 (95)
T PF13167_consen 43 SGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKAL 79 (95)
T ss_pred hhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHH
Confidence 4557888888888889999999999999988888877
No 403
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=60.39 E-value=65 Score=23.61 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=30.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc-CceEEEEecCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL-GYCCYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~-~~~v~~~h~~~~ 111 (140)
...++++.++++.-++.+++.+... +..+..+||+..
T Consensus 28 ~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~ 65 (358)
T TIGR01587 28 KADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSS 65 (358)
T ss_pred CCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHH
Confidence 4567888889999999999999886 667777888654
No 404
>PLN02522 ATP citrate (pro-S)-lyase
Probab=60.17 E-value=78 Score=25.68 Aligned_cols=67 Identities=6% Similarity=-0.027 Sum_probs=51.5
Q ss_pred chHHHHHHHHhhCC-CCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCCHHHHHHHHHHhhcCCcc
Q psy13287 62 QKVHCLNTLFSKLQ-INQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQAHRNRVFHDFRSGLCR 128 (140)
Q Consensus 62 ~k~~~l~~ll~~~~-~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~~~~R~~~~~~f~~g~~~ 128 (140)
.-++.+.+.+++.+ -+-.+||++-+...+.+.+.+...|++ +.++.++.+.....++.+.-+...++
T Consensus 64 PVf~tv~eA~~~~~~~~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~r 132 (608)
T PLN02522 64 PVHGSIEAACKAHPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKV 132 (608)
T ss_pred cccchHHHHHHhCCCCcEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCE
Confidence 34677888887763 466899999999999999999888886 67788888877666777766665554
No 405
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=59.91 E-value=41 Score=24.76 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=38.3
Q ss_pred eCchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 83 CNSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 83 ~~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
+.|-.+..+.++.|++.|. .+.+-||=++... ++++.+.-++=+++||..
T Consensus 227 idTG~Tl~~aa~~Lk~~GA~~V~~~~THgvfs~~a----~~~l~~s~i~~iv~Tdti 279 (319)
T PRK04923 227 VDTAGTLCAAAAALKQRGALKVVAYITHPVLSGPA----VDNINNSQLDELVVTDTI 279 (319)
T ss_pred cCchHHHHHHHHHHHHCCCCEEEEEEECcccCchH----HHHHhhCCCCEEEEeCCc
Confidence 4778889999999998865 4788899888644 455655668889999854
No 406
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=59.80 E-value=40 Score=21.01 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=17.7
Q ss_pred CchHHHHHHHHHHHhcCceEEEEecCC
Q psy13287 84 NSTQRVELLAKKITELGYCCYYIHARM 110 (140)
Q Consensus 84 ~t~~~~~~~~~~L~~~~~~v~~~h~~~ 110 (140)
||..-|+.+++.|++.|+.+..+.-.-
T Consensus 9 ~te~~A~~ia~~l~~~g~~~~~~~~~~ 35 (143)
T PF00258_consen 9 NTEKMAEAIAEGLRERGVEVRVVDLDD 35 (143)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEGGG
T ss_pred hHHHHHHHHHHHHHHcCCceeeechhh
Confidence 456667777777777777766655543
No 407
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=59.62 E-value=54 Score=22.45 Aligned_cols=54 Identities=9% Similarity=-0.042 Sum_probs=25.3
Q ss_pred CCcEEEEeCch--HHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 76 INQSIIFCNST--QRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 76 ~~~~lIF~~t~--~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
+.+++++.... .......+.|...+.....+-+..... ..++.+++..+.++..
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~---~~~~~l~~~~iPvv~~ 84 (268)
T cd06273 29 GYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDHSP---ALLDLLARRGVPYVAT 84 (268)
T ss_pred CCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCH---HHHHHHHhCCCCEEEE
Confidence 34555544321 222244445555566544444443222 3344566556666554
No 408
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=59.45 E-value=23 Score=22.26 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=27.9
Q ss_pred CCcEEE---EeCchHHHHHHHHHHHhcCceEEEEecCCC
Q psy13287 76 INQSII---FCNSTQRVELLAKKITELGYCCYYIHARMA 111 (140)
Q Consensus 76 ~~~~lI---F~~t~~~~~~~~~~L~~~~~~v~~~h~~~~ 111 (140)
.+++++ |+-..+++..+-..|++.|+.+..+|..+-
T Consensus 54 ~G~A~~~Gd~vll~~EV~pvi~aL~~~GI~vtAlHNH~l 92 (123)
T PF07485_consen 54 DGKAMVMGDFVLLEDEVNPVISALRKNGIEVTALHNHWL 92 (123)
T ss_pred CCcEEEeecEEecHHHHHHHHHHHHHCCceEEEEecccc
Confidence 345554 345688899999999999999999998754
No 409
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.44 E-value=56 Score=22.60 Aligned_cols=38 Identities=8% Similarity=-0.029 Sum_probs=17.4
Q ss_pred HHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 93 AKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 93 ~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
-+.+...+.....+.+.- .+.-...++.++...+++++
T Consensus 48 i~~~~~~~~Dgiii~~~~-~~~~~~~i~~~~~~~iPvV~ 85 (282)
T cd06318 48 VEDLLTRGVNVLIINPVD-PEGLVPAVAAAKAAGVPVVV 85 (282)
T ss_pred HHHHHHcCCCEEEEecCC-ccchHHHHHHHHHCCCCEEE
Confidence 334445566555554432 22112345555555555543
No 410
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=58.63 E-value=46 Score=23.99 Aligned_cols=50 Identities=8% Similarity=0.106 Sum_probs=36.9
Q ss_pred eCchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 83 CNSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 83 ~~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
+.|-.+....++.|++.|. .+...||=.+... ++++.+..++-+++||..
T Consensus 214 i~TG~Tl~~aa~~Lk~~GA~~V~~~~~H~i~~~~a----~~~l~~~~i~~i~~tnti 266 (285)
T PRK00934 214 ISTGGTMATAIKILKEQGAKKVYVACVHPVLVGDA----ILKLYNAGVDEIIVTDTL 266 (285)
T ss_pred cccHHHHHHHHHHHHHCCCCEEEEEEEeeccCcHH----HHHHHhCCCCEEEEcCCC
Confidence 3678889999999998865 5788898777654 344444448899999854
No 411
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=58.50 E-value=62 Score=22.81 Aligned_cols=56 Identities=5% Similarity=0.077 Sum_probs=42.1
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc-CceEE-EEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL-GYCCY-YIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~-~~~v~-~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
.++-++=.+...++++++.|++. ++++. .+||=.++++...++++....+.++|+.
T Consensus 106 ~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~V 163 (243)
T PRK03692 106 TPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVTV 163 (243)
T ss_pred CeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 45555557788889999999654 77754 5667777778788999999888888764
No 412
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=58.47 E-value=71 Score=27.06 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=46.7
Q ss_pred HHHHHHHHhhCCCCcEEEEeCc----hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNS----TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t----~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...+..++..+....+-|.+.+ .++++++...++..|..|+...++++.++|...+. ++|.-+|+
T Consensus 105 ~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~aY~------~DItYgTn 173 (870)
T CHL00122 105 VATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNYL------KDITYVTN 173 (870)
T ss_pred HHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHhcC------CCCEecCC
Confidence 3445555667666667777766 55666666677778999999999999999888775 35555554
No 413
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=58.42 E-value=48 Score=25.64 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=38.5
Q ss_pred eCchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 83 CNSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 83 ~~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
+.|-.+..+.++.|++.|. -+.+-||=++... ++++.+.-++=+|+||..
T Consensus 345 IdTG~Tl~~aa~~Lk~~GA~~V~~~~THglfs~~A----~~rl~~s~i~~IvvTdTI 397 (439)
T PTZ00145 345 IDTSGTLCEAAKQLKKHGARRVFAFATHGLFSGPA----IERIEASPLEEVVVTDTV 397 (439)
T ss_pred eCcHHHHHHHHHHHHHcCCCEEEEEEEcccCChhH----HHHHhcCCCCEEEEeCCC
Confidence 4778888899999998865 4788899888754 455555668889999964
No 414
>PLN02363 phosphoribosylanthranilate isomerase
Probab=58.40 E-value=46 Score=23.70 Aligned_cols=49 Identities=6% Similarity=0.062 Sum_probs=33.6
Q ss_pred HHHHHHHHhhCCC---CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH
Q psy13287 64 VHCLNTLFSKLQI---NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH 114 (140)
Q Consensus 64 ~~~l~~ll~~~~~---~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~ 114 (140)
.+...++.+..++ .++-||++. +.+.+.+.++..+..+..+||+.+.+.
T Consensus 85 ~e~a~~I~~~l~~~~~~~VgVfv~~--~~~~I~~~~~~~~ld~VQLHG~e~~~~ 136 (256)
T PLN02363 85 LSVAKEISQVAREGGAKPVGVFVDD--DANTILRAADSSDLELVQLHGNGSRAA 136 (256)
T ss_pred HHHHHHHHHhccccCccEEEEEeCC--CHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 4555555555532 357788854 444667777778999999999987654
No 415
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=58.35 E-value=57 Score=22.33 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=33.7
Q ss_pred HHHHHHHHhhCC--CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH
Q psy13287 64 VHCLNTLFSKLQ--INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH 114 (140)
Q Consensus 64 ~~~l~~ll~~~~--~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~ 114 (140)
.+...++.+..+ ..++-||.+. +.+.+.+.++..+..+..+||+.+.+.
T Consensus 41 ~~~a~~i~~~~~~~i~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHg~e~~~~ 91 (210)
T PRK01222 41 PEQAAELAAALPPFVKVVGVFVNA--SDEEIDEIVETVPLDLLQLHGDETPEF 91 (210)
T ss_pred HHHHHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 445555555554 3567788864 455566667777999999999988765
No 416
>PRK05922 type III secretion system ATPase; Validated
Probab=58.34 E-value=73 Score=24.65 Aligned_cols=52 Identities=12% Similarity=0.143 Sum_probs=30.6
Q ss_pred CCCcEEEEeCchHH-----------HHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCC
Q psy13287 75 QINQSIIFCNSTQR-----------VELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGL 126 (140)
Q Consensus 75 ~~~~~lIF~~t~~~-----------~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~ 126 (140)
...++++|++|-++ +-.+|++|++.|..|..+-=+++.-.+....=....|+
T Consensus 210 ~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~~VLl~~DslTR~A~A~REisl~~ge 272 (434)
T PRK05922 210 AAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALARGE 272 (434)
T ss_pred cccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCC
Confidence 44566666666442 55677777777777777766666554444444443343
No 417
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=58.23 E-value=58 Score=22.33 Aligned_cols=54 Identities=4% Similarity=-0.108 Sum_probs=23.7
Q ss_pred CCcEEEEeCc--hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEE
Q psy13287 76 INQSIIFCNS--TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNL 130 (140)
Q Consensus 76 ~~~~lIF~~t--~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vl 130 (140)
+.++++++.. ........+.+...+.....+.+..+.... ..++..+...+.++
T Consensus 29 g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~-~~~~~~~~~~ipvV 84 (267)
T cd06322 29 KVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIR-AAIAKAKKAGIPVI 84 (267)
T ss_pred CCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhH-HHHHHHHHCCCCEE
Confidence 3455555432 222233334444556666666553222112 23455555445543
No 418
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=58.23 E-value=58 Score=22.40 Aligned_cols=42 Identities=5% Similarity=-0.001 Sum_probs=19.9
Q ss_pred HHHHHHHhcCceEEEEecCC-CH-HHHHHHHHHhhcCCccEEEE
Q psy13287 91 LLAKKITELGYCCYYIHARM-AQ-AHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~-~~-~~R~~~~~~f~~g~~~vlv~ 132 (140)
++.+.|...++.-..+-+.. +. ..-...++.+....+++++.
T Consensus 46 ~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i 89 (273)
T cd06292 46 DYVEDLLARGVRGVVFISSLHADTHADHSHYERLAERGLPVVLV 89 (273)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEE
Confidence 44555555666544443322 21 12234455565555665443
No 419
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=58.12 E-value=65 Score=22.87 Aligned_cols=14 Identities=7% Similarity=-0.161 Sum_probs=6.4
Q ss_pred HHHHHHHHHhcCce
Q psy13287 89 VELLAKKITELGYC 102 (140)
Q Consensus 89 ~~~~~~~L~~~~~~ 102 (140)
.++..+.|.+.++.
T Consensus 45 ~e~~i~~l~~~~vD 58 (279)
T PF00532_consen 45 KEEYIELLLQRRVD 58 (279)
T ss_dssp HHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhcCCC
Confidence 33444445555554
No 420
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=57.95 E-value=37 Score=20.00 Aligned_cols=38 Identities=8% Similarity=0.028 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhh
Q psy13287 86 TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFR 123 (140)
Q Consensus 86 ~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~ 123 (140)
++.++++...|...++....+.=+++++.|.+..+...
T Consensus 16 k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~ 53 (92)
T cd03030 16 KKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVP 53 (92)
T ss_pred HHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcC
Confidence 67788888899999998888888888999988877653
No 421
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=57.88 E-value=13 Score=26.04 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHhc---CceEEEEecCCCHHHHHHHHHHhhcCC----ccEEEEecccCCCC
Q psy13287 86 TQRVELLAKKITEL---GYCCYYIHARMAQAHRNRVFHDFRSGL----CRNLVCSGDSSAMM 140 (140)
Q Consensus 86 ~~~~~~~~~~L~~~---~~~v~~~h~~~~~~~R~~~~~~f~~g~----~~vlv~T~~~~rGl 140 (140)
...-+++...|.+. ++.+..++|+.+.+. -+|.++. ..|+|+=+.++||+
T Consensus 93 ~~s~~ei~~~l~~~~~~~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGl 149 (239)
T PF10593_consen 93 PPSWEEIKPELPKAISDGIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGL 149 (239)
T ss_pred CcCHHHHHHHHHHHHhcCceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCce
Confidence 34444444444433 699999998866543 4465554 78999999999996
No 422
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=57.85 E-value=81 Score=23.92 Aligned_cols=71 Identities=7% Similarity=-0.004 Sum_probs=48.9
Q ss_pred chHHHHHHHHhhCCCCcEEEEeCc----hHHHHHHHHHHHhcCceEEEEecCC---CHHHHHHHHHHhhcCCccEEEE
Q psy13287 62 QKVHCLNTLFSKLQINQSIIFCNS----TQRVELLAKKITELGYCCYYIHARM---AQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 62 ~k~~~l~~ll~~~~~~~~lIF~~t----~~~~~~~~~~L~~~~~~v~~~h~~~---~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
.....+.+.+.....++++|.+.. ..-.+.+.+.|...++.+..+..-. +-+.=....+.+++.+.+.+|+
T Consensus 15 g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIa 92 (377)
T COG1454 15 GSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIA 92 (377)
T ss_pred ChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 455666776666666788888854 2467788888888887766655532 3344555567888888998887
No 423
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=57.61 E-value=86 Score=24.18 Aligned_cols=60 Identities=10% Similarity=0.071 Sum_probs=42.8
Q ss_pred cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHH
Q psy13287 61 RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFH 120 (140)
Q Consensus 61 ~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~ 120 (140)
..|...+..-|....-.-.+.-||--++-..++..|.+.|+.|...+|....+....+.+
T Consensus 58 ~~~Ta~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~ 117 (425)
T PRK05476 58 TIQTAVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGIPVFAWKGETLEEYWECIER 117 (425)
T ss_pred cccHHHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCceEEecCCCCHHHHHHHHHH
Confidence 456666776676654455667777778888999999999999999988755554443333
No 424
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=57.60 E-value=54 Score=21.77 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=35.7
Q ss_pred HHHHHHHHhhCCCCcEEEEeCc--------hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNS--------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG 125 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t--------~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g 125 (140)
.+++.++-+.....+++|+-|+ ...|+.+.+.| |+++ ..|+...+.-..++++-|...
T Consensus 65 ~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l---gIpv-l~h~~kKP~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 65 AEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKAL---GIPV-LRHRAKKPGCFREILKYFKCQ 130 (168)
T ss_pred HHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhh---CCcE-EEeCCCCCccHHHHHHHHhhc
Confidence 3444444444444579999998 45566666666 5554 345555556667888888643
No 425
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=57.54 E-value=19 Score=24.51 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhh---cC-CccEEEEecc
Q psy13287 90 ELLAKKITELGYCCYYIHARMAQAHRNRVFHDFR---SG-LCRNLVCSGD 135 (140)
Q Consensus 90 ~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~---~g-~~~vlv~T~~ 135 (140)
+..+..+.+.|.++..+..++-........+.++ .. .-+.+||||.
T Consensus 139 ~~~~~~~~~~~~~~c~VSpELh~~~~~~~~~~~~~~~~~~~~~~~~CT~~ 188 (192)
T cd08584 139 NDLILKLLKAGKKICLVSPELHGRDHLAEWEAKQYIEFLKENFDALCTKV 188 (192)
T ss_pred HHHHHHHHHCCcEEEEECHHHcCCChHHHHHHHHhhhhccccCeeEeccC
Confidence 4556667777889888877665444444444444 12 2468999985
No 426
>KOG0336|consensus
Probab=57.44 E-value=71 Score=24.85 Aligned_cols=55 Identities=7% Similarity=0.166 Sum_probs=39.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc---CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL---GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~---~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
....||+.+|++-+..+...-.++ |+.-.+++|+=+. .+-+++++.| ..+++||+
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR---~eqie~lkrg-veiiiatP 351 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNR---NEQIEDLKRG-VEIIIATP 351 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCc---hhHHHHHhcC-ceEEeeCC
Confidence 345899999999988776666555 6666677776553 4556666554 78899987
No 427
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=57.42 E-value=72 Score=25.17 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=23.7
Q ss_pred CCcEEEEeCchHH-----------HHHHHHHHHhcCceEEEEecCCCHHHHH
Q psy13287 76 INQSIIFCNSTQR-----------VELLAKKITELGYCCYYIHARMAQAHRN 116 (140)
Q Consensus 76 ~~~~lIF~~t~~~-----------~~~~~~~L~~~~~~v~~~h~~~~~~~R~ 116 (140)
-.+++|+++|-++ +-.+|++|+..|..|..+.-+++.-.+.
T Consensus 218 l~~tvvV~atsd~p~~~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A 269 (497)
T TIGR03324 218 MDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARA 269 (497)
T ss_pred cceeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcChhHHHHH
Confidence 3456666655443 4456667766666666666665544433
No 428
>KOG0333|consensus
Probab=57.39 E-value=41 Score=26.84 Aligned_cols=55 Identities=9% Similarity=0.190 Sum_probs=42.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhc-CCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRS-GLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~-g~~~vlv~T~ 134 (140)
.++..+|..+|+.-++.+.++=.+. |+++..+-|+++.++ +.|+- .-+.++|+|+
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EE-----q~fqls~gceiviatP 380 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEE-----QGFQLSMGCEIVIATP 380 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhh-----hhhhhhccceeeecCc
Confidence 3556899999999999887765543 889999999999875 34442 2388999997
No 429
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=57.35 E-value=87 Score=24.11 Aligned_cols=104 Identities=21% Similarity=0.243 Sum_probs=53.5
Q ss_pred HHHhhCCC-----CCeEEEEEecCchh--HHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCC
Q psy13287 4 HVISILPH-----ERQILLYSATFPLT--VKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQI 76 (140)
Q Consensus 4 ~il~~~~~-----~~q~v~~SAT~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~ 76 (140)
.++++++. -.++||+|.|+..+ ++......-.+...|+.+.---.. + ++.++.-..++-.-+ .
T Consensus 98 ~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdT----r--~~d~~~~~~vlt~~v----K 167 (429)
T PF10100_consen 98 DVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDT----R--WSDGEQPNRVLTTAV----K 167 (429)
T ss_pred HHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccc----e--eccCCCcceehhhhh----h
Confidence 45566653 36899999999876 444444444455666664210000 0 011111111111111 2
Q ss_pred CcEEEEeC--chHHHHHHHHHHHhcCceEEEEecCCCHHHHHH
Q psy13287 77 NQSIIFCN--STQRVELLAKKITELGYCCYYIHARMAQAHRNR 117 (140)
Q Consensus 77 ~~~lIF~~--t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~ 117 (140)
+++-+-++ ......+++..|.+.|+.+..+-.-+..+.|+.
T Consensus 168 ~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNi 210 (429)
T PF10100_consen 168 KKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNI 210 (429)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhccc
Confidence 22333332 234566788888888888877777666666553
No 430
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=57.34 E-value=43 Score=20.64 Aligned_cols=55 Identities=7% Similarity=-0.027 Sum_probs=36.4
Q ss_pred cEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 78 QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++|-+.+.+.+....+...+.+.++..-.-+.+.++. ..++++.+ ++.++++.|
T Consensus 69 DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~-~~l~~~a~-~~~vl~a~N 123 (124)
T PF01113_consen 69 DVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQI-DELEELAK-KIPVLIAPN 123 (124)
T ss_dssp SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHH-HHHHHHTT-TSEEEE-SS
T ss_pred CEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHHH-HHHHHHhc-cCCEEEeCC
Confidence 36766668888888888888888887777777765554 44444544 388998876
No 431
>PRK06936 type III secretion system ATPase; Provisional
Probab=57.07 E-value=72 Score=24.75 Aligned_cols=25 Identities=8% Similarity=0.119 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCceEEEEecCCCHH
Q psy13287 89 VELLAKKITELGYCCYYIHARMAQA 113 (140)
Q Consensus 89 ~~~~~~~L~~~~~~v~~~h~~~~~~ 113 (140)
+-.+|++|++.|.+|..+-=+++.-
T Consensus 240 a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 240 ATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHcCCCEEEeccchhHH
Confidence 3345555555555555554444433
No 432
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=56.84 E-value=72 Score=23.05 Aligned_cols=25 Identities=16% Similarity=0.017 Sum_probs=11.8
Q ss_pred HHHHHHHHhc-CceEEEEecCCCHHH
Q psy13287 90 ELLAKKITEL-GYCCYYIHARMAQAH 114 (140)
Q Consensus 90 ~~~~~~L~~~-~~~v~~~h~~~~~~~ 114 (140)
-.+|++|+.. |..|..+.=+++.-.
T Consensus 154 ~aiAEyfrd~~g~~VLl~~D~ltr~A 179 (276)
T cd01135 154 LTTAEYLAYEKGKHVLVILTDMTNYA 179 (276)
T ss_pred HHHHHHHHhccCCeEEEEEcChhHHH
Confidence 3445555544 445555544444333
No 433
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=56.79 E-value=62 Score=22.28 Aligned_cols=40 Identities=5% Similarity=-0.022 Sum_probs=18.1
Q ss_pred HHHHHhcCceEEEEecCCCH--HHHHHHHHHhhcCCccEEEE
Q psy13287 93 AKKITELGYCCYYIHARMAQ--AHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 93 ~~~L~~~~~~v~~~h~~~~~--~~R~~~~~~f~~g~~~vlv~ 132 (140)
.+.+...++....+.+..+. ......++.+.+..++++..
T Consensus 48 i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~~~~ipvV~~ 89 (273)
T cd01541 48 LENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEKLGIPYVFI 89 (273)
T ss_pred HHHHHHcCCCEEEEeccccccccccHHHHHHHHHCCCCEEEE
Confidence 34455556655555443221 11223445555555665543
No 434
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=56.55 E-value=89 Score=23.96 Aligned_cols=71 Identities=7% Similarity=-0.005 Sum_probs=48.5
Q ss_pred CccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEE
Q psy13287 59 QERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNL 130 (140)
Q Consensus 59 ~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vl 130 (140)
.=+.|...|...|....-.-.+.-||--++-+.++..|.+.|++|...+|....+.-. -+++....+-+++
T Consensus 40 hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v~a~~~~~~~ey~~-~~~~~l~~~p~~i 110 (406)
T TIGR00936 40 HVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPVFAWRGETNEEYYW-AIEQVLDHEPNII 110 (406)
T ss_pred echHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceEEEecCCCHHHHHH-HHHHHhcCCCCEE
Confidence 3345677777777776555566667766777889999999999999999887765533 3444444444443
No 435
>PRK05370 argininosuccinate synthase; Validated
Probab=56.43 E-value=69 Score=24.87 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=33.4
Q ss_pred HHhhCCCC-cEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCH---HHHHHHHHHhhc
Q psy13287 70 LFSKLQIN-QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQ---AHRNRVFHDFRS 124 (140)
Q Consensus 70 ll~~~~~~-~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~---~~R~~~~~~f~~ 124 (140)
+|++++.+ ++++-..---+..-+..+|++.++.|.+++.++.+ ++...+.++...
T Consensus 4 ~~~~l~~~~KVvLAYSGGLDTSv~l~wL~e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~ 62 (447)
T PRK05370 4 ILKHLPVGQRVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAME 62 (447)
T ss_pred hhhhCCCCCEEEEEecCCchHHHHHHHHHhcCCeEEEEEEECCCCCccchHHHHHHHHH
Confidence 35556433 33333333455556667777778888888888866 455566666554
No 436
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.18 E-value=65 Score=22.49 Aligned_cols=40 Identities=5% Similarity=-0.214 Sum_probs=19.4
Q ss_pred HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 92 LAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
+-+.+...+.....+-+.. ...-...++.++...+++++.
T Consensus 48 ~i~~l~~~~vdgiil~~~~-~~~~~~~~~~~~~~~iPvV~~ 87 (280)
T cd06315 48 ALNQAIALKPDGIVLGGVD-AAELQAELELAQKAGIPVVGW 87 (280)
T ss_pred HHHHHHHcCCCEEEEcCCC-HHHHHHHHHHHHHCCCCEEEe
Confidence 3444555566655554422 221223345555556666554
No 437
>TIGR02679 conserved hypothetical protein TIGR02679. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=56.18 E-value=63 Score=24.55 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=33.4
Q ss_pred EEEcCccchHHHHHHHHhhCCCC-cEEEEeCc--hHHHHHHHHHHHhcCceEEEEecCCCHH
Q psy13287 55 YAFVQERQKVHCLNTLFSKLQIN-QSIIFCNS--TQRVELLAKKITELGYCCYYIHARMAQA 113 (140)
Q Consensus 55 ~~~~~~~~k~~~l~~ll~~~~~~-~~lIF~~t--~~~~~~~~~~L~~~~~~v~~~h~~~~~~ 113 (140)
+..|++..-+..+.+ +..+. ..+|+++- ...+..+-..|.+.|..+ +|||+++..
T Consensus 253 V~vvENp~vf~~~~~---~~~~~~~~lIct~G~p~~a~~~LL~~L~~~g~~l-~YhGDfD~~ 310 (385)
T TIGR02679 253 VYVVENPNVLAIALD---RLGPRCAPLVCTDGQPNAAQIKLLDLLAAAGARL-YYHGDFDWP 310 (385)
T ss_pred EEEEecHHHHHHHHH---hcCCCCceEEECCCcchHHHHHHHHHHHhcCCeE-EEecCCChh
Confidence 555566555544444 33332 24555533 344556677777888887 999999876
No 438
>PF09480 PrgH: Type III secretion system protein PrgH-EprH (PrgH); InterPro: IPR019029 In Salmonella, the gene encoding this protein is part of a four-gene operon PrgHIJK, while in other organisms it is found in type III secretion operons. PrgH has been shown to be required for type III secretion and is a structural component of the needle complex, which is the core component of type III secretion systems. ; GO: 0016021 integral to membrane; PDB: 4A4Y_A 2XXS_A 2Y9J_C 3GR1_F 3GR0_D.
Probab=56.17 E-value=76 Score=24.05 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=41.1
Q ss_pred ccchHHHHHHHHhhC---------CCCcEEEEeCchHHHHHHHHHHHhcCc--eEEEEecCCCHHHHHHHHHHhhc
Q psy13287 60 ERQKVHCLNTLFSKL---------QINQSIIFCNSTQRVELLAKKITELGY--CCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~---------~~~~~lIF~~t~~~~~~~~~~L~~~~~--~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
+..+...|..+|... .++.+.|++++.+++++..+.|.+.++ ++..+.- .+++.++...+.+
T Consensus 153 ~~~~v~~L~~lL~g~~~p~~Il~g~d~~iyVla~~qrd~~W~rQ~L~k~~~~~~v~v~~i---~~e~~~I~~~L~~ 225 (375)
T PF09480_consen 153 DQKQVKTLNELLAGSPSPYTILPGRDGKIYVLASTQRDAEWARQALLKEHYNEPVVVLWI---DQEEKRIESWLSQ 225 (375)
T ss_dssp ----HHHHHHHCGGGTTTEEEEE-TTS-EEEEESSHHHHHHHHHHHHHHTGTTTEEEE-H---HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCCceEEEeCCCccEEEEECcchHHHHHHHHHHhCCCCCceEEech---HHHHHHHHHHHHh
Confidence 334888899998544 345789999999999999999987644 3444432 4556667777755
No 439
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=56.03 E-value=49 Score=20.87 Aligned_cols=58 Identities=12% Similarity=0.177 Sum_probs=39.7
Q ss_pred CcEEEEeCc--hHHHHHHHHHHHhcCceEEEEecCCCHH-HHHHHHHHhh--cCCccEEEEec
Q psy13287 77 NQSIIFCNS--TQRVELLAKKITELGYCCYYIHARMAQA-HRNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t--~~~~~~~~~~L~~~~~~v~~~h~~~~~~-~R~~~~~~f~--~g~~~vlv~T~ 134 (140)
.++++...+ ....+.+...++..+.++.++..++... .-...++.+. .|.++++|...
T Consensus 26 ~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li~~a 88 (167)
T PF00106_consen 26 RVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGPLDILINNA 88 (167)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSSESEEEEEC
T ss_pred eEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 344444444 5777888888888888888888886544 4555555555 57888888654
No 440
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=55.92 E-value=70 Score=22.60 Aligned_cols=67 Identities=9% Similarity=0.069 Sum_probs=42.9
Q ss_pred HHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCc--eEEEEecCCCHHHHHHHHHHhhcCCccEEEEecc
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY--CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~--~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
.+.+.++|... +...-|||.+...+..+.+.+++.|. ++..+--+.+. ..++..++|.+...+.-+-
T Consensus 173 ~~~~~~~L~~~-~~~~ai~~~~d~~a~ga~~al~~~g~~~~i~vvg~d~~~----~~~~~l~~g~i~~~~~q~p 241 (302)
T TIGR02637 173 YQEAQGLLKSY-PNLKGIIAPTTVGIKAAAQAVSDAKLIGKVKLTGLGLPS----EMAKYVKNGTVKAFALWNP 241 (302)
T ss_pred HHHHHHHHHhC-CCccEEEeCCCchHHHHHHHHHhcCCCCCEEEEEcCCcH----HHHHHHhcCccceEEEeCH
Confidence 44556666553 45568888877777888888887764 45455445554 3455566787777766553
No 441
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=55.84 E-value=45 Score=20.32 Aligned_cols=51 Identities=8% Similarity=0.003 Sum_probs=33.4
Q ss_pred CchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC--CccEEEEec
Q psy13287 84 NSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG--LCRNLVCSG 134 (140)
Q Consensus 84 ~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g--~~~vlv~T~ 134 (140)
++...|.+..++|++.|+.+..++-.-.+..+.++.+-+..- ...-|+.|.
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~ 59 (117)
T TIGR01617 7 PNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTR 59 (117)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCC
Confidence 667778888888888888877777665566666665555432 244455553
No 442
>KOG0353|consensus
Probab=55.84 E-value=42 Score=25.67 Aligned_cols=60 Identities=12% Similarity=0.152 Sum_probs=50.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vlv~T~ 134 (140)
.++=+||.|+-..-+|.--..|++.|+....+++..++++-..+....-+ .+.+.+-.|+
T Consensus 133 adg~alvi~plislmedqil~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtp 194 (695)
T KOG0353|consen 133 ADGFALVICPLISLMEDQILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTP 194 (695)
T ss_pred cCCceEeechhHHHHHHHHHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecH
Confidence 35668999999999999999999999999999999999998888888765 4566776665
No 443
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=55.79 E-value=85 Score=23.51 Aligned_cols=70 Identities=11% Similarity=0.035 Sum_probs=44.7
Q ss_pred chHHHHHHHHhhCCCCcEEEEeCch-----HHHHHHHHHHHhcCceEEEEec---CCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 62 QKVHCLNTLFSKLQINQSIIFCNST-----QRVELLAKKITELGYCCYYIHA---RMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 62 ~k~~~l~~ll~~~~~~~~lIF~~t~-----~~~~~~~~~L~~~~~~v~~~h~---~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
.....+.++++... ++++|.+... ...+++.+.|++.++.+..+.+ +-+.+.=.+..+.+++.+.+.+|+
T Consensus 12 g~l~~l~~~~~~~g-~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~Iia 89 (380)
T cd08185 12 GKLNELGEEALKPG-KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVG 89 (380)
T ss_pred CHHHHHHHHHHhcC-CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34555666666644 6788777432 2346778888887887765544 223444556667777788888875
No 444
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=55.73 E-value=65 Score=22.98 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCceEEEEecCC-CHHHHHHHHHHhhcCCccEEEEec
Q psy13287 87 QRVELLAKKITELGYCCYYIHARM-AQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 87 ~~~~~~~~~L~~~~~~v~~~h~~~-~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..+.++++.|...|+++....-=- +.++=.+.++...+. .+++|+|-
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tG 68 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDNPDRIVEALREASER-ADVVITTG 68 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEECC
Confidence 456778888888877764433322 222223333333333 78888775
No 445
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=55.71 E-value=63 Score=24.84 Aligned_cols=29 Identities=7% Similarity=0.087 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCceEEEEecCCCHHHHHH
Q psy13287 89 VELLAKKITELGYCCYYIHARMAQAHRNR 117 (140)
Q Consensus 89 ~~~~~~~L~~~~~~v~~~h~~~~~~~R~~ 117 (140)
+-.+|++|+..|..|..+.=+++.-.+..
T Consensus 218 a~~iAEyfrd~G~~Vll~~DslTr~A~A~ 246 (418)
T TIGR03498 218 ATAIAEYFRDQGKDVLLLMDSVTRFAMAQ 246 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccchhHHHHHH
Confidence 55667777776766666666655444333
No 446
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=55.58 E-value=40 Score=22.34 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 86 TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 86 ~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
....-++|.+|+-.|+.+.+.+..-+. .+..+..++-+|++++|
T Consensus 12 D~mLG~LARwLRllGydt~~~~~~~d~-----~i~~i~~~e~rIllTRD 55 (165)
T COG1656 12 DAMLGKLARWLRLLGYDTVYSSNESDD-----EIILIAKKEGRILLTRD 55 (165)
T ss_pred HHhHHHHHHHHHHcCCceeeeccCCcH-----HHHHHHhcCCeEEEecc
Confidence 344568999999999998888732222 13334444558888887
No 447
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=55.55 E-value=64 Score=22.26 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=9.0
Q ss_pred HHHHHHHhcCceEEEEec
Q psy13287 91 LLAKKITELGYCCYYIHA 108 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~ 108 (140)
.+.+.|...+..-..+.+
T Consensus 47 ~~~~~l~~~~vdgiii~~ 64 (260)
T cd06304 47 PNLRQLAAQGYDLIFGVG 64 (260)
T ss_pred HHHHHHHHcCCCEEEECC
Confidence 444445555665445544
No 448
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=55.24 E-value=45 Score=22.56 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=39.7
Q ss_pred CCCcEEEE---eCchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 75 QINQSIIF---CNSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 75 ~~~~~lIF---~~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
....+||+ +.|-.+.-..++.|++.|- -+.+-||=++... .+.+.+..++=+|+||..
T Consensus 82 ~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A----~~~l~~s~Id~vvvTnTI 145 (184)
T PF14572_consen 82 KGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDA----PERLEESPIDEVVVTNTI 145 (184)
T ss_dssp TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTH----HHHHHHSSESEEEEETTS
T ss_pred cCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchH----HHHHhhcCCeEEEEeccc
Confidence 34445654 4788888889999998865 3677888887754 455566778889999853
No 449
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=55.15 E-value=59 Score=23.78 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=37.2
Q ss_pred CchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 84 NSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 84 ~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
.|-.+....++.|++.|. .+...||=.+... ++++.++.++-+++||..
T Consensus 219 ~TG~T~~~a~~~l~~~Ga~~v~~~~tH~i~~~~a----~~~l~~~~~~~iv~t~ti 270 (309)
T PRK01259 219 DTAGTLCKAAEALKERGAKSVYAYATHPVLSGGA----IERIENSVIDELVVTDSI 270 (309)
T ss_pred CcHHHHHHHHHHHHccCCCEEEEEEEeeeCChHH----HHHHhcCCCCEEEEecCc
Confidence 678888899999988864 5788888877644 445556678999999853
No 450
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=54.98 E-value=65 Score=21.96 Aligned_cols=15 Identities=0% Similarity=-0.172 Sum_probs=6.6
Q ss_pred HHHHHhcCceEEEEe
Q psy13287 93 AKKITELGYCCYYIH 107 (140)
Q Consensus 93 ~~~L~~~~~~v~~~h 107 (140)
-+.+...+..-..+-
T Consensus 48 i~~l~~~~vdgiii~ 62 (260)
T cd06286 48 LELLKTKQVDGLILC 62 (260)
T ss_pred HHHHHHcCCCEEEEe
Confidence 334444455433433
No 451
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=54.93 E-value=78 Score=22.85 Aligned_cols=56 Identities=14% Similarity=-0.015 Sum_probs=38.7
Q ss_pred EEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 79 SIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
-+|+|...+.+..+...+.-. -+...+|..-..+....+++....|+. |.+.||.+
T Consensus 27 d~i~~EDTR~t~kLL~~~~I~-~~~~~~~~hn~~~~~~~l~~~l~~g~~-valvSDAG 82 (276)
T TIGR00096 27 DLFAEEDTRTSKLLLHLGIIA-TPKAFHIDNEFQEKQNLLAAKLEIGNN-IAVSSDAG 82 (276)
T ss_pred CEEEecCchhHHHHHHhcCCC-CceEEEecccHhHHHHHHHHHHHcCCc-EEEEecCC
Confidence 488898888887777666332 245566666666667777787888765 77777753
No 452
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=54.46 E-value=88 Score=24.41 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=13.4
Q ss_pred HHHHHHHHH-hcCceEEEEecCCCHHH
Q psy13287 89 VELLAKKIT-ELGYCCYYIHARMAQAH 114 (140)
Q Consensus 89 ~~~~~~~L~-~~~~~v~~~h~~~~~~~ 114 (140)
+-.+|++|+ +.|.+|..+-=+++.-.
T Consensus 225 a~tiAEyfr~d~G~~VLli~DslTR~A 251 (458)
T TIGR01041 225 ALTAAEYLAFEKDMHVLVILTDMTNYC 251 (458)
T ss_pred HHHHHHHHHHccCCcEEEEEcChhHHH
Confidence 334556665 45555555555544433
No 453
>PRK09492 treR trehalose repressor; Provisional
Probab=54.30 E-value=76 Score=22.51 Aligned_cols=7 Identities=0% Similarity=-0.131 Sum_probs=2.7
Q ss_pred HHhcCce
Q psy13287 96 ITELGYC 102 (140)
Q Consensus 96 L~~~~~~ 102 (140)
|...++.
T Consensus 114 l~~~~vd 120 (315)
T PRK09492 114 LKRRNVD 120 (315)
T ss_pred HHhcCCC
Confidence 3333443
No 454
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=54.22 E-value=55 Score=24.13 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=41.7
Q ss_pred CCcEEEE---eCchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 76 INQSIIF---CNSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 76 ~~~~lIF---~~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
...+||. +.|-.+....++.|++.|. .+.+-||=++... .+++.+.-++-+|+||..
T Consensus 218 gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgif~~~a----~~~l~~s~i~~iv~TdTi 280 (323)
T PRK02458 218 GKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLFAGGA----AEVLENAPIKEILVTDSV 280 (323)
T ss_pred CCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEEEEChhcCchH----HHHHhhCCCCEEEEECCc
Confidence 3445543 4788889999999998854 5888999888754 445655668889999854
No 455
>KOG1180|consensus
Probab=54.17 E-value=68 Score=25.91 Aligned_cols=55 Identities=9% Similarity=0.101 Sum_probs=42.5
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+..||+.|+..=...++---.+++.+...+..+..+ .++.++.+-+...++|.+
T Consensus 116 ~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGee---al~hsl~Et~~~~i~T~~ 170 (678)
T KOG1180|consen 116 TKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEE---ALIHSLNETESTAIFTDS 170 (678)
T ss_pred CeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChh---hhhhhhccccceEEEeCH
Confidence 4589999999876666666667799999999988775 677777777777777754
No 456
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=54.03 E-value=78 Score=22.55 Aligned_cols=37 Identities=5% Similarity=0.029 Sum_probs=16.3
Q ss_pred HHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 94 KKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 94 ~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
+.+...++....+-+... ..-...++.+++..+++++
T Consensus 48 ~~l~~~~vDgIIi~~~~~-~~~~~~l~~~~~~~iPvV~ 84 (302)
T TIGR02634 48 ENLIARGVDVLVIIPQNG-QVLSNAVQEAKDEGIKVVA 84 (302)
T ss_pred HHHHHcCCCEEEEeCCCh-hHHHHHHHHHHHCCCeEEE
Confidence 334444555545544221 1112344555555555543
No 457
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=53.84 E-value=78 Score=24.49 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCceEEEEecCCCHHHH
Q psy13287 89 VELLAKKITELGYCCYYIHARMAQAHR 115 (140)
Q Consensus 89 ~~~~~~~L~~~~~~v~~~h~~~~~~~R 115 (140)
+-.+|++|+..|..|..+-=+++.-.+
T Consensus 233 a~tiAEyfrd~G~~VLl~~Dsltr~A~ 259 (433)
T PRK07594 233 ATTIAEFFRDNGKRVVLLADSLTRYAR 259 (433)
T ss_pred HHHHHHHHHHCCCcEEEEEeCHHHHHH
Confidence 445566666555555555555444333
No 458
>PRK00321 rdgC recombination associated protein; Reviewed
Probab=53.80 E-value=81 Score=23.11 Aligned_cols=45 Identities=4% Similarity=0.059 Sum_probs=35.2
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
+-.+|+..|.+.|+.+...|++. +.++..++-..++.. ++..|-.
T Consensus 134 g~l~VdasS~k~aE~~l~lLrkslgsLpv~p~~~~~~p~~---~mt~WL~ 180 (303)
T PRK00321 134 GLIVVDAASAKKAEDVLALLRKSLGSLPVVPLSTEQSPEA---TMTEWLA 180 (303)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHhcCCCceeccccCCCHHH---HHHHHHc
Confidence 34567778899999999999987 778999999888874 5555543
No 459
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=53.75 E-value=73 Score=25.05 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCceEEEEecCCCHHH
Q psy13287 89 VELLAKKITELGYCCYYIHARMAQAH 114 (140)
Q Consensus 89 ~~~~~~~L~~~~~~v~~~h~~~~~~~ 114 (140)
+-.+|++|+..|..|..+.-+++.-.
T Consensus 221 a~aiAEyfr~~G~~VLlv~DdlTr~A 246 (485)
T CHL00059 221 GAALAEYFMYRGRHTLIIYDDLSKQA 246 (485)
T ss_pred HhhHHHHHHHcCCCEEEEEcChhHHH
Confidence 34456666665556655555554433
No 460
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=53.63 E-value=58 Score=23.35 Aligned_cols=46 Identities=13% Similarity=0.110 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhc-CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 87 QRVELLAKKITEL-GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 87 ~~~~~~~~~L~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+.++++.+.+++. .+=+..+|++.+.+ ...+..|-+|.+.++++|=
T Consensus 131 ~~~d~~i~~lk~~~d~IIVd~HaeatsE--K~a~~~~ldg~vsaVvGtH 177 (266)
T TIGR00282 131 KVLKELINMLKKDCDLIFVDFHAETTSE--KNAFGMAFDGYVTAVVGTH 177 (266)
T ss_pred HHHHHHHHhhhcCCCEEEEEeCCCCHHH--HHHHHHHhCCCccEEEeCC
Confidence 3455555555542 34578899997665 5668899999999999883
No 461
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=53.57 E-value=69 Score=26.53 Aligned_cols=56 Identities=11% Similarity=0.206 Sum_probs=38.9
Q ss_pred HhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 71 FSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 71 l~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
|++..-...|+==.+.+.++.+++.| .+.-+|+++.|+++.+++++++...-+|+.
T Consensus 549 L~~~Gi~~~mLTGDn~~~A~~iA~~l-----GId~v~AellPedK~~~V~~l~~~g~~Vam 604 (713)
T COG2217 549 LKALGIKVVMLTGDNRRTAEAIAKEL-----GIDEVRAELLPEDKAEIVRELQAEGRKVAM 604 (713)
T ss_pred HHHCCCeEEEEcCCCHHHHHHHHHHc-----ChHhheccCCcHHHHHHHHHHHhcCCEEEE
Confidence 44443443344446777888888877 447788899999999999999954344443
No 462
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=53.54 E-value=71 Score=21.97 Aligned_cols=63 Identities=6% Similarity=-0.094 Sum_probs=28.7
Q ss_pred HHHHHhhCCCCcEEEEeCc--hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 67 LNTLFSKLQINQSIIFCNS--TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 67 l~~ll~~~~~~~~lIF~~t--~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
+.+.++.. +..+++++.. .+......+.+...++.-..+.+..... ...++.++...+++++.
T Consensus 21 i~~~a~~~-g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~--~~~~~~~~~~~ipvV~i 85 (269)
T cd06281 21 AEDRLRAA-GYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGDERD--PELVDALASLDLPIVLL 85 (269)
T ss_pred HHHHHHHc-CCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCc--HHHHHHHHhCCCCEEEE
Confidence 33444442 3444544432 2223344455666666544444432211 23455565555666554
No 463
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=53.52 E-value=80 Score=22.56 Aligned_cols=38 Identities=3% Similarity=0.057 Sum_probs=15.8
Q ss_pred HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 92 LAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
..+.|...++.-..+.+..... ...++.+.+..+.+++
T Consensus 108 ~~~~l~~~~vdgiIi~~~~~~~--~~~~~~l~~~~iPvV~ 145 (327)
T TIGR02417 108 VIENLLARQVDALIVASCMPPE--DAYYQKLQNEGLPVVA 145 (327)
T ss_pred HHHHHHHcCCCEEEEeCCCCCC--hHHHHHHHhcCCCEEE
Confidence 3344444555544444432211 1234445444455443
No 464
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=53.36 E-value=86 Score=22.83 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=14.1
Q ss_pred HHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 96 ITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 96 L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
|...++.-..+.+..... =...++.+.+..+++++
T Consensus 77 l~~~~vDGiIi~~~~~~~-~~~~l~~~~~~~iPvV~ 111 (330)
T PRK10355 77 MINRGVDVLVIIPYNGQV-LSNVIKEAKQEGIKVLA 111 (330)
T ss_pred HHHcCCCEEEEeCCChhh-HHHHHHHHHHCCCeEEE
Confidence 334455544444432111 01234445444455443
No 465
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=53.27 E-value=36 Score=18.46 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=30.6
Q ss_pred HHHHHHhhCCCCcEE-EEeCchHHHHHHHHHHHhcCceEEEE
Q psy13287 66 CLNTLFSKLQINQSI-IFCNSTQRVELLAKKITELGYCCYYI 106 (140)
Q Consensus 66 ~l~~ll~~~~~~~~l-IF~~t~~~~~~~~~~L~~~~~~v~~~ 106 (140)
.+.+.+++.+.+..| |.++.....+.+..+++..|+.+..+
T Consensus 16 ~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~ 57 (70)
T PF01206_consen 16 KAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEV 57 (70)
T ss_dssp HHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 345566777666655 88888888999999999999886544
No 466
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=53.11 E-value=87 Score=22.82 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=10.6
Q ss_pred CCHHHHHHHHHHhh---cCCccEEEEe
Q psy13287 110 MAQAHRNRVFHDFR---SGLCRNLVCS 133 (140)
Q Consensus 110 ~~~~~R~~~~~~f~---~g~~~vlv~T 133 (140)
++.+||.++++... .|++.|++.+
T Consensus 58 Lt~eEr~~v~~~~~~~~~grvpvi~Gv 84 (309)
T cd00952 58 LTWEEKQAFVATVVETVAGRVPVFVGA 84 (309)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 44445554444432 2444444443
No 467
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=52.99 E-value=77 Score=22.22 Aligned_cols=40 Identities=5% Similarity=-0.088 Sum_probs=18.2
Q ss_pred HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 92 LAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
..+.+...+..-..+.+.-+ ..=...++.+++..++++..
T Consensus 47 ~i~~~~~~~vdgiii~~~~~-~~~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 47 QIENMIAKGVDVLVIAPVDG-EALASAVEKAADAGIPVIAY 86 (288)
T ss_pred HHHHHHHcCCCEEEEecCCh-hhHHHHHHHHHHCCCCEEEE
Confidence 33334445665445544321 11123455566555665443
No 468
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=52.98 E-value=94 Score=23.17 Aligned_cols=70 Identities=14% Similarity=0.276 Sum_probs=45.0
Q ss_pred hHHHHHHHHhhCCCCcEEEEeCc--hH--HHHHHHHHHHhcCceEEEEec---CCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 63 KVHCLNTLFSKLQINQSIIFCNS--TQ--RVELLAKKITELGYCCYYIHA---RMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 63 k~~~l~~ll~~~~~~~~lIF~~t--~~--~~~~~~~~L~~~~~~v~~~h~---~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
-...+.+.++....++.+|.+.. .+ ..+++.+.|++.|+.+..+.+ .-+.+.=.+..+.++..+.+.+|+
T Consensus 11 ~~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIa 87 (370)
T cd08192 11 AIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIA 87 (370)
T ss_pred HHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 45556666766655677776632 12 367788888887877665533 334445566677777788888875
No 469
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=52.95 E-value=34 Score=18.04 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=29.1
Q ss_pred CchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 84 NSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 84 ~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
.....|..+...|.+.++.+..+.-+-+++.+....+.+..+.+.+++
T Consensus 8 ~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~ 55 (74)
T TIGR02196 8 PWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIV 55 (74)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEE
Confidence 445666667777777777766665554555555555666555555554
No 470
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=52.76 E-value=36 Score=18.30 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=19.3
Q ss_pred EEEEeCchHHHHHHHHHHHhcCceEEEEecCC
Q psy13287 79 SIIFCNSTQRVELLAKKITELGYCCYYIHARM 110 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~ 110 (140)
.|..+++.-+|+-+...|...|+.+......+
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 46778888899999999999998876654443
No 471
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=52.64 E-value=95 Score=23.12 Aligned_cols=70 Identities=10% Similarity=0.027 Sum_probs=44.5
Q ss_pred hHHHHHHHHhhCCCCcEEEEeCc-hHHHHHHHHHHHhcCceEEEEecCC---CHHHHHHHHHHhhcCCccEEEE
Q psy13287 63 KVHCLNTLFSKLQINQSIIFCNS-TQRVELLAKKITELGYCCYYIHARM---AQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 63 k~~~l~~ll~~~~~~~~lIF~~t-~~~~~~~~~~L~~~~~~v~~~h~~~---~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
..+.+.+.+.....++++|.+.. ....+.+.+.|++.++.+..+.+-- +.+.=.+..+.+++.+.+.+|+
T Consensus 10 ~l~~l~~~~~~~g~~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 83 (367)
T cd08182 10 AIAKLPSLLKGLGGKRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLA 83 (367)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEE
Confidence 45566666766555677776643 2245667777877777776665432 2344556667777778888875
No 472
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=52.53 E-value=65 Score=23.60 Aligned_cols=46 Identities=11% Similarity=0.103 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCce-EEEEecCCCHHH-HHHHHHHhhcCCccEEEEec
Q psy13287 89 VELLAKKITELGYC-CYYIHARMAQAH-RNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 89 ~~~~~~~L~~~~~~-v~~~h~~~~~~~-R~~~~~~f~~g~~~vlv~T~ 134 (140)
++-+.+.+++.+.. +..+.|.|.+.- |..+-+-.++|-++++|||-
T Consensus 34 ~~i~~~m~~~~~~~ifLt~tg~mvsaGlr~ii~~Li~~g~Vd~ivtTg 81 (301)
T TIGR00321 34 DKIWKEMCFDEEITIFMGYAGNLVPSGMREIIAYLIQHGMIDALVTTG 81 (301)
T ss_pred HHHHHHHHhCCCCeEEEEeccccchhhHHHHHHHHHHcCCeeEEEeCC
Confidence 33444444333333 678889887665 76666667889999999996
No 473
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=52.52 E-value=98 Score=23.24 Aligned_cols=70 Identities=6% Similarity=-0.007 Sum_probs=46.3
Q ss_pred chHHHHHHHHhhCCCCcEEEEeCc--hH---HHHHHHHHHHhcCceEEEEec---CCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 62 QKVHCLNTLFSKLQINQSIIFCNS--TQ---RVELLAKKITELGYCCYYIHA---RMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 62 ~k~~~l~~ll~~~~~~~~lIF~~t--~~---~~~~~~~~L~~~~~~v~~~h~---~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
.....+.++++.. .++++|.+.. .+ ..+.+.+.|...|+.+..+-+ +-+.+.=.+..+.++..+.+++|+
T Consensus 15 g~~~~l~~~~~~~-~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 92 (382)
T cd08187 15 GTESELGKELKKY-GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILA 92 (382)
T ss_pred CHHHHHHHHHHHh-CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3455666667665 4678877753 22 246788888888887765543 233455566777788888888875
No 474
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=52.46 E-value=1.1e+02 Score=23.84 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=37.7
Q ss_pred HHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHH
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRV 118 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~ 118 (140)
.+...++.+..+..++-||+|. +.+.+.+..+..+..+..+||.-+++.-..+
T Consensus 295 ~~~a~~i~~~l~v~~VgVfv~~--~~~~i~~i~~~~~lD~vQLHG~e~~~~~~~l 347 (454)
T PRK09427 295 LEQAQEIIAAAPLRYVGVFRNA--DIEDIVDIAKQLSLAAVQLHGDEDQAYIDAL 347 (454)
T ss_pred HHHHHHHHHhCCCCEEEEEeCC--CHHHHHHHHHHcCCCEEEeCCCCCHHHHHHH
Confidence 4555666665555667899865 4566667777789999999999887764443
No 475
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=52.03 E-value=84 Score=22.69 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHHhh---cCCccEEEEe
Q psy13287 110 MAQAHRNRVFHDFR---SGLCRNLVCS 133 (140)
Q Consensus 110 ~~~~~R~~~~~~f~---~g~~~vlv~T 133 (140)
|+.+||.++++.+. .|++.|++.+
T Consensus 50 Ls~~Er~~l~~~~~~~~~g~~pvi~gv 76 (294)
T TIGR02313 50 LTLEERKQAIENAIDQIAGRIPFAPGT 76 (294)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 45555555555443 3445555443
No 476
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=51.90 E-value=97 Score=24.12 Aligned_cols=27 Identities=4% Similarity=-0.068 Sum_probs=13.9
Q ss_pred HHHHHHHHHh-cCceEEEEecCCCHHHH
Q psy13287 89 VELLAKKITE-LGYCCYYIHARMAQAHR 115 (140)
Q Consensus 89 ~~~~~~~L~~-~~~~v~~~h~~~~~~~R 115 (140)
+-.+|++|+. .|..|..+--+++.-.+
T Consensus 219 a~tiAEyfrd~~G~~VLl~~DslTR~A~ 246 (449)
T TIGR03305 219 ALTMAEYFRDDEKQDVLLLIDNIFRFIQ 246 (449)
T ss_pred HHHHHHHHHHhcCCceEEEecChHHHHH
Confidence 4455556655 55555555555444333
No 477
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=51.86 E-value=97 Score=23.02 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=26.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc--------CceEEEEecCCCHH
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL--------GYCCYYIHARMAQA 113 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~--------~~~v~~~h~~~~~~ 113 (140)
..+++++++++.-++..++.+++. +..+..++|+..++
T Consensus 39 ~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d 84 (357)
T TIGR03158 39 ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKD 84 (357)
T ss_pred CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHH
Confidence 457899999998888777766543 45677777764443
No 478
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=51.62 E-value=81 Score=22.79 Aligned_cols=47 Identities=21% Similarity=0.243 Sum_probs=31.6
Q ss_pred hHHHHHHHHhhC-CCCcEEEEeCc-hHHHHHHHHHHHhcCceEEEEecC
Q psy13287 63 KVHCLNTLFSKL-QINQSIIFCNS-TQRVELLAKKITELGYCCYYIHAR 109 (140)
Q Consensus 63 k~~~l~~ll~~~-~~~~~lIF~~t-~~~~~~~~~~L~~~~~~v~~~h~~ 109 (140)
..+.|.+.+.++ ..+.+|||.+. -+.+|++|..+--..-.-..++|.
T Consensus 165 N~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~ 213 (300)
T COG4152 165 NVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGT 213 (300)
T ss_pred hHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEecc
Confidence 456677777665 46899999865 467889998875443333445555
No 479
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=51.62 E-value=77 Score=21.76 Aligned_cols=34 Identities=6% Similarity=-0.166 Sum_probs=15.2
Q ss_pred hcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 98 ELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 98 ~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
..++....+.+..+... ...++..++..+.++..
T Consensus 53 ~~~vdgii~~~~~~~~~-~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 53 AQKVDAIIIQHGRAEVL-KPWVKRALDAGIPVVAF 86 (273)
T ss_pred HcCCCEEEEecCChhhh-HHHHHHHHHcCCCEEEe
Confidence 34665555543222111 23355555555665444
No 480
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=51.54 E-value=63 Score=23.83 Aligned_cols=49 Identities=10% Similarity=0.165 Sum_probs=38.7
Q ss_pred CchHHHHHHHHHHHhcCce---EEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 84 NSTQRVELLAKKITELGYC---CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 84 ~t~~~~~~~~~~L~~~~~~---v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
.|-.+.-..++.|++.|-+ +.+-||=++ ....+.+.++.++=+|+||..
T Consensus 225 dTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs----~~a~~~l~~~~i~~vivTnTi 276 (314)
T COG0462 225 DTGGTIAKAAKALKERGAKKVYAAATHGVFS----GAALERLEASAIDEVIVTDTI 276 (314)
T ss_pred cccHHHHHHHHHHHHCCCCeEEEEEEchhhC----hHHHHHHhcCCCCEEEEeCCc
Confidence 5666777788899988653 788888877 366788888889999999964
No 481
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.25 E-value=77 Score=21.67 Aligned_cols=17 Identities=0% Similarity=-0.189 Sum_probs=7.6
Q ss_pred HHHHHHHhcCceEEEEe
Q psy13287 91 LLAKKITELGYCCYYIH 107 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h 107 (140)
.+-+.+...++.-..+.
T Consensus 46 ~~i~~l~~~~~dgiii~ 62 (265)
T cd06290 46 EALELLKSRRVDALILL 62 (265)
T ss_pred HHHHHHHHCCCCEEEEe
Confidence 33344445555433333
No 482
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=51.23 E-value=49 Score=26.47 Aligned_cols=53 Identities=8% Similarity=0.077 Sum_probs=33.5
Q ss_pred EEEEeCchHHHH-HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 79 SIIFCNSTQRVE-LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 79 ~lIF~~t~~~~~-~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.|||++|..++- .....++... ..+.+-.+...-.++++.|...+++++|.||
T Consensus 103 pivYTPtVg~ac~~~s~~~r~p~---Gly~s~~drg~i~~~l~Nwp~~~v~viVVTD 156 (559)
T PTZ00317 103 PIIYTPTVGEACQNYSNLFQRDR---GLYLSRAHKGKIREILKNWPYDNVDVIVITD 156 (559)
T ss_pred ceecCcchHHHHHHHHhcccccC---ceEEeecCcchHHHHHhcCCccCceEEEEec
Confidence 589999987744 3444443321 2222223344445677778888999999999
No 483
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=51.17 E-value=50 Score=19.46 Aligned_cols=47 Identities=9% Similarity=0.067 Sum_probs=33.3
Q ss_pred CCCcEEEEe------CchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHH
Q psy13287 75 QINQSIIFC------NSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHD 121 (140)
Q Consensus 75 ~~~~~lIF~------~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~ 121 (140)
...+++||. +...-|.++.+.|++.|+....+.=..+.+.|..+.+.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~ 62 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEY 62 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHH
Confidence 457899996 34677888889999988877666544456666665543
No 484
>PF03846 SulA: Cell division inhibitor SulA; InterPro: IPR004596 All proteins in this family for which the functions are known are cell division inhibitors. In Escherichia coli, SulA is one of the SOS regulated genes. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, SulA binds a polymerisation-competent form of ftsZ in a 1:1 ratio, thus inhibiting ftsZ polymerisation and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division. The expression of SulA is repressed by LexA. The N terminus of SulA may be involved in recognising the cell division apparatus.; GO: 0009432 SOS response, 0051782 negative regulation of cell division, 0009276 Gram-negative-bacterium-type cell wall; PDB: 1OFU_X 1OFT_A.
Probab=51.15 E-value=59 Score=20.31 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=43.4
Q ss_pred HHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 67 LNTLFSKL-QINQSIIFCNSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 67 l~~ll~~~-~~~~~lIF~~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
|.-+|..+ ...+=|.|..-... --..+|++.|+ ++..+|..-+...-+..++.++.|.+.++|+
T Consensus 49 LlPlL~qLsqqsRWllwi~P~~~--ls~~wL~~aGl~~~kvl~l~~~~~~~tl~amekAL~sGn~s~Vl~ 116 (119)
T PF03846_consen 49 LLPLLRQLSQQSRWLLWIAPPQK--LSRQWLQQAGLPLEKVLQLHPRNPQSTLEAMEKALRSGNYSAVLG 116 (119)
T ss_dssp HHHHHHHHHSSSSEEEEES--TT--S-HHHHHHTT--CCCEEEE--SSTTHHHHHHHHHHHHT-EEEEEE
T ss_pred HHHHHHHhCccceEEEEECCCcc--cCHHHHHHcCCChhHeEEeCCCCcccHHHHHHHHHHhCCCeEEEE
Confidence 56666666 35777877743322 12457778877 5899999999999999999999999998886
No 485
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=51.10 E-value=98 Score=22.85 Aligned_cols=33 Identities=3% Similarity=-0.004 Sum_probs=14.2
Q ss_pred CceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 100 GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 100 ~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
++.+..+.|.-+.+.=.+..+.++..+.+++|+
T Consensus 50 ~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIa 82 (347)
T cd08172 50 EAFVLRYDGECSEENIERLAAQAKENGADVIIG 82 (347)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 333444444433333444444444444554443
No 486
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=51.01 E-value=1.1e+02 Score=23.95 Aligned_cols=26 Identities=4% Similarity=-0.143 Sum_probs=14.1
Q ss_pred HHHHHHHHHhc-CceEEEEecCCCHHH
Q psy13287 89 VELLAKKITEL-GYCCYYIHARMAQAH 114 (140)
Q Consensus 89 ~~~~~~~L~~~-~~~v~~~h~~~~~~~ 114 (140)
+-.+|++|+.. |..|..+-=+++.-.
T Consensus 224 a~tiAEyfrd~~G~~VLl~~DslTR~A 250 (461)
T PRK12597 224 GLTIAEYLRDEEKEDVLLFIDNIFRFV 250 (461)
T ss_pred HHHHHHHHHHhcCCceEEEeccchHHH
Confidence 44556666655 566655555544333
No 487
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=50.96 E-value=75 Score=23.17 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=36.8
Q ss_pred CchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 84 NSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 84 ~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
.|-.+....++.|++.|. .+...||=.+.+. ++++.+..++-+|+||..
T Consensus 213 ~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~v~~~~a----~~~l~~~~~~~iv~t~ti 264 (302)
T PLN02369 213 DTAGTITKGAALLHQEGAREVYACATHAVFSPPA----IERLSSGLFQEVIVTNTI 264 (302)
T ss_pred cchHHHHHHHHHHHhCCCCEEEEEEEeeeeCHHH----HHHHHhCCCCEEEEeCCC
Confidence 667778888899988865 4677788877744 455666678999999853
No 488
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=50.89 E-value=78 Score=21.66 Aligned_cols=54 Identities=6% Similarity=0.004 Sum_probs=27.6
Q ss_pred CCcEEEEeCc--hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 76 INQSIIFCNS--TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 76 ~~~~lIF~~t--~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
...+++++.. ......+.+.+...++....+.+....... ++.+++..+++++.
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~---~~~~~~~~ipvV~~ 84 (264)
T cd06274 29 GYQLLIACSDDDPETERETVETLIARQVDALIVAGSLPPDDP---YYLCQKAGLPVVAL 84 (264)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCchHH---HHHHHhcCCCEEEe
Confidence 4556666543 233345555666667765555554322221 55566555665443
No 489
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=50.86 E-value=59 Score=24.01 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCce-EEEEecCCCHHH-HHHHHHHhhcCCccEEEEec
Q psy13287 89 VELLAKKITELGYC-CYYIHARMAQAH-RNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 89 ~~~~~~~L~~~~~~-v~~~h~~~~~~~-R~~~~~~f~~g~~~vlv~T~ 134 (140)
++-+.+.+++.+.. +..+.|.|.+.- |..+-.-.++|-++++|||-
T Consensus 46 ~~i~~~ml~~~~~~ifL~~tg~mvsaGlr~ii~~Li~~~~VD~iVtTg 93 (316)
T PRK02301 46 VDIYEEMLADDDVTKFFGLAGAMVPAGMRGIVSDLIRDGHIDVLVTTG 93 (316)
T ss_pred HHHHHHHHhCCCCeEEEEcccchhHHHHHHHHHHHHHcCCeeEEEcCC
Confidence 44444444344444 678889887665 76666666889999999996
No 490
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=50.74 E-value=66 Score=23.89 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCce-EEEEecCCCHHH-HHHHHHHhhcCCccEEEEec
Q psy13287 89 VELLAKKITELGYC-CYYIHARMAQAH-RNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 89 ~~~~~~~L~~~~~~-v~~~h~~~~~~~-R~~~~~~f~~g~~~vlv~T~ 134 (140)
++-+.+.+.+.+.. +..+.|.|.+.- |..+-.-.++|-++++|||-
T Consensus 35 ~~i~~~Ml~d~~~~ifL~~tg~mvsaGlr~~i~~Li~~g~VD~iVTTg 82 (329)
T PRK00805 35 VRVWTEMLKDPDNTIFMGLSGAMVPAGMRKIIKWLIRNRYVDVLVSTG 82 (329)
T ss_pred HHHHHHHHhCCCCeEEEEeccchHHHHHHHHHHHHHHcCCeeEEEeCC
Confidence 44444444444554 678889886665 76666667889999999996
No 491
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=50.41 E-value=1.2e+02 Score=23.72 Aligned_cols=25 Identities=8% Similarity=-0.015 Sum_probs=12.3
Q ss_pred HHHHHHHHHh-cCceEEEEecCCCHH
Q psy13287 89 VELLAKKITE-LGYCCYYIHARMAQA 113 (140)
Q Consensus 89 ~~~~~~~L~~-~~~~v~~~h~~~~~~ 113 (140)
+-.+|++|+. .|..|..+-=+++.-
T Consensus 224 a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 224 GLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHhcCCeeEEEecchhHH
Confidence 3345555555 455555554444433
No 492
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=50.40 E-value=84 Score=27.16 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=48.8
Q ss_pred HHHHHHHHhhCCC-CcEEEEeCc---hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 64 VHCLNTLFSKLQI-NQSIIFCNS---TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 64 ~~~l~~ll~~~~~-~~~lIF~~t---~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...|--+|..+.. +--+|-+|. +++++++...++-.|..|.++..++++++|...+. ++|.-+|+
T Consensus 167 vatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~~~~~~Rr~aY~------~DItYgTn 235 (1025)
T PRK12900 167 VSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNTMRPEERREQYL------CDITYGTN 235 (1025)
T ss_pred HhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCCCCCHHHHHHhCC------CcceecCC
Confidence 4455556666644 334666665 88899999999999999999999999999987664 46666665
No 493
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=50.39 E-value=79 Score=21.58 Aligned_cols=36 Identities=3% Similarity=-0.051 Sum_probs=15.8
Q ss_pred HHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 93 AKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 93 ~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
.+.+...+.....+-+..... ..++.+....+.+++
T Consensus 48 i~~l~~~~vdgiii~~~~~~~---~~~~~l~~~~ipvV~ 83 (268)
T cd06298 48 LNNLLAKQVDGIIFMGGKISE---EHREEFKRSPTPVVL 83 (268)
T ss_pred HHHHHHhcCCEEEEeCCCCcH---HHHHHHhcCCCCEEE
Confidence 334445566544444432111 234445444455543
No 494
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=50.17 E-value=1e+02 Score=22.88 Aligned_cols=70 Identities=10% Similarity=0.202 Sum_probs=44.2
Q ss_pred hHHHHHHHHhhCCCCcEEEEeCch----HHHHHHHHHHHhcCceEEEEec---CCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 63 KVHCLNTLFSKLQINQSIIFCNST----QRVELLAKKITELGYCCYYIHA---RMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 63 k~~~l~~ll~~~~~~~~lIF~~t~----~~~~~~~~~L~~~~~~v~~~h~---~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
-.+.+.+.++....++++|.+... ...+.+.+.|.+.++.+..+.+ .-+.+.=.+..+.++..+.+.+|+
T Consensus 10 ~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~Iia 86 (370)
T cd08551 10 AIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIA 86 (370)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 355666666666556777766432 2235677788777777655543 334555666777777777888776
No 495
>KOG0921|consensus
Probab=50.07 E-value=18 Score=30.75 Aligned_cols=73 Identities=12% Similarity=0.303 Sum_probs=57.4
Q ss_pred HHHHHHHhhCC----CCcEEEEeCchHHHHHHHHHHHhc-------CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEe
Q psy13287 65 HCLNTLFSKLQ----INQSIIFCNSTQRVELLAKKITEL-------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS 133 (140)
Q Consensus 65 ~~l~~ll~~~~----~~~~lIF~~t~~~~~~~~~~L~~~-------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T 133 (140)
..+..++.... ++-+++|.+-=.....++.+|..+ .+++...|+-...++..++.+....|..+++++|
T Consensus 628 ~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~st 707 (1282)
T KOG0921|consen 628 GLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILST 707 (1282)
T ss_pred HHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccccccccccccc
Confidence 33444444442 456789999888888888888654 5578999999999999999999999999999999
Q ss_pred cccC
Q psy13287 134 GDSS 137 (140)
Q Consensus 134 ~~~~ 137 (140)
+++.
T Consensus 708 niae 711 (1282)
T KOG0921|consen 708 NIAE 711 (1282)
T ss_pred ceee
Confidence 8764
No 496
>PRK14873 primosome assembly protein PriA; Provisional
Probab=49.96 E-value=35 Score=27.87 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=28.7
Q ss_pred HHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 89 VELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 89 ~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+|+++++|.+. +.++..+-++ .++++|. ++.+|||+|.
T Consensus 440 ter~eeeL~~~FP~~~V~r~d~d-------~~l~~~~-~~~~IlVGTq 479 (665)
T PRK14873 440 ARRTAEELGRAFPGVPVVTSGGD-------QVVDTVD-AGPALVVATP 479 (665)
T ss_pred HHHHHHHHHHHCCCCCEEEEChH-------HHHHhhc-cCCCEEEECC
Confidence 78888888776 5566554332 4788996 5999999998
No 497
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=49.91 E-value=92 Score=22.19 Aligned_cols=15 Identities=0% Similarity=-0.060 Sum_probs=6.6
Q ss_pred HHHHhcCceEEEEec
Q psy13287 94 KKITELGYCCYYIHA 108 (140)
Q Consensus 94 ~~L~~~~~~v~~~h~ 108 (140)
+.|...++.-..+.+
T Consensus 106 ~~l~~~~vdGiI~~~ 120 (327)
T PRK10423 106 ETLMQKRVDGLLLLC 120 (327)
T ss_pred HHHHHcCCCEEEEeC
Confidence 334445554334433
No 498
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=49.91 E-value=81 Score=21.52 Aligned_cols=68 Identities=9% Similarity=0.046 Sum_probs=47.3
Q ss_pred hHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCce--EEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 63 KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC--CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 63 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~--v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
-...+.+++... + .-.|||.+-..+..+++.|++.|.. +..+-.+.++ ...+.+++|.+...+..+..
T Consensus 170 a~~~~~~~l~~~-~-~~~i~~~~~~~~~g~~~al~~~g~~~~~~v~g~d~~~----~~~~~i~~g~~~a~v~~~~~ 239 (257)
T PF13407_consen 170 ARQAIENLLQAN-P-VDAIIACNDGMALGAAQALQQAGRAGKVIVVGFDGSP----EALEAIKDGNITATVGQDPY 239 (257)
T ss_dssp HHHHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEEECHH----HHHHHHHTTSSSEEEEE-HH
T ss_pred HHHHHHHhhhcC-C-ceEEEeCCChHHHHHHHHHHHcCCcccceeecCCCCH----HHHHHHHCCCCeEEEeCCHH
Confidence 355667777754 3 6678999999999999999998652 4344445555 44566788998888777643
No 499
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=49.87 E-value=82 Score=21.57 Aligned_cols=19 Identities=0% Similarity=-0.071 Sum_probs=10.2
Q ss_pred HHHHHHHhcCceEEEEecC
Q psy13287 91 LLAKKITELGYCCYYIHAR 109 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~ 109 (140)
+..+.|...+..-..+.+.
T Consensus 46 ~~i~~l~~~~vdgiii~~~ 64 (269)
T cd06275 46 SYLRMLAQKRVDGLLVMCS 64 (269)
T ss_pred HHHHHHHHcCCCEEEEecC
Confidence 3444555666665555553
No 500
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=49.86 E-value=84 Score=23.29 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=0.0
Q ss_pred eCchHHHHHHHHHHHhcCce---EEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 83 CNSTQRVELLAKKITELGYC---CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 83 ~~t~~~~~~~~~~L~~~~~~---v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+.|-.+....++.|++.|.+ +..-||=.+. ..++++.+..++-++|||
T Consensus 240 i~TG~T~~~a~~~L~~~Ga~~v~~~~tH~v~s~----~a~~~l~~~~id~iv~tn 290 (330)
T PRK02812 240 IDTGGTICEGARLLRKEGAKQVYACATHAVFSP----PAIERLSSGLFEEVIVTN 290 (330)
T ss_pred cCcHHHHHHHHHHHhccCCCeEEEEEEcccCCh----HHHHHHhhCCCCEEEEeC
Done!