Query psy13287
Match_columns 140
No_of_seqs 107 out of 1585
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 15:36:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 99.9 2.4E-25 8.3E-30 164.8 18.3 138 2-140 224-364 (434)
2 1s2m_A Putative ATP-dependent 99.9 9.5E-24 3.3E-28 154.0 18.5 139 2-140 184-322 (400)
3 2j0s_A ATP-dependent RNA helic 99.9 2.5E-24 8.6E-29 157.6 15.3 139 2-140 200-340 (410)
4 1xti_A Probable ATP-dependent 99.9 2.3E-23 8E-28 151.3 18.7 139 2-140 174-314 (391)
5 3fht_A ATP-dependent RNA helic 99.9 1.6E-23 5.5E-28 153.0 17.0 138 3-140 191-330 (412)
6 2i4i_A ATP-dependent RNA helic 99.9 2.2E-23 7.4E-28 152.7 17.2 129 12-140 210-340 (417)
7 3eiq_A Eukaryotic initiation f 99.9 1.2E-23 4.2E-28 153.8 13.5 139 2-140 204-344 (414)
8 3pey_A ATP-dependent RNA helic 99.9 8.5E-23 2.9E-27 148.2 17.3 138 3-140 168-307 (395)
9 3fmp_B ATP-dependent RNA helic 99.9 7.5E-24 2.6E-28 158.3 5.1 138 3-140 258-397 (479)
10 1hv8_A Putative ATP-dependent 99.9 1.2E-21 4.2E-26 140.9 15.7 135 2-140 168-302 (367)
11 2hjv_A ATP-dependent RNA helic 99.9 1E-21 3.5E-26 127.9 13.0 96 45-140 4-99 (163)
12 2v1x_A ATP-dependent DNA helic 99.9 2.4E-21 8.3E-26 148.2 16.9 132 9-140 197-331 (591)
13 1t5i_A C_terminal domain of A 99.9 1.1E-21 3.8E-26 128.9 12.9 93 48-140 3-95 (172)
14 2p6n_A ATP-dependent RNA helic 99.9 6.1E-22 2.1E-26 132.2 10.7 111 29-140 7-118 (191)
15 1fuu_A Yeast initiation factor 99.9 4.1E-23 1.4E-27 150.1 5.3 139 2-140 183-323 (394)
16 1oyw_A RECQ helicase, ATP-depe 99.9 7.5E-21 2.6E-25 143.7 17.7 133 3-140 166-300 (523)
17 2rb4_A ATP-dependent RNA helic 99.9 1.9E-21 6.4E-26 128.0 12.7 95 46-140 3-98 (175)
18 1fuk_A Eukaryotic initiation f 99.9 3.9E-21 1.3E-25 125.4 12.8 92 49-140 2-94 (165)
19 3sqw_A ATP-dependent RNA helic 99.9 7E-21 2.4E-25 145.3 13.9 130 11-140 212-355 (579)
20 2jgn_A DBX, DDX3, ATP-dependen 99.9 6.6E-21 2.3E-25 126.6 11.1 95 46-140 15-110 (185)
21 3i5x_A ATP-dependent RNA helic 99.9 3.5E-20 1.2E-24 140.8 16.4 130 11-140 263-406 (563)
22 3fho_A ATP-dependent RNA helic 99.9 8.5E-22 2.9E-26 148.4 7.1 139 2-140 281-421 (508)
23 2z0m_A 337AA long hypothetical 99.8 2.5E-19 8.5E-24 127.6 14.4 131 2-140 150-280 (337)
24 3eaq_A Heat resistant RNA depe 99.8 8.7E-20 3E-24 123.5 11.2 92 49-140 4-95 (212)
25 3i32_A Heat resistant RNA depe 99.8 1.2E-19 4.2E-24 128.5 11.7 91 50-140 2-92 (300)
26 2yjt_D ATP-dependent RNA helic 99.7 5.2E-21 1.8E-25 125.4 0.0 92 49-140 2-94 (170)
27 3l9o_A ATP-dependent RNA helic 99.8 2.6E-18 8.9E-23 138.9 15.6 138 2-140 311-544 (1108)
28 2xgj_A ATP-dependent RNA helic 99.8 2.4E-17 8.2E-22 132.4 17.1 138 2-140 213-446 (1010)
29 2eyq_A TRCF, transcription-rep 99.7 8.7E-18 3E-22 136.4 11.6 134 3-140 742-878 (1151)
30 4a4z_A Antiviral helicase SKI2 99.7 5.6E-17 1.9E-21 130.1 15.5 79 62-140 322-439 (997)
31 3oiy_A Reverse gyrase helicase 99.7 5.1E-18 1.7E-22 124.6 8.5 116 11-140 192-315 (414)
32 2xau_A PRE-mRNA-splicing facto 99.7 2.6E-17 8.8E-22 129.2 10.5 131 4-140 233-383 (773)
33 2va8_A SSO2462, SKI2-type heli 99.7 1.5E-16 5.1E-21 124.0 14.6 130 3-140 167-352 (715)
34 2zj8_A DNA helicase, putative 99.7 9.7E-17 3.3E-21 125.2 13.0 132 2-140 159-334 (720)
35 2p6r_A Afuhel308 helicase; pro 99.7 6.6E-17 2.2E-21 125.8 10.6 124 10-140 170-336 (702)
36 2d7d_A Uvrabc system protein B 99.7 4.1E-16 1.4E-20 120.7 14.6 122 11-140 385-509 (661)
37 4ddu_A Reverse gyrase; topoiso 99.7 3.7E-17 1.3E-21 132.2 8.5 125 2-140 229-372 (1104)
38 1c4o_A DNA nucleotide excision 99.7 7.2E-16 2.5E-20 119.4 14.9 122 11-140 379-503 (664)
39 2whx_A Serine protease/ntpase/ 99.7 6.9E-18 2.4E-22 129.7 3.3 116 3-140 298-415 (618)
40 1yks_A Genome polyprotein [con 99.7 3.5E-18 1.2E-22 126.8 1.6 109 11-140 129-237 (440)
41 4f92_B U5 small nuclear ribonu 99.7 1.9E-15 6.5E-20 126.3 16.1 135 5-140 1076-1253(1724)
42 1gku_B Reverse gyrase, TOP-RG; 99.7 2.2E-17 7.5E-22 133.2 3.3 120 10-140 213-337 (1054)
43 2v6i_A RNA helicase; membrane, 99.7 1.9E-16 6.5E-21 117.2 7.8 110 10-140 122-231 (431)
44 1wp9_A ATP-dependent RNA helic 99.7 1.1E-15 3.7E-20 112.9 11.8 80 61-140 342-433 (494)
45 4f92_B U5 small nuclear ribonu 99.7 6.7E-16 2.3E-20 129.0 11.5 132 7-140 239-418 (1724)
46 2wv9_A Flavivirin protease NS2 99.6 2E-16 6.7E-21 122.6 6.7 109 11-140 362-470 (673)
47 4a2p_A RIG-I, retinoic acid in 99.6 2.4E-15 8.4E-20 113.5 11.4 80 61-140 371-467 (556)
48 2ykg_A Probable ATP-dependent 99.6 1.4E-16 4.7E-21 123.6 4.5 80 61-140 379-475 (696)
49 4gl2_A Interferon-induced heli 99.6 6.3E-16 2.1E-20 120.0 8.2 65 76-140 400-478 (699)
50 3tbk_A RIG-I helicase domain; 99.6 4.9E-15 1.7E-19 111.6 12.9 79 62-140 371-466 (555)
51 2jlq_A Serine protease subunit 99.6 7.9E-16 2.7E-20 114.5 7.8 110 10-140 139-248 (451)
52 3jux_A Protein translocase sub 99.6 1.1E-14 3.6E-19 112.6 12.9 124 13-140 410-536 (822)
53 1tf5_A Preprotein translocase 99.6 1.3E-14 4.5E-19 113.5 12.3 123 14-140 369-494 (844)
54 2z83_A Helicase/nucleoside tri 99.6 7.8E-16 2.7E-20 114.7 4.4 61 76-140 190-250 (459)
55 2oca_A DAR protein, ATP-depend 99.6 8.9E-16 3.1E-20 115.4 4.5 138 2-140 242-412 (510)
56 2fsf_A Preprotein translocase 99.6 2.9E-14 9.9E-19 111.5 12.7 123 14-140 378-503 (853)
57 3o8b_A HCV NS3 protease/helica 99.6 1.6E-15 5.3E-20 116.9 4.8 114 2-140 338-453 (666)
58 4a2q_A RIG-I, retinoic acid in 99.6 4.8E-14 1.6E-18 111.2 12.4 79 62-140 613-708 (797)
59 1gm5_A RECG; helicase, replica 99.5 3.5E-15 1.2E-19 117.1 4.2 126 10-140 514-653 (780)
60 1nkt_A Preprotein translocase 99.5 1.8E-13 6.3E-18 107.4 13.1 123 14-140 397-522 (922)
61 3rc3_A ATP-dependent RNA helic 99.5 3.7E-14 1.3E-18 109.9 8.8 123 3-140 261-386 (677)
62 1z5z_A Helicase of the SNF2/RA 99.5 1.8E-13 6E-18 95.7 9.2 83 58-140 92-179 (271)
63 3h1t_A Type I site-specific re 99.5 8.2E-13 2.8E-17 101.0 12.9 65 75-140 438-513 (590)
64 3dmq_A RNA polymerase-associat 99.5 9.9E-14 3.4E-18 111.3 8.0 84 57-140 484-570 (968)
65 2fwr_A DNA repair protein RAD2 99.5 1.7E-15 5.8E-20 112.9 -2.0 76 60-140 333-408 (472)
66 4a2w_A RIG-I, retinoic acid in 99.4 1.9E-13 6.4E-18 109.4 7.1 81 60-140 611-708 (936)
67 1z63_A Helicase of the SNF2/RA 99.2 3.1E-11 1.1E-15 90.4 8.5 81 60-140 323-408 (500)
68 1z3i_X Similar to RAD54-like; 99.1 2.6E-10 9E-15 88.2 10.2 80 61-140 398-483 (644)
69 3mwy_W Chromo domain-containin 99.0 5.7E-10 2E-14 88.2 8.1 80 61-140 555-639 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 98.9 2.5E-09 8.6E-14 86.4 8.6 65 76-140 537-663 (1038)
71 4a15_A XPD helicase, ATP-depen 98.1 3E-05 1E-09 59.9 10.7 124 11-140 374-510 (620)
72 3fe2_A Probable ATP-dependent 98.0 1.1E-05 3.8E-10 54.9 5.2 43 2-44 197-239 (242)
73 1q0u_A Bstdead; DEAD protein, 97.9 1.4E-05 4.9E-10 53.4 4.7 44 2-45 171-214 (219)
74 2ipc_A Preprotein translocase 97.9 0.00031 1E-08 56.2 12.4 82 14-97 380-464 (997)
75 1wrb_A DJVLGB; RNA helicase, D 97.9 1.7E-05 5.8E-10 54.2 4.8 53 2-54 195-252 (253)
76 1qde_A EIF4A, translation init 97.6 7.9E-05 2.7E-09 49.8 5.1 43 2-44 176-218 (224)
77 3oiy_A Reverse gyrase helicase 97.6 0.00025 8.5E-09 51.7 8.1 60 75-134 63-125 (414)
78 3crv_A XPD/RAD3 related DNA he 97.5 0.0031 1.1E-07 47.9 12.7 127 5-140 307-453 (551)
79 3dkp_A Probable ATP-dependent 97.4 0.00024 8.3E-09 48.1 5.3 43 2-44 199-242 (245)
80 1gm5_A RECG; helicase, replica 97.3 0.0008 2.8E-08 53.3 7.6 59 76-134 417-479 (780)
81 4ddu_A Reverse gyrase; topoiso 97.2 0.0012 4.2E-08 54.1 8.1 60 75-134 120-182 (1104)
82 2vl7_A XPD; helicase, unknown 97.2 0.00045 1.5E-08 52.5 5.3 60 75-140 383-444 (540)
83 1oyw_A RECQ helicase, ATP-depe 97.1 0.002 6.8E-08 48.7 7.8 59 76-134 65-123 (523)
84 2v1x_A ATP-dependent DNA helic 97.0 0.0019 6.5E-08 49.6 7.3 60 75-134 83-144 (591)
85 1t6n_A Probable ATP-dependent 96.7 0.0095 3.2E-07 39.4 7.9 55 77-134 83-142 (220)
86 2oxc_A Probable ATP-dependent 96.6 0.0089 3E-07 40.0 7.4 55 75-134 91-150 (230)
87 3ber_A Probable ATP-dependent 96.6 0.019 6.5E-07 39.0 9.0 56 75-134 110-169 (249)
88 2eyq_A TRCF, transcription-rep 96.3 0.03 1E-06 46.3 9.8 60 75-134 651-714 (1151)
89 3fe2_A Probable ATP-dependent 96.3 0.021 7.3E-07 38.4 7.7 55 76-134 102-160 (242)
90 1xti_A Probable ATP-dependent 96.1 0.031 1E-06 40.0 7.9 56 76-134 76-136 (391)
91 1vec_A ATP-dependent RNA helic 96.0 0.034 1.1E-06 36.2 7.4 55 76-134 71-130 (206)
92 2pl3_A Probable ATP-dependent 95.9 0.023 7.9E-07 38.0 6.4 55 75-134 96-154 (236)
93 2gxq_A Heat resistant RNA depe 95.7 0.048 1.6E-06 35.5 7.2 55 76-134 72-128 (207)
94 3bor_A Human initiation factor 95.7 0.031 1E-06 37.5 6.2 57 75-134 97-157 (237)
95 1gku_B Reverse gyrase, TOP-RG; 95.7 0.027 9.2E-07 46.2 6.8 58 75-134 98-163 (1054)
96 1qde_A EIF4A, translation init 95.7 0.017 5.8E-07 38.3 4.8 70 60-134 61-139 (224)
97 3tbk_A RIG-I helicase domain; 95.7 0.028 9.6E-07 42.0 6.4 55 76-134 52-110 (555)
98 3gk5_A Uncharacterized rhodane 95.6 0.027 9.1E-07 33.3 4.9 46 66-111 44-90 (108)
99 3iuy_A Probable ATP-dependent 95.5 0.036 1.2E-06 36.8 6.0 56 75-134 93-151 (228)
100 1wrb_A DJVLGB; RNA helicase, D 95.4 0.057 1.9E-06 36.5 6.8 54 77-134 101-158 (253)
101 4a2q_A RIG-I, retinoic acid in 95.4 0.063 2.2E-06 42.6 7.7 55 76-134 296-354 (797)
102 1fuu_A Yeast initiation factor 95.4 0.066 2.3E-06 38.2 7.3 55 75-134 88-146 (394)
103 4a2p_A RIG-I, retinoic acid in 95.4 0.045 1.5E-06 41.0 6.6 55 76-134 55-113 (556)
104 3foj_A Uncharacterized protein 95.2 0.037 1.3E-06 32.1 4.7 35 76-110 56-90 (100)
105 1wp9_A ATP-dependent RNA helic 95.2 0.12 4.1E-06 37.5 8.4 55 75-134 51-109 (494)
106 1q0u_A Bstdead; DEAD protein, 95.1 0.023 7.8E-07 37.6 4.0 55 76-134 72-134 (219)
107 2i4i_A ATP-dependent RNA helic 95.1 0.2 6.8E-06 36.0 9.1 54 77-134 102-159 (417)
108 2fsf_A Preprotein translocase 95.0 0.14 4.7E-06 41.1 8.5 57 72-134 111-171 (853)
109 1tf5_A Preprotein translocase 94.9 0.18 6E-06 40.4 8.9 57 72-134 120-180 (844)
110 2db3_A ATP-dependent RNA helic 94.9 0.1 3.4E-06 38.3 7.2 55 76-134 129-187 (434)
111 3ly5_A ATP-dependent RNA helic 94.8 0.14 4.9E-06 34.9 7.3 55 76-134 126-184 (262)
112 1hv8_A Putative ATP-dependent 94.7 0.2 6.9E-06 35.2 8.2 55 75-134 73-131 (367)
113 3eme_A Rhodanese-like domain p 94.7 0.027 9.1E-07 32.9 3.0 35 76-110 56-90 (103)
114 3hgt_A HDA1 complex subunit 3; 94.7 0.11 3.8E-06 37.0 6.6 76 58-138 105-182 (328)
115 2l82_A Designed protein OR32; 94.6 0.37 1.3E-05 28.6 7.9 47 80-126 6-52 (162)
116 3iwh_A Rhodanese-like domain p 94.6 0.057 2E-06 31.7 4.3 40 71-110 50-90 (103)
117 3g5j_A Putative ATP/GTP bindin 94.6 0.053 1.8E-06 32.9 4.3 35 77-111 90-125 (134)
118 1wv9_A Rhodanese homolog TT165 94.6 0.038 1.3E-06 31.6 3.4 35 77-111 54-88 (94)
119 1nkt_A Preprotein translocase 94.5 0.23 7.7E-06 40.1 8.6 58 71-134 147-208 (922)
120 2ipc_A Preprotein translocase 94.5 0.18 6.2E-06 40.8 8.1 59 70-134 114-176 (997)
121 2jtq_A Phage shock protein E; 94.5 0.14 4.9E-06 28.5 5.7 36 75-111 40-76 (85)
122 3eiq_A Eukaryotic initiation f 94.4 0.19 6.5E-06 36.1 7.6 57 75-134 107-167 (414)
123 3flh_A Uncharacterized protein 94.3 0.054 1.8E-06 32.7 3.8 45 66-110 60-107 (124)
124 2ykg_A Probable ATP-dependent 94.2 0.14 4.8E-06 39.7 6.9 54 77-134 62-119 (696)
125 3fmo_B ATP-dependent RNA helic 93.9 0.083 2.8E-06 36.9 4.7 68 60-134 141-218 (300)
126 2z0m_A 337AA long hypothetical 93.9 0.19 6.4E-06 34.9 6.5 54 76-134 56-113 (337)
127 1s2m_A Putative ATP-dependent 93.8 0.28 9.5E-06 35.1 7.4 56 75-134 88-147 (400)
128 1gmx_A GLPE protein; transfera 93.8 0.098 3.3E-06 30.6 4.2 45 67-111 48-94 (108)
129 2j0s_A ATP-dependent RNA helic 93.5 0.37 1.3E-05 34.6 7.6 56 75-134 104-163 (410)
130 3hix_A ALR3790 protein; rhodan 93.5 0.065 2.2E-06 31.4 3.0 35 76-110 52-87 (106)
131 4a2w_A RIG-I, retinoic acid in 93.4 0.11 3.8E-06 42.1 5.1 55 76-134 296-354 (936)
132 3nhv_A BH2092 protein; alpha-b 93.4 0.082 2.8E-06 32.9 3.5 36 76-111 72-109 (144)
133 2fz4_A DNA repair protein RAD2 93.3 0.5 1.7E-05 31.7 7.6 51 60-111 118-169 (237)
134 1qxn_A SUD, sulfide dehydrogen 93.1 0.19 6.4E-06 30.9 4.8 36 75-110 81-117 (137)
135 2k0z_A Uncharacterized protein 93.0 0.15 5.1E-06 30.0 4.1 37 75-111 55-91 (110)
136 2fsx_A RV0390, COG0607: rhodan 92.9 0.12 4E-06 32.2 3.8 37 75-111 79-116 (148)
137 4gl2_A Interferon-induced heli 92.9 0.03 1E-06 43.5 1.1 54 77-134 57-114 (699)
138 1tq1_A AT5G66040, senescence-a 92.9 0.09 3.1E-06 31.9 3.1 45 67-111 72-118 (129)
139 3b6e_A Interferon-induced heli 92.9 0.12 4.1E-06 33.7 3.9 55 76-134 82-140 (216)
140 2fwr_A DNA repair protein RAD2 92.6 0.38 1.3E-05 35.5 6.7 61 60-134 118-179 (472)
141 3h11_B Caspase-8; cell death, 92.5 0.78 2.7E-05 31.7 7.7 39 85-124 47-85 (271)
142 2hhg_A Hypothetical protein RP 92.3 0.1 3.5E-06 32.0 2.9 36 75-110 85-121 (139)
143 2h54_A Caspase-1; allosteric s 91.9 1.1 3.9E-05 28.9 7.5 47 77-124 44-101 (178)
144 3dkp_A Probable ATP-dependent 91.7 0.055 1.9E-06 36.3 1.2 56 76-134 98-157 (245)
145 3d1p_A Putative thiosulfate su 91.5 0.13 4.6E-06 31.5 2.8 36 76-111 91-127 (139)
146 3ilm_A ALR3790 protein; rhodan 91.5 0.16 5.4E-06 31.4 3.1 35 76-110 56-91 (141)
147 1vee_A Proline-rich protein fa 91.3 0.16 5.6E-06 31.0 3.0 37 76-112 74-111 (134)
148 4f67_A UPF0176 protein LPG2838 91.1 0.28 9.6E-06 33.9 4.2 47 65-111 170-217 (265)
149 3e4c_A Caspase-1; zymogen, inf 91.0 1.4 4.7E-05 31.0 7.8 47 77-124 61-118 (302)
150 1c4o_A DNA nucleotide excision 90.8 4.8 0.00016 31.4 11.7 82 53-135 31-139 (664)
151 3sqw_A ATP-dependent RNA helic 90.7 0.81 2.8E-05 34.8 6.8 55 77-134 96-158 (579)
152 1qtn_A Caspase-8; apoptosis, d 90.7 2.1 7E-05 27.3 7.7 38 86-124 54-91 (164)
153 3hjh_A Transcription-repair-co 90.5 3.3 0.00011 31.0 9.8 82 52-134 16-110 (483)
154 3i5x_A ATP-dependent RNA helic 90.5 0.88 3E-05 34.3 6.8 55 77-134 147-209 (563)
155 2oca_A DAR protein, ATP-depend 90.1 0.5 1.7E-05 35.2 5.2 53 75-134 156-212 (510)
156 1pyo_A Caspase-2; apoptosis, c 89.6 2.7 9.4E-05 26.8 7.8 48 76-124 33-94 (167)
157 1urh_A 3-mercaptopyruvate sulf 89.5 0.74 2.5E-05 31.6 5.3 48 65-112 216-267 (280)
158 3h11_A CAsp8 and FADD-like apo 89.2 0.35 1.2E-05 33.5 3.5 48 76-124 43-90 (272)
159 2dko_A Caspase-3; low barrier 89.1 2.5 8.7E-05 26.3 7.1 40 85-125 39-78 (146)
160 3od5_A Caspase-6; caspase doma 88.5 2.7 9.2E-05 29.1 7.6 48 76-124 21-82 (278)
161 1m72_A Caspase-1; caspase, cys 88.2 3.6 0.00012 28.4 8.0 48 77-125 33-93 (272)
162 1uar_A Rhodanese; sulfurtransf 87.9 1 3.5E-05 30.9 5.2 47 64-110 218-269 (285)
163 2d7d_A Uvrabc system protein B 87.9 7.2 0.00025 30.4 10.3 81 53-134 35-142 (661)
164 3sir_A Caspase; hydrolase; 2.6 87.8 2.5 8.4E-05 29.0 7.0 40 85-125 42-81 (259)
165 3p45_A Caspase-6; protease, hu 87.8 4 0.00014 26.4 8.2 49 76-125 44-106 (179)
166 2j32_A Caspase-3; Pro-caspase3 87.6 3.7 0.00013 27.9 7.8 39 86-125 40-78 (250)
167 3tg1_B Dual specificity protei 87.6 0.42 1.4E-05 30.0 2.8 35 76-110 93-136 (158)
168 3i2v_A Adenylyltransferase and 86.7 0.62 2.1E-05 27.7 3.1 34 78-111 74-114 (127)
169 4fn4_A Short chain dehydrogena 86.6 5.1 0.00018 27.3 8.0 59 76-134 31-92 (254)
170 3fht_A ATP-dependent RNA helic 86.4 1.1 3.6E-05 32.1 4.7 52 76-134 95-151 (412)
171 1urh_A 3-mercaptopyruvate sulf 86.3 0.88 3E-05 31.2 4.1 46 65-110 72-122 (280)
172 2fp3_A Caspase NC; apoptosis, 86.1 2.8 9.7E-05 29.6 6.7 48 76-124 61-120 (316)
173 3l9o_A ATP-dependent RNA helic 86.1 1.6 5.5E-05 36.2 6.1 49 75-134 226-274 (1108)
174 2zj8_A DNA helicase, putative 85.7 0.64 2.2E-05 36.4 3.5 52 76-134 68-122 (720)
175 2ql9_A Caspase-7; cysteine pro 85.5 4.6 0.00016 26.0 6.9 48 77-125 45-106 (173)
176 2p6r_A Afuhel308 helicase; pro 85.5 0.91 3.1E-05 35.4 4.2 53 75-134 67-122 (702)
177 1e0c_A Rhodanese, sulfurtransf 85.4 0.87 3E-05 31.0 3.7 36 75-110 222-258 (271)
178 2nn3_C Caspase-1; cysteine pro 85.4 4.2 0.00014 28.7 7.2 49 76-125 60-121 (310)
179 4ehd_A Caspase-3; caspase, apo 85.3 5.6 0.00019 27.5 7.8 40 85-125 67-106 (277)
180 2eg4_A Probable thiosulfate su 85.3 0.73 2.5E-05 30.7 3.2 37 75-111 183-219 (230)
181 4a4z_A Antiviral helicase SKI2 85.2 1.7 6E-05 35.5 5.8 49 75-134 81-131 (997)
182 3hzu_A Thiosulfate sulfurtrans 85.0 1.7 5.7E-05 30.6 5.1 46 65-110 97-147 (318)
183 1nw9_B Caspase 9, apoptosis-re 84.4 6.6 0.00023 27.0 7.8 47 77-124 22-82 (277)
184 1e0c_A Rhodanese, sulfurtransf 84.2 1.1 3.8E-05 30.5 3.8 46 65-110 67-117 (271)
185 1rif_A DAR protein, DNA helica 83.9 1.6 5.4E-05 29.8 4.5 52 76-134 157-212 (282)
186 3pey_A ATP-dependent RNA helic 83.6 1.9 6.4E-05 30.5 4.9 52 75-134 74-129 (395)
187 2eg4_A Probable thiosulfate su 83.4 2.9 9.9E-05 27.7 5.5 43 66-109 50-95 (230)
188 3aay_A Putative thiosulfate su 82.8 2.5 8.6E-05 28.8 5.1 45 66-110 213-262 (277)
189 2j6p_A SB(V)-AS(V) reductase; 82.7 2.3 7.8E-05 26.4 4.5 47 64-111 56-111 (152)
190 1uar_A Rhodanese; sulfurtransf 82.3 1.4 4.8E-05 30.2 3.7 45 66-110 66-115 (285)
191 1z63_A Helicase of the SNF2/RA 82.2 3.1 0.0001 30.8 5.7 50 75-134 85-136 (500)
192 1rhs_A Sulfur-substituted rhod 82.1 1.6 5.5E-05 30.2 4.0 47 65-111 226-276 (296)
193 2wlr_A Putative thiosulfate su 81.9 3.7 0.00013 30.0 6.0 48 64-111 188-239 (423)
194 1f1j_A Caspase-7 protease; cas 81.8 6.4 0.00022 27.7 6.9 48 77-125 70-131 (305)
195 3ipz_A Monothiol glutaredoxin- 81.7 5.7 0.0002 23.0 8.4 57 75-131 16-78 (109)
196 3aay_A Putative thiosulfate su 81.2 2.5 8.6E-05 28.8 4.7 46 65-110 63-113 (277)
197 3ntd_A FAD-dependent pyridine 80.3 1.4 4.6E-05 33.3 3.3 41 71-111 518-559 (565)
198 3zyw_A Glutaredoxin-3; metal b 80.1 6.8 0.00023 22.9 7.9 57 75-131 14-76 (111)
199 2ouc_A Dual specificity protei 80.1 0.81 2.8E-05 27.6 1.7 35 76-110 83-126 (142)
200 1yt8_A Thiosulfate sulfurtrans 79.6 2 6.8E-05 32.5 4.0 37 75-111 321-358 (539)
201 1b93_A Protein (methylglyoxal 79.3 3.9 0.00013 25.7 4.6 74 52-135 12-91 (152)
202 1vlj_A NADH-dependent butanol 79.2 16 0.00054 26.6 9.3 68 65-132 32-107 (407)
203 1u6t_A SH3 domain-binding glut 79.2 5.7 0.00019 23.9 5.2 39 84-122 14-52 (121)
204 3mwy_W Chromo domain-containin 79.1 5.6 0.00019 31.6 6.6 59 75-134 285-353 (800)
205 2va8_A SSO2462, SKI2-type heli 79.1 1.7 5.8E-05 33.9 3.6 52 76-134 75-129 (715)
206 1t3k_A Arath CDC25, dual-speci 78.9 3.5 0.00012 25.5 4.4 46 67-112 75-131 (152)
207 4g81_D Putative hexonate dehyd 78.2 10 0.00035 25.7 6.9 58 77-134 34-94 (255)
208 3ics_A Coenzyme A-disulfide re 77.9 1.8 6.1E-05 32.9 3.3 46 66-111 530-576 (588)
209 1okg_A Possible 3-mercaptopyru 77.7 3.9 0.00013 29.5 4.9 47 65-111 81-132 (373)
210 3olh_A MST, 3-mercaptopyruvate 77.1 1.7 5.7E-05 30.3 2.8 48 64-111 239-290 (302)
211 3hzu_A Thiosulfate sulfurtrans 77.1 2.1 7.1E-05 30.1 3.3 45 65-109 247-294 (318)
212 2xw6_A MGS, methylglyoxal synt 76.7 3.3 0.00011 25.5 3.7 73 54-135 6-83 (134)
213 3dmq_A RNA polymerase-associat 76.7 1.6 5.6E-05 35.5 2.9 63 69-134 193-256 (968)
214 1rhs_A Sulfur-substituted rhod 76.3 3.3 0.00011 28.6 4.1 46 65-110 78-130 (296)
215 1vp8_A Hypothetical protein AF 76.1 14 0.00048 24.3 7.1 64 68-137 36-109 (201)
216 2wlr_A Putative thiosulfate su 75.9 4.5 0.00015 29.5 4.9 45 66-110 345-393 (423)
217 1z3i_X Similar to RAD54-like; 75.6 18 0.00062 27.9 8.4 56 77-134 115-178 (644)
218 1t1v_A SH3BGRL3, SH3 domain-bi 74.8 8.5 0.00029 21.4 5.0 43 89-131 21-65 (93)
219 2yan_A Glutaredoxin-3; oxidore 74.7 9.5 0.00032 21.7 7.8 56 76-131 16-77 (105)
220 3dmn_A Putative DNA helicase; 74.6 13 0.00046 23.3 11.2 67 62-140 45-113 (174)
221 3gr1_A Protein PRGH; type III 73.7 8.8 0.0003 25.8 5.4 60 63-125 4-74 (227)
222 2xgj_A ATP-dependent RNA helic 73.2 3.5 0.00012 33.9 4.0 49 75-134 128-176 (1010)
223 2wci_A Glutaredoxin-4; redox-a 72.4 14 0.00047 22.5 7.0 64 65-131 26-95 (135)
224 3o8b_A HCV NS3 protease/helica 72.2 7.6 0.00026 30.4 5.5 48 76-134 257-305 (666)
225 1vmd_A MGS, methylglyoxal synt 71.9 5.9 0.0002 25.6 4.1 74 52-135 28-107 (178)
226 3fmp_B ATP-dependent RNA helic 70.5 4.2 0.00014 29.9 3.6 68 60-134 141-218 (479)
227 3sr3_A Microcin immunity prote 70.4 17 0.00057 25.9 6.6 47 87-134 31-87 (336)
228 1okg_A Possible 3-mercaptopyru 69.9 3.2 0.00011 30.0 2.8 36 76-111 246-282 (373)
229 2yvq_A Carbamoyl-phosphate syn 69.8 8.2 0.00028 23.7 4.4 73 54-135 27-105 (143)
230 1yt8_A Thiosulfate sulfurtrans 69.7 3.2 0.00011 31.4 2.9 36 75-110 62-98 (539)
231 2j48_A Two-component sensor ki 69.6 12 0.00041 20.7 6.0 70 61-135 11-84 (119)
232 2ct6_A SH3 domain-binding glut 69.5 11 0.00037 21.9 4.7 45 78-122 9-60 (111)
233 4es6_A Uroporphyrinogen-III sy 69.0 3.2 0.00011 27.9 2.6 76 58-134 110-193 (254)
234 1jq5_A Glycerol dehydrogenase; 68.3 29 0.001 24.7 8.3 65 67-132 23-92 (370)
235 3gr0_A Protein PRGH; type III 67.5 11 0.00036 24.8 4.7 47 76-125 26-74 (197)
236 1wik_A Thioredoxin-like protei 67.1 15 0.00053 21.0 7.6 56 76-131 14-75 (109)
237 3tla_A MCCF; serine protease, 66.9 25 0.00086 25.4 7.0 59 75-134 41-117 (371)
238 3jx9_A Putative phosphoheptose 66.8 11 0.00039 24.0 4.7 38 75-112 77-117 (170)
239 3tp9_A Beta-lactamase and rhod 66.8 3.9 0.00013 30.2 2.8 45 67-111 417-463 (474)
240 2qh8_A Uncharacterized protein 66.6 27 0.00093 23.7 7.3 50 79-133 45-97 (302)
241 3pnu_A Dihydroorotase; TIM bar 65.8 5.4 0.00018 28.6 3.3 26 111-136 238-263 (359)
242 3qmx_A Glutaredoxin A, glutare 65.8 16 0.00054 20.7 7.7 56 76-131 15-72 (99)
243 3olh_A MST, 3-mercaptopyruvate 65.5 7.9 0.00027 26.9 4.0 47 64-110 92-145 (302)
244 1wcw_A Uroporphyrinogen III sy 65.0 16 0.00054 24.4 5.4 70 62-134 118-191 (261)
245 1fov_A Glutaredoxin 3, GRX3; a 64.3 14 0.00047 19.4 6.9 53 79-131 3-56 (82)
246 3h1t_A Type I site-specific re 64.2 8.9 0.0003 29.1 4.4 48 75-134 234-282 (590)
247 1c25_A CDC25A; hydrolase, cell 64.1 4.1 0.00014 25.3 2.2 32 80-111 93-136 (161)
248 4e5s_A MCCFLIKE protein (BA_56 64.0 28 0.00097 24.6 6.7 48 87-134 30-86 (331)
249 3cg4_A Response regulator rece 63.3 20 0.00067 20.8 7.1 76 55-135 10-90 (142)
250 3is3_A 17BETA-hydroxysteroid d 63.2 31 0.0011 23.1 9.1 67 67-134 34-104 (270)
251 4h1h_A LMO1638 protein; MCCF-l 63.1 30 0.001 24.4 6.7 47 87-134 30-86 (327)
252 3fho_A ATP-dependent RNA helic 63.1 15 0.00052 27.3 5.4 51 76-134 189-243 (508)
253 1jr2_A Uroporphyrinogen-III sy 63.0 14 0.00049 25.2 5.0 76 58-134 137-218 (286)
254 4gdk_A Ubiquitin-like protein 63.0 18 0.00063 20.5 4.7 64 44-107 12-85 (91)
255 1qb0_A Protein (M-phase induce 62.4 6.2 0.00021 25.9 2.9 35 76-110 109-157 (211)
256 2yv1_A Succinyl-COA ligase [AD 62.1 31 0.0011 23.9 6.6 61 67-128 62-123 (294)
257 3iwt_A 178AA long hypothetical 61.8 27 0.00093 22.0 7.3 52 87-138 40-93 (178)
258 3mwd_B ATP-citrate synthase; A 61.5 30 0.001 24.6 6.4 64 65-128 68-133 (334)
259 3i42_A Response regulator rece 61.3 20 0.00069 20.3 6.2 77 55-136 6-87 (127)
260 3s5j_B Ribose-phosphate pyroph 60.7 23 0.00077 25.2 5.7 57 76-136 213-275 (326)
261 3jy6_A Transcriptional regulat 60.7 33 0.0011 22.7 7.2 37 91-131 54-90 (276)
262 3gx8_A Monothiol glutaredoxin- 60.6 23 0.0008 20.8 8.4 56 75-130 14-78 (121)
263 3e61_A Putative transcriptiona 60.5 33 0.0011 22.6 6.6 16 93-108 57-72 (277)
264 4aaj_A N-(5'-phosphoribosyl)an 60.5 35 0.0012 22.8 8.4 57 64-122 58-114 (228)
265 3eod_A Protein HNR; response r 60.5 21 0.00073 20.3 7.0 76 55-135 10-88 (130)
266 2qxy_A Response regulator; reg 60.5 22 0.00077 20.6 6.8 74 56-135 8-84 (142)
267 3o74_A Fructose transport syst 59.8 34 0.0012 22.4 6.7 15 94-108 52-66 (272)
268 3d8t_A Uroporphyrinogen-III sy 59.6 21 0.00071 24.4 5.3 56 78-134 158-216 (286)
269 3l49_A ABC sugar (ribose) tran 59.4 34 0.0012 22.7 6.3 37 94-131 55-91 (291)
270 3dah_A Ribose-phosphate pyroph 59.4 32 0.0011 24.3 6.3 58 75-136 215-278 (319)
271 2z26_A Dihydroorotase, dhoase; 58.9 8.6 0.00029 27.2 3.3 25 112-136 228-252 (347)
272 3kke_A LACI family transcripti 58.8 38 0.0013 22.8 6.5 17 92-108 63-79 (303)
273 3grc_A Sensor protein, kinase; 58.7 24 0.00082 20.4 6.8 75 55-134 9-88 (140)
274 1o2d_A Alcohol dehydrogenase, 58.5 47 0.0016 23.7 8.8 69 63-132 28-104 (371)
275 3gt7_A Sensor protein; structu 58.4 27 0.00091 20.8 6.8 75 55-134 10-89 (154)
276 2yv2_A Succinyl-COA synthetase 58.3 43 0.0015 23.2 6.8 61 67-128 62-124 (297)
277 2qr3_A Two-component system re 58.3 24 0.00083 20.3 6.1 75 56-135 7-89 (140)
278 3w1s_C Ubiquitin-like protein 58.2 23 0.0008 20.1 5.4 63 44-106 15-84 (91)
279 2l82_A Designed protein OR32; 58.2 26 0.0009 20.7 7.9 71 64-134 65-137 (162)
280 3m9w_A D-xylose-binding peripl 58.2 40 0.0014 22.8 7.0 13 118-130 75-87 (313)
281 3hs3_A Ribose operon repressor 58.0 38 0.0013 22.5 6.8 45 89-133 29-74 (277)
282 1ta9_A Glycerol dehydrogenase; 57.4 54 0.0018 24.3 7.4 68 64-132 79-151 (450)
283 3tb6_A Arabinose metabolism tr 57.2 40 0.0014 22.4 6.8 40 92-131 63-104 (298)
284 3uug_A Multiple sugar-binding 57.0 34 0.0012 23.3 6.1 11 119-129 77-87 (330)
285 3hv2_A Response regulator/HD d 56.7 28 0.00097 20.6 6.3 77 54-135 16-95 (153)
286 3e3m_A Transcriptional regulat 56.6 47 0.0016 23.0 7.0 41 92-132 92-132 (355)
287 2khp_A Glutaredoxin; thioredox 56.6 22 0.00074 19.2 7.7 54 78-131 7-61 (92)
288 3oid_A Enoyl-[acyl-carrier-pro 56.6 41 0.0014 22.4 9.2 58 77-134 29-90 (258)
289 3ox4_A Alcohol dehydrogenase 2 56.6 52 0.0018 23.6 8.3 71 62-132 17-94 (383)
290 1byk_A Protein (trehalose oper 56.5 38 0.0013 22.0 6.9 40 93-132 25-64 (255)
291 2rjn_A Response regulator rece 56.2 29 0.00099 20.5 6.9 76 55-135 10-88 (154)
292 1qkk_A DCTD, C4-dicarboxylate 56.0 29 0.001 20.5 6.0 70 61-135 13-84 (155)
293 3r1i_A Short-chain type dehydr 55.9 44 0.0015 22.5 9.0 59 76-134 56-117 (276)
294 1qle_D Cytochrome AA3, ccytoch 55.6 6.7 0.00023 19.0 1.6 20 105-124 3-22 (43)
295 1rrm_A Lactaldehyde reductase; 55.5 54 0.0018 23.5 7.5 68 65-132 20-94 (386)
296 1oi7_A Succinyl-COA synthetase 55.5 48 0.0016 22.8 7.0 61 67-128 56-117 (288)
297 3osu_A 3-oxoacyl-[acyl-carrier 54.9 42 0.0014 22.0 9.3 58 77-134 29-90 (246)
298 3qhq_A CSN2, SAG0897 family cr 54.6 46 0.0016 22.3 6.2 48 62-109 147-199 (229)
299 3h5o_A Transcriptional regulat 54.6 49 0.0017 22.7 7.3 45 89-133 81-125 (339)
300 3kjx_A Transcriptional regulat 53.9 51 0.0017 22.7 6.7 36 94-132 118-153 (344)
301 1wz3_A Autophagy 12B, ATG12B, 53.8 23 0.00079 20.3 4.0 60 47-106 23-89 (96)
302 2dri_A D-ribose-binding protei 53.5 45 0.0015 22.0 6.3 13 119-131 75-87 (271)
303 3mw8_A Uroporphyrinogen-III sy 53.5 7.4 0.00025 25.8 2.1 71 63-134 105-180 (240)
304 1zl0_A Hypothetical protein PA 53.3 30 0.001 24.3 5.3 48 87-134 32-88 (311)
305 3lrt_A Ribose-phosphate pyroph 52.9 52 0.0018 22.8 6.4 56 76-136 203-264 (286)
306 3egc_A Putative ribose operon 52.7 48 0.0016 22.0 8.2 38 95-132 33-70 (291)
307 3r2u_A Metallo-beta-lactamase 52.7 2.9 0.0001 31.0 0.0 37 76-112 425-462 (466)
308 3s5u_A Putative uncharacterize 52.5 49 0.0017 22.0 6.5 49 62-110 147-200 (220)
309 3ijp_A DHPR, dihydrodipicolina 52.2 56 0.0019 22.7 6.9 57 77-135 89-145 (288)
310 3lte_A Response regulator; str 52.2 31 0.001 19.6 6.5 75 55-134 9-88 (132)
311 4ggo_A Trans-2-enoyl-COA reduc 52.0 45 0.0015 24.5 6.1 50 88-137 99-151 (401)
312 2gkg_A Response regulator homo 51.9 30 0.001 19.4 5.4 73 55-132 8-86 (127)
313 2zay_A Response regulator rece 51.8 29 0.001 20.2 4.6 76 55-135 11-91 (147)
314 4e3z_A Putative oxidoreductase 51.7 51 0.0017 22.0 9.5 55 80-134 55-112 (272)
315 3t6k_A Response regulator rece 51.3 34 0.0011 19.8 6.8 76 55-135 7-87 (136)
316 1t57_A Conserved protein MTH16 51.2 19 0.00066 23.7 3.7 64 69-137 45-116 (206)
317 3bfj_A 1,3-propanediol oxidore 51.1 65 0.0022 23.1 8.1 68 65-132 22-98 (387)
318 3k4h_A Putative transcriptiona 50.9 42 0.0014 22.3 5.7 37 92-131 61-97 (292)
319 4hp8_A 2-deoxy-D-gluconate 3-d 50.8 5.1 0.00018 27.2 1.0 46 86-133 41-86 (247)
320 3gaf_A 7-alpha-hydroxysteroid 50.3 52 0.0018 21.8 10.1 59 76-134 36-97 (256)
321 2ioy_A Periplasmic sugar-bindi 50.2 53 0.0018 21.8 6.4 37 94-131 51-87 (283)
322 2owl_A Recombination-associate 50.1 54 0.0019 23.0 6.1 39 77-115 135-175 (303)
323 3lft_A Uncharacterized protein 49.3 57 0.0019 21.9 7.4 64 65-133 21-90 (295)
324 2lqo_A Putative glutaredoxin R 49.2 33 0.0011 19.2 6.5 54 78-132 5-61 (92)
325 3imf_A Short chain dehydrogena 49.1 55 0.0019 21.6 9.2 59 76-134 30-91 (257)
326 3v2g_A 3-oxoacyl-[acyl-carrier 49.0 57 0.002 21.9 9.3 58 77-134 56-117 (271)
327 3hcw_A Maltose operon transcri 49.0 44 0.0015 22.4 5.6 37 92-131 60-96 (295)
328 1pii_A N-(5'phosphoribosyl)ant 49.0 80 0.0027 23.5 8.1 52 64-117 293-344 (452)
329 3flu_A DHDPS, dihydrodipicolin 48.8 63 0.0022 22.3 6.5 14 101-114 77-90 (297)
330 2fep_A Catabolite control prot 48.7 57 0.002 21.7 6.7 37 91-131 63-100 (289)
331 3q87_B N6 adenine specific DNA 48.6 45 0.0015 20.5 5.8 45 63-107 103-147 (170)
332 2owy_A Recombination-associate 48.3 54 0.0019 23.0 5.9 39 77-115 135-175 (306)
333 2pln_A HP1043, response regula 48.2 37 0.0013 19.5 6.5 72 55-135 21-95 (137)
334 3rui_B Autophagy-related prote 48.2 42 0.0014 20.0 5.4 62 37-98 32-102 (118)
335 3c3k_A Alanine racemase; struc 48.2 58 0.002 21.6 6.6 16 93-108 57-72 (285)
336 3l6u_A ABC-type sugar transpor 48.1 57 0.002 21.6 7.5 37 94-131 58-94 (293)
337 2b4a_A BH3024; flavodoxin-like 48.0 38 0.0013 19.5 6.5 74 55-133 18-95 (138)
338 2ji4_A Phosphoribosyl pyrophos 47.9 46 0.0016 24.1 5.7 56 77-136 273-334 (379)
339 3ors_A N5-carboxyaminoimidazol 47.9 51 0.0017 20.9 8.1 58 77-134 4-66 (163)
340 2wem_A Glutaredoxin-related pr 47.5 41 0.0014 19.7 9.3 63 66-131 12-81 (118)
341 1jr5_A 10 kDa anti-sigma facto 47.5 6 0.00021 22.4 0.8 21 108-128 59-79 (90)
342 2a2k_A M-phase inducer phospha 47.3 12 0.00041 23.4 2.3 35 76-110 89-137 (175)
343 4dmm_A 3-oxoacyl-[acyl-carrier 47.2 61 0.0021 21.7 9.3 67 67-134 44-114 (269)
344 3ucx_A Short chain dehydrogena 47.1 60 0.0021 21.5 10.0 59 76-134 35-96 (264)
345 3kto_A Response regulator rece 47.1 30 0.001 20.0 4.0 76 55-135 9-89 (136)
346 2wkj_A N-acetylneuraminate lya 46.7 70 0.0024 22.2 6.4 12 101-112 81-92 (303)
347 4f3y_A DHPR, dihydrodipicolina 46.4 68 0.0023 22.0 6.8 56 78-135 75-130 (272)
348 8tfv_A Protein (thanatin); bac 46.4 5.3 0.00018 15.6 0.3 8 79-86 7-14 (21)
349 3a5f_A Dihydrodipicolinate syn 46.4 69 0.0024 22.0 6.2 13 101-113 71-83 (291)
350 1gud_A ALBP, D-allose-binding 46.1 63 0.0022 21.5 6.1 13 119-131 77-89 (288)
351 2iks_A DNA-binding transcripti 46.1 63 0.0022 21.5 6.7 38 92-131 68-105 (293)
352 3f6p_A Transcriptional regulat 45.8 39 0.0013 19.0 7.0 75 55-134 5-81 (120)
353 8abp_A L-arabinose-binding pro 45.7 65 0.0022 21.5 6.3 34 98-132 55-88 (306)
354 2ojp_A DHDPS, dihydrodipicolin 45.6 70 0.0024 22.0 6.2 14 101-114 71-84 (292)
355 3d8u_A PURR transcriptional re 45.5 57 0.002 21.4 5.6 39 91-132 50-88 (275)
356 3l21_A DHDPS, dihydrodipicolin 45.3 74 0.0025 22.1 6.4 35 100-134 84-119 (304)
357 3h7a_A Short chain dehydrogena 45.2 64 0.0022 21.3 9.1 59 76-134 31-91 (252)
358 3dbi_A Sugar-binding transcrip 45.0 72 0.0025 21.8 8.8 41 92-132 85-125 (338)
359 1hzm_A Dual specificity protei 44.5 5 0.00017 24.6 0.1 37 75-111 91-137 (154)
360 3ce9_A Glycerol dehydrogenase; 44.5 80 0.0027 22.2 8.6 65 67-132 25-94 (354)
361 3op3_A M-phase inducer phospha 44.4 10 0.00034 25.2 1.6 32 79-110 127-170 (216)
362 3u5t_A 3-oxoacyl-[acyl-carrier 44.4 68 0.0023 21.4 8.4 58 77-134 52-113 (267)
363 3bvp_A INT, TP901-1 integrase; 44.3 49 0.0017 19.7 5.3 22 114-135 59-80 (138)
364 4dik_A Flavoprotein; TM0755, e 44.3 75 0.0026 23.1 6.4 60 79-139 269-333 (410)
365 3lp6_A Phosphoribosylaminoimid 44.2 61 0.0021 20.8 7.5 59 76-134 7-70 (174)
366 2rdm_A Response regulator rece 44.0 43 0.0015 18.9 7.0 75 56-135 9-88 (132)
367 2hqb_A Transcriptional activat 44.0 73 0.0025 21.6 6.9 19 91-109 54-72 (296)
368 1qpz_A PURA, protein (purine n 43.9 75 0.0026 21.8 6.7 17 93-109 107-123 (340)
369 3b4u_A Dihydrodipicolinate syn 43.7 77 0.0026 21.8 6.7 12 102-113 74-85 (294)
370 2wm8_A MDP-1, magnesium-depend 43.7 56 0.0019 20.2 9.6 106 4-127 75-184 (187)
371 1j5p_A Aspartate dehydrogenase 43.7 68 0.0023 21.8 5.7 57 77-133 61-119 (253)
372 4ibo_A Gluconate dehydrogenase 43.6 71 0.0024 21.4 8.7 59 76-134 50-111 (271)
373 2lnd_A De novo designed protei 43.5 41 0.0014 18.6 7.4 47 75-122 50-98 (112)
374 3uhj_A Probable glycerol dehyd 43.5 70 0.0024 23.1 6.1 64 67-132 44-112 (387)
375 3o1i_D Periplasmic protein TOR 43.4 70 0.0024 21.2 6.2 34 98-131 33-68 (304)
376 1o5k_A DHDPS, dihydrodipicolin 43.4 80 0.0027 21.9 6.6 13 101-113 82-94 (306)
377 3rkr_A Short chain oxidoreduct 43.4 69 0.0024 21.2 10.2 59 76-134 53-114 (262)
378 3qiv_A Short-chain dehydrogena 43.4 67 0.0023 21.0 10.2 59 76-134 33-94 (253)
379 2o20_A Catabolite control prot 43.1 77 0.0026 21.6 6.7 12 96-107 115-126 (332)
380 4da9_A Short-chain dehydrogena 42.9 74 0.0025 21.4 8.7 59 76-134 53-115 (280)
381 3qze_A DHDPS, dihydrodipicolin 42.9 72 0.0025 22.3 5.9 14 101-114 93-106 (314)
382 2r8w_A AGR_C_1641P; APC7498, d 42.7 81 0.0028 22.2 6.2 13 101-113 104-116 (332)
383 3m95_A Autophagy related prote 42.6 54 0.0019 19.7 5.3 61 37-97 38-107 (125)
384 1mvo_A PHOP response regulator 42.5 46 0.0016 18.9 6.0 75 56-135 7-84 (136)
385 1xky_A Dihydrodipicolinate syn 42.5 82 0.0028 21.8 6.9 14 101-114 82-95 (301)
386 3re1_A Uroporphyrinogen-III sy 42.4 3.9 0.00013 27.9 -0.7 60 74-134 139-201 (269)
387 3fni_A Putative diflavin flavo 42.4 58 0.002 20.0 5.4 25 84-108 17-41 (159)
388 3huu_A Transcription regulator 42.3 75 0.0026 21.3 7.2 14 94-107 77-90 (305)
389 3cpr_A Dihydrodipicolinate syn 42.1 84 0.0029 21.8 6.8 34 101-134 86-120 (304)
390 3p9z_A Uroporphyrinogen III co 42.1 4.4 0.00015 26.9 -0.4 59 74-134 108-169 (229)
391 2rgy_A Transcriptional regulat 42.1 65 0.0022 21.4 5.6 37 92-131 59-95 (290)
392 3m6m_D Sensory/regulatory prot 42.1 51 0.0017 19.2 5.9 76 54-134 16-98 (143)
393 2qu7_A Putative transcriptiona 42.1 73 0.0025 21.1 6.6 38 95-132 32-69 (288)
394 2v9d_A YAGE; dihydrodipicolini 41.9 78 0.0027 22.5 6.0 12 102-113 102-113 (343)
395 3trh_A Phosphoribosylaminoimid 41.8 66 0.0023 20.5 7.6 58 77-134 7-69 (169)
396 2vk2_A YTFQ, ABC transporter p 41.8 77 0.0026 21.2 6.0 39 93-132 51-89 (306)
397 2yxg_A DHDPS, dihydrodipicolin 41.7 83 0.0028 21.6 6.7 13 101-113 70-82 (289)
398 2ehh_A DHDPS, dihydrodipicolin 41.7 83 0.0029 21.6 6.7 34 101-134 70-104 (294)
399 1aba_A Glutaredoxin; electron 41.7 41 0.0014 18.0 8.1 48 85-132 13-70 (87)
400 1f6k_A N-acetylneuraminate lya 41.6 84 0.0029 21.6 6.4 14 101-114 74-87 (293)
401 3ctp_A Periplasmic binding pro 41.5 82 0.0028 21.5 6.6 42 90-131 80-121 (330)
402 3tak_A DHDPS, dihydrodipicolin 41.2 85 0.0029 21.6 6.2 13 101-113 71-83 (291)
403 1ofu_X SULA, hypothetical prot 40.9 56 0.0019 19.4 6.8 66 65-132 18-89 (119)
404 3fkr_A L-2-keto-3-deoxyarabona 40.9 74 0.0025 22.1 5.7 14 101-114 78-91 (309)
405 3v8b_A Putative dehydrogenase, 40.9 81 0.0028 21.3 9.6 59 76-134 52-113 (283)
406 3g1w_A Sugar ABC transporter; 40.6 71 0.0024 21.3 5.6 56 76-132 34-92 (305)
407 2fn9_A Ribose ABC transporter, 40.6 77 0.0026 20.9 6.7 40 91-131 49-88 (290)
408 3bil_A Probable LACI-family tr 40.4 88 0.003 21.6 6.1 7 96-102 118-124 (348)
409 3ksm_A ABC-type sugar transpor 40.4 59 0.002 21.2 5.1 40 92-132 50-90 (276)
410 3sju_A Keto reductase; short-c 40.3 82 0.0028 21.1 9.9 59 76-134 48-109 (279)
411 1u11_A PURE (N5-carboxyaminoim 40.3 73 0.0025 20.6 8.3 59 76-134 21-84 (182)
412 4dpp_A DHDPS 2, dihydrodipicol 40.3 1E+02 0.0035 22.2 6.5 13 110-122 109-121 (360)
413 1t70_A Phosphatase; crystal, X 40.1 26 0.00088 23.9 3.2 45 87-134 129-173 (255)
414 1b4b_A Arginine repressor; cor 40.1 42 0.0015 17.8 4.7 35 64-98 25-69 (71)
415 1v5x_A PRA isomerase, phosphor 40.1 76 0.0026 20.7 7.5 50 64-115 39-90 (203)
416 3h5d_A DHDPS, dihydrodipicolin 40.1 83 0.0028 21.9 5.9 34 101-134 77-112 (311)
417 1wma_A Carbonyl reductase [NAD 40.1 76 0.0026 20.7 8.8 59 76-134 29-90 (276)
418 3miz_A Putative transcriptiona 40.0 81 0.0028 21.0 9.0 48 87-134 31-78 (301)
419 3kuu_A Phosphoribosylaminoimid 39.8 73 0.0025 20.4 8.1 58 77-134 13-75 (174)
420 3cfy_A Putative LUXO repressor 39.7 54 0.0019 18.9 4.8 76 55-135 7-85 (137)
421 3lyl_A 3-oxoacyl-(acyl-carrier 39.7 76 0.0026 20.6 10.1 59 76-134 29-90 (247)
422 3daq_A DHDPS, dihydrodipicolin 39.5 91 0.0031 21.4 6.2 14 101-114 72-85 (292)
423 3edm_A Short chain dehydrogena 39.3 81 0.0028 20.8 8.3 58 77-134 33-94 (259)
424 1p9l_A Dihydrodipicolinate red 39.3 86 0.0029 21.1 7.0 58 77-134 46-104 (245)
425 3h9d_A ATG8, microtubule-assoc 39.3 31 0.001 20.6 3.0 61 37-97 33-102 (119)
426 1dbq_A Purine repressor; trans 39.2 81 0.0028 20.8 7.0 19 91-109 54-72 (289)
427 2z06_A Putative uncharacterize 39.2 56 0.0019 22.2 4.7 45 86-133 125-169 (252)
428 3qfe_A Putative dihydrodipicol 39.1 95 0.0033 21.7 6.1 14 101-114 81-94 (318)
429 3cg0_A Response regulator rece 39.0 54 0.0018 18.7 5.8 77 55-135 12-91 (140)
430 1dc7_A NTRC, nitrogen regulati 38.8 50 0.0017 18.3 4.1 70 60-134 12-83 (124)
431 3si9_A DHDPS, dihydrodipicolin 38.7 83 0.0028 22.0 5.7 14 101-114 92-105 (315)
432 2rfg_A Dihydrodipicolinate syn 38.6 73 0.0025 22.0 5.4 13 110-122 50-62 (297)
433 2zfz_A Arginine repressor; DNA 38.5 48 0.0016 18.0 3.6 35 64-98 33-77 (79)
434 1nsj_A PRAI, phosphoribosyl an 38.5 81 0.0028 20.6 7.1 49 64-114 40-90 (205)
435 4b3f_X DNA-binding protein smu 38.4 88 0.003 24.1 6.3 48 59-106 214-263 (646)
436 3gbv_A Putative LACI-family tr 38.3 85 0.0029 20.8 7.1 51 87-137 156-211 (304)
437 2fkc_A R.HINP1I restriction en 38.3 3.2 0.00011 27.5 -1.5 33 105-139 136-169 (247)
438 3hdv_A Response regulator; PSI 38.3 55 0.0019 18.6 6.2 76 55-135 10-90 (136)
439 3snk_A Response regulator CHEY 38.0 42 0.0014 19.2 3.7 78 54-135 16-96 (135)
440 1ae1_A Tropinone reductase-I; 38.0 88 0.003 20.8 10.0 59 76-134 45-107 (273)
441 1dku_A Protein (phosphoribosyl 37.8 54 0.0019 23.0 4.6 57 76-136 217-279 (317)
442 1xmp_A PURE, phosphoribosylami 37.8 78 0.0027 20.2 8.1 59 76-134 11-74 (170)
443 3uw2_A Phosphoglucomutase/phos 37.8 1.3E+02 0.0043 22.6 6.8 58 77-134 195-264 (485)
444 3gl9_A Response regulator; bet 37.8 55 0.0019 18.4 6.7 76 55-135 5-85 (122)
445 3rot_A ABC sugar transporter, 37.7 89 0.0031 20.8 6.9 12 119-130 79-90 (297)
446 3bbl_A Regulatory protein of L 37.4 48 0.0017 22.0 4.3 38 91-131 55-92 (287)
447 3ilx_A First ORF in transposon 37.3 69 0.0024 19.4 6.3 22 114-135 51-72 (143)
448 3rqi_A Response regulator prot 37.3 72 0.0025 19.6 6.9 76 55-135 10-88 (184)
449 1mb3_A Cell division response 37.3 54 0.0019 18.2 6.0 75 56-135 5-84 (124)
450 3hjh_A Transcription-repair-co 37.2 33 0.0011 25.7 3.6 41 64-105 371-411 (483)
451 3na8_A Putative dihydrodipicol 37.2 78 0.0027 22.1 5.4 14 101-114 94-107 (315)
452 2hmc_A AGR_L_411P, dihydrodipi 37.1 94 0.0032 22.1 5.8 23 110-132 76-98 (344)
453 3m5v_A DHDPS, dihydrodipicolin 37.0 1E+02 0.0035 21.3 6.0 34 101-134 78-112 (301)
454 2vc6_A MOSA, dihydrodipicolina 36.9 68 0.0023 22.1 5.0 13 101-113 70-82 (292)
455 3m9w_A D-xylose-binding peripl 36.9 68 0.0023 21.6 5.0 39 64-102 175-213 (313)
456 2l69_A Rossmann 2X3 fold prote 36.9 60 0.002 18.6 7.9 41 68-108 68-109 (134)
457 1byk_A Protein (trehalose oper 36.8 85 0.0029 20.3 8.7 71 64-134 103-180 (255)
458 3lua_A Response regulator rece 36.7 61 0.0021 18.6 6.2 77 55-135 7-90 (140)
459 2fvy_A D-galactose-binding per 36.6 93 0.0032 20.7 6.6 40 92-132 51-90 (309)
460 3h5i_A Response regulator/sens 36.5 62 0.0021 18.6 6.9 77 55-136 8-88 (140)
461 3s5o_A 4-hydroxy-2-oxoglutarat 36.3 95 0.0033 21.5 5.7 34 101-134 84-118 (307)
462 2p5m_A Arginine repressor; alp 36.0 55 0.0019 17.9 5.0 35 64-98 37-81 (83)
463 2hsg_A Glucose-resistance amyl 35.9 76 0.0026 21.6 5.2 14 118-131 131-144 (332)
464 2pl1_A Transcriptional regulat 35.9 57 0.0019 18.0 6.4 68 63-135 12-81 (121)
465 3tox_A Short chain dehydrogena 35.8 99 0.0034 20.8 8.2 59 76-134 32-93 (280)
466 2a9o_A Response regulator; ess 35.7 56 0.0019 17.9 5.7 68 63-135 13-81 (120)
467 2q5c_A NTRC family transcripti 35.6 88 0.003 20.1 8.3 52 78-132 6-57 (196)
468 2vsw_A Dual specificity protei 35.5 5.6 0.00019 24.4 -0.7 36 76-111 78-122 (153)
469 1xhf_A DYE resistance, aerobic 35.4 59 0.002 18.0 6.7 75 56-135 7-83 (123)
470 2klx_A Glutaredoxin; thioredox 35.4 53 0.0018 17.5 6.0 51 79-131 8-60 (89)
471 1vm6_A DHPR, dihydrodipicolina 35.3 1E+02 0.0034 20.7 6.6 57 77-135 54-110 (228)
472 3d0c_A Dihydrodipicolinate syn 35.3 80 0.0027 22.0 5.2 13 101-114 82-94 (314)
473 3tfo_A Putative 3-oxoacyl-(acy 35.2 99 0.0034 20.6 10.2 59 76-134 28-89 (264)
474 4eys_A MCCC family protein; MC 35.2 58 0.002 23.1 4.5 47 88-134 26-81 (346)
475 3tjr_A Short chain dehydrogena 35.2 1E+02 0.0036 20.9 10.0 59 76-134 55-116 (301)
476 2y7e_A 3-keto-5-aminohexanoate 35.2 51 0.0018 22.8 4.1 30 80-109 123-152 (282)
477 3msz_A Glutaredoxin 1; alpha-b 35.1 51 0.0018 17.3 6.5 35 78-112 5-40 (89)
478 3a10_A Response regulator; pho 35.1 57 0.002 17.8 6.4 69 62-135 12-82 (116)
479 3utn_X Thiosulfate sulfurtrans 34.9 94 0.0032 21.9 5.5 35 76-110 275-310 (327)
480 4iin_A 3-ketoacyl-acyl carrier 34.8 99 0.0034 20.5 9.3 59 76-134 53-115 (271)
481 3hdg_A Uncharacterized protein 34.8 65 0.0022 18.3 5.8 76 55-135 10-88 (137)
482 3dz1_A Dihydrodipicolinate syn 34.7 1.1E+02 0.0039 21.2 6.1 13 101-113 77-89 (313)
483 3jvd_A Transcriptional regulat 34.7 94 0.0032 21.3 5.5 45 89-134 83-127 (333)
484 3sxu_A DNA polymerase III subu 34.7 81 0.0028 19.5 5.4 36 63-98 24-61 (150)
485 3e05_A Precorrin-6Y C5,15-meth 34.7 37 0.0013 21.4 3.2 42 62-103 120-162 (204)
486 2rjo_A Twin-arginine transloca 34.5 91 0.0031 21.2 5.4 39 92-131 53-93 (332)
487 3jux_A Protein translocase sub 34.5 1.5E+02 0.0051 24.0 6.9 45 64-108 104-152 (822)
488 1k68_A Phytochrome response re 34.4 64 0.0022 18.2 7.0 77 56-135 6-94 (140)
489 3e96_A Dihydrodipicolinate syn 34.4 72 0.0025 22.3 4.8 12 111-122 63-74 (316)
490 2qvg_A Two component response 34.3 67 0.0023 18.4 6.5 73 60-135 16-98 (143)
491 3qle_A TIM50P; chaperone, mito 34.3 31 0.0011 22.6 2.7 34 2-35 64-97 (204)
492 3oaa_A ATP synthase subunit al 34.2 1.5E+02 0.0052 22.5 7.4 51 76-126 218-279 (513)
493 3rss_A Putative uncharacterize 34.2 1.5E+02 0.0051 22.3 7.6 48 76-124 52-104 (502)
494 3gyb_A Transcriptional regulat 34.0 27 0.00092 23.1 2.5 42 89-131 24-65 (280)
495 2lci_A Protein OR36; structura 34.0 67 0.0023 18.3 10.9 60 75-134 50-109 (134)
496 3r26_A Molybdate-binding perip 34.0 88 0.003 20.4 5.0 52 78-134 8-63 (237)
497 3gv0_A Transcriptional regulat 33.9 59 0.002 21.6 4.3 40 90-132 56-95 (288)
498 3dmy_A Protein FDRA; predicted 33.8 1.4E+02 0.0047 22.4 6.4 53 76-129 37-89 (480)
499 3ftp_A 3-oxoacyl-[acyl-carrier 33.5 1.1E+02 0.0036 20.5 9.2 59 76-134 52-113 (270)
500 3uoa_B Mucosa-associated lymph 33.5 1.1E+02 0.0037 22.3 5.7 39 85-124 25-63 (390)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.94 E-value=2.4e-25 Score=164.83 Aligned_cols=138 Identities=22% Similarity=0.310 Sum_probs=125.0
Q ss_pred HHHHHhhC--CCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCc
Q psy13287 2 LDHVISIL--PHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQ 78 (140)
Q Consensus 2 l~~il~~~--~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~ 78 (140)
+.+|+..+ +++.|++++|||+|+.+..+...++.++..+.+. ......++.+.+..+....|...|.+++..... +
T Consensus 224 ~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~ 302 (434)
T 2db3_A 224 MRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQAD-G 302 (434)
T ss_dssp HHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCT-T
T ss_pred HHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCC-C
Confidence 45666664 5689999999999999999999999998888776 445678899999999999999999999988654 4
Q ss_pred EEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 79 SIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 79 ~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+||||++++.++.+++.|++.++.+..+||++++.+|..++++|++|+.+||||||+++||+
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGl 364 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGL 364 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSC
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999996
No 2
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.92 E-value=9.5e-24 Score=154.02 Aligned_cols=139 Identities=72% Similarity=1.158 Sum_probs=128.4
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEE
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSII 81 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lI 81 (140)
+..++..+++..|++++|||+|+.+.+.....+.++..+........+++.+++..++...|...+..++...+.+++||
T Consensus 184 ~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lV 263 (400)
T 1s2m_A 184 IEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAII 263 (400)
T ss_dssp HHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEE
Confidence 45677778888999999999999999999999998887777666677889999999999999999999999888899999
Q ss_pred EeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 82 FCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 82 F~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||++++.++.+++.|++.++.+..+||++++.+|..++++|++|+.++||||+++++|+
T Consensus 264 f~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 322 (400)
T 1s2m_A 264 FCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGI 322 (400)
T ss_dssp ECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSC
T ss_pred EEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999996
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.92 E-value=2.5e-24 Score=157.62 Aligned_cols=139 Identities=32% Similarity=0.586 Sum_probs=125.5
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccc-hHHHHHHHHhhCCCCcE
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQ-KVHCLNTLFSKLQINQS 79 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~ 79 (140)
+..+++.++++.|++++|||+|+.+.+....++.+|..+... .....+++.+.+..++..+ |...+.+++.....+++
T Consensus 200 ~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~ 279 (410)
T 2j0s_A 200 IYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA 279 (410)
T ss_dssp HHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcE
Confidence 456788888899999999999999888888888888887776 3456778899888887654 89999999988888899
Q ss_pred EEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 80 IIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 80 lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||||++++.++.+++.|++.++.+..+||++++.+|..++++|++|+.++||||+++++|+
T Consensus 280 lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 340 (410)
T 2j0s_A 280 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGL 340 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSC
T ss_pred EEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcC
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 4
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.92 E-value=2.3e-23 Score=151.34 Aligned_cols=139 Identities=31% Similarity=0.488 Sum_probs=126.9
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCC--cccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcE
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLME--ELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQS 79 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 79 (140)
+..++...+.+.|++++|||+++.+......++.++..+.... ......+.+++..+....|...+.+++...+.+++
T Consensus 174 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 253 (391)
T 1xti_A 174 VQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQV 253 (391)
T ss_dssp HHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEE
T ss_pred HHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcE
Confidence 4567777888999999999999999999999999988887763 34567788899888999999999999998888999
Q ss_pred EEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 80 IIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 80 lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||||++++.++.+++.|++.++.+..+||++++++|..++++|++|+.++||||+++++|+
T Consensus 254 lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 314 (391)
T 1xti_A 254 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGM 314 (391)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCB
T ss_pred EEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 5
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.92 E-value=1.6e-23 Score=153.03 Aligned_cols=138 Identities=30% Similarity=0.492 Sum_probs=124.9
Q ss_pred HHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCc-cchHHHHHHHHhhCCCCcEE
Q psy13287 3 DHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQE-RQKVHCLNTLFSKLQINQSI 80 (140)
Q Consensus 3 ~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~l 80 (140)
..++..++.+.|++++|||+++.+......++.++..+... .......+.+.+..+.. ..+...+.+++.....+++|
T Consensus 191 ~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 270 (412)
T 3fht_A 191 IRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAM 270 (412)
T ss_dssp HHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEE
T ss_pred HHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEE
Confidence 45677778889999999999999999999999998888776 44567788888887754 57889999999888889999
Q ss_pred EEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 81 IFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 81 IF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
|||++++.++.+++.|++.++.+..+||++++++|..++++|++|+.++||||+++++|+
T Consensus 271 vf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 330 (412)
T 3fht_A 271 IFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGI 330 (412)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSC
T ss_pred EEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCC
Confidence 999999999999999999999999999999999999999999999999999999999996
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.92 E-value=2.2e-23 Score=152.74 Aligned_cols=129 Identities=24% Similarity=0.382 Sum_probs=117.8
Q ss_pred CCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhC-CCCcEEEEeCchHHH
Q psy13287 12 ERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKL-QINQSIIFCNSTQRV 89 (140)
Q Consensus 12 ~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~ 89 (140)
..|++++|||+|+.+......++.++..+... .....+++.+.+..++..+|...+.++++.. ..+++||||++++.+
T Consensus 210 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~ 289 (417)
T 2i4i_A 210 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGA 289 (417)
T ss_dssp TBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHH
T ss_pred CcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHH
Confidence 67999999999999999999999988877776 4457788999999999999999999999887 467899999999999
Q ss_pred HHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 90 ELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 90 ~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+.+++.|++.++.+..+||++++++|..++++|++|+.++||||+++++|+
T Consensus 290 ~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gi 340 (417)
T 2i4i_A 290 DSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGL 340 (417)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTS
T ss_pred HHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCC
Confidence 999999999999999999999999999999999999999999999999996
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=153.81 Aligned_cols=139 Identities=31% Similarity=0.522 Sum_probs=117.9
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCc-cchHHHHHHHHhhCCCCcE
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQE-RQKVHCLNTLFSKLQINQS 79 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~ 79 (140)
+..++..++++.|++++|||+++.+......++.++..+... .......+.+.+..+.. ..|...+.+++.....+++
T Consensus 204 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 283 (414)
T 3eiq_A 204 IYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQA 283 (414)
T ss_dssp HHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSC
T ss_pred HHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcE
Confidence 456788888899999999999999999999999998887776 44566778888887765 4589999999998888999
Q ss_pred EEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 80 IIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 80 lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||||++++.++.+++.|++.++.+..+||++++++|..++++|++|+.++||||+++++|+
T Consensus 284 lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 344 (414)
T 3eiq_A 284 VIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGI 344 (414)
T ss_dssp EEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--C
T ss_pred EEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.91 E-value=8.5e-23 Score=148.22 Aligned_cols=138 Identities=25% Similarity=0.451 Sum_probs=123.3
Q ss_pred HHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcC-ccchHHHHHHHHhhCCCCcEE
Q psy13287 3 DHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKLQINQSI 80 (140)
Q Consensus 3 ~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~l 80 (140)
..+...++.+.|++++|||+++.+......++.++..+... .....+.+.+.+..+. ...+...+..++.....+++|
T Consensus 168 ~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 247 (395)
T 3pey_A 168 IRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSI 247 (395)
T ss_dssp HHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEE
T ss_pred HHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEE
Confidence 45677788889999999999999999999999888877776 3456677888887774 457888888888888889999
Q ss_pred EEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 81 IFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 81 IF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
|||++++.++.+++.|++.++.+..+||++++++|..++++|++|+.++||||+++++|+
T Consensus 248 vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 307 (395)
T 3pey_A 248 IFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGI 307 (395)
T ss_dssp EECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSC
T ss_pred EEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999996
No 9
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.89 E-value=7.5e-24 Score=158.25 Aligned_cols=138 Identities=30% Similarity=0.492 Sum_probs=36.4
Q ss_pred HHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCc-cchHHHHHHHHhhCCCCcEE
Q psy13287 3 DHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQE-RQKVHCLNTLFSKLQINQSI 80 (140)
Q Consensus 3 ~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~l 80 (140)
..+.+.++.++|++++|||+++.+......++.++..+.+. .......+.+.+..+.. ..+...+..++.....+++|
T Consensus 258 ~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 337 (479)
T 3fmp_B 258 IRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAM 337 (479)
T ss_dssp HHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------------------------
T ss_pred HHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceE
Confidence 45777788899999999999999999999999998888776 34566778888877754 57888888888877788999
Q ss_pred EEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 81 IFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 81 IF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
|||++++.++.+++.|.+.++.+..+||++++.+|..++++|++|+++|||||+++++|+
T Consensus 338 vF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~Gl 397 (479)
T 3fmp_B 338 IFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGI 397 (479)
T ss_dssp ------------------------------------------------------------
T ss_pred EEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCC
Confidence 999999999999999999999999999999999999999999999999999999999996
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.88 E-value=1.2e-21 Score=140.88 Aligned_cols=135 Identities=23% Similarity=0.397 Sum_probs=119.3
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEE
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSII 81 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lI 81 (140)
+..++..++++.+++++|||+++........+++++..+... ...++.+.+..+...+|...+.+++.. ...++||
T Consensus 168 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~lv 243 (367)
T 1hv8_A 168 VEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK---INANIEQSYVEVNENERFEALCRLLKN-KEFYGLV 243 (367)
T ss_dssp HHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC---SSSSSEEEEEECCGGGHHHHHHHHHCS-TTCCEEE
T ss_pred HHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec---CCCCceEEEEEeChHHHHHHHHHHHhc-CCCcEEE
Confidence 456777788899999999999999988888888876665543 234677888888888999999998874 5678999
Q ss_pred EeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 82 FCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 82 F~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||++++.++.+++.|++.++.+..+||+++..+|..++++|++|+.++||||+++++|+
T Consensus 244 f~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 302 (367)
T 1hv8_A 244 FCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGI 302 (367)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHC
T ss_pred EECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999986
No 11
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.88 E-value=1e-21 Score=127.95 Aligned_cols=96 Identities=28% Similarity=0.480 Sum_probs=90.6
Q ss_pred cccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 45 ELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 45 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
+..++++.|+++.++.++|...|.+++...+++++||||++++.++.+++.|++.|+.+..+||++++.+|..++++|++
T Consensus 4 ~~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 4 GLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp --CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred ccCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34677899999999999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecccCCCC
Q psy13287 125 GLCRNLVCSGDSSAMM 140 (140)
Q Consensus 125 g~~~vlv~T~~~~rGl 140 (140)
|++++||||+++++|+
T Consensus 84 g~~~vlv~T~~~~~Gl 99 (163)
T 2hjv_A 84 GEYRYLVATDVAARGI 99 (163)
T ss_dssp TSCSEEEECGGGTTTC
T ss_pred CCCeEEEECChhhcCC
Confidence 9999999999999996
No 12
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.88 E-value=2.4e-21 Score=148.18 Aligned_cols=132 Identities=13% Similarity=0.081 Sum_probs=109.2
Q ss_pred CCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCc--cchHHHHHHHHhhC-CCCcEEEEeCc
Q psy13287 9 LPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQE--RQKVHCLNTLFSKL-QINQSIIFCNS 85 (140)
Q Consensus 9 ~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~--~~k~~~l~~ll~~~-~~~~~lIF~~t 85 (140)
..++.|++++|||+++.+...+..++..+....+......+++...+..... .++...+.+++... +.+++||||+|
T Consensus 197 ~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~s 276 (591)
T 2v1x_A 197 QFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFS 276 (591)
T ss_dssp HCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSS
T ss_pred hCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCc
Confidence 3457899999999999998888888875544444444556677666554432 34566777777543 56889999999
Q ss_pred hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 86 TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 86 ~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++.++.+++.|++.|+.+..+||+|++++|..++++|++|+++|||||+++++|+
T Consensus 277 r~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GI 331 (591)
T 2v1x_A 277 QKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGI 331 (591)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTC
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCC
Confidence 9999999999999999999999999999999999999999999999999999996
No 13
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.88 E-value=1.1e-21 Score=128.86 Aligned_cols=93 Identities=31% Similarity=0.408 Sum_probs=88.6
Q ss_pred CCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCc
Q psy13287 48 LKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLC 127 (140)
Q Consensus 48 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~ 127 (140)
+.++.|+++.++.++|...|.++++..+.+++||||++++.++.+++.|...|+++..+||++++.+|..++++|++|++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 56899999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecccCCCC
Q psy13287 128 RNLVCSGDSSAMM 140 (140)
Q Consensus 128 ~vlv~T~~~~rGl 140 (140)
++||||+++++|+
T Consensus 83 ~vLvaT~~~~~Gl 95 (172)
T 1t5i_A 83 RILVATNLFGRGM 95 (172)
T ss_dssp SEEEESSCCSTTC
T ss_pred cEEEECCchhcCc
Confidence 9999999999996
No 14
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.87 E-value=6.1e-22 Score=132.20 Aligned_cols=111 Identities=19% Similarity=0.172 Sum_probs=87.1
Q ss_pred HHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEe
Q psy13287 29 FMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIH 107 (140)
Q Consensus 29 ~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h 107 (140)
....++++|..+.++ ....++++.|.+..++.++|...|.+++... ++++||||++++.++.+++.|+..|+++..+|
T Consensus 7 ~~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 7 HSSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp ---------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred ccccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 345678889888886 4567789999999999999999999999875 56899999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 108 ARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 108 ~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
|++++.+|..++++|++|++++|||||++++|+
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl 118 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGL 118 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTC
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCC
Confidence 999999999999999999999999999999996
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.87 E-value=4.1e-23 Score=150.09 Aligned_cols=139 Identities=31% Similarity=0.581 Sum_probs=37.1
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCC-cccCCCeEEEEEEcCcc-chHHHHHHHHhhCCCCcE
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLME-ELTLKGVTQYYAFVQER-QKVHCLNTLFSKLQINQS 79 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~ 79 (140)
+..++..++++.|++++|||+++.+.+....++.+|..+.... ....+++.+.+..++.. .+...+.++++..+.+++
T Consensus 183 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (394)
T 1fuu_A 183 IYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQA 262 (394)
T ss_dssp HHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-------------------------------------
T ss_pred HHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcE
Confidence 4567788888999999999999999999999999988887763 44556777777776554 478888888887778899
Q ss_pred EEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 80 IIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 80 lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||||++++.++.+++.|++.++.+..+||++++.+|..++++|++|+.++||||+++++|+
T Consensus 263 lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gl 323 (394)
T 1fuu_A 263 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGI 323 (394)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.87 E-value=7.5e-21 Score=143.74 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=107.7
Q ss_pred HHHHhhCCCCCeEEEEEecCchhHHHHHHHhcc--CCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEE
Q psy13287 3 DHVISILPHERQILLYSATFPLTVKNFMEKHLK--DPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSI 80 (140)
Q Consensus 3 ~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~l 80 (140)
..+.+.++ +.|++++|||+++.+.......++ ++..+ .. ....+++...+. +...+...+.+++...+..++|
T Consensus 166 ~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~-~~~r~~l~~~v~--~~~~~~~~l~~~l~~~~~~~~I 240 (523)
T 1oyw_A 166 GQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQ-IS-SFDRPNIRYMLM--EKFKPLDQLMRYVQEQRGKSGI 240 (523)
T ss_dssp GGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-EC-CCCCTTEEEEEE--ECSSHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eC-CCCCCceEEEEE--eCCCHHHHHHHHHHhcCCCcEE
Confidence 34455554 689999999999988776665554 44333 22 233455654443 4466788888888877778999
Q ss_pred EEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 81 IFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 81 IF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
|||+|++.++.+++.|++.|+.+..+||++++++|..++++|++|+++|||||+++++|+
T Consensus 241 Vf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~Gi 300 (523)
T 1oyw_A 241 IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI 300 (523)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTT
T ss_pred EEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCC
Confidence 999999999999999999999999999999999999999999999999999999999996
No 17
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=127.99 Aligned_cols=95 Identities=23% Similarity=0.489 Sum_probs=89.8
Q ss_pred ccCCCeEEEEEEcCccc-hHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 46 LTLKGVTQYYAFVQERQ-KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 46 ~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
..++++.|+++.++..+ |...|.++++..+.+++||||++++.++.+++.|+..|+.+..+||++++.+|..++++|++
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 35678999999998765 99999999998888999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecccCCCC
Q psy13287 125 GLCRNLVCSGDSSAMM 140 (140)
Q Consensus 125 g~~~vlv~T~~~~rGl 140 (140)
|++++||||+++++|+
T Consensus 83 g~~~vLvaT~~~~~Gi 98 (175)
T 2rb4_A 83 GKEKVLITTNVCARGI 98 (175)
T ss_dssp TSCSEEEECCSCCTTT
T ss_pred CCCeEEEEecchhcCC
Confidence 9999999999999996
No 18
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.87 E-value=3.9e-21 Score=125.37 Aligned_cols=92 Identities=29% Similarity=0.598 Sum_probs=86.7
Q ss_pred CCeEEEEEEcCccc-hHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCc
Q psy13287 49 KGVTQYYAFVQERQ-KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLC 127 (140)
Q Consensus 49 ~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~ 127 (140)
+++.|+++.++.++ |.+.|.++++..+++++||||++++.++.+++.|++.++.+..+||++++.+|..++++|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 57899999998777 99999999999888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecccCCCC
Q psy13287 128 RNLVCSGDSSAMM 140 (140)
Q Consensus 128 ~vlv~T~~~~rGl 140 (140)
++||||+++++|+
T Consensus 82 ~vlv~T~~~~~G~ 94 (165)
T 1fuk_A 82 RILISTDLLARGI 94 (165)
T ss_dssp SEEEEEGGGTTTC
T ss_pred EEEEEcChhhcCC
Confidence 9999999999996
No 19
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.86 E-value=7e-21 Score=145.29 Aligned_cols=130 Identities=17% Similarity=0.222 Sum_probs=106.2
Q ss_pred CCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-----CcccCCCeEEEEEEcCcc-ch----HHHHHHHHhh-CCCCcE
Q psy13287 11 HERQILLYSATFPLTVKNFMEKHLKDPYEINLM-----EELTLKGVTQYYAFVQER-QK----VHCLNTLFSK-LQINQS 79 (140)
Q Consensus 11 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~i~~~~~~~~~~-~k----~~~l~~ll~~-~~~~~~ 79 (140)
.+.|++++|||+|+.+......++.++..+.+. .......+.+.+...+.. .+ ...+...+.. .+..++
T Consensus 212 ~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 291 (579)
T 3sqw_A 212 DNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKA 291 (579)
T ss_dssp TCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred cCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcE
Confidence 367999999999999999999999887665543 233556777777776543 22 2333333333 356799
Q ss_pred EEEeCchHHHHHHHHHHHhc---CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 80 IIFCNSTQRVELLAKKITEL---GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 80 lIF~~t~~~~~~~~~~L~~~---~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||||+|++.++.+++.|++. ++.+..+||++++.+|..++++|++|+.+|||||+++++|+
T Consensus 292 iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gi 355 (579)
T 3sqw_A 292 IIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM 355 (579)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSC
T ss_pred EEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCC
Confidence 99999999999999999987 89999999999999999999999999999999999999996
No 20
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.85 E-value=6.6e-21 Score=126.56 Aligned_cols=95 Identities=25% Similarity=0.393 Sum_probs=76.5
Q ss_pred ccCCCeEEEEEEcCccchHHHHHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 46 LTLKGVTQYYAFVQERQKVHCLNTLFSKL-QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 46 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
..++++.|.++.++.++|...|.++++.. +.+++||||++++.++.+++.|+..|+.+..+||++++.+|..++++|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 46789999999999999999999999887 46889999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecccCCCC
Q psy13287 125 GLCRNLVCSGDSSAMM 140 (140)
Q Consensus 125 g~~~vlv~T~~~~rGl 140 (140)
|++++||||+++++|+
T Consensus 95 g~~~vLvaT~~~~~Gl 110 (185)
T 2jgn_A 95 GKSPILVATAVAARGL 110 (185)
T ss_dssp TSSSEEEEEC------
T ss_pred CCCeEEEEcChhhcCC
Confidence 9999999999999996
No 21
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.85 E-value=3.5e-20 Score=140.77 Aligned_cols=130 Identities=17% Similarity=0.222 Sum_probs=105.8
Q ss_pred CCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-----CcccCCCeEEEEEEcCcc-ch----HHHHHHHHhh-CCCCcE
Q psy13287 11 HERQILLYSATFPLTVKNFMEKHLKDPYEINLM-----EELTLKGVTQYYAFVQER-QK----VHCLNTLFSK-LQINQS 79 (140)
Q Consensus 11 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~i~~~~~~~~~~-~k----~~~l~~ll~~-~~~~~~ 79 (140)
++.|++++|||+|+.+......++.++..+.+. .......+.+.+...+.. .+ ...+...+.. .+..++
T Consensus 263 ~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 342 (563)
T 3i5x_A 263 DNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKA 342 (563)
T ss_dssp TCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred cCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcE
Confidence 478999999999999999999998887665543 233556777777766543 22 2233333333 356799
Q ss_pred EEEeCchHHHHHHHHHHHhc---CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 80 IIFCNSTQRVELLAKKITEL---GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 80 lIF~~t~~~~~~~~~~L~~~---~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||||+|++.++.+++.|++. ++.+..+||++++.+|..++++|++|+++|||||+++++|+
T Consensus 343 iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gi 406 (563)
T 3i5x_A 343 IIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM 406 (563)
T ss_dssp EEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSC
T ss_pred EEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCC
Confidence 99999999999999999987 89999999999999999999999999999999999999996
No 22
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.85 E-value=8.5e-22 Score=148.41 Aligned_cols=139 Identities=32% Similarity=0.514 Sum_probs=107.4
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcC-ccchHHHHHHHHhhCCCCcE
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKLQINQS 79 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~ 79 (140)
+..+++.++.+.|++++|||+++.+......++.++..+.+. .....+.+.+.+..+. ...+...+.+++...+.+++
T Consensus 281 ~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 360 (508)
T 3fho_A 281 SMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQS 360 (508)
T ss_dssp HHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCE
T ss_pred HHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcE
Confidence 346778888899999999999999999999999988777665 3345556667777664 55688888888888788999
Q ss_pred EEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 80 IIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 80 lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||||++++.++.+++.|.+.++.+..+||++++.+|..++++|++|+.+|||||+++++|+
T Consensus 361 LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~Gi 421 (508)
T 3fho_A 361 IIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGI 421 (508)
T ss_dssp EEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----C
T ss_pred EEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.83 E-value=2.5e-19 Score=127.61 Aligned_cols=131 Identities=18% Similarity=0.293 Sum_probs=109.4
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEE
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSII 81 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lI 81 (140)
+..++...+...+++++|||+|+...+....++.++..+... ...+++.+.+..++...+. ....+.....+++||
T Consensus 150 ~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lv 225 (337)
T 2z0m_A 150 IKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC--IGLANVEHKFVHVKDDWRS--KVQALRENKDKGVIV 225 (337)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS--GGGGGEEEEEEECSSSSHH--HHHHHHTCCCSSEEE
T ss_pred HHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc--cccCCceEEEEEeChHHHH--HHHHHHhCCCCcEEE
Confidence 456778888889999999999999999999998887666432 4456677777777655443 235556667789999
Q ss_pred EeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 82 FCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 82 F~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||++++.++.+++.|+ ++..+||+++..+|..++++|++|+.++||||+++++|+
T Consensus 226 f~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 280 (337)
T 2z0m_A 226 FVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGL 280 (337)
T ss_dssp ECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTC
T ss_pred EEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCC
Confidence 9999999999999886 578999999999999999999999999999999999996
No 24
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.82 E-value=8.7e-20 Score=123.52 Aligned_cols=92 Identities=21% Similarity=0.309 Sum_probs=86.7
Q ss_pred CCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCcc
Q psy13287 49 KGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCR 128 (140)
Q Consensus 49 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~ 128 (140)
..+.+.++.++.+.|.+.|.+++...+++++||||++++.++.+++.|.+.|+.+..+||++++.+|..++++|++|+.+
T Consensus 4 i~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 4 VTYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp CCBCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred cceeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 34567788888999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCCC
Q psy13287 129 NLVCSGDSSAMM 140 (140)
Q Consensus 129 vlv~T~~~~rGl 140 (140)
+|||||++++|+
T Consensus 84 vlvaT~~~~~Gi 95 (212)
T 3eaq_A 84 VLVATDVAARGL 95 (212)
T ss_dssp EEEECTTTTCSS
T ss_pred EEEecChhhcCC
Confidence 999999999996
No 25
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.82 E-value=1.2e-19 Score=128.53 Aligned_cols=91 Identities=22% Similarity=0.322 Sum_probs=87.5
Q ss_pred CeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccE
Q psy13287 50 GVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRN 129 (140)
Q Consensus 50 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 129 (140)
.+.|+++.++..+|.+.|.+++....++++||||++++.++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.+|
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 46899999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccCCCC
Q psy13287 130 LVCSGDSSAMM 140 (140)
Q Consensus 130 lv~T~~~~rGl 140 (140)
|||||+++||+
T Consensus 82 LVaT~va~~Gi 92 (300)
T 3i32_A 82 LVATDVAARGL 92 (300)
T ss_dssp EEECSTTTCST
T ss_pred EEEechhhcCc
Confidence 99999999996
No 26
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.67 E-value=5.2e-21 Score=125.36 Aligned_cols=92 Identities=25% Similarity=0.387 Sum_probs=87.1
Q ss_pred CCeEEEEEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCc
Q psy13287 49 KGVTQYYAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLC 127 (140)
Q Consensus 49 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~ 127 (140)
+++.|++..++. ++|...|.++++..+.+++||||++++.++.+++.|+..++.+..+||++++.+|..++++|++|++
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 568889999988 8999999999988777899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecccCCCC
Q psy13287 128 RNLVCSGDSSAMM 140 (140)
Q Consensus 128 ~vlv~T~~~~rGl 140 (140)
++||||+++++|+
T Consensus 82 ~vLvaT~~~~~Gi 94 (170)
T 2yjt_D 82 NVLVATDVAARGI 94 (170)
Confidence 9999999999996
No 27
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.6e-18 Score=138.95 Aligned_cols=138 Identities=19% Similarity=0.237 Sum_probs=99.5
Q ss_pred HHHHHhhCCCCCeEEEEEecCchh--HHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCc-------------------
Q psy13287 2 LDHVISILPHERQILLYSATFPLT--VKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQE------------------- 60 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~------------------- 60 (140)
++.++..++++.|++++|||+|+. +..........+..+...... +..+.+++.....
T Consensus 311 ~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r-p~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~ 389 (1108)
T 3l9o_A 311 WEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR-PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQ 389 (1108)
T ss_dssp HHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC-SSCEEEEEEETTSSCCEEEEETTTEECHHHHH
T ss_pred HHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC-cccceEEEeecCCcceeeeeccccchhhhhHH
Confidence 467888899999999999999875 334445555555554443222 2223343322110
Q ss_pred ------------------------------------cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCce--
Q psy13287 61 ------------------------------------RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC-- 102 (140)
Q Consensus 61 ------------------------------------~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~-- 102 (140)
..+...+...+.....+++||||++++.|+.++..|...++.
T Consensus 390 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~ 469 (1108)
T 3l9o_A 390 KAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSD 469 (1108)
T ss_dssp HHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC
T ss_pred HHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCH
Confidence 112233444444446779999999999999999998654322
Q ss_pred -------------------------------------EEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 103 -------------------------------------CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 103 -------------------------------------v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++.+||+|++.+|..+++.|++|+++|||||+++++|+
T Consensus 470 ~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GI 544 (1108)
T 3l9o_A 470 DEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGL 544 (1108)
T ss_dssp ----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCC
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCC
Confidence 89999999999999999999999999999999999997
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.4e-17 Score=132.36 Aligned_cols=138 Identities=20% Similarity=0.255 Sum_probs=97.5
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHH--HHHHHhccCCcEEEcCCcccCCCeEEEEEEcC---------c----------
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVK--NFMEKHLKDPYEINLMEELTLKGVTQYYAFVQ---------E---------- 60 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~---------~---------- 60 (140)
++.++..++.+.|++++|||+|+... .......+.+..+...+.. +..+.+++.... .
T Consensus 213 ~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r-p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1010)
T 2xgj_A 213 WEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR-PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQ 291 (1010)
T ss_dssp HHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC-SSCEEEEEEETTSSCCEEEECTTCCBCHHHHH
T ss_pred HHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC-cccceEEEEecCCcceeeeeccccccchHHHH
Confidence 35677888889999999999986522 2222233445544443322 223455444311 0
Q ss_pred ------------------------------------cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCc---
Q psy13287 61 ------------------------------------RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY--- 101 (140)
Q Consensus 61 ------------------------------------~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~--- 101 (140)
......+...+...+..++||||++++.|+.+++.|...++
T Consensus 292 ~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~ 371 (1010)
T 2xgj_A 292 KAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSD 371 (1010)
T ss_dssp HHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCH
T ss_pred HHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCCh
Confidence 11122344444444567999999999999999999976433
Q ss_pred ------------------------------------eEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 102 ------------------------------------CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 102 ------------------------------------~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.++.+||++++.+|..+++.|++|+++|||||+++++|+
T Consensus 372 ~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GI 446 (1010)
T 2xgj_A 372 DEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGL 446 (1010)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGST
T ss_pred HHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccC
Confidence 289999999999999999999999999999999999996
No 29
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.75 E-value=8.7e-18 Score=136.41 Aligned_cols=134 Identities=17% Similarity=0.171 Sum_probs=101.9
Q ss_pred HHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhC-CCCcEEE
Q psy13287 3 DHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKL-QINQSII 81 (140)
Q Consensus 3 ~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lI 81 (140)
.++++.++.+.+++++|||++++........+.++..+... ......+..++..... ......++... ..++++|
T Consensus 742 ~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~-~~~r~~i~~~~~~~~~---~~i~~~il~~l~~g~qvlv 817 (1151)
T 2eyq_A 742 KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP-PARRLAVKTFVREYDS---MVVREAILREILRGGQVYY 817 (1151)
T ss_dssp HHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC-CCBCBCEEEEEEECCH---HHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC-CCCccccEEEEecCCH---HHHHHHHHHHHhcCCeEEE
Confidence 45566677789999999999988877776666554333222 2223345555443332 22333333333 4689999
Q ss_pred EeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 82 FCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 82 F~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
|||+++.++.+++.|++. +.++..+||+|++.+|..++++|++|+++|||||+++++|+
T Consensus 818 f~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~Gi 878 (1151)
T 2eyq_A 818 LYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 878 (1151)
T ss_dssp ECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGS
T ss_pred EECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeee
Confidence 999999999999999987 88999999999999999999999999999999999999996
No 30
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.74 E-value=5.6e-17 Score=130.14 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=70.5
Q ss_pred chHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCc---------------------------------------e
Q psy13287 62 QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY---------------------------------------C 102 (140)
Q Consensus 62 ~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~---------------------------------------~ 102 (140)
.+...+.+.+...+..++||||+|++.|+.+++.|...++ .
T Consensus 322 ~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 401 (997)
T 4a4z_A 322 KTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERG 401 (997)
T ss_dssp THHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcC
Confidence 3456677777777778999999999999999999977554 5
Q ss_pred EEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 103 CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 103 v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+..+||++++.+|..+++.|++|+++|||||+++++|+
T Consensus 402 i~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GI 439 (997)
T 4a4z_A 402 IAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGL 439 (997)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSC
T ss_pred eeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCC
Confidence 89999999999999999999999999999999999996
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.74 E-value=5.1e-18 Score=124.56 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=90.6
Q ss_pred CCCeEEEEEec-CchhHHH-HHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchH
Q psy13287 11 HERQILLYSAT-FPLTVKN-FMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQ 87 (140)
Q Consensus 11 ~~~q~v~~SAT-~~~~~~~-~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~ 87 (140)
.+.|++++||| .|..+.. .....+. +.+. .....+++.+.+..+ ++...+.++++. .++++||||++++
T Consensus 192 ~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~l~~-~~~~~lVF~~~~~ 263 (414)
T 3oiy_A 192 KPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---RSKEKLVELLEI-FRDGILIFAQTEE 263 (414)
T ss_dssp CCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEESS---CCHHHHHHHHHH-HCSSEEEEESSHH
T ss_pred CCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeecc---CHHHHHHHHHHH-cCCCEEEEECCHH
Confidence 77899999999 5655442 2333332 2222 334567788887665 566777788777 3589999999999
Q ss_pred HHHHHHHHHHhcCceEE-EEecCCCHHHHHHHHHHhhcCCccEEEE----ecccCCCC
Q psy13287 88 RVELLAKKITELGYCCY-YIHARMAQAHRNRVFHDFRSGLCRNLVC----SGDSSAMM 140 (140)
Q Consensus 88 ~~~~~~~~L~~~~~~v~-~~h~~~~~~~R~~~~~~f~~g~~~vlv~----T~~~~rGl 140 (140)
.++.+++.|++.|+++. .+||+ +|. +++|++|++++||| |+++++|+
T Consensus 264 ~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~Gi 315 (414)
T 3oiy_A 264 EGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGV 315 (414)
T ss_dssp HHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCC
T ss_pred HHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccC
Confidence 99999999999999998 99985 444 99999999999999 99999996
No 32
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.72 E-value=2.6e-17 Score=129.23 Aligned_cols=131 Identities=13% Similarity=0.192 Sum_probs=99.6
Q ss_pred HHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchH----HHHHHHHhhCCCCcE
Q psy13287 4 HVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKV----HCLNTLFSKLQINQS 79 (140)
Q Consensus 4 ~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~----~~l~~ll~~~~~~~~ 79 (140)
.+.... ++.|++++|||++.. ....++.++..+.+.... ..+.+++...+..+.. ..+.++....+.+++
T Consensus 233 ~l~~~~-~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr~--~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~i 306 (773)
T 2xau_A 233 QVVKRR-PDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGRT--YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDI 306 (773)
T ss_dssp HHHHHC-TTCEEEEEESCSCCH---HHHHHTTSCCEEECCCCC--CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEE
T ss_pred HHHHhC-CCceEEEEeccccHH---HHHHHhcCCCcccccCcc--cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCE
Confidence 344333 478999999999743 344566666666554322 2466666555554443 334444444468899
Q ss_pred EEEeCchHHHHHHHHHHHh-----------cCceEEEEecCCCHHHHHHHHHHhh-----cCCccEEEEecccCCCC
Q psy13287 80 IIFCNSTQRVELLAKKITE-----------LGYCCYYIHARMAQAHRNRVFHDFR-----SGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 80 lIF~~t~~~~~~~~~~L~~-----------~~~~v~~~h~~~~~~~R~~~~~~f~-----~g~~~vlv~T~~~~rGl 140 (140)
||||+++++++.+++.|++ .++.+..+||++++++|..+++.|+ +|+.+||||||++++|+
T Consensus 307 LVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~Gi 383 (773)
T 2xau_A 307 LLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSL 383 (773)
T ss_dssp EEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCc
Confidence 9999999999999999985 4788999999999999999999999 99999999999999996
No 33
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.72 E-value=1.5e-16 Score=123.99 Aligned_cols=130 Identities=22% Similarity=0.180 Sum_probs=90.1
Q ss_pred HHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEE------------EEEEcC--------ccc
Q psy13287 3 DHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ------------YYAFVQ--------ERQ 62 (140)
Q Consensus 3 ~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~------------~~~~~~--------~~~ 62 (140)
+.++..++ +.|++++|||+++. ..+. .+++.+ .+.... . +-.+.. .+.+.+ ...
T Consensus 167 ~~i~~~~~-~~~ii~lSATl~n~-~~~~-~~l~~~-~~~~~~-r-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (715)
T 2va8_A 167 ESVTIRAK-RRNLLALSATISNY-KQIA-KWLGAE-PVATNW-R-PVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDA 240 (715)
T ss_dssp HHHHHHHH-TSEEEEEESCCTTH-HHHH-HHHTCE-EEECCC-C-SSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSH
T ss_pred HHHHHhcc-cCcEEEEcCCCCCH-HHHH-HHhCCC-ccCCCC-C-CCCceEEEEecCCcccceeeecCcchhhhcccchH
Confidence 34555554 78999999999853 4443 455432 122110 0 011111 111121 133
Q ss_pred hHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcC------------------------------------ceEEEE
Q psy13287 63 KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELG------------------------------------YCCYYI 106 (140)
Q Consensus 63 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~------------------------------------~~v~~~ 106 (140)
+...+.+.+. +.+++||||++++.++.+++.|.+.. ..+.++
T Consensus 241 ~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~ 318 (715)
T 2va8_A 241 IIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYH 318 (715)
T ss_dssp HHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEE
Confidence 4455555553 46899999999999999999998642 248999
Q ss_pred ecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 107 HARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 107 h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||++++++|..+++.|++|+++|||||+++++|+
T Consensus 319 h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gi 352 (715)
T 2va8_A 319 HAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGV 352 (715)
T ss_dssp CTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSS
T ss_pred CCCCCHHHHHHHHHHHHcCCCeEEEEChHHhccc
Confidence 9999999999999999999999999999999996
No 34
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.72 E-value=9.7e-17 Score=125.20 Aligned_cols=132 Identities=18% Similarity=0.178 Sum_probs=92.3
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEE------EEcC-----ccchHHHHHHH
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYY------AFVQ-----ERQKVHCLNTL 70 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~------~~~~-----~~~k~~~l~~l 70 (140)
++.++..++++.|++++|||+++. .++ ..+++.+ .+.... .+..+...+ .+.. ...+...+.+.
T Consensus 159 ~~~ll~~l~~~~~ii~lSATl~n~-~~~-~~~l~~~-~~~~~~--rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (720)
T 2zj8_A 159 LEVILAHMLGKAQIIGLSATIGNP-EEL-AEWLNAE-LIVSDW--RPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDA 233 (720)
T ss_dssp HHHHHHHHBTTBEEEEEECCCSCH-HHH-HHHTTEE-EEECCC--CSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHH
T ss_pred HHHHHHHhhcCCeEEEEcCCcCCH-HHH-HHHhCCc-ccCCCC--CCCcceEEEEeCCeeeccccchhhhhHHHHHHHHH
Confidence 345566665689999999999863 444 3455422 121110 111111111 1112 23455666666
Q ss_pred HhhCCCCcEEEEeCchHHHHHHHHHHHhc---------------------------------CceEEEEecCCCHHHHHH
Q psy13287 71 FSKLQINQSIIFCNSTQRVELLAKKITEL---------------------------------GYCCYYIHARMAQAHRNR 117 (140)
Q Consensus 71 l~~~~~~~~lIF~~t~~~~~~~~~~L~~~---------------------------------~~~v~~~h~~~~~~~R~~ 117 (140)
+.. .+++||||++++.++.+++.|.+. ...+.++||++++++|..
T Consensus 234 ~~~--~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 311 (720)
T 2zj8_A 234 IRK--KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVL 311 (720)
T ss_dssp HHT--TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred HhC--CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHH
Confidence 543 689999999999999999999753 124999999999999999
Q ss_pred HHHHhhcCCccEEEEecccCCCC
Q psy13287 118 VFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 118 ~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+++.|++|+++|||||+++++|+
T Consensus 312 v~~~f~~g~~~vlvaT~~l~~Gv 334 (720)
T 2zj8_A 312 VEENFRKGIIKAVVATPTLSAGI 334 (720)
T ss_dssp HHHHHHTTSSCEEEECSTTGGGC
T ss_pred HHHHHHCCCCeEEEECcHhhccC
Confidence 99999999999999999999996
No 35
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.70 E-value=6.6e-17 Score=125.85 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=88.0
Q ss_pred CCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEE------EcCcc-------chHHHHHHHHhhCCC
Q psy13287 10 PHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYA------FVQER-------QKVHCLNTLFSKLQI 76 (140)
Q Consensus 10 ~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~------~~~~~-------~k~~~l~~ll~~~~~ 76 (140)
.++.|++++|||+++ ..++. .+++.+ .+.... .+-.+...+. +.... .+...+.+.+. +.
T Consensus 170 ~~~~~ii~lSATl~n-~~~~~-~~l~~~-~~~~~~--r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 242 (702)
T 2p6r_A 170 NKALRVIGLSATAPN-VTEIA-EWLDAD-YYVSDW--RPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--EN 242 (702)
T ss_dssp CTTCEEEEEECCCTT-HHHHH-HHTTCE-EEECCC--CSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TT
T ss_pred CcCceEEEECCCcCC-HHHHH-HHhCCC-cccCCC--CCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cC
Confidence 568999999999986 34444 455532 222211 1111222111 11111 14566666554 47
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc------------------------------CceEEEEecCCCHHHHHHHHHHhhcCC
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL------------------------------GYCCYYIHARMAQAHRNRVFHDFRSGL 126 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~------------------------------~~~v~~~h~~~~~~~R~~~~~~f~~g~ 126 (140)
+++||||++++.++.+++.|.+. +..+.++||++++++|..+++.|++|+
T Consensus 243 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~ 322 (702)
T 2p6r_A 243 GGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGN 322 (702)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCC
Confidence 89999999999999999998753 135889999999999999999999999
Q ss_pred ccEEEEecccCCCC
Q psy13287 127 CRNLVCSGDSSAMM 140 (140)
Q Consensus 127 ~~vlv~T~~~~rGl 140 (140)
++|||||+++++|+
T Consensus 323 ~~vlvaT~~l~~Gi 336 (702)
T 2p6r_A 323 IKVVVATPTLAAGV 336 (702)
T ss_dssp CCEEEECSTTTSSS
T ss_pred CeEEEECcHHhccC
Confidence 99999999999996
No 36
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.70 E-value=4.1e-16 Score=120.70 Aligned_cols=122 Identities=16% Similarity=0.121 Sum_probs=87.9
Q ss_pred CCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCc-ccCCCeEEEEEEcCccchHHHHHHHHh-hC-CCCcEEEEeCchH
Q psy13287 11 HERQILLYSATFPLTVKNFMEKHLKDPYEINLMEE-LTLKGVTQYYAFVQERQKVHCLNTLFS-KL-QINQSIIFCNSTQ 87 (140)
Q Consensus 11 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~-~~-~~~~~lIF~~t~~ 87 (140)
...|++++|||+++..... ........+.+. ...+. +...+...+...+...+. .. ...++||||+|++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 456 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDPL----IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKK 456 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCCE----EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCCe----EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 3689999999998654322 112112222221 12221 111223334444444343 32 4679999999999
Q ss_pred HHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 88 RVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 88 ~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.++.+++.|++.|+++..+||++++.+|..++++|++|+++||||||++++|+
T Consensus 457 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~Gl 509 (661)
T 2d7d_A 457 MSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGL 509 (661)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTC
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCc
Confidence 99999999999999999999999999999999999999999999999999996
No 37
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.70 E-value=3.7e-17 Score=132.23 Aligned_cols=125 Identities=14% Similarity=0.183 Sum_probs=97.4
Q ss_pred HHHHHhhCC-----------CCCeEEEEEec-CchhHHH-HHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHH
Q psy13287 2 LDHVISILP-----------HERQILLYSAT-FPLTVKN-FMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCL 67 (140)
Q Consensus 2 l~~il~~~~-----------~~~q~v~~SAT-~~~~~~~-~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l 67 (140)
++.+++.++ .+.|++++||| .|..+.. .....+. +.+. ......++.+.+..+ +|...|
T Consensus 229 i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~---~k~~~L 301 (1104)
T 4ddu_A 229 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---RSKEKL 301 (1104)
T ss_dssp HHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---CCHHHH
T ss_pred HHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---CHHHHH
Confidence 456666665 78999999999 5655442 2222322 3333 345677888888766 567777
Q ss_pred HHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEE-EEecCCCHHHHHHHHHHhhcCCccEEEE----ecccCCCC
Q psy13287 68 NTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCY-YIHARMAQAHRNRVFHDFRSGLCRNLVC----SGDSSAMM 140 (140)
Q Consensus 68 ~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~-~~h~~~~~~~R~~~~~~f~~g~~~vlv~----T~~~~rGl 140 (140)
.+++... ++++||||++++.++.+++.|+..|+++. .+||+ |.+ +++|++|+++|||| ||+++||+
T Consensus 302 ~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGI 372 (1104)
T 4ddu_A 302 VELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGV 372 (1104)
T ss_dssp HHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSC
T ss_pred HHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecC
Confidence 8888774 58999999999999999999999999998 99993 555 99999999999999 99999997
No 38
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.69 E-value=7.2e-16 Score=119.42 Aligned_cols=122 Identities=16% Similarity=0.084 Sum_probs=87.6
Q ss_pred CCCeEEEEEecCchhHHHHHHHhccCCcEEEcCC-cccCCCeEEEEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchH
Q psy13287 11 HERQILLYSATFPLTVKNFMEKHLKDPYEINLME-ELTLKGVTQYYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQ 87 (140)
Q Consensus 11 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~ 87 (140)
...|++++|||+++..... ........+.+ ....+.+ ...+...+...+...+... ...++||||+|++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~i----~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 450 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLDPLV----RVKPTENQILDLMEGIRERAARGERTLVTVLTVR 450 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCCCEE----EEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCCCeE----EEecccchHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 3579999999998654222 11111111111 1122211 1122334444444444332 4679999999999
Q ss_pred HHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 88 RVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 88 ~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.++.+++.|.+.|+++..+||++++.+|..++++|+.|+++|||||+++++|+
T Consensus 451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~Gl 503 (664)
T 1c4o_A 451 MAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGL 503 (664)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTC
T ss_pred HHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCc
Confidence 99999999999999999999999999999999999999999999999999996
No 39
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.69 E-value=6.9e-18 Score=129.68 Aligned_cols=116 Identities=10% Similarity=0.047 Sum_probs=84.3
Q ss_pred HHHHhhCC-CCCeEEEEEecCchhHHHHHHHhcc-CCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEE
Q psy13287 3 DHVISILP-HERQILLYSATFPLTVKNFMEKHLK-DPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSI 80 (140)
Q Consensus 3 ~~il~~~~-~~~q~v~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~l 80 (140)
..|++.++ ++.|++++|||+|+.+.. +.. ++..+.+... .+. .+...+...+.+ ..+++|
T Consensus 298 ~~i~~~l~~~~~q~il~SAT~~~~~~~----~~~~~~~~~~v~~~------------~~~-~~~~~ll~~l~~-~~~~~L 359 (618)
T 2whx_A 298 GYISTRVEMGEAAAIFMTATPPGSTDP----FPQSNSPIEDIERE------------IPE-RSWNTGFDWITD-YQGKTV 359 (618)
T ss_dssp HHHHHHHHHTSCEEEEECSSCTTCCCS----SCCCSSCEEEEECC------------CCS-SCCSSSCHHHHH-CCSCEE
T ss_pred HHHHHHhcccCccEEEEECCCchhhhh----hhccCCceeeeccc------------CCH-HHHHHHHHHHHh-CCCCEE
Confidence 34555554 579999999999977442 222 3333333211 011 111112222333 367999
Q ss_pred EEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 81 IFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 81 IF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
|||+|++.++.+++.|++.++++..+||+ +|..++++|++|+.+||||||+++||+
T Consensus 360 VF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGi 415 (618)
T 2whx_A 360 WFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGA 415 (618)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTC
T ss_pred EEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCc
Confidence 99999999999999999999999999984 788899999999999999999999996
No 40
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.69 E-value=3.5e-18 Score=126.81 Aligned_cols=109 Identities=11% Similarity=0.094 Sum_probs=71.2
Q ss_pred CCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHHHH
Q psy13287 11 HERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVE 90 (140)
Q Consensus 11 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~ 90 (140)
.+.|++++|||+++.+..+. ..+ ..+......++...+...+..+ .+ ..+++||||++++.++
T Consensus 129 ~~~~~l~~SAT~~~~~~~~~----~~~-----------~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~lVF~~s~~~a~ 191 (440)
T 1yks_A 129 NESATILMTATPPGTSDEFP----HSN-----------GEIEDVQTDIPSEPWNTGHDWI-LA-DKRPTAWFLPSIRAAN 191 (440)
T ss_dssp TSCEEEEECSSCTTCCCSSC----CCS-----------SCEEEEECCCCSSCCSSSCHHH-HH-CCSCEEEECSCHHHHH
T ss_pred CCceEEEEeCCCCchhhhhh----hcC-----------CCeeEeeeccChHHHHHHHHHH-Hh-cCCCEEEEeCCHHHHH
Confidence 57999999999987744221 111 1111111112222222222222 22 2679999999999999
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+++.|++.++++..+|| ++|..++++|++|+++||||||++++|+
T Consensus 192 ~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~Gi 237 (440)
T 1yks_A 192 VMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGA 237 (440)
T ss_dssp HHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCT
T ss_pred HHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheee
Confidence 999999999999999999 4688999999999999999999999996
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.67 E-value=1.9e-15 Score=126.34 Aligned_cols=135 Identities=16% Similarity=0.093 Sum_probs=94.3
Q ss_pred HHhhCCCCCeEEEEEecCchhHHHHHHHhccCC-cEEEcCCcccCCCeEEEEEEcCccch-------HHHHHHHHh-hCC
Q psy13287 5 VISILPHERQILLYSATFPLTVKNFMEKHLKDP-YEINLMEELTLKGVTQYYAFVQERQK-------VHCLNTLFS-KLQ 75 (140)
Q Consensus 5 il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~i~~~~~~~~~~~k-------~~~l~~ll~-~~~ 75 (140)
+...++++.|++++|||+++. .++...+-..+ ....+.+...+..+...+........ ...+...+. ..+
T Consensus 1076 i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 1154 (1724)
T 4f92_B 1076 ISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSP 1154 (1724)
T ss_dssp HHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCS
T ss_pred HHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcC
Confidence 445567789999999999854 55554432232 33344444444445555544432221 122333333 335
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----------------------------------CceEEEEecCCCHHHHHHHHHH
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL----------------------------------GYCCYYIHARMAQAHRNRVFHD 121 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~----------------------------------~~~v~~~h~~~~~~~R~~~~~~ 121 (140)
.+++||||+|++.|+.+|..|... ...++++||+|++++|..+++.
T Consensus 1155 ~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~l 1234 (1724)
T 4f92_B 1155 KKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQL 1234 (1724)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHH
T ss_pred CCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHH
Confidence 688999999999999988776421 2348999999999999999999
Q ss_pred hhcCCccEEEEecccCCCC
Q psy13287 122 FRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 122 f~~g~~~vlv~T~~~~rGl 140 (140)
|++|.++|||||+.+++|+
T Consensus 1235 F~~G~i~VLvaT~tlA~GV 1253 (1724)
T 4f92_B 1235 FSSGAIQVVVASRSLCWGM 1253 (1724)
T ss_dssp HHHTSBCEEEEEGGGSSSC
T ss_pred HHCCCCeEEEEChHHHcCC
Confidence 9999999999999999996
No 42
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.66 E-value=2.2e-17 Score=133.20 Aligned_cols=120 Identities=14% Similarity=0.200 Sum_probs=92.5
Q ss_pred CCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHH
Q psy13287 10 PHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQR 88 (140)
Q Consensus 10 ~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~ 88 (140)
+...|++++|||+++. ......++.++..+.+. .....+++.+.+. ..+|...|.++++.. ++++||||++++.
T Consensus 213 ~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~ 287 (1054)
T 1gku_B 213 VGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEE 287 (1054)
T ss_dssp EECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHH
T ss_pred ccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHH
Confidence 3568999999999988 65555555555445444 3345667888776 456777788888775 5789999999999
Q ss_pred HHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE----ecccCCCC
Q psy13287 89 VELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC----SGDSSAMM 140 (140)
Q Consensus 89 ~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~----T~~~~rGl 140 (140)
|+.+++.|++. +++..+||++. .++++|++|+++|||| ||+++||+
T Consensus 288 a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGI 337 (1054)
T 1gku_B 288 AEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGL 337 (1054)
T ss_dssp HHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCS
T ss_pred HHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEecc
Confidence 99999999988 99999999984 7899999999999999 89999997
No 43
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.66 E-value=1.9e-16 Score=117.19 Aligned_cols=110 Identities=10% Similarity=0.089 Sum_probs=78.5
Q ss_pred CCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHHH
Q psy13287 10 PHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRV 89 (140)
Q Consensus 10 ~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~ 89 (140)
+.++|++++|||+++.+..+ ... ...+.......+. .+...+..++.. ..+++||||++++.+
T Consensus 122 ~~~~~~l~~SAT~~~~~~~~----~~~-----------~~~i~~~~~~~~~-~~~~~~~~~l~~-~~~~~lVF~~~~~~~ 184 (431)
T 2v6i_A 122 MGDAGAIFMTATPPGTTEAF----PPS-----------NSPIIDEETRIPD-KAWNSGYEWITE-FDGRTVWFVHSIKQG 184 (431)
T ss_dssp TTSCEEEEEESSCTTCCCSS----CCC-----------SSCCEEEECCCCS-SCCSSCCHHHHS-CSSCEEEECSSHHHH
T ss_pred CCCCcEEEEeCCCCcchhhh----cCC-----------CCceeeccccCCH-HHHHHHHHHHHc-CCCCEEEEeCCHHHH
Confidence 45799999999999742211 110 0111111001111 111222333444 367899999999999
Q ss_pred HHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 90 ELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 90 ~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+.+++.|++.++++..+||+ +|..++++|++|+++|||||+++++|+
T Consensus 185 ~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~Gi 231 (431)
T 2v6i_A 185 AEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGA 231 (431)
T ss_dssp HHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSC
T ss_pred HHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCc
Confidence 99999999999999999997 578999999999999999999999996
No 44
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.66 E-value=1.1e-15 Score=112.93 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=70.4
Q ss_pred cchHHHHHHHHhh----CCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEec--------CCCHHHHHHHHHHhhcCCcc
Q psy13287 61 RQKVHCLNTLFSK----LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHA--------RMAQAHRNRVFHDFRSGLCR 128 (140)
Q Consensus 61 ~~k~~~l~~ll~~----~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~--------~~~~~~R~~~~~~f~~g~~~ 128 (140)
..|...+.+++.. .+..++||||++++.++.+++.|+..|+++..+|| +++..+|..++++|++|+++
T Consensus 342 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~ 421 (494)
T 1wp9_A 342 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 421 (494)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCce
Confidence 3466777777766 46789999999999999999999999999999999 99999999999999999999
Q ss_pred EEEEecccCCCC
Q psy13287 129 NLVCSGDSSAMM 140 (140)
Q Consensus 129 vlv~T~~~~rGl 140 (140)
+||||+++++|+
T Consensus 422 vLv~T~~~~~Gl 433 (494)
T 1wp9_A 422 VLVATSVGEEGL 433 (494)
T ss_dssp EEEECGGGGGGG
T ss_pred EEEECCccccCC
Confidence 999999999996
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.65 E-value=6.7e-16 Score=129.03 Aligned_cols=132 Identities=18% Similarity=0.214 Sum_probs=92.6
Q ss_pred hhCCCCCeEEEEEecCchhHHHHHHHhccC-C--cEEEcCCcccCCCeEEEEEEcCccc---hHHHH----HHHHh-hCC
Q psy13287 7 SILPHERQILLYSATFPLTVKNFMEKHLKD-P--YEINLMEELTLKGVTQYYAFVQERQ---KVHCL----NTLFS-KLQ 75 (140)
Q Consensus 7 ~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~-~--~~i~~~~~~~~~~i~~~~~~~~~~~---k~~~l----~~ll~-~~~ 75 (140)
+.++++.|+|++|||+|+. .+++ .|++. + ....+.....+-.+.+.++.+.... +...+ .+.+. ...
T Consensus 239 ~~~~~~~riI~LSATl~N~-~dvA-~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 316 (1724)
T 4f92_B 239 EMTQEDVRLIGLSATLPNY-EDVA-TFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAG 316 (1724)
T ss_dssp HHHTCCCEEEEEECSCTTH-HHHH-HHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCS
T ss_pred HhCCCCCcEEEEecccCCH-HHHH-HHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhc
Confidence 3456789999999999853 5544 45542 2 1223333334445666655544322 12222 22222 224
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc-------------------------------------CceEEEEecCCCHHHHHHH
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL-------------------------------------GYCCYYIHARMAQAHRNRV 118 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~-------------------------------------~~~v~~~h~~~~~~~R~~~ 118 (140)
.+++||||+|++.|+.+|+.|.+. ...++++||+|++++|..+
T Consensus 317 ~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~v 396 (1724)
T 4f92_B 317 KNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLV 396 (1724)
T ss_dssp SCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHH
Confidence 678999999999999999888541 2348999999999999999
Q ss_pred HHHhhcCCccEEEEecccCCCC
Q psy13287 119 FHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 119 ~~~f~~g~~~vlv~T~~~~rGl 140 (140)
++.|++|.++|||||+.+|+|+
T Consensus 397 E~~F~~G~i~vlvaTsTLa~GV 418 (1724)
T 4f92_B 397 EDLFADKHIQVLVSTATLAWGV 418 (1724)
T ss_dssp HHHHHTTCCCEEEECHHHHHHS
T ss_pred HHHHHCCCCeEEEEcchhHhhC
Confidence 9999999999999999999996
No 46
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.64 E-value=2e-16 Score=122.58 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=78.6
Q ss_pred CCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHHHH
Q psy13287 11 HERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVE 90 (140)
Q Consensus 11 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~ 90 (140)
.+.|++++|||+++.+..+ ... ...+......++...+...+.. +.+ ..+++||||++++.++
T Consensus 362 ~~~~vl~~SAT~~~~i~~~----~~~-----------~~~i~~v~~~~~~~~~~~~l~~-l~~-~~~~~lVF~~s~~~~e 424 (673)
T 2wv9_A 362 GEAAAIFMTATPPGTSDPF----PDT-----------NSPVHDVSSEIPDRAWSSGFEW-ITD-YAGKTVWFVASVKMSN 424 (673)
T ss_dssp TSCEEEEECSSCTTCCCSS----CCC-----------SSCEEEEECCCCSSCCSSCCHH-HHS-CCSCEEEECSSHHHHH
T ss_pred cCCcEEEEcCCCChhhhhh----ccc-----------CCceEEEeeecCHHHHHHHHHH-HHh-CCCCEEEEECCHHHHH
Confidence 5789999999999763321 111 0111111111121222122222 222 4789999999999999
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+++.|++.++++..+||+ +|..++++|++|+++||||||++++|+
T Consensus 425 ~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GI 470 (673)
T 2wv9_A 425 EIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGA 470 (673)
T ss_dssp HHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTC
T ss_pred HHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcce
Confidence 9999999999999999994 799999999999999999999999996
No 47
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.63 E-value=2.4e-15 Score=113.48 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=39.4
Q ss_pred cchHHHHHHHHhh----CCCCcEEEEeCchHHHHHHHHHHHhc------------CceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 61 RQKVHCLNTLFSK----LQINQSIIFCNSTQRVELLAKKITEL------------GYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 61 ~~k~~~l~~ll~~----~~~~~~lIF~~t~~~~~~~~~~L~~~------------~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
..|...|.+++.. .++.++||||+++..++.+++.|++. |.....+||++++++|..++++|++
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc
Confidence 3466667777754 35789999999999999999999875 5556677888999999999999999
Q ss_pred -CCccEEEEecccCCCC
Q psy13287 125 -GLCRNLVCSGDSSAMM 140 (140)
Q Consensus 125 -g~~~vlv~T~~~~rGl 140 (140)
|+++|||||+++++|+
T Consensus 451 ~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 451 SKDNRLLIATSVADEGI 467 (556)
T ss_dssp ---CCEEEEEC------
T ss_pred cCceEEEEEcCchhcCC
Confidence 9999999999999996
No 48
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.63 E-value=1.4e-16 Score=123.60 Aligned_cols=80 Identities=14% Similarity=0.163 Sum_probs=52.6
Q ss_pred cchHHHHHHHHhhC----CCCcEEEEeCchHHHHHHHHHHHhcC----ceEEEE--------ecCCCHHHHHHHHHHhhc
Q psy13287 61 RQKVHCLNTLFSKL----QINQSIIFCNSTQRVELLAKKITELG----YCCYYI--------HARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 61 ~~k~~~l~~ll~~~----~~~~~lIF~~t~~~~~~~~~~L~~~~----~~v~~~--------h~~~~~~~R~~~~~~f~~ 124 (140)
..|...|.+++... +..++||||++++.++.+++.|+..+ +++..+ ||++++++|..++++|++
T Consensus 379 ~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~ 458 (696)
T 2ykg_A 379 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 458 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC---------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHh
Confidence 45778888888765 56789999999999999999999987 888888 559999999999999998
Q ss_pred -CCccEEEEecccCCCC
Q psy13287 125 -GLCRNLVCSGDSSAMM 140 (140)
Q Consensus 125 -g~~~vlv~T~~~~rGl 140 (140)
|+++|||||+++++|+
T Consensus 459 ~g~~~vLVaT~v~~~Gi 475 (696)
T 2ykg_A 459 SGDHNILIATSVADEGI 475 (696)
T ss_dssp --CCSCSEEEESSCCC-
T ss_pred cCCccEEEEechhhcCC
Confidence 9999999999999996
No 49
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.63 E-value=6.3e-16 Score=119.98 Aligned_cols=65 Identities=25% Similarity=0.306 Sum_probs=57.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc------CceEEEEecC--------CCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL------GYCCYYIHAR--------MAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~------~~~v~~~h~~--------~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
..++||||++++.++.+++.|+.. |+++..+||+ |++.+|..++++|++|+++|||||+++++|+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GI 478 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGL 478 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTS
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Confidence 789999999999999999999987 8999999999 9999999999999999999999999999997
No 50
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.63 E-value=4.9e-15 Score=111.63 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=45.9
Q ss_pred chHHHHHHHHhhC----CCCcEEEEeCchHHHHHHHHHHHhcC------------ceEEEEecCCCHHHHHHHHHHhhc-
Q psy13287 62 QKVHCLNTLFSKL----QINQSIIFCNSTQRVELLAKKITELG------------YCCYYIHARMAQAHRNRVFHDFRS- 124 (140)
Q Consensus 62 ~k~~~l~~ll~~~----~~~~~lIF~~t~~~~~~~~~~L~~~~------------~~v~~~h~~~~~~~R~~~~~~f~~- 124 (140)
.|...+.+++... +..++||||++++.++.+++.|+..+ .....+||+|++++|..++++|++
T Consensus 371 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 371 PKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------------------
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 4666666666543 56899999999999999999998863 344555669999999999999999
Q ss_pred CCccEEEEecccCCCC
Q psy13287 125 GLCRNLVCSGDSSAMM 140 (140)
Q Consensus 125 g~~~vlv~T~~~~rGl 140 (140)
|+++|||||+++++|+
T Consensus 451 g~~~vLvaT~~~~~Gl 466 (555)
T 3tbk_A 451 GDNNILIATSVADEGI 466 (555)
T ss_dssp -CCSEEEECCCTTCCE
T ss_pred CCeeEEEEcchhhcCC
Confidence 9999999999999996
No 51
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.62 E-value=7.9e-16 Score=114.46 Aligned_cols=110 Identities=11% Similarity=0.051 Sum_probs=79.5
Q ss_pred CCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHHH
Q psy13287 10 PHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRV 89 (140)
Q Consensus 10 ~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~ 89 (140)
+++.|++++|||+|+.+... +..++..+.......... ...+ ..++.+ ..+++||||+|++.+
T Consensus 139 ~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p~~~---------~~~~----~~~l~~-~~~~~lVF~~s~~~a 201 (451)
T 2jlq_A 139 MGEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREIPERS---------WNTG----FDWITD-YQGKTVWFVPSIKAG 201 (451)
T ss_dssp TTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCCCSSC---------CSSS----CHHHHH-CCSCEEEECSSHHHH
T ss_pred CCCceEEEEccCCCccchhh---hcCCCceEecCccCCchh---------hHHH----HHHHHh-CCCCEEEEcCCHHHH
Confidence 45799999999998754332 233444333321100000 0111 223333 367899999999999
Q ss_pred HHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 90 ELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 90 ~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+.+++.|++.++.+..+||++. ..++++|++|+.+||||||++++|+
T Consensus 202 ~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~Gi 248 (451)
T 2jlq_A 202 NDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGA 248 (451)
T ss_dssp HHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSC
T ss_pred HHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCc
Confidence 9999999999999999999754 5799999999999999999999996
No 52
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.61 E-value=1.1e-14 Score=112.58 Aligned_cols=124 Identities=10% Similarity=0.066 Sum_probs=95.4
Q ss_pred CeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEE-EEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHH
Q psy13287 13 RQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ-YYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRV 89 (140)
Q Consensus 13 ~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~ 89 (140)
..+.++|+|+.....++.+.+ + ...+.+.+..+...+.+ ..++....+|...+.+.+... ...|+||||+|++.+
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY-~-l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~s 487 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVY-G-MEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKS 487 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHS-C-CCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHH
T ss_pred hHHeEECCCCchHHHHHHHHh-C-CeEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHH
Confidence 358899999998766665444 2 33555544433344444 345667788988888888653 467899999999999
Q ss_pred HHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 90 ELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 90 ~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
+.+++.|++.|+++..+||+..+.+|..+.++++.| .|+||||+++||+
T Consensus 488 E~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGt 536 (822)
T 3jux_A 488 ELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGT 536 (822)
T ss_dssp HHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTC
T ss_pred HHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCc
Confidence 999999999999999999997666666666777666 7999999999996
No 53
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.59 E-value=1.3e-14 Score=113.50 Aligned_cols=123 Identities=7% Similarity=0.017 Sum_probs=93.9
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEE-EEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ-YYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVE 90 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~ 90 (140)
.+..+|+|......++...+--+ .+.+........+.+ .++++...+|...|.+.+... ...++||||+|++.++
T Consensus 369 kl~GmTGTa~te~~e~~~iY~l~--vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se 446 (844)
T 1tf5_A 369 KLAGMTGTAKTEEEEFRNIYNMQ--VVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSE 446 (844)
T ss_dssp EEEEEESCCGGGHHHHHHHHCCC--EEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHH
T ss_pred hhccCCcccchhHHHHHHHhCCc--eEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHH
Confidence 46789999988766665554323 444433222222222 255667788999888887643 4678999999999999
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+++.|++.|+++..+||++.+.+|..+.++|+.| .|+||||+++||+
T Consensus 447 ~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~ 494 (844)
T 1tf5_A 447 LISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGT 494 (844)
T ss_dssp HHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTC
T ss_pred HHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCc
Confidence 99999999999999999999988888777777666 7999999999996
No 54
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.58 E-value=7.8e-16 Score=114.75 Aligned_cols=61 Identities=10% Similarity=0.107 Sum_probs=55.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+++||||++++.++.+++.|++.++.+..+||+ +|..++++|++|+.+||||||++++|+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~Gi 250 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGA 250 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---C
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCe
Confidence 6789999999999999999999999999999995 678899999999999999999999996
No 55
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.58 E-value=8.9e-16 Score=115.35 Aligned_cols=138 Identities=16% Similarity=0.077 Sum_probs=92.3
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHH-HHhccCCcEEEcCCc-------ccCCCeEEEEEEcC--------------
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFM-EKHLKDPYEINLMEE-------LTLKGVTQYYAFVQ-------------- 59 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~-~~~~~~~~~i~~~~~-------~~~~~i~~~~~~~~-------------- 59 (140)
...+++.++...+++++|||+++...... ...+..+..+..... ..+..+.......+
T Consensus 242 ~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (510)
T 2oca_A 242 ISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQE 321 (510)
T ss_dssp HHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHH
T ss_pred HHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHH
Confidence 45678888888899999999986642211 111223322222211 11111122111111
Q ss_pred -------ccchHHHHHHHHhhC---CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccE
Q psy13287 60 -------ERQKVHCLNTLFSKL---QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRN 129 (140)
Q Consensus 60 -------~~~k~~~l~~ll~~~---~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 129 (140)
...+...+.+++... ...++||||+ .+.++.+++.|.+.+.++..+||++++.+|..++++|++|+.++
T Consensus 322 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~v 400 (510)
T 2oca_A 322 EIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGII 400 (510)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCE
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCE
Confidence 112344455655544 3345566666 89999999999998889999999999999999999999999999
Q ss_pred EEEe-cccCCCC
Q psy13287 130 LVCS-GDSSAMM 140 (140)
Q Consensus 130 lv~T-~~~~rGl 140 (140)
|||| +++++|+
T Consensus 401 Lv~T~~~~~~Gi 412 (510)
T 2oca_A 401 IVASYGVFSTGI 412 (510)
T ss_dssp EEEEHHHHHHSC
T ss_pred EEEEcChhhccc
Confidence 9999 9999996
No 56
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.58 E-value=2.9e-14 Score=111.50 Aligned_cols=123 Identities=9% Similarity=0.035 Sum_probs=96.4
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEE-EEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ-YYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVE 90 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~ 90 (140)
.+..+|+|......++.+.+- ...+.+.+..+.....+ .++++...+|...|.+.+... ...++||||+|++.++
T Consensus 378 kl~GmTGTa~te~~ef~~iY~--l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se 455 (853)
T 2fsf_A 378 KLAGMTGTADTEAFEFSSIYK--LDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSE 455 (853)
T ss_dssp EEEEEECTTCCCHHHHHHHHC--CEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHH
T ss_pred hhhcCCCCchhHHHHHHHHhC--CcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 467899999877665554442 23444543333333333 345677888999999888543 4578999999999999
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+++.|++.|+++..+||++.+.+|..+.+.|+.| .|+||||+|+||+
T Consensus 456 ~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGt 503 (853)
T 2fsf_A 456 LVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGT 503 (853)
T ss_dssp HHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCS
T ss_pred HHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCc
Confidence 99999999999999999999999999999999988 7999999999996
No 57
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.57 E-value=1.6e-15 Score=116.92 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=78.2
Q ss_pred HHHHHhhCCCCCe--EEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcE
Q psy13287 2 LDHVISILPHERQ--ILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQS 79 (140)
Q Consensus 2 l~~il~~~~~~~q--~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 79 (140)
+..|++.++...| ++++|||+|+.+. ...+....+... ....+. ....... +.....+++
T Consensus 338 l~~Il~~l~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~~-~~~~i~----~~~~~~~-------l~~~~~~~v 399 (666)
T 3o8b_A 338 IGTVLDQAETAGARLVVLATATPPGSVT------VPHPNIEEVALS-NTGEIP----FYGKAIP-------IEAIRGGRH 399 (666)
T ss_dssp HHHHHHHTTTTTCSEEEEEESSCTTCCC------CCCTTEEEEECB-SCSSEE----ETTEEEC-------GGGSSSSEE
T ss_pred HHHHHHhhhhcCCceEEEECCCCCcccc------cCCcceEEEeec-ccchhH----HHHhhhh-------hhhccCCcE
Confidence 5667888887666 6777999997421 112222111100 001111 0111001 233467899
Q ss_pred EEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 80 IIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 80 lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
||||||++.++.+++.|++.++++..+||++++++ |++++.+||||||+++||+
T Consensus 400 LVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGI 453 (666)
T 3o8b_A 400 LIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGY 453 (666)
T ss_dssp EEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHC
T ss_pred EEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccC
Confidence 99999999999999999999999999999999875 5566779999999999996
No 58
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.55 E-value=4.8e-14 Score=111.20 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=40.8
Q ss_pred chHHHHHHHHhh----CCCCcEEEEeCchHHHHHHHHHHHhc------------CceEEEEecCCCHHHHHHHHHHhhc-
Q psy13287 62 QKVHCLNTLFSK----LQINQSIIFCNSTQRVELLAKKITEL------------GYCCYYIHARMAQAHRNRVFHDFRS- 124 (140)
Q Consensus 62 ~k~~~l~~ll~~----~~~~~~lIF~~t~~~~~~~~~~L~~~------------~~~v~~~h~~~~~~~R~~~~~~f~~- 124 (140)
.|+..|.++|.. .+..++||||++++.++.+++.|++. |..+..+||++++.+|..++++|++
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~ 692 (797)
T 4a2q_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (797)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------------
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhcc
Confidence 466667777754 35689999999999999999999873 5567778999999999999999999
Q ss_pred CCccEEEEecccCCCC
Q psy13287 125 GLCRNLVCSGDSSAMM 140 (140)
Q Consensus 125 g~~~vlv~T~~~~rGl 140 (140)
|++++||||+++++|+
T Consensus 693 g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 693 KDNRLLIATSVADEGI 708 (797)
T ss_dssp -CCSEEEEECC-----
T ss_pred CCceEEEEcCchhcCC
Confidence 9999999999999996
No 59
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.53 E-value=3.5e-15 Score=117.09 Aligned_cols=126 Identities=16% Similarity=0.120 Sum_probs=86.0
Q ss_pred CCCCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEEEEEcCccchHHHHHHHHh-hC-CCCcEEEEeCch
Q psy13287 10 PHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFS-KL-QINQSIIFCNST 86 (140)
Q Consensus 10 ~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~-~~-~~~~~lIF~~t~ 86 (140)
..++|++++|||+++...... .+++.....+. .......+...+ ++ ..+...+.+.+. .. ...+++|||++.
T Consensus 514 ~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~~~~--~~-~~~~~~l~~~i~~~l~~g~qvlVf~~~i 588 (780)
T 1gm5_A 514 GKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQTML--VP-MDRVNEVYEFVRQEVMRGGQAFIVYPLI 588 (780)
T ss_dssp SSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCEECC--CC-SSTHHHHHHHHHHHTTTSCCBCCBCCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceEEEE--ec-cchHHHHHHHHHHHHhcCCcEEEEecch
Confidence 356899999999987765543 33332222222 111222333322 22 233334444443 33 467899999965
Q ss_pred --------HHHHHHHHHHHh---cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 87 --------QRVELLAKKITE---LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 87 --------~~~~~~~~~L~~---~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
..++.+++.|.+ .++++..+||+|++++|..++++|++|+++|||||+++++|+
T Consensus 589 e~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GI 653 (780)
T 1gm5_A 589 EESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGI 653 (780)
T ss_dssp --------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCS
T ss_pred hhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccc
Confidence 457889999988 378999999999999999999999999999999999999996
No 60
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.52 E-value=1.8e-13 Score=107.42 Aligned_cols=123 Identities=12% Similarity=0.056 Sum_probs=95.0
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEE-EEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ-YYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVE 90 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~ 90 (140)
.+..+|+|......++.+.+ +...+.+.+........+ .++++...+|...+.+.+... ...++||||+|++.++
T Consensus 397 kL~GMTGTa~te~~Ef~~iY--~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE 474 (922)
T 1nkt_A 397 KLAGMTGTAQTEAAELHEIY--KLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSE 474 (922)
T ss_dssp EEEEEESCCGGGHHHHHHHH--CCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred hhhccccCchhHHHHHHHHh--CCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHH
Confidence 56789999987766555444 223444443332222222 345667788998888877543 4568999999999999
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+++.|++.|+++..+||++.+.+|..+.+.|+.| .|+||||+++||+
T Consensus 475 ~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGt 522 (922)
T 1nkt_A 475 YLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGT 522 (922)
T ss_dssp HHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTC
T ss_pred HHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCc
Confidence 99999999999999999999888888888899888 7999999999996
No 61
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.52 E-value=3.7e-14 Score=109.86 Aligned_cols=123 Identities=15% Similarity=0.189 Sum_probs=85.9
Q ss_pred HHHHhhCC-CCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhCCCCcEEE
Q psy13287 3 DHVISILP-HERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSII 81 (140)
Q Consensus 3 ~~il~~~~-~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lI 81 (140)
..++..++ .+.+++++|||.+ .+..+.... +....+.... ....... ... . + ..+.... ...+|
T Consensus 261 ~~~l~~l~~~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~~--r~~~l~~----~~~--~---l-~~l~~~~-~g~iI 325 (677)
T 3rc3_A 261 TRALLGLCAEEVHLCGEPAAID-LVMELMYTT-GEEVEVRDYK--RLTPISV----LDH--A---L-ESLDNLR-PGDCI 325 (677)
T ss_dssp HHHHHHCCEEEEEEEECGGGHH-HHHHHHHHH-TCCEEEEECC--CSSCEEE----CSS--C---C-CSGGGCC-TTEEE
T ss_pred HHHHHccCccceEEEeccchHH-HHHHHHHhc-CCceEEEEee--ecchHHH----HHH--H---H-HHHHhcC-CCCEE
Confidence 45666676 6789999999953 344444333 3333332211 0111110 000 0 0 1122323 34589
Q ss_pred EeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccEEEEecccCCCC
Q psy13287 82 FCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLVCSGDSSAMM 140 (140)
Q Consensus 82 F~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vlv~T~~~~rGl 140 (140)
||+|+++++.+++.|++.++.+..+||+|++++|..+++.|++ |+++||||||++++|+
T Consensus 326 f~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~Gl 386 (677)
T 3rc3_A 326 VCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGL 386 (677)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSC
T ss_pred EEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCc
Confidence 9999999999999999999999999999999999999999999 8999999999999997
No 62
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.48 E-value=1.8e-13 Score=95.73 Aligned_cols=83 Identities=8% Similarity=0.149 Sum_probs=75.9
Q ss_pred cCccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhc-CceEEEEecCCCHHHHHHHHHHhhcC-Ccc-EEEE
Q psy13287 58 VQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITEL-GYCCYYIHARMAQAHRNRVFHDFRSG-LCR-NLVC 132 (140)
Q Consensus 58 ~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~-vlv~ 132 (140)
...+.|+..|.+++... +..++||||++...++.+++.|.+. |+++..+||++++.+|..++++|++| +++ +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 45678999999999876 6789999999999999999999885 99999999999999999999999998 788 7999
Q ss_pred ecccCCCC
Q psy13287 133 SGDSSAMM 140 (140)
Q Consensus 133 T~~~~rGl 140 (140)
|+++++|+
T Consensus 172 t~~~g~Gl 179 (271)
T 1z5z_A 172 VKAGGFGI 179 (271)
T ss_dssp CCTTCCCC
T ss_pred hhhhcCCc
Confidence 99999996
No 63
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.47 E-value=8.2e-13 Score=100.99 Aligned_cols=65 Identities=11% Similarity=0.169 Sum_probs=56.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCce--------EEEEecCCCHHHHHHHHHHhhcCCcc---EEEEecccCCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYC--------CYYIHARMAQAHRNRVFHDFRSGLCR---NLVCSGDSSAMM 140 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~--------v~~~h~~~~~~~R~~~~~~f~~g~~~---vlv~T~~~~rGl 140 (140)
+.+++||||++++.|+.+++.|++.+.. +..+||+++. +|..++++|++|+.+ +||||+++++|+
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~Gi 513 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGV 513 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTC
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCc
Confidence 3579999999999999999999876442 7889999763 799999999998876 899999999996
No 64
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.47 E-value=9.9e-14 Score=111.33 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=78.2
Q ss_pred EcCccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHh-cCceEEEEecCCCHHHHHHHHHHhhcCC--ccEEEEe
Q psy13287 57 FVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITE-LGYCCYYIHARMAQAHRNRVFHDFRSGL--CRNLVCS 133 (140)
Q Consensus 57 ~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~--~~vlv~T 133 (140)
++....|...+.+++...+..++||||++++.++.+++.|+. .|+++..+||++++.+|..++++|++|+ +++||||
T Consensus 484 ~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 484 WWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp TTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred ccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 445667999999999887789999999999999999999995 5999999999999999999999999998 9999999
Q ss_pred cccCCCC
Q psy13287 134 GDSSAMM 140 (140)
Q Consensus 134 ~~~~rGl 140 (140)
+++++|+
T Consensus 564 ~v~~~Gl 570 (968)
T 3dmq_A 564 EIGSEGR 570 (968)
T ss_dssp CCTTCSS
T ss_pred chhhcCC
Confidence 9999996
No 65
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.47 E-value=1.7e-15 Score=112.89 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=69.4
Q ss_pred ccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCC
Q psy13287 60 ERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAM 139 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rG 139 (140)
...|...+.+++......++||||++++.++.+++.|. +..+||+++..+|..++++|++|++++||||+++++|
T Consensus 333 ~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~G 407 (472)
T 2fwr_A 333 SKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEG 407 (472)
T ss_dssp CSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSS
T ss_pred ChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcC
Confidence 44577888999988778899999999999999999983 6689999999999999999999999999999999999
Q ss_pred C
Q psy13287 140 M 140 (140)
Q Consensus 140 l 140 (140)
+
T Consensus 408 l 408 (472)
T 2fwr_A 408 I 408 (472)
T ss_dssp S
T ss_pred c
Confidence 6
No 66
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.43 E-value=1.9e-13 Score=109.44 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=44.2
Q ss_pred ccchHHHHHHHHhhC----CCCcEEEEeCchHHHHHHHHHHHhc------------CceEEEEecCCCHHHHHHHHHHhh
Q psy13287 60 ERQKVHCLNTLFSKL----QINQSIIFCNSTQRVELLAKKITEL------------GYCCYYIHARMAQAHRNRVFHDFR 123 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~----~~~~~lIF~~t~~~~~~~~~~L~~~------------~~~v~~~h~~~~~~~R~~~~~~f~ 123 (140)
...|+..|.++|... +..++||||++++.++.+++.|++. |.....+||+|++.+|..++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 356888888888763 4689999999999999999999986 556677799999999999999999
Q ss_pred c-CCccEEEEecccCCCC
Q psy13287 124 S-GLCRNLVCSGDSSAMM 140 (140)
Q Consensus 124 ~-g~~~vlv~T~~~~rGl 140 (140)
+ |++++||||+++++|+
T Consensus 691 ~~g~~~VLVaT~~~~eGI 708 (936)
T 4a2w_A 691 TSKDNRLLIATSVADEGI 708 (936)
T ss_dssp ---CCSEEEEECC-----
T ss_pred ccCCeeEEEEeCchhcCC
Confidence 9 9999999999999996
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.23 E-value=3.1e-11 Score=90.42 Aligned_cols=81 Identities=7% Similarity=0.132 Sum_probs=71.1
Q ss_pred ccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhc-CceEEEEecCCCHHHHHHHHHHhhcC-Ccc-EEEEec
Q psy13287 60 ERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITEL-GYCCYYIHARMAQAHRNRVFHDFRSG-LCR-NLVCSG 134 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~-vlv~T~ 134 (140)
.+.|...+.+++... ++.++||||+++..++.+++.|.+. |+++..+||++++.+|..++++|++| +.+ +|+||+
T Consensus 323 ~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~ 402 (500)
T 1z63_A 323 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 402 (500)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECC
T ss_pred cchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecc
Confidence 356888888888765 5679999999999999999999885 99999999999999999999999998 566 799999
Q ss_pred ccCCCC
Q psy13287 135 DSSAMM 140 (140)
Q Consensus 135 ~~~rGl 140 (140)
++++|+
T Consensus 403 ~~~~Gl 408 (500)
T 1z63_A 403 AGGFGI 408 (500)
T ss_dssp CC-CCC
T ss_pred cccCCC
Confidence 999996
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.14 E-value=2.6e-10 Score=88.17 Aligned_cols=80 Identities=15% Similarity=0.245 Sum_probs=71.1
Q ss_pred cchHHHHHHHHhhC---CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCcc---EEEEec
Q psy13287 61 RQKVHCLNTLFSKL---QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCR---NLVCSG 134 (140)
Q Consensus 61 ~~k~~~l~~ll~~~---~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~---vlv~T~ 134 (140)
+.|+..+..++... ...++||||+++..++.+++.|...|+.+..+||+++..+|..++++|++|+.. +|++|+
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 45677777776554 468999999999999999999999999999999999999999999999998764 899999
Q ss_pred ccCCCC
Q psy13287 135 DSSAMM 140 (140)
Q Consensus 135 ~~~rGl 140 (140)
++++|+
T Consensus 478 a~g~Gl 483 (644)
T 1z3i_X 478 AGGCGL 483 (644)
T ss_dssp GSCTTC
T ss_pred cccCCc
Confidence 999996
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.04 E-value=5.7e-10 Score=88.18 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=72.6
Q ss_pred cchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCcc---EEEEecc
Q psy13287 61 RQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCR---NLVCSGD 135 (140)
Q Consensus 61 ~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~---vlv~T~~ 135 (140)
+.|+..|.+++... ...++||||+....++.+...|...|+++..+||+++..+|..++++|++|... +|++|.+
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a 634 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA 634 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc
Confidence 45888899988776 457899999999999999999999999999999999999999999999986654 8999999
Q ss_pred cCCCC
Q psy13287 136 SSAMM 140 (140)
Q Consensus 136 ~~rGl 140 (140)
++.|+
T Consensus 635 gg~Gl 639 (800)
T 3mwy_W 635 GGLGI 639 (800)
T ss_dssp HTTTC
T ss_pred ccCCC
Confidence 99996
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.95 E-value=2.5e-09 Score=86.37 Aligned_cols=65 Identities=6% Similarity=-0.045 Sum_probs=52.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcC------------ceEE-EEecC----------C----------CH----------
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELG------------YCCY-YIHAR----------M----------AQ---------- 112 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~------------~~v~-~~h~~----------~----------~~---------- 112 (140)
..++||||+|+..|..+++.|.+.+ ++++ .+||+ + ++
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 3579999999999999999998754 4554 45542 2 22
Q ss_pred -------------------HHHHHHHHHhhcCCccEEEEecccCCCC
Q psy13287 113 -------------------AHRNRVFHDFRSGLCRNLVCSGDSSAMM 140 (140)
Q Consensus 113 -------------------~~R~~~~~~f~~g~~~vlv~T~~~~rGl 140 (140)
.+|..++++|++|++++||+||.+++|.
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGf 663 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGF 663 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSC
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCc
Confidence 1488999999999999999999999995
No 71
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.12 E-value=3e-05 Score=59.91 Aligned_cols=124 Identities=10% Similarity=0.065 Sum_probs=72.0
Q ss_pred CCCeEEEEEecCchhHHHHHHHhcc-CCcEEEcCCcccCCCeEEEEEE-cCc----cc--hHHHHHHHHhhC---CCCcE
Q psy13287 11 HERQILLYSATFPLTVKNFMEKHLK-DPYEINLMEELTLKGVTQYYAF-VQE----RQ--KVHCLNTLFSKL---QINQS 79 (140)
Q Consensus 11 ~~~q~v~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~i~~~~~~-~~~----~~--k~~~l~~ll~~~---~~~~~ 79 (140)
....+|++|||+.+ ..... ..++ +...+........++..-.+.. ++. .+ -...+.+.+.+. .++.+
T Consensus 374 ~~~~~il~SaTL~p-~~~~~-~~lGl~~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~ 451 (620)
T 4a15_A 374 KESKTIHMSGTLDP-FDFYS-DITGFEIPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNT 451 (620)
T ss_dssp GGSEEEEEESSCCS-HHHHH-HHHCCCCCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCE
T ss_pred hCCeEEEEccCCCc-HHHHH-HHhCCCceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 55679999999986 33333 3333 2333444322233333222211 110 11 122333333222 47789
Q ss_pred EEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec--ccCCCC
Q psy13287 80 IIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG--DSSAMM 140 (140)
Q Consensus 80 lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~--~~~rGl 140 (140)
+||++|.+..+.+++.++..+.+ ...+++..+|..++++|+ ++--||+++. -++.|+
T Consensus 452 lvlF~Sy~~l~~v~~~l~~~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGi 510 (620)
T 4a15_A 452 IVYFPSYSLMDRVENRVSFEHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGI 510 (620)
T ss_dssp EEEESCHHHHHHHTSSCCSCCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC----
T ss_pred EEEeCCHHHHHHHHHHHHhcchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccc
Confidence 99999999999999998732322 555566678999999999 8888999985 666664
No 72
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.96 E-value=1.1e-05 Score=54.87 Aligned_cols=43 Identities=33% Similarity=0.566 Sum_probs=39.3
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCC
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLME 44 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 44 (140)
+..|++.++++.|++++|||+|+.+.+..+.++++|..|.++.
T Consensus 197 ~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 197 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp HHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred HHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 5678899999999999999999999999999999999998864
No 73
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.89 E-value=1.4e-05 Score=53.42 Aligned_cols=44 Identities=30% Similarity=0.654 Sum_probs=38.3
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCCc
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEE 45 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~ 45 (140)
+..+++.++++.|++++|||+|+.+.+..+.++++|..+.+...
T Consensus 171 l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 171 VDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp HHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred HHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 56788888889999999999999999999999999998877643
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.87 E-value=0.00031 Score=56.24 Aligned_cols=82 Identities=12% Similarity=0.018 Sum_probs=52.9
Q ss_pred eEEEEEecCchhHHHHHHHhccCCcEEEcCCcccCCCeEE-EEEEcCccchHHHHHHHHhhC--CCCcEEEEeCchHHHH
Q psy13287 14 QILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ-YYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVE 90 (140)
Q Consensus 14 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~ 90 (140)
.+..+|.|......++.+.+--+ .+.+.+..+.....+ -.++.....|...+.+-+... ...|+||+|.|.+..|
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~l~--Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE 457 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYGMD--VVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSE 457 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHCCC--EEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHH
T ss_pred HheecCCCchHHHHHHHHHhCCC--EEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHH
Confidence 57889999987765554444323 444443332222222 223345567777766655433 4678999999999999
Q ss_pred HHHHHHH
Q psy13287 91 LLAKKIT 97 (140)
Q Consensus 91 ~~~~~L~ 97 (140)
.+++.|+
T Consensus 458 ~LS~~L~ 464 (997)
T 2ipc_A 458 RLSQMLK 464 (997)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999998
No 75
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.87 E-value=1.7e-05 Score=54.23 Aligned_cols=53 Identities=25% Similarity=0.388 Sum_probs=35.3
Q ss_pred HHHHHhh--CCC--CCeEEEEEecCchhHHHHHHHhccCCcEEEcC-CcccCCCeEEE
Q psy13287 2 LDHVISI--LPH--ERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQY 54 (140)
Q Consensus 2 l~~il~~--~~~--~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~ 54 (140)
+..|++. ++. +.|++++|||+|+.+.++.+.++.+|..+.++ .+...++++|+
T Consensus 195 ~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 195 IRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp HHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC------------
T ss_pred HHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCceec
Confidence 4566664 343 68999999999999999999999999988887 34456667665
No 76
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.63 E-value=7.9e-05 Score=49.80 Aligned_cols=43 Identities=28% Similarity=0.517 Sum_probs=36.6
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhccCCcEEEcCC
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLME 44 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 44 (140)
+..+++.++++.|++++|||+|+.+.++.+.++++|..+.+..
T Consensus 176 l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 176 IYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp HHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred HHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 5678888888999999999999999999999999998887753
No 77
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=97.63 E-value=0.00025 Score=51.70 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=55.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh---cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITE---LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~---~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++||.++++.-+..+++.+++ .++++..+||+.+..+|...++.+..|+.+|+|+|+
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp 125 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 125 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECH
Confidence 467899999999999999999998 478999999999999999999999999999999997
No 78
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.49 E-value=0.0031 Score=47.95 Aligned_cols=127 Identities=12% Similarity=0.134 Sum_probs=69.8
Q ss_pred HHhhCCCC-CeEEEEEecCchhHHHHHHHhccCC-cEE----EcC-CcccCCCeEEEEEEc--Cc--c----chHHHHHH
Q psy13287 5 VISILPHE-RQILLYSATFPLTVKNFMEKHLKDP-YEI----NLM-EELTLKGVTQYYAFV--QE--R----QKVHCLNT 69 (140)
Q Consensus 5 il~~~~~~-~q~v~~SAT~~~~~~~~~~~~~~~~-~~i----~~~-~~~~~~~i~~~~~~~--~~--~----~k~~~l~~ 69 (140)
.++.+... ..+|++|||+++ .......++-+ ... ... +.....+. ..++.. +. . .-...+.+
T Consensus 307 ~l~~~~~~~~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~-~l~v~~~~~~~~~~r~~~~~~~l~~ 383 (551)
T 3crv_A 307 YLNLLNDNELSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRVSGSY-ECYIGVDVTSKYDMRSDNMWKRYAD 383 (551)
T ss_dssp HHGGGGCTTCEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCCSCEE-EEEEECSCCCCTTTCCHHHHHHHHH
T ss_pred HHHHHhccCceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcCCCce-EEEEeCCCCCccccCCHHHHHHHHH
Confidence 34433344 789999999997 34444445532 111 111 11122222 222221 11 1 11233444
Q ss_pred HHhhC---CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEe--cccCCCC
Q psy13287 70 LFSKL---QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS--GDSSAMM 140 (140)
Q Consensus 70 ll~~~---~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T--~~~~rGl 140 (140)
.+.+. .++.++||++|.+..+.+++. .+.++..-..+++ +.+.++.|+.+.--||+|| .-++.|+
T Consensus 384 ~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGi 453 (551)
T 3crv_A 384 YLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGI 453 (551)
T ss_dssp HHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSS
T ss_pred HHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccc
Confidence 44332 578899999999999999873 3444543333445 3567788854334799998 5677775
No 79
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.41 E-value=0.00024 Score=48.14 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=35.7
Q ss_pred HHHHHhhCC-CCCeEEEEEecCchhHHHHHHHhccCCcEEEcCC
Q psy13287 2 LDHVISILP-HERQILLYSATFPLTVKNFMEKHLKDPYEINLME 44 (140)
Q Consensus 2 l~~il~~~~-~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 44 (140)
+..++..+. .+.|++++|||+|+.+.+..+.++++|..+.++.
T Consensus 199 ~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 199 LASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp HHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 345555553 5789999999999999999999999999998864
No 80
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.30 E-value=0.0008 Score=53.31 Aligned_cols=59 Identities=7% Similarity=0.061 Sum_probs=54.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..+++|.++|+.-++.+++.+++. ++++..+||+++..+|...++++.+|+.+|+|+|.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 479 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTH 479 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECT
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 578999999999999988888754 78999999999999999999999999999999997
No 81
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.22 E-value=0.0012 Score=54.15 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=55.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh---cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITE---LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~---~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++||.++++.-|..+++.+++ .++++..+||+.+..+|...++.+++|+.+|+|+|+
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp 182 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 182 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEH
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECH
Confidence 467899999999999999999998 467999999999999999999999999999999997
No 82
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.22 E-value=0.00045 Score=52.46 Aligned_cols=60 Identities=10% Similarity=0.134 Sum_probs=41.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE--EecccCCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV--CSGDSSAMM 140 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv--~T~~~~rGl 140 (140)
.++.+|||++|.+.++.+++.+.. .. ...+|.. .+|..++++|+.|. .+|+ ||+.+++|+
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGi 444 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGV 444 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC--------
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecce
Confidence 577899999999999999998865 23 3556653 56889999999864 5776 889999996
No 83
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.11 E-value=0.002 Score=48.73 Aligned_cols=59 Identities=10% Similarity=0.140 Sum_probs=56.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+.+||.++++.-++...+.|+..|+.+..+||+.+..++..+++.+..|..+++++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 57899999999999999999999999999999999999999999999999999999997
No 84
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.05 E-value=0.0019 Score=49.62 Aligned_cols=60 Identities=12% Similarity=0.197 Sum_probs=55.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHh--hcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDF--RSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f--~~g~~~vlv~T~ 134 (140)
..+++||.++++.-++...+.|++.|+++..++|+.+..++..+++.+ ..+..+++++|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 367899999999999999999999999999999999999999999988 578999999998
No 85
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.73 E-value=0.0095 Score=39.44 Aligned_cols=55 Identities=5% Similarity=0.111 Sum_probs=45.2
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc-----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~-----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++||.|++++-++.+++.+++. +.++..++|+.+...+. +.+..+..+++|+|.
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~ 142 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTP 142 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCH
Confidence 47999999999999999888775 67899999998876554 344557789999996
No 86
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.65 E-value=0.0089 Score=40.01 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=44.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc-----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~-----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++||.|++++-++.+++.+++. ++++..++|+.+..++...+ .+.+|+|+|.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp 150 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSP 150 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECH
Confidence 3468999999999999999988775 67899999998876654433 3579999997
No 87
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.63 E-value=0.019 Score=39.00 Aligned_cols=56 Identities=7% Similarity=0.081 Sum_probs=44.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++||.++++.-+..+++.+++. ++++..++|+.+...+...+ .+..+|+|+|+
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp 169 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATP 169 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECH
Confidence 3457999999999999999888765 78899999998876544333 25689999996
No 88
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.33 E-value=0.03 Score=46.35 Aligned_cols=60 Identities=8% Similarity=0.054 Sum_probs=54.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...+++|.|+|+.-++.+++.+++. ++++..++|..+..++...++.+..|+.+|+|+|.
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~ 714 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 714 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 4578999999999999999888753 67899999999999999999999999999999996
No 89
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.31 E-value=0.021 Score=38.40 Aligned_cols=55 Identities=5% Similarity=0.001 Sum_probs=44.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++||.+++++-++.+++.+++. ++.+..++|+.+...+...+. . ..+|+|+|+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp 160 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATP 160 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECH
Confidence 457999999999999988877664 789999999998876655443 2 479999996
No 90
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.08 E-value=0.031 Score=39.96 Aligned_cols=56 Identities=5% Similarity=0.097 Sum_probs=45.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc-----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~-----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++||.|+++.-++.+++.+++. +.++..++|+.+...+.. .+..+..+|+|+|.
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~ 136 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTP 136 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECH
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECH
Confidence 458999999999999999988775 788999999988765543 34557789999996
No 91
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.05 E-value=0.034 Score=36.24 Aligned_cols=55 Identities=4% Similarity=-0.011 Sum_probs=42.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc-----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~-----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++||.++++.-++.+++.+++. +..+..++|+.+....... + .+..+|+|+|.
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~ 130 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATP 130 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCH
Confidence 457999999999999998888764 5689999999886543322 2 35679999997
No 92
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.94 E-value=0.023 Score=37.97 Aligned_cols=55 Identities=11% Similarity=0.087 Sum_probs=41.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+..++||.++++.-+..+++.+++. ++.+..++|+.+.......+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 3567999999999999999998875 47899999998765443332 4679999996
No 93
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.75 E-value=0.048 Score=35.46 Aligned_cols=55 Identities=5% Similarity=0.065 Sum_probs=43.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++||.|+++.-++.+++.+++. +.++..++|+.+...+...+. +..+++|+|+
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~ 128 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATP 128 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECH
Confidence 467999999999999999999887 468899999987655433332 2578999996
No 94
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.72 E-value=0.031 Score=37.55 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=37.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++||.+++++-+..+++.+++. +..+..++|+.+... ..+.+..+..+++|+|+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp 157 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTP 157 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECH
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECH
Confidence 3468999999999999999998765 567888888865433 34456667789999995
No 95
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=95.70 E-value=0.027 Score=46.18 Aligned_cols=58 Identities=14% Similarity=0.281 Sum_probs=50.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----Cc----eEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GY----CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~----~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++||.++|+.-+..+++.+++. ++ ++..+||+.+..++....+.+++ .+|+|+|+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP 163 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTT 163 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEH
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcH
Confidence 4578999999999999999888754 56 89999999999998888888877 89999997
No 96
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.70 E-value=0.017 Score=38.27 Aligned_cols=70 Identities=9% Similarity=0.038 Sum_probs=43.2
Q ss_pred ccchHHH-HHHHHhhC----CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEE
Q psy13287 60 ERQKVHC-LNTLFSKL----QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNL 130 (140)
Q Consensus 60 ~~~k~~~-l~~ll~~~----~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vl 130 (140)
+.-|-.. +..++... ...++||.++++.-++.+++.+++. +.++..++|+.+..++... +. +.+|+
T Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~ii 135 (224)
T 1qde_A 61 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIV 135 (224)
T ss_dssp TSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEE
T ss_pred CCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEE
Confidence 4445433 44444433 3458999999999999999888764 6789999999776544332 22 37899
Q ss_pred EEec
Q psy13287 131 VCSG 134 (140)
Q Consensus 131 v~T~ 134 (140)
|+|.
T Consensus 136 v~Tp 139 (224)
T 1qde_A 136 VGTP 139 (224)
T ss_dssp EECH
T ss_pred EECH
Confidence 9996
No 97
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.67 E-value=0.028 Score=42.01 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=43.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+++||.|+++.-+..+++.+++. ++++..++|+.+...+...+. +..+|+|+|.
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 110 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTP 110 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECH
Confidence 678999999999999988888775 889999999987665432222 2368999996
No 98
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=95.56 E-value=0.027 Score=33.28 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=36.9
Q ss_pred HHHHHHhhCC-CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCC
Q psy13287 66 CLNTLFSKLQ-INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 111 (140)
Q Consensus 66 ~l~~ll~~~~-~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~ 111 (140)
.+.+.+..++ ..++++||.+-..+...+..|++.|+++..+.|++.
T Consensus 44 ~l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 44 ELREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3444555554 467999999999999999999999999999999843
No 99
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.51 E-value=0.036 Score=36.79 Aligned_cols=56 Identities=4% Similarity=-0.019 Sum_probs=39.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc---CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL---GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~---~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++||.+++++-++.+++.+++. +..+..++|+.+...+... +. +..+|+|+|+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp 151 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATP 151 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECH
Confidence 3567999999999999999999875 6788999998776544333 23 3489999996
No 100
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=95.41 E-value=0.057 Score=36.46 Aligned_cols=54 Identities=9% Similarity=0.088 Sum_probs=42.2
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++||.|++++-+..+++.+++. +..+..++|+.+.......+ .+..+|+|+|.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp 158 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATP 158 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECH
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECH
Confidence 57999999999999999888765 56788999998765543322 24679999997
No 101
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=95.38 E-value=0.063 Score=42.56 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=40.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+++||.|+++.-+..+++.+++. ++++..+||+.+...+...+. +..+|+|||.
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp 354 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTP 354 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEch
Confidence 678999999999999988888775 889999999987665433222 3578999996
No 102
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.36 E-value=0.066 Score=38.20 Aligned_cols=55 Identities=7% Similarity=0.013 Sum_probs=44.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++||.|+++.-++.+++.+++. +.++..++|+.+..++...+. ..+++|+|.
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~ 146 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTP 146 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECH
Confidence 3568999999999999998888764 678999999998776555444 358999985
No 103
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=95.36 E-value=0.045 Score=41.01 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=39.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+++||.|+++.-+..+++.+++. ++++..+||+.+...+...+. +..+|+|||.
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 113 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTP 113 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECH
Confidence 678999999999999998888775 889999999987665432222 2368999996
No 104
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=95.24 E-value=0.037 Score=32.07 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=31.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARM 110 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~ 110 (140)
..++++||.+-..+...+..|+..|+++..+.|++
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 46789999999999999999999999999999984
No 105
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=95.20 E-value=0.12 Score=37.55 Aligned_cols=55 Identities=9% Similarity=0.123 Sum_probs=45.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc-Cc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL-GY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~-~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+..++||.|+++.-++.+++.+++. +. ++..+||+.+..++..... ..+|+|+|.
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~ 109 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATP 109 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecH
Confidence 5778999999999999999999876 65 8999999999887665543 358999986
No 106
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.13 E-value=0.023 Score=37.60 Aligned_cols=55 Identities=4% Similarity=-0.028 Sum_probs=40.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc--------CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL--------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~--------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++||.+++++-++.+++.+++. +..+..++|+.+..... +.+ .+..+|+|+|.
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp 134 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTP 134 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCH
Confidence 467999999999999998888664 57888999987654321 112 24678999996
No 107
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=95.07 E-value=0.2 Score=36.04 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=42.7
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++||.+++++-+..+++.+++. ++++..++|+.+..+.... +. ...+|+|+|+
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~~I~v~Tp 159 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD---LE-RGCHLLVATP 159 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH---HT-TCCSEEEECH
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH---hh-CCCCEEEECh
Confidence 56999999999999999988764 6789999999887654332 32 3579999997
No 108
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=95.03 E-value=0.14 Score=41.06 Aligned_cols=57 Identities=9% Similarity=-0.016 Sum_probs=45.7
Q ss_pred hhCCCCcEEEEeCchHHHHHHHHHHHh----cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 72 SKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 72 ~~~~~~~~lIF~~t~~~~~~~~~~L~~----~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
......+++|-|+|+.-|...++++.. .|+++..+.|+++.+.|.... .++|+|+|+
T Consensus 111 ~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 111 NALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp HHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 444567899999999999888877755 389999999999987665443 379999997
No 109
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=94.92 E-value=0.18 Score=40.42 Aligned_cols=57 Identities=9% Similarity=0.050 Sum_probs=46.4
Q ss_pred hhCCCCcEEEEeCchHHHHHHHHHHHh----cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 72 SKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 72 ~~~~~~~~lIF~~t~~~~~~~~~~L~~----~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..+...+++|.|+|+.-|...++++.. .|+++.++.|+++.++|.... ..+|+++|+
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 455567899999999999988887755 489999999999988766543 279999997
No 110
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=94.92 E-value=0.1 Score=38.33 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=43.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++||.++|++-+..+++.+++. ++++..++|+.+...+...+ ....+|+|+|+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp 187 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATP 187 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECH
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEECh
Confidence 457999999999999999988775 56789999999876544333 24589999996
No 111
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.77 E-value=0.14 Score=34.86 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=43.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++||.++++.-++.+++.+++. +..+..++|+.+....... +..| .+|+|+|+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp 184 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATP 184 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcH
Confidence 567999999999999999988774 5678999999876654433 3334 89999995
No 112
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.70 E-value=0.2 Score=35.19 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=43.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+..++||.|+++.-++.+++.+++. +..+..++|+.+.......+. ..+++|+|.
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~ 131 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTP 131 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECH
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecH
Confidence 4568999999999999999998874 678999999987665443332 468999996
No 113
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=94.68 E-value=0.027 Score=32.86 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=31.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARM 110 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~ 110 (140)
..++++||.+-..+...+..|+..|+++..+.|++
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 46789999998899999999999999999999983
No 114
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=94.67 E-value=0.11 Score=37.03 Aligned_cols=76 Identities=13% Similarity=0.157 Sum_probs=54.4
Q ss_pred cCccchHHHHHHHHhhCC--CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecc
Q psy13287 58 VQERQKVHCLNTLFSKLQ--INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 58 ~~~~~k~~~l~~ll~~~~--~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
++.+.|+..|.++|.... +.+++||++..+..+-+..+++..+++..-+-|....++ ++ -.+....+.+.|..
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsa 179 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSE 179 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESS
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECC
Confidence 346779999999998773 568999999999999999999999999999999855432 21 12455566555654
Q ss_pred cCC
Q psy13287 136 SSA 138 (140)
Q Consensus 136 ~~r 138 (140)
++-
T Consensus 180 g~~ 182 (328)
T 3hgt_A 180 GIN 182 (328)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 115
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=94.61 E-value=0.37 Score=28.64 Aligned_cols=47 Identities=11% Similarity=0.277 Sum_probs=32.7
Q ss_pred EEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCC
Q psy13287 80 IIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGL 126 (140)
Q Consensus 80 lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~ 126 (140)
++|....+-..++...++..|.++..++++.+...|.+.++.|....
T Consensus 6 vvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqg 52 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQG 52 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTT
T ss_pred EEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcC
Confidence 45666666666777777777777777777777777777777775443
No 116
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=94.60 E-value=0.057 Score=31.69 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=32.7
Q ss_pred HhhCC-CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCC
Q psy13287 71 FSKLQ-INQSIIFCNSTQRVELLAKKITELGYCCYYIHARM 110 (140)
Q Consensus 71 l~~~~-~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~ 110 (140)
+..++ ..++++||.+-..+...+..|++.|+++..+.|++
T Consensus 50 ~~~l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 50 LNSFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp GGGCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hhhhcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 34443 46788999998889999999999999988888883
No 117
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=94.59 E-value=0.053 Score=32.85 Aligned_cols=35 Identities=17% Similarity=0.441 Sum_probs=30.9
Q ss_pred CcEEEEe-CchHHHHHHHHHHHhcCceEEEEecCCC
Q psy13287 77 NQSIIFC-NSTQRVELLAKKITELGYCCYYIHARMA 111 (140)
Q Consensus 77 ~~~lIF~-~t~~~~~~~~~~L~~~~~~v~~~h~~~~ 111 (140)
.++++|| .+-..+...+..|+..|+++..+.|++.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 6789999 5888888999999999999999999854
No 118
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=94.56 E-value=0.038 Score=31.64 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=31.3
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCC
Q psy13287 77 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 111 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~ 111 (140)
.++++||.+-..+...+..|++.|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 77899999998999999999999999888889864
No 119
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=94.53 E-value=0.23 Score=40.11 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=46.7
Q ss_pred HhhCCCCcEEEEeCchHHHHHHHHHHHh----cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 71 FSKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 71 l~~~~~~~~lIF~~t~~~~~~~~~~L~~----~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+..+...+++|-|+|+.-|...++++.. .|+++.++.|+++.++|.... .++|+++|+
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 4555567899999999998888777754 489999999999988776554 269999997
No 120
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=94.53 E-value=0.18 Score=40.85 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=47.7
Q ss_pred HHhhCCCCcEEEEeCchHHHHHHHHHHHh----cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 70 LFSKLQINQSIIFCNSTQRVELLAKKITE----LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 70 ll~~~~~~~~lIF~~t~~~~~~~~~~L~~----~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
++..+...+++|.++|+.-|...++++.. .|++|..+.|+++.++|.... .++|+++|+
T Consensus 114 ~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 114 ALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 34555667899999999988888777755 489999999999988777664 379999997
No 121
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=94.47 E-value=0.14 Score=28.49 Aligned_cols=36 Identities=14% Similarity=0.372 Sum_probs=29.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
+..++++||.+-..+...+..|++.|+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 3567899999988999999999999985 6666 8754
No 122
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.38 E-value=0.19 Score=36.06 Aligned_cols=57 Identities=11% Similarity=0.173 Sum_probs=45.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++||.++++.-+..+++.+++. +..+..++|+.+...+ .+.+..+..+|+|+|+
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~ 167 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTP 167 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECH
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECH
Confidence 4568999999999999999888765 5678888888765433 4556668889999996
No 123
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=94.29 E-value=0.054 Score=32.73 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=35.3
Q ss_pred HHHHHHhhCC-CCcEEEEeCchHH--HHHHHHHHHhcCceEEEEecCC
Q psy13287 66 CLNTLFSKLQ-INQSIIFCNSTQR--VELLAKKITELGYCCYYIHARM 110 (140)
Q Consensus 66 ~l~~ll~~~~-~~~~lIF~~t~~~--~~~~~~~L~~~~~~v~~~h~~~ 110 (140)
.+...+..++ ..++++||.+-.. +...+..|+..|+++..+.|++
T Consensus 60 ~l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~ 107 (124)
T 3flh_A 60 DLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGAL 107 (124)
T ss_dssp HHHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHH
T ss_pred HHHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcH
Confidence 3445555554 4578899998776 8899999999999999999984
No 124
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=94.20 E-value=0.14 Score=39.67 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=42.0
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+++||.++++.-+..+++.+++. ++++..++|+.+...+...+. ...+|+|||+
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp 119 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTP 119 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECH
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECH
Confidence 78999999999999999888775 789999999986543322221 2479999997
No 125
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=93.91 E-value=0.083 Score=36.93 Aligned_cols=68 Identities=9% Similarity=0.017 Sum_probs=46.0
Q ss_pred ccchH-HHHHHHHhhC----CCCcEEEEeCchHHHHHHHHHHHhc-----CceEEEEecCCCHHHHHHHHHHhhcCCccE
Q psy13287 60 ERQKV-HCLNTLFSKL----QINQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRN 129 (140)
Q Consensus 60 ~~~k~-~~l~~ll~~~----~~~~~lIF~~t~~~~~~~~~~L~~~-----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 129 (140)
+.-|- ..+..++... ...++||.++|++-|..+++.++.. +..+..++|+.+...+. ....+|
T Consensus 141 GsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~I 213 (300)
T 3fmo_B 141 GTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQI 213 (300)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSE
T ss_pred CCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCE
Confidence 34453 3344455444 2347999999999999988888764 46788888876543221 456789
Q ss_pred EEEec
Q psy13287 130 LVCSG 134 (140)
Q Consensus 130 lv~T~ 134 (140)
+|||+
T Consensus 214 lV~TP 218 (300)
T 3fmo_B 214 VIGTP 218 (300)
T ss_dssp EEECH
T ss_pred EEECH
Confidence 99997
No 126
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=93.89 E-value=0.19 Score=34.94 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=43.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++||.++++.-++.+++.+++. +..+..++|+.+...+... +. ..+++|+|.
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~ 113 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATP 113 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECH
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECH
Confidence 678999999999999999999864 5789999999887654333 32 378999996
No 127
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.81 E-value=0.28 Score=35.11 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=43.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++||.|+++.-++.+++.+++. ++++..++|+.+....... ..+..+++|+|.
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~ 147 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTP 147 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECH
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEch
Confidence 3457999999999999998888765 6789999999876543222 236789999995
No 128
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=93.77 E-value=0.098 Score=30.64 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=35.1
Q ss_pred HHHHHhhCC-CCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 67 LNTLFSKLQ-INQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 67 l~~ll~~~~-~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
+...+..++ ..++++||.+-..+...+..|+..|+. +..+.|++.
T Consensus 48 l~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 48 LGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 334444443 467899999988999999999999994 889999854
No 129
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.48 E-value=0.37 Score=34.64 Aligned_cols=56 Identities=11% Similarity=0.047 Sum_probs=43.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++||.++++.-+..+++.+++. ++.+..++|+.+..+....+. ...+++|+|.
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp 163 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTP 163 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCH
Confidence 4578999999999999999988765 568899999988766544333 2468999996
No 130
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=93.45 E-value=0.065 Score=31.39 Aligned_cols=35 Identities=3% Similarity=0.135 Sum_probs=30.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYC-CYYIHARM 110 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~ 110 (140)
..++++||.+-..+...+..|+..|+. +..+.|++
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 467899999998999999999999994 88899984
No 131
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=93.36 E-value=0.11 Score=42.06 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=39.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+++||.++++.-+..+++.+++. ++++..+||+.+...+...+. +..+|+|+|+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp 354 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTP 354 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecH
Confidence 678999999999999998888775 889999999986654322221 2368999996
No 132
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=93.35 E-value=0.082 Score=32.90 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=31.2
Q ss_pred CCcEEEEeCch--HHHHHHHHHHHhcCceEEEEecCCC
Q psy13287 76 INQSIIFCNST--QRVELLAKKITELGYCCYYIHARMA 111 (140)
Q Consensus 76 ~~~~lIF~~t~--~~~~~~~~~L~~~~~~v~~~h~~~~ 111 (140)
..++++||.+- ..+...+..|+..|+++..+.|++.
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 46788999987 6889999999999999999999943
No 133
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.33 E-value=0.5 Score=31.73 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=39.4
Q ss_pred ccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 60 ERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
+.-|-.....++... ..+++|+|+++.-++.+.+.+.+.+.. +..++|+..
T Consensus 118 G~GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 118 GSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (237)
T ss_dssp STTHHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB
T ss_pred CCCHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 445655544444443 678999999999999999999888888 999998754
No 134
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=93.10 E-value=0.19 Score=30.92 Aligned_cols=36 Identities=25% Similarity=0.562 Sum_probs=31.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARM 110 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~ 110 (140)
+..+++|||.+-..+...+..|+..|+ +|..+.|++
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 356799999998889999999999999 599999994
No 135
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=92.95 E-value=0.15 Score=30.02 Aligned_cols=37 Identities=27% Similarity=0.540 Sum_probs=31.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~ 111 (140)
+..++++||.+-..+...+..|+..|+....+.|++.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 4567999999999999999999999985588889954
No 136
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=92.93 E-value=0.12 Score=32.18 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=31.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~~ 111 (140)
+..+++|||.+-..+...+..|+..|+ +|..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 356799999998888899999999999 5999999974
No 137
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=92.90 E-value=0.03 Score=43.46 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=40.2
Q ss_pred CcEEEEeCchHHHHHH-HHHHHhcC---ceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELL-AKKITELG---YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~-~~~L~~~~---~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+++||.++++.-+..+ ++.|++.. +++..+||+.+..++...+. +..+|+|+|.
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp 114 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 114 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEH
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECH
Confidence 7899999999999999 88888763 89999999987665433332 5689999996
No 138
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=92.90 E-value=0.09 Score=31.95 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=35.1
Q ss_pred HHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 67 LNTLFSKL-QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 67 l~~ll~~~-~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
+.++.... +..++++||.+-..+...+..|+..|+. +..+.|++.
T Consensus 72 ~~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 72 LEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp HHHHTTTCCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred HHHHHhhCCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 33444444 3567999999988999999999999985 999999953
No 139
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=92.90 E-value=0.12 Score=33.65 Aligned_cols=55 Identities=13% Similarity=0.130 Sum_probs=36.3
Q ss_pred CCcEEEEeCchHHHHH-HHHHHHhc---CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVEL-LAKKITEL---GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~-~~~~L~~~---~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++||.|+++.-++. +.+.++.. ++++..++|+.+...+...+. +..+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5789999999998887 66666554 678999999865443222211 2468888886
No 140
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=92.58 E-value=0.38 Score=35.45 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 60 ERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+.-|-......+... ..++||.|+++.-+..+++.+++.+.+ +..+||+.+. ..+|+|+|.
T Consensus 118 GsGKT~~~l~~i~~~-~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~ 179 (472)
T 2fwr_A 118 GSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (472)
T ss_dssp TSCHHHHHHHHHHHH-CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEH
T ss_pred CCCHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEc
Confidence 334544443334333 678999999999999999999999998 9999998753 357888875
No 141
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=92.47 E-value=0.78 Score=31.72 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 85 STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 85 t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
+..+++.+.+.|+..|+.| ..+.+++.++=...+++|..
T Consensus 47 t~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 47 THLDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHH
Confidence 4578999999999999998 46678999998899999965
No 142
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=92.33 E-value=0.1 Score=31.95 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=31.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARM 110 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~ 110 (140)
+..++++||.+-..+...+..|+..|+. |..+.|++
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 121 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGF 121 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCH
Confidence 3567899999988899999999999995 99999984
No 143
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=91.91 E-value=1.1 Score=28.92 Aligned_cols=47 Identities=15% Similarity=0.373 Sum_probs=39.0
Q ss_pred CcEEEEeCc-----------hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 77 NQSIIFCNS-----------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 77 ~~~lIF~~t-----------~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
+.+||+.|. ..+++.+++.|+.+|+.|. .+.+++.++=...+++|..
T Consensus 44 g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 44 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 457888875 4889999999999999985 5677899998888999854
No 144
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=91.73 E-value=0.055 Score=36.31 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=40.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++||.+++++-+..+++.+++. ++.+..++|+..... .......+..+|+|+|+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp 157 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTP 157 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECH
Confidence 347999999999999999988775 667877777633221 12223356789999995
No 145
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=91.54 E-value=0.13 Score=31.47 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=31.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
..++++||.+-..+...+..|++.|+. +..+.|++.
T Consensus 91 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 91 AKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 467899999999999999999999995 888999843
No 146
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=91.48 E-value=0.16 Score=31.45 Aligned_cols=35 Identities=3% Similarity=0.135 Sum_probs=30.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYC-CYYIHARM 110 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~ 110 (140)
..++++||.+-..+...+..|+..|+. +..+.|++
T Consensus 56 ~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 56 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 467899999988999999999999985 88888883
No 147
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=91.31 E-value=0.16 Score=30.96 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=32.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCCCH
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMAQ 112 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~~~ 112 (140)
..++++||.+-..+...+..|++.|+ +|..+.|++..
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~~ 111 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEG 111 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTTS
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCccC
Confidence 46799999998888899999999999 59999999843
No 148
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=91.12 E-value=0.28 Score=33.89 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=37.5
Q ss_pred HHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCCC
Q psy13287 65 HCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 111 (140)
Q Consensus 65 ~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~~ 111 (140)
..+...+...+..++++||.+-..++..+..|+..|+ +|..+.|++.
T Consensus 170 ~~l~~~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 170 DYVQRNLIDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp HHHHHHTGGGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHhhhhCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 3444444444567899999999999999999999998 6999999965
No 149
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=90.99 E-value=1.4 Score=30.99 Aligned_cols=47 Identities=15% Similarity=0.373 Sum_probs=40.6
Q ss_pred CcEEEEeCc-----------hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 77 NQSIIFCNS-----------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 77 ~~~lIF~~t-----------~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
+-+|||+|. ..+++.+++.|+..|+.|. .+.+++.++=...+++|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 348999998 6789999999999999985 6668999999999999964
No 150
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=90.78 E-value=4.8 Score=31.36 Aligned_cols=82 Identities=12% Similarity=0.055 Sum_probs=59.5
Q ss_pred EEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc--CceEEEEe--------------------cCC
Q psy13287 53 QYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL--GYCCYYIH--------------------ARM 110 (140)
Q Consensus 53 ~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h--------------------~~~ 110 (140)
+...-+.++.|.-.+..++... +.++||.+++...|..+++.|+.. +-.|.++- ...
T Consensus 31 ~~l~g~tgs~kt~~~a~~~~~~-~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~ 109 (664)
T 1c4o_A 31 VTLLGATGTGKTVTMAKVIEAL-GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDA 109 (664)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH-TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCC
T ss_pred EEEEcCCCcHHHHHHHHHHHHh-CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhc
Confidence 3445567788988888887664 567999999999999999999876 23455443 222
Q ss_pred --C---HHHHHHHHHHhhcCCccEEEEecc
Q psy13287 111 --A---QAHRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 111 --~---~~~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
+ ...|..++.++..++-.|+|+|--
T Consensus 110 ~~~~~i~~~R~~~l~~L~~~~~~ivV~s~~ 139 (664)
T 1c4o_A 110 SINPEIERLRHSTTRSLLTRRDVIVVASVS 139 (664)
T ss_dssp SCCHHHHHHHHHHHHHHHHCSCEEEEEEGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCCeEEEecHH
Confidence 2 447999999998776556666653
No 151
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=90.70 E-value=0.81 Score=34.80 Aligned_cols=55 Identities=5% Similarity=0.144 Sum_probs=42.5
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc--------CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL--------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~--------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++||.++++.-+..+++.+++. ...+..++|+.+.. ..++.+..+..+|+|||+
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~l~~~~~~IlV~Tp 158 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFR---AAMNKMNKLRPNIVIATP 158 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHH---HHHHHHHHHCCSEEEECH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHH---HHHHHHhcCCCCEEEECH
Confidence 47999999999999999988763 34677888886654 344555566789999996
No 152
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=90.66 E-value=2.1 Score=27.29 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 86 TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 86 ~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
..+++.+.+.|+.+|+.| ..|.+++.++=...+++|..
T Consensus 54 ~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 91 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQL 91 (164)
T ss_dssp HHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHH
Confidence 677899999999999998 55778899988888888864
No 153
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=90.47 E-value=3.3 Score=31.04 Aligned_cols=82 Identities=6% Similarity=0.043 Sum_probs=60.4
Q ss_pred EEEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc-CceEEEEecC-------CC-----HHHHHHH
Q psy13287 52 TQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL-GYCCYYIHAR-------MA-----QAHRNRV 118 (140)
Q Consensus 52 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~-~~~v~~~h~~-------~~-----~~~R~~~ 118 (140)
.+.+.-+.++.|.-.+..+.+.. ++++||.|++...|..+++.|+.. +-.|..+=+. .+ ..+|..+
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~~-~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~ 94 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAERH-AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLST 94 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHS-SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHHh-CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHH
Confidence 44555567788888888888764 667999999999999999999875 3335443321 11 2368999
Q ss_pred HHHhhcCCccEEEEec
Q psy13287 119 FHDFRSGLCRNLVCSG 134 (140)
Q Consensus 119 ~~~f~~g~~~vlv~T~ 134 (140)
+.++..++-.|+|+|-
T Consensus 95 l~~L~~~~~~ivv~sv 110 (483)
T 3hjh_A 95 LYQLPTMQRGVLIVPV 110 (483)
T ss_dssp HHHGGGCCSSEEEEEH
T ss_pred HHHHHhCCCCEEEEEH
Confidence 9999988888888874
No 154
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=90.46 E-value=0.88 Score=34.29 Aligned_cols=55 Identities=5% Similarity=0.143 Sum_probs=42.6
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc--------CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL--------GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~--------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++||.++++.-+..+++.+++. +..+..+.|+.+... .++.+..+..+|+|||+
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~Iiv~Tp 209 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATP 209 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcCCCCEEEECc
Confidence 47999999999999999988763 345788888876543 44555566789999997
No 155
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=90.12 E-value=0.5 Score=35.18 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=43.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..+++||.|+++.-++.+++.+++. +..+..++|+.+..++ ..+..+|+|+|.
T Consensus 156 ~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~ 212 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTW 212 (510)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEH
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeH
Confidence 3459999999999999999999876 2478999999877654 457789999996
No 156
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=89.64 E-value=2.7 Score=26.80 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=39.1
Q ss_pred CCcEEEEeCc--------------hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 76 INQSIIFCNS--------------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 76 ~~~~lIF~~t--------------~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
.+.+|||.|. ..+++.+.+.|+.+|+.| ..+.+++.++=...+++|..
T Consensus 33 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 33 RGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDV-HVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp SEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEE-EEEESCCHHHHHHHHHHHHT
T ss_pred ceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHhhh
Confidence 3457888765 347999999999999998 56788899998888888876
No 157
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=89.53 E-value=0.74 Score=31.58 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=37.4
Q ss_pred HHHHHHHhhC---CCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCCCH
Q psy13287 65 HCLNTLFSKL---QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMAQ 112 (140)
Q Consensus 65 ~~l~~ll~~~---~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~~~ 112 (140)
+.+.+++... +..++++||.+-..+...+..|+..|+ ++..|.|++..
T Consensus 216 ~~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 216 DELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp HHHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred HHHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 3455555432 356799999998889999999999999 59999999764
No 158
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=89.18 E-value=0.35 Score=33.50 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=42.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
.+-+|||+|+..+++.+.+.|+..|+.|. .|.+++.++=...+++|..
T Consensus 43 rG~~LIinn~~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 90 (272)
T 3h11_A 43 LGICLIIDCIGNETELLRDTFTSLGYEVQ-KFLHLSMHGISQILGQFAC 90 (272)
T ss_dssp SEEEEEEESSCCCCSHHHHHHHHHTEEEE-EEESCBHHHHHHHHHHHHT
T ss_pred ceEEEEECCchHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 45689999999999999999999999985 5668999998899999865
No 159
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=89.05 E-value=2.5 Score=26.31 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC
Q psy13287 85 STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG 125 (140)
Q Consensus 85 t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g 125 (140)
|..+++.+.+.|+..|+.|. .|.+++.++=...+++|...
T Consensus 39 t~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 39 TDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 78 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHHh
Confidence 45578999999999999975 56678898888888888653
No 160
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=88.47 E-value=2.7 Score=29.11 Aligned_cols=48 Identities=13% Similarity=0.251 Sum_probs=39.7
Q ss_pred CCcEEEEeCc--------------hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 76 INQSIIFCNS--------------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 76 ~~~~lIF~~t--------------~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
.+-+|||+|. ..+++.+.+.|+..|+.|. .+.+++.++=...+++|..
T Consensus 21 rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 82 (278)
T 3od5_A 21 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVST 82 (278)
T ss_dssp CCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred cCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 3558898885 3789999999999999985 5668999998888888865
No 161
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=88.21 E-value=3.6 Score=28.41 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=39.6
Q ss_pred CcEEEEeCc-------------hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC
Q psy13287 77 NQSIIFCNS-------------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG 125 (140)
Q Consensus 77 ~~~lIF~~t-------------~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g 125 (140)
+-+|||.|. ..+++.+++.|+..|+.| ..+.+++.++=...+++|...
T Consensus 33 g~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 33 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV-TVFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEE-EEecCcCHHHHHHHHHHHHHh
Confidence 346777764 788999999999999998 466789999999999999753
No 162
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=87.88 E-value=1 Score=30.87 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=36.7
Q ss_pred HHHHHHHHhh--C-CCCcEEEEeCchHHHHHHHHHHH-hcCc-eEEEEecCC
Q psy13287 64 VHCLNTLFSK--L-QINQSIIFCNSTQRVELLAKKIT-ELGY-CCYYIHARM 110 (140)
Q Consensus 64 ~~~l~~ll~~--~-~~~~~lIF~~t~~~~~~~~~~L~-~~~~-~v~~~h~~~ 110 (140)
.+.+.+.+.. . +..++++||.+-..+...+..|+ ..|+ ++..+.|++
T Consensus 218 ~~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 218 AEELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp HHHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 3455566665 3 35678999999888889999998 8898 699999984
No 163
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=87.86 E-value=7.2 Score=30.36 Aligned_cols=81 Identities=10% Similarity=0.080 Sum_probs=58.3
Q ss_pred EEEEEcCccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc--CceEEEEec--------------------CC
Q psy13287 53 QYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHA--------------------RM 110 (140)
Q Consensus 53 ~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h~--------------------~~ 110 (140)
+...-+.+..|.-.+..++... +.++||.+++...|..+++.|+.. +-.|.++-+ ..
T Consensus 35 ~~l~g~~gs~k~~~~a~~~~~~-~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~~ 113 (661)
T 2d7d_A 35 QTLLGATGTGKTFTVSNLIKEV-NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDA 113 (661)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH-CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCEE
T ss_pred EEEECcCCcHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhhc
Confidence 3445567788988888887664 457999999999999999999876 234554431 11
Q ss_pred --C---HHHHHHHHHHhhcCCccEEEEec
Q psy13287 111 --A---QAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 111 --~---~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+ ...|..++.++..++-.|+|+|-
T Consensus 114 ~~~~~i~~~Rl~~l~~L~~~~~~ivV~sv 142 (661)
T 2d7d_A 114 SINDEIDKLRHSATSALFERRDVIIIASV 142 (661)
T ss_dssp EECHHHHHHHHHHHHHHHHCSCEEEEECG
T ss_pred ccCHHHHHHHHHHHHHHHhCCCeEEEecH
Confidence 2 45799999999877544666654
No 164
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=87.83 E-value=2.5 Score=28.98 Aligned_cols=40 Identities=13% Similarity=0.069 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC
Q psy13287 85 STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG 125 (140)
Q Consensus 85 t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g 125 (140)
+..+++.+.+.|+..|+.|. .+.+++.++=...+++|...
T Consensus 42 ~~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 81 (259)
T 3sir_A 42 TNVDCENLTRVLKQLDFEVT-VYKDCRYKDILRTIEYSASQ 81 (259)
T ss_dssp -CCHHHHHHHHHHHTTCEEE-EEEECSHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 34689999999999999974 66689999988899999753
No 165
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=87.78 E-value=4 Score=26.39 Aligned_cols=49 Identities=12% Similarity=0.235 Sum_probs=39.7
Q ss_pred CCcEEEEeCc--------------hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC
Q psy13287 76 INQSIIFCNS--------------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG 125 (140)
Q Consensus 76 ~~~~lIF~~t--------------~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g 125 (140)
.+.+|||+|. ..+++.+.+.|+.+|+.|..+ -+++.++=...+++|...
T Consensus 44 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~-~dlt~~em~~~l~~~~~~ 106 (179)
T 3p45_A 44 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCF-NDLKAEELLLKIHEVSTV 106 (179)
T ss_dssp CCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHTS
T ss_pred cCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHHHhhh
Confidence 4568999885 368999999999999998554 579999988888888753
No 166
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=87.61 E-value=3.7 Score=27.88 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC
Q psy13287 86 TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG 125 (140)
Q Consensus 86 ~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g 125 (140)
..+++.+++.|++.|+.|. .+.+++.++=...+++|...
T Consensus 40 ~~D~~~l~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 78 (250)
T 2j32_A 40 DVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 78 (250)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 4589999999999999984 66789999999999999754
No 167
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=87.61 E-value=0.42 Score=29.98 Aligned_cols=35 Identities=11% Similarity=0.234 Sum_probs=29.9
Q ss_pred CCcEEEEeCch---------HHHHHHHHHHHhcCceEEEEecCC
Q psy13287 76 INQSIIFCNST---------QRVELLAKKITELGYCCYYIHARM 110 (140)
Q Consensus 76 ~~~~lIF~~t~---------~~~~~~~~~L~~~~~~v~~~h~~~ 110 (140)
..++++||.+- ..+..++..|+..|+++..+.|++
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 56899999887 457888999999999999999993
No 168
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=86.68 E-value=0.62 Score=27.70 Aligned_cols=34 Identities=9% Similarity=0.141 Sum_probs=28.8
Q ss_pred cEEEEeCchHHHHHHHHHHHhc------C-ceEEEEecCCC
Q psy13287 78 QSIIFCNSTQRVELLAKKITEL------G-YCCYYIHARMA 111 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L~~~------~-~~v~~~h~~~~ 111 (140)
++++||.+-..+...+..|+.. | .++..+.|++.
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 7899999988888999999888 3 47999999854
No 169
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=86.58 E-value=5.1 Score=27.26 Aligned_cols=59 Identities=7% Similarity=0.023 Sum_probs=42.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhh--cCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~--~g~~~vlv~T~ 134 (140)
.-++++.--+.+.++++++.++..|.++..+..+++..+ -...++... -|.+++||..-
T Consensus 31 Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 31 DSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 345555556778889999999999989999999986543 333333332 28999999653
No 170
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=86.38 E-value=1.1 Score=32.06 Aligned_cols=52 Identities=8% Similarity=-0.069 Sum_probs=38.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc-----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~-----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++||.++++.-+..+++.+++. +..+...+++.+... ......+|+|+|.
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ivv~T~ 151 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTP 151 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-------TCCCCCSEEEECH
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-------hhcCCCCEEEECc
Confidence 347999999999999998888764 467788887755321 2245678999986
No 171
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=86.26 E-value=0.88 Score=31.19 Aligned_cols=46 Identities=9% Similarity=0.059 Sum_probs=34.6
Q ss_pred HHHHHHHhhC---CCCcEEEEeCchHH-HHHHHHHHHhcCc-eEEEEecCC
Q psy13287 65 HCLNTLFSKL---QINQSIIFCNSTQR-VELLAKKITELGY-CCYYIHARM 110 (140)
Q Consensus 65 ~~l~~ll~~~---~~~~~lIF~~t~~~-~~~~~~~L~~~~~-~v~~~h~~~ 110 (140)
+.+.+.+... +..+++|||.+-.. +..++..|+..|+ +|..+.|++
T Consensus 72 ~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~ 122 (280)
T 1urh_A 72 ETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGL 122 (280)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH
Confidence 4455555543 35678899988665 8889999999999 699999974
No 172
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=86.11 E-value=2.8 Score=29.60 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=40.2
Q ss_pred CCcEEEEeCch------------HHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 76 INQSIIFCNST------------QRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 76 ~~~~lIF~~t~------------~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
.+-+|||+|.. .+++.+.+.|+.+|+.| .++.+++.++=...+++|..
T Consensus 61 rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~ 120 (316)
T 2fp3_A 61 RGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTI-FPYGNVNQDQFFKLLTMVTS 120 (316)
T ss_dssp SEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEE-EEECSCCHHHHHHHHHHHHT
T ss_pred CcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEccCCCHHHHHHHHHHHHH
Confidence 35578988763 78999999999999998 56778999998999999964
No 173
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=86.08 E-value=1.6 Score=36.17 Aligned_cols=49 Identities=6% Similarity=-0.139 Sum_probs=42.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++++|-++++.-+..+++.+++..-.+..++|+.+ .+++.+|+|+|+
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tp 274 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTT 274 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEH
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeCh
Confidence 4678999999999999999999887558999999987 246789999996
No 174
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=85.68 E-value=0.64 Score=36.37 Aligned_cols=52 Identities=6% Similarity=0.048 Sum_probs=42.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh---cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITE---LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~---~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+++++-++++.-+..+++.++. .|+++..++|+.+.+.+. .++.+|+|+|+
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tp 122 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATA 122 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECH
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECH
Confidence 57899999999999999999864 378999999998765431 24679999997
No 175
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=85.53 E-value=4.6 Score=25.96 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=37.6
Q ss_pred CcEEEEeC--------------chHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC
Q psy13287 77 NQSIIFCN--------------STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG 125 (140)
Q Consensus 77 ~~~lIF~~--------------t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g 125 (140)
+.+|||.| |..+++.+.+.|+.+|+.| ..|-+++.++=...+++|...
T Consensus 45 G~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V-~v~~dlt~~em~~~l~~~s~~ 106 (173)
T 2ql9_A 45 GKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV-IVYNDCSCAKMQDLLKKASEE 106 (173)
T ss_dssp EEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred eEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 45778776 3467889999999999998 455688888888888888754
No 176
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=85.48 E-value=0.91 Score=35.39 Aligned_cols=53 Identities=9% Similarity=0.067 Sum_probs=42.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh---cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITE---LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~---~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..+++++.++++.-+..+++.++. .|+++..++|+....++ ..+..+|+|||+
T Consensus 67 ~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tp 122 (702)
T 2p6r_A 67 KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTS 122 (702)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEH
T ss_pred hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECH
Confidence 367899999999999999998854 37899999998766443 125789999997
No 177
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=85.43 E-value=0.87 Score=31.01 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=31.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARM 110 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~ 110 (140)
+..++++||.+-..+...+..|+..|+ ++..+.|++
T Consensus 222 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 258 (271)
T 1e0c_A 222 PDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 258 (271)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcH
Confidence 356789999998888999999999999 588999984
No 178
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=85.36 E-value=4.2 Score=28.68 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=41.1
Q ss_pred CCcEEEEeCc-------------hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC
Q psy13287 76 INQSIIFCNS-------------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG 125 (140)
Q Consensus 76 ~~~~lIF~~t-------------~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g 125 (140)
.+-+|||.|. ..+++.+++.|+.+|+.| ..+.+++.++=...+++|...
T Consensus 60 rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 60 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV-TVFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp CCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHSS
T ss_pred cCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHHh
Confidence 3558898875 788999999999999998 466789999999999999753
No 179
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=85.33 E-value=5.6 Score=27.52 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC
Q psy13287 85 STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG 125 (140)
Q Consensus 85 t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g 125 (140)
+..+++.+.+.|+.+|+.| ..+.+++.++=...+++|...
T Consensus 67 t~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~~ 106 (277)
T 4ehd_A 67 TDVDAANLRETFRNLKYEV-RNKNDLTREEIVELMRDVSKE 106 (277)
T ss_dssp HHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHhh
Confidence 3558999999999999997 567789999988999999753
No 180
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=85.31 E-value=0.73 Score=30.68 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=31.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~ 111 (140)
+..++++||.+-..+...+..|+..|.++..|.|++.
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHH
Confidence 3567899999999999999999999977888998843
No 181
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=85.16 E-value=1.7 Score=35.52 Aligned_cols=49 Identities=8% Similarity=0.001 Sum_probs=41.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++||.++++.-+..+++.|++. +..+..++|+.+. +++.+++|+|+
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~-----------~~~~~IlV~Tp 131 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQI-----------NPDANCLIMTT 131 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCEE-----------CTTSSEEEEEH
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcc-----------CCCCCEEEECH
Confidence 4578999999999999999999886 6799999999752 36689999996
No 182
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=84.96 E-value=1.7 Score=30.58 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=35.8
Q ss_pred HHHHHHHhhC---CCCcEEEEeCchH-HHHHHHHHHHhcCc-eEEEEecCC
Q psy13287 65 HCLNTLFSKL---QINQSIIFCNSTQ-RVELLAKKITELGY-CCYYIHARM 110 (140)
Q Consensus 65 ~~l~~ll~~~---~~~~~lIF~~t~~-~~~~~~~~L~~~~~-~v~~~h~~~ 110 (140)
+.+.+.+... +..+++|||.+-. .+..++..|+..|+ +|..+.|++
T Consensus 97 ~~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 97 EQFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 4566666653 3567899998766 78889999999998 599999873
No 183
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=84.36 E-value=6.6 Score=27.04 Aligned_cols=47 Identities=11% Similarity=0.223 Sum_probs=38.5
Q ss_pred CcEEEEeCc--------------hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 77 NQSIIFCNS--------------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 77 ~~~lIF~~t--------------~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
+-+|||.|. ..+++.+.+.|+.+|+.|. ++.+++.++=...+++|..
T Consensus 22 g~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 82 (277)
T 1nw9_B 22 GHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVE-VKGDLTAKKMVLALLELAR 82 (277)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEE-EEESCCHHHHHHHHHHHHH
T ss_pred cEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EEcCCCHHHHHHHHHHHHH
Confidence 457787765 3589999999999999984 5678999998899999964
No 184
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=84.24 E-value=1.1 Score=30.50 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=33.7
Q ss_pred HHHHHHHhhC---CCCcEEEEeCchH-HHHHHHHHHHhcCc-eEEEEecCC
Q psy13287 65 HCLNTLFSKL---QINQSIIFCNSTQ-RVELLAKKITELGY-CCYYIHARM 110 (140)
Q Consensus 65 ~~l~~ll~~~---~~~~~lIF~~t~~-~~~~~~~~L~~~~~-~v~~~h~~~ 110 (140)
+.+.+.+... +..+++|||.+-. .+..++..|+..|+ +|..+.|++
T Consensus 67 ~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~ 117 (271)
T 1e0c_A 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGL 117 (271)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHH
T ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 3444445442 3567889998765 78889999999998 588898873
No 185
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=83.88 E-value=1.6 Score=29.83 Aligned_cols=52 Identities=10% Similarity=-0.008 Sum_probs=39.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcC----ceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELG----YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~----~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+++||.|+++.-++.+.+.+++.+ ..+..++|+.+... -..+..+|+|+|.
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~ 212 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTW 212 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEch
Confidence 4589999999999999999998763 35778888765432 1225678999986
No 186
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=83.61 E-value=1.9 Score=30.45 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=38.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc----CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL----GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++||.++++.-++.+++.+++. ++.+...+++..... .....+|+|+|.
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~iiv~T~ 129 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN--------KQINAQVIVGTP 129 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT--------SCBCCSEEEECH
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh--------ccCCCCEEEEcH
Confidence 3568999999999999999998874 566777777643221 233578888886
No 187
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=83.42 E-value=2.9 Score=27.69 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=33.5
Q ss_pred HHHHHHhhCC-CCcEEEEeCchH-HHHHHHHHHHhcCce-EEEEecC
Q psy13287 66 CLNTLFSKLQ-INQSIIFCNSTQ-RVELLAKKITELGYC-CYYIHAR 109 (140)
Q Consensus 66 ~l~~ll~~~~-~~~~lIF~~t~~-~~~~~~~~L~~~~~~-v~~~h~~ 109 (140)
.+.+.+.... ..+++|||.+.. .+..++..|+ .|+. +..+.|+
T Consensus 50 ~~~~~~~~l~~~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 50 GLTELFQTLGLRSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp HHHHHHHHTTCCSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred HHHHHHHhcCCCCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 4455555543 567899998877 8889999999 9994 8899988
No 188
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=82.79 E-value=2.5 Score=28.78 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=34.6
Q ss_pred HHHHHHhh--C-CCCcEEEEeCchHHHHHHHHHHHh-cCc-eEEEEecCC
Q psy13287 66 CLNTLFSK--L-QINQSIIFCNSTQRVELLAKKITE-LGY-CCYYIHARM 110 (140)
Q Consensus 66 ~l~~ll~~--~-~~~~~lIF~~t~~~~~~~~~~L~~-~~~-~v~~~h~~~ 110 (140)
.+.+.+.. . +..++++||.+-..+...+..|++ .|+ ++..|.|++
T Consensus 213 ~l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 213 ELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp HHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 45555543 2 356799999998888888999986 898 499999983
No 189
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=82.66 E-value=2.3 Score=26.37 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=27.7
Q ss_pred HHHHHHHHhhCCCCcEEE-Ee-CchHHHH----HHHHHHHhcCc---eEEEEecCCC
Q psy13287 64 VHCLNTLFSKLQINQSII-FC-NSTQRVE----LLAKKITELGY---CCYYIHARMA 111 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lI-F~-~t~~~~~----~~~~~L~~~~~---~v~~~h~~~~ 111 (140)
+..+...+.. ...+.+| || .+-..+. +++..|++.|+ ++..+.|++.
T Consensus 56 ~~~l~~~l~~-~~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 56 YEKLAKTLFE-EKKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWE 111 (152)
T ss_dssp HHHHHHHHHH-TTCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHH
T ss_pred HHHHHHHhcc-cCCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHH
Confidence 3444444443 2344454 59 4544433 34477888886 7889999954
No 190
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=82.30 E-value=1.4 Score=30.21 Aligned_cols=45 Identities=7% Similarity=0.037 Sum_probs=33.7
Q ss_pred HHHHHHhhC---CCCcEEEEeCchH-HHHHHHHHHHhcCc-eEEEEecCC
Q psy13287 66 CLNTLFSKL---QINQSIIFCNSTQ-RVELLAKKITELGY-CCYYIHARM 110 (140)
Q Consensus 66 ~l~~ll~~~---~~~~~lIF~~t~~-~~~~~~~~L~~~~~-~v~~~h~~~ 110 (140)
.+.+.+... +..++++||.+-. .+..++..|+..|+ +|..+.|++
T Consensus 66 ~~~~~~~~~gi~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 115 (285)
T 1uar_A 66 EFAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGR 115 (285)
T ss_dssp HHHHHHHHTTCCTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 455555543 3567889998866 67888999999998 588999874
No 191
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=82.15 E-value=3.1 Score=30.79 Aligned_cols=50 Identities=6% Similarity=0.171 Sum_probs=36.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++||.|+ ..-+..+.+.+++. +.++..+||+... ...+..+|+|+|.
T Consensus 85 ~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v~~~~g~~~~---------~~~~~~~ivi~t~ 136 (500)
T 1z63_A 85 ELTPSLVICP-LSVLKNWEEELSKFAPHLRFAVFHEDRSK---------IKLEDYDIILTTY 136 (500)
T ss_dssp CCSSEEEEEC-STTHHHHHHHHHHHCTTSCEEECSSSTTS---------CCGGGSSEEEEEH
T ss_pred CCCCEEEEcc-HHHHHHHHHHHHHHCCCceEEEEecCchh---------ccccCCcEEEeeH
Confidence 4578999999 45778888888876 5688889988532 2234567888885
No 192
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=82.14 E-value=1.6 Score=30.20 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=35.7
Q ss_pred HHHHHHHhh--C-CCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 65 HCLNTLFSK--L-QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 65 ~~l~~ll~~--~-~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
+.+.+.+.. . +..++++||.+-..+...+..|+..|+. +..|.|++.
T Consensus 226 ~~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 226 EELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred HHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 345555543 2 3567999999988888889999999995 889999843
No 193
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=81.95 E-value=3.7 Score=29.97 Aligned_cols=48 Identities=10% Similarity=0.098 Sum_probs=37.1
Q ss_pred HHHHHHHHhhC---CCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCCC
Q psy13287 64 VHCLNTLFSKL---QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 111 (140)
Q Consensus 64 ~~~l~~ll~~~---~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~~ 111 (140)
.+.+.+.+... +..++++||.+-..+..++..|+..|+ ++..|.|+++
T Consensus 188 ~~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~ 239 (423)
T 2wlr_A 188 DEQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQ 239 (423)
T ss_dssp HHHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHH
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHH
Confidence 34555566543 356789999998889999999999998 6999999843
No 194
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=81.81 E-value=6.4 Score=27.66 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=39.0
Q ss_pred CcEEEEeCc--------------hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC
Q psy13287 77 NQSIIFCNS--------------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG 125 (140)
Q Consensus 77 ~~~lIF~~t--------------~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g 125 (140)
+-+|||.|. ..+++.+++.|+.+|+.| ..+-+++.++=...+++|...
T Consensus 70 g~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~~ 131 (305)
T 1f1j_A 70 GKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV-IVYNDCSCAKMQDLLKKASEE 131 (305)
T ss_dssp EEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred CEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEE-EEecCcCHHHHHHHHHHHHHh
Confidence 347888873 478999999999999998 456788999888888889754
No 195
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=81.67 E-value=5.7 Score=22.99 Aligned_cols=57 Identities=7% Similarity=-0.019 Sum_probs=40.2
Q ss_pred CCCcEEEEeC------chHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 75 QINQSIIFCN------STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 75 ~~~~~lIF~~------t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
...+++||.. ....|.++.+.|.+.|+....+.=..+++.+..+.+..-...+..++
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~if 78 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLY 78 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEE
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 4578999987 48899999999999998877776555666666665543333444443
No 196
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=81.16 E-value=2.5 Score=28.78 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=33.4
Q ss_pred HHHHHHHhh--C-CCCcEEEEeCch-HHHHHHHHHHHhcCc-eEEEEecCC
Q psy13287 65 HCLNTLFSK--L-QINQSIIFCNST-QRVELLAKKITELGY-CCYYIHARM 110 (140)
Q Consensus 65 ~~l~~ll~~--~-~~~~~lIF~~t~-~~~~~~~~~L~~~~~-~v~~~h~~~ 110 (140)
+.+.+.+.. . +..+++|||.+- ..+..++..|+..|+ +|..+.|++
T Consensus 63 ~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 113 (277)
T 3aay_A 63 QQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGR 113 (277)
T ss_dssp HHHHHHHHHHTCCTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCH
Confidence 345555544 2 346788999875 357788899999998 689999984
No 197
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=80.29 E-value=1.4 Score=33.29 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=33.9
Q ss_pred HhhCC-CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCC
Q psy13287 71 FSKLQ-INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 111 (140)
Q Consensus 71 l~~~~-~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~ 111 (140)
+..++ ..++++||.+-..+...+..|++.|+++..+.|++.
T Consensus 518 ~~~~~~~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~ 559 (565)
T 3ntd_A 518 MHELPKDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYR 559 (565)
T ss_dssp GGGSCTTSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred HhhcCCcCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHH
Confidence 34443 467899999999999999999999999999999853
No 198
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=80.15 E-value=6.8 Score=22.86 Aligned_cols=57 Identities=5% Similarity=-0.065 Sum_probs=39.8
Q ss_pred CCCcEEEEe------CchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 75 QINQSIIFC------NSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 75 ~~~~~lIF~------~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
...+++||. ++...|.++.+.|...|+....+.=..+++.|..+.+.--...+..++
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~if 76 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY 76 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEE
Confidence 457899998 578889999999999998877776555666666655433223444443
No 199
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=80.09 E-value=0.81 Score=27.64 Aligned_cols=35 Identities=9% Similarity=0.227 Sum_probs=28.1
Q ss_pred CCcEEEEeCchHH---------HHHHHHHHHhcCceEEEEecCC
Q psy13287 76 INQSIIFCNSTQR---------VELLAKKITELGYCCYYIHARM 110 (140)
Q Consensus 76 ~~~~lIF~~t~~~---------~~~~~~~L~~~~~~v~~~h~~~ 110 (140)
..++++||.+-.. +..+++.|...|+++..+.|++
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~ 126 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 126 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCH
Confidence 4679999987554 3567888999999999999983
No 200
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=79.61 E-value=2 Score=32.52 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=32.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEec-CCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHA-RMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~-~~~ 111 (140)
+..++++||.+-..+...+..|+..|+++..+.| ++.
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~~ 358 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEA 358 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCChH
Confidence 3578899999988888899999999999999999 753
No 201
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=79.26 E-value=3.9 Score=25.73 Aligned_cols=74 Identities=9% Similarity=0.014 Sum_probs=46.8
Q ss_pred EEEEEEcCccchHHHHHHHHhhC----CCCcEEEEeCchHHHHHHHHHHHh-cCceEEEEecCCCHH-HHHHHHHHhhcC
Q psy13287 52 TQYYAFVQERQKVHCLNTLFSKL----QINQSIIFCNSTQRVELLAKKITE-LGYCCYYIHARMAQA-HRNRVFHDFRSG 125 (140)
Q Consensus 52 ~~~~~~~~~~~k~~~l~~ll~~~----~~~~~lIF~~t~~~~~~~~~~L~~-~~~~v~~~h~~~~~~-~R~~~~~~f~~g 125 (140)
...++.+.+.+|.+.+.. .+.+ ... -|+ .|..++ +.|++ .|+.|..+... ++ -+..+.+..++|
T Consensus 12 g~V~lsv~D~dK~~~v~~-ak~~~~ll~Gf-~l~--AT~gTa----~~L~e~~Gl~v~~v~k~--~eGG~p~I~d~I~~g 81 (152)
T 1b93_A 12 KHIALVAHDHCKQMLMSW-VERHQPLLEQH-VLY--ATGTTG----NLISRATGMNVNAMLSG--PMGGDQQVGALISEG 81 (152)
T ss_dssp CEEEEEECGGGHHHHHHH-HHHTHHHHTTS-EEE--EETTHH----HHHHHHHCCCCEEECCG--GGTHHHHHHHHHHTT
T ss_pred CEEEEEEehhhHHHHHHH-HHHHHHHhCCC-EEE--EccHHH----HHHHHHhCceeEEEEec--CCCCCchHHHHHHCC
Confidence 345666777788554333 2222 122 233 244444 44555 69998888754 23 577899999999
Q ss_pred CccEEEEecc
Q psy13287 126 LCRNLVCSGD 135 (140)
Q Consensus 126 ~~~vlv~T~~ 135 (140)
+++.+|-|.-
T Consensus 82 eIdlVInt~~ 91 (152)
T 1b93_A 82 KIDVLIFFWD 91 (152)
T ss_dssp CCCEEEEECC
T ss_pred CccEEEEcCC
Confidence 9999998864
No 202
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=79.24 E-value=16 Score=26.57 Aligned_cols=68 Identities=4% Similarity=0.045 Sum_probs=47.2
Q ss_pred HHHHHHHhhCCCCcEEEEeC--chH---HHHHHHHHHHhcCceEEEEec---CCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 65 HCLNTLFSKLQINQSIIFCN--STQ---RVELLAKKITELGYCCYYIHA---RMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 65 ~~l~~ll~~~~~~~~lIF~~--t~~---~~~~~~~~L~~~~~~v~~~h~---~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
..+.+.++.....+++|.+. +.. -.+++.+.|.+.|+.+..+.+ .-+.+.=.+..+.+++.+++++|+
T Consensus 32 ~~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 107 (407)
T 1vlj_A 32 PKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLG 107 (407)
T ss_dssp GGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 34555566554467787775 333 377888889888888877766 334556677778888888898886
No 203
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=79.22 E-value=5.7 Score=23.92 Aligned_cols=39 Identities=3% Similarity=-0.099 Sum_probs=33.8
Q ss_pred CchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHh
Q psy13287 84 NSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDF 122 (140)
Q Consensus 84 ~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f 122 (140)
.+++.|.++.+.|...|+....+.-+++++.|.+..++.
T Consensus 14 ~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 14 AIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence 345677899999999999998888888999999999887
No 204
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=79.14 E-value=5.6 Score=31.62 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=40.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHHHHHHHHh--------hcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHRNRVFHDF--------RSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R~~~~~~f--------~~g~~~vlv~T~ 134 (140)
..+++||.|+ ...+..+.+.+.+. +..+..+||+..........+-+ ..++.+|+|+|-
T Consensus 285 ~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy 353 (800)
T 3mwy_W 285 QNGPHIIVVP-LSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTY 353 (800)
T ss_dssp CCSCEEEECC-TTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECT
T ss_pred CCCCEEEEEC-chHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecH
Confidence 4678999999 66778888888776 67899999985544333332222 235678999885
No 205
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=79.09 E-value=1.7 Score=33.90 Aligned_cols=52 Identities=4% Similarity=-0.054 Sum_probs=41.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh---cCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITE---LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~---~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+++++.++++.-+..+++.++. .|.++..++|+....++ .+ ++.+|+|||+
T Consensus 75 ~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~--~~~~Iiv~Tp 129 (715)
T 2va8_A 75 GGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL--KNYDIIITTY 129 (715)
T ss_dssp CSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG--GGCSEEEECH
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc--CCCCEEEEcH
Confidence 57899999999999999988853 37899999998776543 12 3679999997
No 206
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=78.87 E-value=3.5 Score=25.54 Aligned_cols=46 Identities=11% Similarity=0.207 Sum_probs=28.7
Q ss_pred HHHHHhhCC-CCcEEEEeC-chHHHHHHHHHH--------HhcCc-eEEEEecCCCH
Q psy13287 67 LNTLFSKLQ-INQSIIFCN-STQRVELLAKKI--------TELGY-CCYYIHARMAQ 112 (140)
Q Consensus 67 l~~ll~~~~-~~~~lIF~~-t~~~~~~~~~~L--------~~~~~-~v~~~h~~~~~ 112 (140)
+.+++...+ ..++++||. +-......+..| +..|+ ++..+.|++..
T Consensus 75 ~~~l~~~~~~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~ 131 (152)
T 1t3k_A 75 ISHLVQNVKDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNG 131 (152)
T ss_dssp HHHHHHTCCSCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHH
T ss_pred HHHHHHhcCCCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHH
Confidence 344444433 456888998 654444445544 34688 79999999653
No 207
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=78.23 E-value=10 Score=25.74 Aligned_cols=58 Identities=10% Similarity=0.056 Sum_probs=40.9
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHH-HHHHHHHHhh--cCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQA-HRNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~-~R~~~~~~f~--~g~~~vlv~T~ 134 (140)
-++++.-.+.+..+++++.+++.+.++..+..+++.+ +-...+++.. .|.+++||..-
T Consensus 34 a~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 34 ARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp CEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence 3444444556777888999998888999999998654 3445555553 38999999743
No 208
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=77.87 E-value=1.8 Score=32.95 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=36.4
Q ss_pred HHHHHHhhCC-CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCC
Q psy13287 66 CLNTLFSKLQ-INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA 111 (140)
Q Consensus 66 ~l~~ll~~~~-~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~ 111 (140)
.+.+.+..++ ..++++||.+-..+...+..|++.|+++..+.|++.
T Consensus 530 ~l~~~~~~l~~~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~ 576 (588)
T 3ics_A 530 ELRDRLEEVPVDKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFK 576 (588)
T ss_dssp HHTTCGGGSCSSSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred HHHHHHhhCCCCCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHH
Confidence 3444444453 467999999999999999999999999989989854
No 209
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=77.65 E-value=3.9 Score=29.50 Aligned_cols=47 Identities=11% Similarity=-0.056 Sum_probs=33.1
Q ss_pred HHHHHHHhhC---CCCcEEEEe-Cch-HHHHHHHHHHHhcCceEEEEecCCC
Q psy13287 65 HCLNTLFSKL---QINQSIIFC-NST-QRVELLAKKITELGYCCYYIHARMA 111 (140)
Q Consensus 65 ~~l~~ll~~~---~~~~~lIF~-~t~-~~~~~~~~~L~~~~~~v~~~h~~~~ 111 (140)
+.+.+.+... +..+++||| .+- ..+..++..|+..|++|..+.|++.
T Consensus 81 ~~f~~~l~~~gi~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~ 132 (373)
T 1okg_A 81 AEFIDWCMANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQ 132 (373)
T ss_dssp HHHHHHHHHTTCSSSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTH
T ss_pred HHHHHHHHHcCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHH
Confidence 4455555433 356789999 443 3445788899999999999999954
No 210
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=77.12 E-value=1.7 Score=30.32 Aligned_cols=48 Identities=13% Similarity=0.009 Sum_probs=35.7
Q ss_pred HHHHHHHHhhC---CCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCCC
Q psy13287 64 VHCLNTLFSKL---QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMA 111 (140)
Q Consensus 64 ~~~l~~ll~~~---~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~~ 111 (140)
.+.+.+.+... +..++++||.+-..+...+..|+..|+ ++..|-|++.
T Consensus 239 ~~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~ 290 (302)
T 3olh_A 239 PEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWV 290 (302)
T ss_dssp HHHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHH
T ss_pred HHHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 34555555532 346799999998888888888999998 6888888843
No 211
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=77.11 E-value=2.1 Score=30.09 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=35.5
Q ss_pred HHHHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHh-cCce-EEEEecC
Q psy13287 65 HCLNTLFSKL-QINQSIIFCNSTQRVELLAKKITE-LGYC-CYYIHAR 109 (140)
Q Consensus 65 ~~l~~ll~~~-~~~~~lIF~~t~~~~~~~~~~L~~-~~~~-v~~~h~~ 109 (140)
+.|.+.+... +..++++||.+-..+...+..|++ .|+. +..|.|+
T Consensus 247 ~~l~~~~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG 294 (318)
T 3hzu_A 247 EELERLYDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGS 294 (318)
T ss_dssp HHHHHHTTTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTH
T ss_pred HHHHHHhcCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCc
Confidence 4555555444 356799999999999999999987 8985 8899998
No 212
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=76.72 E-value=3.3 Score=25.50 Aligned_cols=73 Identities=8% Similarity=0.065 Sum_probs=44.9
Q ss_pred EEEEcCccchHHHHHHHHhhC----CCCcEEEEeCchHHHHHHHHHHHh-cCceEEEEecCCCHHHHHHHHHHhhcCCcc
Q psy13287 54 YYAFVQERQKVHCLNTLFSKL----QINQSIIFCNSTQRVELLAKKITE-LGYCCYYIHARMAQAHRNRVFHDFRSGLCR 128 (140)
Q Consensus 54 ~~~~~~~~~k~~~l~~ll~~~----~~~~~lIF~~t~~~~~~~~~~L~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~ 128 (140)
..+.+.+.+|.+.+.. .+.+ ...+ |+ .|..++ +.|++ .|+.|..+... +.+-|..+.+..++|+++
T Consensus 6 ialsv~D~dK~~~v~~-a~~~~~ll~Gf~-l~--AT~gTa----~~L~e~~Gl~v~~v~k~-~~eG~p~I~d~I~~geId 76 (134)
T 2xw6_A 6 LALIAHDAKKEEMVAF-CQRHREVLARFP-LV--ATGTTG----RRIEEATGLTVEKLLSG-PLGGDQQMGARVAEGRIL 76 (134)
T ss_dssp EEEEECGGGHHHHHHH-HHHTHHHHTTSC-EE--ECHHHH----HHHHHHHCCCCEECSCG-GGTHHHHHHHHHHTTCEE
T ss_pred EEEEEecccHHHHHHH-HHHHHHHhCCCE-EE--EccHHH----HHHHHhhCceEEEEEec-CCCCcchHHHHHHCCCcc
Confidence 3445667777544332 2222 2222 22 345554 44544 69998888743 224677899999999999
Q ss_pred EEEEecc
Q psy13287 129 NLVCSGD 135 (140)
Q Consensus 129 vlv~T~~ 135 (140)
.+|-|.-
T Consensus 77 lVInt~~ 83 (134)
T 2xw6_A 77 AVIFFRD 83 (134)
T ss_dssp EEEEECC
T ss_pred EEEEccC
Confidence 9998864
No 213
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=76.71 E-value=1.6 Score=35.51 Aligned_cols=63 Identities=6% Similarity=0.078 Sum_probs=39.8
Q ss_pred HHHhhCCCCcEEEEeCchHHHHHHHHHH-HhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 69 TLFSKLQINQSIIFCNSTQRVELLAKKI-TELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 69 ~ll~~~~~~~~lIF~~t~~~~~~~~~~L-~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++.....+++||.|++ .-+..+.+.+ +..+.++..+||+.....+....+.| +..+++|+|-
T Consensus 193 ~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~~~~~~~~~~~~~~~~~--~~~dIvI~T~ 256 (968)
T 3dmq_A 193 QQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPF--DTEQLVICSL 256 (968)
T ss_dssp HHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEECCHHHHHHHHHTTCSSS--TTCSEEEECH
T ss_pred HHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEEccchhhhhhhhccccc--ccCCEEEEcH
Confidence 33344455689999999 7777777777 55688888888864322111111111 3568888884
No 214
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=76.26 E-value=3.3 Score=28.57 Aligned_cols=46 Identities=4% Similarity=0.039 Sum_probs=33.1
Q ss_pred HHHHHHHhhC---CCCcEEEEeCc--hH-HHHHHHHHHHhcCc-eEEEEecCC
Q psy13287 65 HCLNTLFSKL---QINQSIIFCNS--TQ-RVELLAKKITELGY-CCYYIHARM 110 (140)
Q Consensus 65 ~~l~~ll~~~---~~~~~lIF~~t--~~-~~~~~~~~L~~~~~-~v~~~h~~~ 110 (140)
+.+.+.+... +..+++|||.+ -. .+..++..|+..|+ +|..+.|++
T Consensus 78 ~~~~~~l~~lgi~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 130 (296)
T 1rhs_A 78 AGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGF 130 (296)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCH
Confidence 3455555543 34678899987 33 47788899999998 588999974
No 215
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=76.06 E-value=14 Score=24.27 Aligned_cols=64 Identities=14% Similarity=0.018 Sum_probs=43.8
Q ss_pred HHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCce--EEEEecC--------CCHHHHHHHHHHhhcCCccEEEEecccC
Q psy13287 68 NTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC--CYYIHAR--------MAQAHRNRVFHDFRSGLCRNLVCSGDSS 137 (140)
Q Consensus 68 ~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~--v~~~h~~--------~~~~~R~~~~~~f~~g~~~vlv~T~~~~ 137 (140)
.+..+...-+.++|...|-.++..+++.+ .+++ |..+|.+ +++ +..+.+++..++|+.+|-+++
T Consensus 36 ~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~----e~~~~L~~~G~~V~t~tH~ls 109 (201)
T 1vp8_A 36 VERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPP----EVEEELRKRGAKIVRQSHILS 109 (201)
T ss_dssp HHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCH----HHHHHHHHTTCEEEECCCTTT
T ss_pred HHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCH----HHHHHHHhCCCEEEEEecccc
Confidence 33334446678888889999999999988 4455 4455554 444 455566667788888887654
No 216
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=75.88 E-value=4.5 Score=29.52 Aligned_cols=45 Identities=9% Similarity=0.180 Sum_probs=35.0
Q ss_pred HHHHHHhh--C-CCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCC
Q psy13287 66 CLNTLFSK--L-QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARM 110 (140)
Q Consensus 66 ~l~~ll~~--~-~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~ 110 (140)
.|.+.+.. . +..++++||.+-..+...+..|+..|+ ++..|.|++
T Consensus 345 ~l~~~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~ 393 (423)
T 2wlr_A 345 DITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGW 393 (423)
T ss_dssp HHHHHHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHH
T ss_pred HHHHHHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccH
Confidence 45555532 2 356789999999999999999999999 588999883
No 217
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=75.62 E-value=18 Score=27.94 Aligned_cols=56 Identities=14% Similarity=0.053 Sum_probs=37.1
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc---CceEEEEecCCCHHHHHHHHHHhhcC-----CccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL---GYCCYYIHARMAQAHRNRVFHDFRSG-----LCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~---~~~v~~~h~~~~~~~R~~~~~~f~~g-----~~~vlv~T~ 134 (140)
+++||.|++ ..+..+.+++.+. ...+..++|+. ..++...+..|..+ ..+|+|+|-
T Consensus 115 ~~~LiV~P~-sll~qW~~E~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~vvi~ty 178 (644)
T 1z3i_X 115 DKVIVVSPS-SLVRNWYNEVGKWLGGRVQPVAIDGGS-KDEIDSKLVNFISQQGMRIPTPILIISY 178 (644)
T ss_dssp SCEEEEECH-HHHHHHHHHHHHHHGGGCCEEEECSSC-HHHHHHHHHHHHCCCSSCCSCCEEEEEH
T ss_pred CcEEEEecH-HHHHHHHHHHHHHcCCCeeEEEEeCCC-HHHHHHHHHHHHHhcCCCCCCcEEEeeH
Confidence 468999986 6777788888765 35566777663 44444555555443 467999885
No 218
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=74.78 E-value=8.5 Score=21.36 Aligned_cols=43 Identities=7% Similarity=-0.028 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccEEE
Q psy13287 89 VELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLV 131 (140)
Q Consensus 89 ~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vlv 131 (140)
+.++.+.|...|+....+.=+.+++.|.+..+..-. ..+..++
T Consensus 21 ~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~if 65 (93)
T 1t1v_A 21 QSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIV 65 (93)
T ss_dssp HHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEE
T ss_pred HHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEE
Confidence 378888888888887777777777777776665531 2455544
No 219
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=74.66 E-value=9.5 Score=21.67 Aligned_cols=56 Identities=7% Similarity=-0.052 Sum_probs=39.3
Q ss_pred CCcEEEEe------CchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 76 INQSIIFC------NSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 76 ~~~~lIF~------~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
..+++||. +....|..+...|.+.++.+..+.-+.++..+....+.+....+..++
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 45688887 467788899999988888877777766666666666555434455543
No 220
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=74.59 E-value=13 Score=23.35 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=46.5
Q ss_pred chHHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecccCCC
Q psy13287 62 QKVHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAM 139 (140)
Q Consensus 62 ~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rG 139 (140)
+-...+.+.+.. ...+.+-|.|.+...+..+.+.|...|+.+..+.++-. .| .-.+.|+|-..+-|
T Consensus 45 ~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~v~t~~~~KG 112 (174)
T 3dmn_A 45 AGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVIVVPSFLAKG 112 (174)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEEEEEGGGCTT
T ss_pred HHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeEEEEccccCC
Confidence 334444444432 13566778899999999999999999988877766532 12 23688888888887
Q ss_pred C
Q psy13287 140 M 140 (140)
Q Consensus 140 l 140 (140)
+
T Consensus 113 l 113 (174)
T 3dmn_A 113 L 113 (174)
T ss_dssp C
T ss_pred c
Confidence 5
No 221
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=73.71 E-value=8.8 Score=25.81 Aligned_cols=60 Identities=8% Similarity=0.029 Sum_probs=38.8
Q ss_pred hHHHHHHHHhhC---------CCCcEEEEeCchHHHHHHHHHHHhcCc--eEEEEecCCCHHHHHHHHHHhhcC
Q psy13287 63 KVHCLNTLFSKL---------QINQSIIFCNSTQRVELLAKKITELGY--CCYYIHARMAQAHRNRVFHDFRSG 125 (140)
Q Consensus 63 k~~~l~~ll~~~---------~~~~~lIF~~t~~~~~~~~~~L~~~~~--~v~~~h~~~~~~~R~~~~~~f~~g 125 (140)
+...|..+|... ..+.+.|++++.+++++.-+.|.+.++ ++..+ ...+++.++.+.+..+
T Consensus 4 ~v~~L~~lL~g~~~p~~il~grd~~~yVla~~qrd~~W~rq~L~k~~~~~~~~V~---~~~~~~~~i~~~l~~~ 74 (227)
T 3gr1_A 4 MAAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTLWARQVLARGDYDKNARVI---NENEENKRISIWLDTY 74 (227)
T ss_dssp CSHHHHHHTCSCSCSCEEEECTTSCEEEECSSHHHHHHHHHHHHHTTCTTTEEEE---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCcEEEEEccccHHHHHHHHHHhcCCcCCeEEE---ehHHHHHHHHHHHHhc
Confidence 344555555433 245688888999999999888887753 44444 4455666666666554
No 222
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=73.19 E-value=3.5 Score=33.87 Aligned_cols=49 Identities=6% Similarity=-0.143 Sum_probs=40.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++|+-++++.-+..+++.|.+..-.+..++|+.+.. .+.+|+|+|+
T Consensus 128 ~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~-----------~~~~IvV~Tp 176 (1010)
T 2xgj_A 128 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITIN-----------PDAGCLVMTT 176 (1010)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEEC-----------TTCSEEEEEH
T ss_pred cCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccC-----------CCCCEEEEcH
Confidence 457899999999999999999987644899999987642 3578999996
No 223
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=72.41 E-value=14 Score=22.50 Aligned_cols=64 Identities=9% Similarity=0.022 Sum_probs=43.1
Q ss_pred HHHHHHHhhCCCCcEEEEeC------chHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 65 HCLNTLFSKLQINQSIIFCN------STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 65 ~~l~~ll~~~~~~~~lIF~~------t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
+.+.+++. ..+++||+- ....|.++.+.|...++....+.-..+++.|..+.+..-...+..++
T Consensus 26 ~~v~~~i~---~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~Vf 95 (135)
T 2wci_A 26 EKIQRQIA---ENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLW 95 (135)
T ss_dssp HHHHHHHH---HCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHhc---cCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEE
Confidence 34444443 356888876 57889999999999999887777766676666665544333444443
No 224
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=72.16 E-value=7.6 Score=30.43 Aligned_cols=48 Identities=4% Similarity=-0.161 Sum_probs=38.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhc-CceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITEL-GYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..+++|-++++.-|..+++.+.+. +..+....|+.. ..+..+++|+|+
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TP 305 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTY 305 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEH
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECc
Confidence 558999999999999999888654 777777788744 457789999987
No 225
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=71.94 E-value=5.9 Score=25.60 Aligned_cols=74 Identities=14% Similarity=0.068 Sum_probs=47.4
Q ss_pred EEEEEEcCccchHHHHHHHHhhC----CCCcEEEEeCchHHHHHHHHHHHh-cCceEEEEecCCCHH-HHHHHHHHhhcC
Q psy13287 52 TQYYAFVQERQKVHCLNTLFSKL----QINQSIIFCNSTQRVELLAKKITE-LGYCCYYIHARMAQA-HRNRVFHDFRSG 125 (140)
Q Consensus 52 ~~~~~~~~~~~k~~~l~~ll~~~----~~~~~lIF~~t~~~~~~~~~~L~~-~~~~v~~~h~~~~~~-~R~~~~~~f~~g 125 (140)
...++.+.+.+|.+.+.. .+.+ ... .|+ .|..++ +.|++ .|+.|..+... ++ -+..+.+..++|
T Consensus 28 g~V~lsv~D~dK~~lv~~-ak~~~~lL~Gf-~L~--AT~gTa----~~L~e~~Gl~v~~v~k~--~eGG~pqI~d~I~~g 97 (178)
T 1vmd_A 28 KRIALIAHDRRKRDLLEW-VSFNLGTLSKH-ELY--ATGTTG----ALLQEKLGLKVHRLKSG--PLGGDQQIGAMIAEG 97 (178)
T ss_dssp CEEEEEECGGGHHHHHHH-HHHSHHHHTTS-EEE--ECHHHH----HHHHHHHCCCCEECSCG--GGTHHHHHHHHHHTT
T ss_pred CEEEEEEehhhHHHHHHH-HHHHHHHhcCC-EEE--EchHHH----HHHHHHhCceeEEEeec--CCCCCchHHHHHHCC
Confidence 446666778888554332 3332 122 222 345554 45555 69998888643 23 577899999999
Q ss_pred CccEEEEecc
Q psy13287 126 LCRNLVCSGD 135 (140)
Q Consensus 126 ~~~vlv~T~~ 135 (140)
+++.+|-|.-
T Consensus 98 eIdlVInt~d 107 (178)
T 1vmd_A 98 KIDVLIFFWD 107 (178)
T ss_dssp SCCEEEEECC
T ss_pred CccEEEEccC
Confidence 9999998874
No 226
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=70.52 E-value=4.2 Score=29.92 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=42.9
Q ss_pred ccchHHH-HHHHHhhCC----CCcEEEEeCchHHHHHHHHHHHhc-----CceEEEEecCCCHHHHHHHHHHhhcCCccE
Q psy13287 60 ERQKVHC-LNTLFSKLQ----INQSIIFCNSTQRVELLAKKITEL-----GYCCYYIHARMAQAHRNRVFHDFRSGLCRN 129 (140)
Q Consensus 60 ~~~k~~~-l~~ll~~~~----~~~~lIF~~t~~~~~~~~~~L~~~-----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 129 (140)
+.-|-.. +..++.... ..++||.++++.-+..+++.+++. +..+....++.... .......+|
T Consensus 141 GsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~I 213 (479)
T 3fmp_B 141 GTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQI 213 (479)
T ss_dssp SSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-------TTCCCCCSE
T ss_pred CCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-------ccccCCCCE
Confidence 3445433 444544442 237999999999999998777653 45666666664422 112345689
Q ss_pred EEEec
Q psy13287 130 LVCSG 134 (140)
Q Consensus 130 lv~T~ 134 (140)
+|+|+
T Consensus 214 vv~Tp 218 (479)
T 3fmp_B 214 VIGTP 218 (479)
T ss_dssp EEECH
T ss_pred EEECc
Confidence 99986
No 227
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=70.42 E-value=17 Score=25.85 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCceEEEE---------ecCCCHHHHHH-HHHHhhcCCccEEEEec
Q psy13287 87 QRVELLAKKITELGYCCYYI---------HARMAQAHRNR-VFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 87 ~~~~~~~~~L~~~~~~v~~~---------h~~~~~~~R~~-~~~~f~~g~~~vlv~T~ 134 (140)
...+...+.|++.|++|..- -++ +.++|.+ ..+.|.+-+++.++|+-
T Consensus 31 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 31 KRFERAKSYLLQKGFHILEGSLTGRYDYYRSG-SIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp HHHHHHHHHHHHTTCEEEECTTTTCCBTTBSS-CHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred HHHHHHHHHHHhCCCEEEEcccccccccccCC-CHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 34556677888888887542 122 3555554 55567788999999974
No 228
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=69.95 E-value=3.2 Score=29.96 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=30.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
..++++||.+-..+...+..|+..|+. +..|.|++.
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 282 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWS 282 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHH
Confidence 567999999988888888999999994 889988864
No 229
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=69.83 E-value=8.2 Score=23.74 Aligned_cols=73 Identities=8% Similarity=0.021 Sum_probs=43.3
Q ss_pred EEEEcCccchHHHH--HHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHH----HHHHHHhhcCCc
Q psy13287 54 YYAFVQERQKVHCL--NTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHR----NRVFHDFRSGLC 127 (140)
Q Consensus 54 ~~~~~~~~~k~~~l--~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R----~~~~~~f~~g~~ 127 (140)
.++.+.+.+|...+ .+.+... +=. ||+ |..+ +++|++.|++|..+..-. ...| ..+.+.+++|++
T Consensus 27 vliSv~d~dK~~l~~~a~~l~~l--Gf~-i~A-T~GT----a~~L~~~Gi~v~~v~k~~-egg~~~~~~~i~d~i~~g~i 97 (143)
T 2yvq_A 27 ILIGIQQSFRPRFLGVAEQLHNE--GFK-LFA-TEAT----SDWLNANNVPATPVAWPS-QEGQNPSLSSIRKLIRDGSI 97 (143)
T ss_dssp EEEECCGGGHHHHHHHHHHHHTT--TCE-EEE-EHHH----HHHHHHTTCCCEEECCGG-GC-----CBCHHHHHHTTSC
T ss_pred EEEEecccchHHHHHHHHHHHHC--CCE-EEE-CchH----HHHHHHcCCeEEEEEecc-CCCcccccccHHHHHHCCCc
Confidence 56666776775432 3333332 212 332 3344 456677888887776431 1113 468999999999
Q ss_pred cEEEEecc
Q psy13287 128 RNLVCSGD 135 (140)
Q Consensus 128 ~vlv~T~~ 135 (140)
+.+|-|.-
T Consensus 98 ~lVInt~~ 105 (143)
T 2yvq_A 98 DLVINLPN 105 (143)
T ss_dssp CEEEECCC
T ss_pred eEEEECCC
Confidence 99998873
No 230
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=69.73 E-value=3.2 Score=31.43 Aligned_cols=36 Identities=11% Similarity=0.283 Sum_probs=30.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCC
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGY-CCYYIHARM 110 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~ 110 (140)
+..++++||.+-..+...+..|+..|+ +|..+.|++
T Consensus 62 ~~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~ 98 (539)
T 1yt8_A 62 RDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGL 98 (539)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCH
Confidence 357899999988889999999999999 588888873
No 231
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=69.56 E-value=12 Score=20.69 Aligned_cols=70 Identities=6% Similarity=0.017 Sum_probs=41.8
Q ss_pred cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc----CCccEEEEecc
Q psy13287 61 RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS----GLCRNLVCSGD 135 (140)
Q Consensus 61 ~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~----g~~~vlv~T~~ 135 (140)
..-...+...+... ..+ +..+.+..++. +.+.+..+.+..+...++...-...++.++. ..+.+++.|+.
T Consensus 11 ~~~~~~l~~~l~~~-g~~-v~~~~~~~~~~---~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 11 DEAATVVCEMLTAA-GFK-VIWLVDGSTAL---DQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHHHHHHHHHHHHT-TCE-EEEESCHHHHH---HHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESS
T ss_pred HHHHHHHHHHHHhC-CcE-EEEecCHHHHH---HHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCC
Confidence 34456677777753 233 44555554443 4445556778887777665555566666664 35677777763
No 232
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.54 E-value=11 Score=21.89 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=30.8
Q ss_pred cEEEEe-CchHHHH------HHHHHHHhcCceEEEEecCCCHHHHHHHHHHh
Q psy13287 78 QSIIFC-NSTQRVE------LLAKKITELGYCCYYIHARMAQAHRNRVFHDF 122 (140)
Q Consensus 78 ~~lIF~-~t~~~~~------~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f 122 (140)
++.||. +....|. ++.+.|...++....+.=+.+++.|.+..+.+
T Consensus 9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 9 VIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred EEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 355655 3333444 78888888888887777777777777776664
No 233
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=69.02 E-value=3.2 Score=27.91 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=46.8
Q ss_pred cCccchHHHHHHHHh-----hCCCCcEEEEeCchHHHHHHHHHHHhcCceE---EEEecCCCHHHHHHHHHHhhcCCccE
Q psy13287 58 VQERQKVHCLNTLFS-----KLQINQSIIFCNSTQRVELLAKKITELGYCC---YYIHARMAQAHRNRVFHDFRSGLCRN 129 (140)
Q Consensus 58 ~~~~~k~~~l~~ll~-----~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v---~~~h~~~~~~~R~~~~~~f~~g~~~v 129 (140)
+++....+.|.+.+. ..+..++++++. ....+.+.+.|++.|..| ..|.-...........+.+..+++++
T Consensus 110 ~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg-~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~ 188 (254)
T 4es6_A 110 PEQGDDSEALLALPAFQDSLRVHDPKVLIMRG-EGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNG 188 (254)
T ss_dssp CSSCCSHHHHHTCHHHHHHTCSSSCEEEEEEC-SSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHHTTCCE
T ss_pred CCCCCCHHHHHHhHhhcccccCCCCEEEEEcC-CccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCE
Confidence 344444566666664 334566777664 455678999999998864 33333322222234556677889999
Q ss_pred EEEec
Q psy13287 130 LVCSG 134 (140)
Q Consensus 130 lv~T~ 134 (140)
++-|+
T Consensus 189 v~ftS 193 (254)
T 4es6_A 189 LVVSS 193 (254)
T ss_dssp EECCS
T ss_pred EEEcC
Confidence 88877
No 234
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=68.33 E-value=29 Score=24.68 Aligned_cols=65 Identities=5% Similarity=0.127 Sum_probs=39.0
Q ss_pred HHHHHhhCCCCcEEEEeCch---HHHHHHHHHHHhcCceE--EEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 67 LNTLFSKLQINQSIIFCNST---QRVELLAKKITELGYCC--YYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 67 l~~ll~~~~~~~~lIF~~t~---~~~~~~~~~L~~~~~~v--~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
+.++++... ++++|.+... .-.+.+.+.|.+.++.+ ..+.|.-+.+.=.+..+.+++.+.+++|+
T Consensus 23 l~~~l~~~g-~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIa 92 (370)
T 1jq5_A 23 IANYLEGIG-NKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIG 92 (370)
T ss_dssp HHHHHTTTC-SEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHcC-CeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 444555543 5677766432 12456666776667665 45556555555566677777766777775
No 235
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=67.48 E-value=11 Score=24.83 Aligned_cols=47 Identities=6% Similarity=-0.005 Sum_probs=32.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCc--eEEEEecCCCHHHHHHHHHHhhcC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGY--CCYYIHARMAQAHRNRVFHDFRSG 125 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~--~v~~~h~~~~~~~R~~~~~~f~~g 125 (140)
++.+.|++++.+++++.-+.|.+.++ ++..+. ..+++.++.+.+..+
T Consensus 26 D~~iyVla~~qrd~~W~rQ~L~k~~~~e~~~Vi~---~~~e~~~i~~~L~~~ 74 (197)
T 3gr0_A 26 DKMLYVAAQNERDTLWARQVLARGDYDKNARVIN---ENEENKRISIWLDTY 74 (197)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHHTCTTTEEEEC---HHHHHHHHHHHHHHH
T ss_pred CCcEEEEEccccHHHHHHHHHHhcCCCCCcEEee---hHHHHHHHHHHHHhc
Confidence 55688999999999999999987753 344433 455666666665544
No 236
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=67.06 E-value=15 Score=20.96 Aligned_cols=56 Identities=7% Similarity=-0.053 Sum_probs=38.6
Q ss_pred CCcEEEEeC------chHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 76 INQSIIFCN------STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 76 ~~~~lIF~~------t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
..+++||.. +...|..+.+.|...++....+.=+.+++.+....+..-...+..++
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~if 75 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLY 75 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEE
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 456788876 45678889999999998888887777776666665544333444443
No 237
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=66.94 E-value=25 Score=25.38 Aligned_cols=59 Identities=10% Similarity=0.037 Sum_probs=37.1
Q ss_pred CCCcEE-EEeCch-------HHHHHHHHHHHhcCceEEEE---------ecCCCHHHHHH-HHHHhhcCCccEEEEec
Q psy13287 75 QINQSI-IFCNST-------QRVELLAKKITELGYCCYYI---------HARMAQAHRNR-VFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~l-IF~~t~-------~~~~~~~~~L~~~~~~v~~~---------h~~~~~~~R~~-~~~~f~~g~~~vlv~T~ 134 (140)
+++.+| |+++|. ...+...+.|++.|++|... -++ +.++|.+ ..+.|.+-+++.++|+-
T Consensus 41 k~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-td~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 41 AVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSG-TIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSS-CHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCC-CHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 344444 666652 34566677888889887543 122 3555554 45566778999999974
No 238
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=66.81 E-value=11 Score=24.00 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=30.3
Q ss_pred CCCcEEEEeCchHH--HHHHHHHHHhcCceEEEEec-CCCH
Q psy13287 75 QINQSIIFCNSTQR--VELLAKKITELGYCCYYIHA-RMAQ 112 (140)
Q Consensus 75 ~~~~~lIF~~t~~~--~~~~~~~L~~~~~~v~~~h~-~~~~ 112 (140)
+.+.+|||+++-++ +.+++..+++.|..+..+.+ ..+.
T Consensus 77 ~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs~~~~~ 117 (170)
T 3jx9_A 77 AVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITLGDVTE 117 (170)
T ss_dssp TTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEESSCCCT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeCcchhc
Confidence 45789999998443 67889999999999999999 4443
No 239
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=66.81 E-value=3.9 Score=30.23 Aligned_cols=45 Identities=11% Similarity=0.194 Sum_probs=34.9
Q ss_pred HHHHHhhCC-CCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCC
Q psy13287 67 LNTLFSKLQ-INQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMA 111 (140)
Q Consensus 67 l~~ll~~~~-~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~ 111 (140)
+.+.+..++ ..++++||.+-..+...+..|+..|+. +..+.|++.
T Consensus 417 l~~~~~~l~~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~ 463 (474)
T 3tp9_A 417 LAAHIHDVPRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYE 463 (474)
T ss_dssp HTTTGGGSCSSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHhcCCCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHH
Confidence 333444443 467999999999999999999999984 999988843
No 240
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=66.55 E-value=27 Score=23.65 Aligned_cols=50 Identities=4% Similarity=-0.058 Sum_probs=26.3
Q ss_pred EEEEeCchHHHH---HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEe
Q psy13287 79 SIIFCNSTQRVE---LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS 133 (140)
Q Consensus 79 ~lIF~~t~~~~~---~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T 133 (140)
.+++|++..+.+ .+.+.|.+.+.....+.+. .... ...+ ....+.++++.
T Consensus 45 ~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~--~~~~-~~~~--~~~~iPvV~~~ 97 (302)
T 2qh8_A 45 EFDYKTAQGNPAIAVQIARQFVGENPDVLVGIAT--PTAQ-ALVS--ATKTIPIVFTA 97 (302)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESH--HHHH-HHHH--HCSSSCEEEEE
T ss_pred EEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCh--HHHH-HHHh--cCCCcCEEEEe
Confidence 467787765544 4445555556665555553 1111 2222 24567777764
No 241
>3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp}
Probab=65.84 E-value=5.4 Score=28.64 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 111 AQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 111 ~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
++++|+.+++.+++|.++++|+||.+
T Consensus 238 ~~~dr~aL~~al~dG~id~~iaTDHa 263 (359)
T 3pnu_A 238 RYEDKEALCELAFSGYEKVMFGSDSA 263 (359)
T ss_dssp CHHHHHHHHHHHHTTCTTEEECCCBC
T ss_pred CHHHHHHHHHHHhcCCCCEEEecCCC
Confidence 36789999999999999999999865
No 242
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=65.78 E-value=16 Score=20.65 Aligned_cols=56 Identities=5% Similarity=-0.101 Sum_probs=37.4
Q ss_pred CCcEEEEe-CchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHh-hcCCccEEE
Q psy13287 76 INQSIIFC-NSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDF-RSGLCRNLV 131 (140)
Q Consensus 76 ~~~~lIF~-~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f-~~g~~~vlv 131 (140)
..++.||. +....|..+.+.|.+.++....+.-+.+++.+.+..+.. -...+..++
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~if 72 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIF 72 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEE
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEE
Confidence 44667776 668888888888888888877777776666665554443 333455443
No 243
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=65.46 E-value=7.9 Score=26.86 Aligned_cols=47 Identities=9% Similarity=0.105 Sum_probs=33.7
Q ss_pred HHHHHHHHhhC---CCCcEEEEeCch---HHHHHHHHHHHhcCce-EEEEecCC
Q psy13287 64 VHCLNTLFSKL---QINQSIIFCNST---QRVELLAKKITELGYC-CYYIHARM 110 (140)
Q Consensus 64 ~~~l~~ll~~~---~~~~~lIF~~t~---~~~~~~~~~L~~~~~~-v~~~h~~~ 110 (140)
.+.+.+.+... +..+++|||.+. ..+.+++..|+..|+. |..+.|++
T Consensus 92 ~~~~~~~~~~lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~ 145 (302)
T 3olh_A 92 AEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGL 145 (302)
T ss_dssp HHHHHHHHHHTTCCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred HHHHHHHHHHcCCCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCH
Confidence 34556666554 356788999642 3478888999999984 88999873
No 244
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=65.03 E-value=16 Score=24.45 Aligned_cols=70 Identities=14% Similarity=0.087 Sum_probs=43.7
Q ss_pred chHHHHHHHHhhCCCC-cEEEEeCchHHHHHHHHHHHhcCceEEE---EecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 62 QKVHCLNTLFSKLQIN-QSIIFCNSTQRVELLAKKITELGYCCYY---IHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 62 ~k~~~l~~ll~~~~~~-~~lIF~~t~~~~~~~~~~L~~~~~~v~~---~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...+.|.+.+.. .. ++++++ .....+.+.+.|++.|..+.. |.-......-....+.+..|++++++-|+
T Consensus 118 ~~~e~L~~~l~~--g~~~vL~~r-~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS 191 (261)
T 1wcw_A 118 GTSKSLLPLLPQ--GRGVAALQL-YGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAFVA 191 (261)
T ss_dssp SSHHHHGGGSCC--CCEEEEEEC-CSSCCHHHHHHHHHTTEEEEEECSEEEEECHHHHHHHHHHHHHTCCSEEEECS
T ss_pred ccHHHHHHHHHc--CCceEEEEc-cCcccHHHHHHHHHCCCEEEEEeeEEEecCCccHHHHHHHHHcCCCCEEEEEC
Confidence 344555555544 44 555555 445567899999999876532 22222233345566778889999988887
No 245
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=64.28 E-value=14 Score=19.43 Aligned_cols=53 Identities=8% Similarity=0.043 Sum_probs=31.8
Q ss_pred EEEEe-CchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 79 SIIFC-NSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 79 ~lIF~-~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
+.+|. +....|..+...|.+.++.+..+.-+.+++.+.+..+.+..+.+.+++
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~ 56 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIF 56 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE
T ss_pred EEEEECCCChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 44555 446677777777777777666665554444455555555455666654
No 246
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=64.15 E-value=8.9 Score=29.07 Aligned_cols=48 Identities=10% Similarity=-0.030 Sum_probs=25.4
Q ss_pred CCCcEEEEeCchHHHHHHH-HHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLA-KKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~-~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...++||.|+++.-++.+. +.++..+..+..++++. ..+..+|+|+|.
T Consensus 234 ~~~~vlil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~------------~~~~~~I~v~T~ 282 (590)
T 3h1t_A 234 RKPRILFLADRNVLVDDPKDKTFTPFGDARHKIEGGK------------VVKSREIYFAIY 282 (590)
T ss_dssp SCCCEEEEEC-----------CCTTTCSSEEECCC--------------CCSSCSEEEEEG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhcchhhhhhhccC------------CCCCCcEEEEEh
Confidence 4578999999999999998 78877776666665432 234567888875
No 247
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=64.06 E-value=4.1 Score=25.28 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=24.6
Q ss_pred EEEeC-chHHHHHHHHHHHh----------cCc-eEEEEecCCC
Q psy13287 80 IIFCN-STQRVELLAKKITE----------LGY-CCYYIHARMA 111 (140)
Q Consensus 80 lIF~~-t~~~~~~~~~~L~~----------~~~-~v~~~h~~~~ 111 (140)
++||. +-..+...+..|++ .|+ ++..+.|++.
T Consensus 93 v~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~ 136 (161)
T 1c25_A 93 VFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYK 136 (161)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHH
T ss_pred EEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHH
Confidence 46798 77777888888875 387 6999999954
No 248
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=63.98 E-value=28 Score=24.60 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCceEEEEec------C--CCHHHHHH-HHHHhhcCCccEEEEec
Q psy13287 87 QRVELLAKKITELGYCCYYIHA------R--MAQAHRNR-VFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 87 ~~~~~~~~~L~~~~~~v~~~h~------~--~~~~~R~~-~~~~f~~g~~~vlv~T~ 134 (140)
...+...+.|++.|++|...-. - =+.++|.+ ..+.|.+-+++.++|+-
T Consensus 30 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 30 ENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp HHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred HHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 4556667788888888754321 1 13555554 45566778999999864
No 249
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=63.34 E-value=20 Score=20.85 Aligned_cols=76 Identities=9% Similarity=-0.001 Sum_probs=47.0
Q ss_pred EEEcC-ccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc----CCccE
Q psy13287 55 YAFVQ-ERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS----GLCRN 129 (140)
Q Consensus 55 ~~~~~-~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~----g~~~v 129 (140)
++.++ +..-...+..++.... .. +..+.+..+ ..+.+++....+..+.-.++...-...++.++. ..+.+
T Consensus 10 iLivdd~~~~~~~l~~~L~~~g-~~-v~~~~~~~~---a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pi 84 (142)
T 3cg4_A 10 VMIVDDDAHVRIAVKTILSDAG-FH-IISADSGGQ---CIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAI 84 (142)
T ss_dssp EEEECSCHHHHHHHHHHHHHTT-CE-EEEESSHHH---HHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHCC-eE-EEEeCCHHH---HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCE
Confidence 33444 3345667777777652 33 445555444 444556667788888877766555667777765 35778
Q ss_pred EEEecc
Q psy13287 130 LVCSGD 135 (140)
Q Consensus 130 lv~T~~ 135 (140)
++.|+.
T Consensus 85 i~~s~~ 90 (142)
T 3cg4_A 85 VMLTAK 90 (142)
T ss_dssp EEEECT
T ss_pred EEEECC
Confidence 887764
No 250
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=63.21 E-value=31 Score=23.09 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=43.5
Q ss_pred HHHHHhhCCCCcEEE-EeCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhh--cCCccEEEEec
Q psy13287 67 LNTLFSKLQINQSII-FCNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 67 l~~ll~~~~~~~~lI-F~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~--~g~~~vlv~T~ 134 (140)
+.+.+.+. ..++++ ..++.+..+.+.+.+...+.++..+..++...+ -...++... .|.+++||..-
T Consensus 34 ia~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA 104 (270)
T 3is3_A 34 VAVHLGRL-GAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNS 104 (270)
T ss_dssp HHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred HHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 34433332 334444 456677888899999888888999999986543 334444443 27899998653
No 251
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=63.09 E-value=30 Score=24.36 Aligned_cols=47 Identities=13% Similarity=0.320 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCceEEEEe---------cCCCHHHHH-HHHHHhhcCCccEEEEec
Q psy13287 87 QRVELLAKKITELGYCCYYIH---------ARMAQAHRN-RVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 87 ~~~~~~~~~L~~~~~~v~~~h---------~~~~~~~R~-~~~~~f~~g~~~vlv~T~ 134 (140)
...+...+.|++.|++|..-- ++ +.++|. ...+.|.+-+++.++|+-
T Consensus 30 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-td~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 30 NQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSS-SIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp HHHHHHHHHHHHTTCEEEECTTTTCCCTTSSC-CHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred HHHHHHHHHHHhCCCEEEECcchhhccCcccC-CHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 345666778888888764421 12 355555 455567888999999863
No 252
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=63.06 E-value=15 Score=27.32 Aligned_cols=51 Identities=12% Similarity=0.017 Sum_probs=31.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcC----ceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELG----YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~----~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++||.++++.-++.+++.+++.+ ..+....++.... -.....+|+|+|.
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Ivv~T~ 243 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK--------GAKIDAQIVIGTP 243 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEEECH
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc--------cccCCCCEEEECH
Confidence 4579999999999999999998752 3333333332211 1123678999985
No 253
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=63.04 E-value=14 Score=25.22 Aligned_cols=76 Identities=9% Similarity=0.113 Sum_probs=45.4
Q ss_pred cCccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCceE---EEEecCCCHHHHHHHHHHhhc-CCccEEE
Q psy13287 58 VQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCC---YYIHARMAQAHRNRVFHDFRS-GLCRNLV 131 (140)
Q Consensus 58 ~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~~~~v---~~~h~~~~~~~R~~~~~~f~~-g~~~vlv 131 (140)
++.....+.|.+.+... +..++|+++. ....+.+.+.|++.|..| ..|.-......-..+.+.++. |.+++++
T Consensus 137 ~p~~~~ae~L~~~l~~~~~~g~~vLi~rg-~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ 215 (286)
T 1jr2_A 137 GETCGNAEKLAEYICSRESSALPLLFPCG-NLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASIT 215 (286)
T ss_dssp CCSCSSHHHHHHHHHTSCCCSSCEEEEES-CGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEE
T ss_pred CCCccCHHHHHHHHHhcccCCCeEEEECC-hhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEE
Confidence 34445566677766543 3456777664 445678999999998754 333222222222334455655 8889888
Q ss_pred Eec
Q psy13287 132 CSG 134 (140)
Q Consensus 132 ~T~ 134 (140)
-|+
T Consensus 216 ftS 218 (286)
T 1jr2_A 216 FFS 218 (286)
T ss_dssp ESS
T ss_pred EEC
Confidence 776
No 254
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=63.03 E-value=18 Score=20.46 Aligned_cols=64 Identities=16% Similarity=0.064 Sum_probs=41.9
Q ss_pred CcccCCCeEEEEEEcCccchHHHHHHHHhhC---CC-CcEEEEeCch------HHHHHHHHHHHhcCceEEEEe
Q psy13287 44 EELTLKGVTQYYAFVQERQKVHCLNTLFSKL---QI-NQSIIFCNST------QRVELLAKKITELGYCCYYIH 107 (140)
Q Consensus 44 ~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~---~~-~~~lIF~~t~------~~~~~~~~~L~~~~~~v~~~h 107 (140)
+....|.+......++.+..+..+...|++. ++ ...-+|+|+. ..+..+++..+..|.=...|.
T Consensus 12 ~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys 85 (91)
T 4gdk_A 12 AVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYC 85 (91)
T ss_dssp ECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEE
T ss_pred ecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEe
Confidence 4345566777777788888898888888654 33 4566998762 456777777764454344443
No 255
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A
Probab=62.36 E-value=6.2 Score=25.86 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=25.9
Q ss_pred CCcE--EEEeC-chHHHHHHHHHHHh----------cCc-eEEEEecCC
Q psy13287 76 INQS--IIFCN-STQRVELLAKKITE----------LGY-CCYYIHARM 110 (140)
Q Consensus 76 ~~~~--lIF~~-t~~~~~~~~~~L~~----------~~~-~v~~~h~~~ 110 (140)
..++ ++||. +-..+...+..|++ .|+ +|..+.|++
T Consensus 109 d~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~ 157 (211)
T 1qb0_A 109 DKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGY 157 (211)
T ss_dssp TSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHH
T ss_pred CCCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHH
Confidence 3455 67898 77777778888875 587 688999983
No 256
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=62.11 E-value=31 Score=23.87 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=39.6
Q ss_pred HHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCCHHHHHHHHHHhhcCCcc
Q psy13287 67 LNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQAHRNRVFHDFRSGLCR 128 (140)
Q Consensus 67 l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~~~~R~~~~~~f~~g~~~ 128 (140)
+.++..+.+.+-++||++.. .+..+.++.-+.|++ +..+..+++.++..++.+.-++..++
T Consensus 62 l~el~~~~~~Dv~ii~vp~~-~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~ 123 (294)
T 2yv1_A 62 VKEAVKETDANASVIFVPAP-FAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVK 123 (294)
T ss_dssp HHHHHHHHCCCEEEECCCHH-HHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred HHHHhhcCCCCEEEEccCHH-HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 33444433456677787754 555555666667888 66778899887777777766654443
No 257
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=61.77 E-value=27 Score=21.99 Aligned_cols=52 Identities=6% Similarity=0.027 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCceEEEEec-CCCHHH-HHHHHHHhhcCCccEEEEecccCC
Q psy13287 87 QRVELLAKKITELGYCCYYIHA-RMAQAH-RNRVFHDFRSGLCRNLVCSGDSSA 138 (140)
Q Consensus 87 ~~~~~~~~~L~~~~~~v~~~h~-~~~~~~-R~~~~~~f~~g~~~vlv~T~~~~r 138 (140)
.....+++.|++.|+.+..+.- .-+.+. +..+.+....++.+++|+|--.+-
T Consensus 40 ~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 40 ESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred chHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 3456788999999988743332 112222 333333334567899999874443
No 258
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=61.50 E-value=30 Score=24.61 Aligned_cols=64 Identities=8% Similarity=0.049 Sum_probs=44.6
Q ss_pred HHHHHHHhhC-CCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCCHHHHHHHHHHhhcCCcc
Q psy13287 65 HCLNTLFSKL-QINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQAHRNRVFHDFRSGLCR 128 (140)
Q Consensus 65 ~~l~~ll~~~-~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~~~~R~~~~~~f~~g~~~ 128 (140)
..+.++.... +.+-.+||++-....+.+.+.+.+.|++ +..+..+++.....++.+.-+...++
T Consensus 68 ~sv~ea~~~~p~~DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~r 133 (334)
T 3mwd_B 68 KNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVT 133 (334)
T ss_dssp SSHHHHHHHCTTCCEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred CCHHHHhhcCCCCcEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 3455555554 2466889998877778888999878886 55569999987666666665554443
No 259
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=61.35 E-value=20 Score=20.34 Aligned_cols=77 Identities=13% Similarity=0.224 Sum_probs=48.1
Q ss_pred EEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc----CCccE
Q psy13287 55 YAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS----GLCRN 129 (140)
Q Consensus 55 ~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~----g~~~v 129 (140)
++.+++ ..-...+..++..... -+..+.+..+ ..+.+.+..+.+..+--.++...-...++.++. ..+.+
T Consensus 6 ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~---a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 6 ALIVEDYQAAAETFKELLEMLGF--QADYVMSGTD---ALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTE--EEEEESSHHH---HHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred EEEEcCCHHHHHHHHHHHHHcCC--CEEEECCHHH---HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 344444 3446677777776422 3444554444 445566677888888877776666777777774 35788
Q ss_pred EEEeccc
Q psy13287 130 LVCSGDS 136 (140)
Q Consensus 130 lv~T~~~ 136 (140)
++.|+-.
T Consensus 81 i~~s~~~ 87 (127)
T 3i42_A 81 VAVSGFA 87 (127)
T ss_dssp EEEECC-
T ss_pred EEEECCc
Confidence 8887643
No 260
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=60.68 E-value=23 Score=25.17 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=41.7
Q ss_pred CCcEEEE---eCchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 76 INQSIIF---CNSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 76 ~~~~lIF---~~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
.+.+||. +.|-.+....++.|++.|. .+.+.||=++... .+++.+..++-+|+||..
T Consensus 213 gk~viIVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~tH~v~~~~a----~e~l~~~~i~~vv~t~ti 275 (326)
T 3s5j_B 213 DRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPA----ISRINNACFEAVVVTNTI 275 (326)
T ss_dssp TSEEEEEEEEESSCHHHHHHHHHHHHTTCSEEEEEEEEECCCTTH----HHHHHHSCCSEEEEETTS
T ss_pred CCEEEEEccccCCcHHHHHHHHHHHHcCCCEEEEEEEecccCchH----HHHHhhCCCCEEEEecCC
Confidence 3445543 4788899999999998865 4778888777643 455555779999999854
No 261
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=60.66 E-value=33 Score=22.66 Aligned_cols=37 Identities=8% Similarity=0.075 Sum_probs=18.4
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
...+.+...++.-..+.+... ...++.+.+..+.+++
T Consensus 54 ~~~~~l~~~~vdgiIi~~~~~----~~~~~~l~~~~iPvV~ 90 (276)
T 3jy6_A 54 TLLRAIGSRGFDGLILQSFSN----PQTVQEILHQQMPVVS 90 (276)
T ss_dssp HHHHHHHTTTCSEEEEESSCC----HHHHHHHHTTSSCEEE
T ss_pred HHHHHHHhCCCCEEEEecCCc----HHHHHHHHHCCCCEEE
Confidence 334444445555555554433 3445556555555543
No 262
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=60.59 E-value=23 Score=20.84 Aligned_cols=56 Identities=7% Similarity=-0.081 Sum_probs=38.0
Q ss_pred CCCcEEEEeC------chHHHHHHHHHHHhcCce---EEEEecCCCHHHHHHHHHHhhcCCccEE
Q psy13287 75 QINQSIIFCN------STQRVELLAKKITELGYC---CYYIHARMAQAHRNRVFHDFRSGLCRNL 130 (140)
Q Consensus 75 ~~~~~lIF~~------t~~~~~~~~~~L~~~~~~---v~~~h~~~~~~~R~~~~~~f~~g~~~vl 130 (140)
...+++||.. ...-|..+.+.|++.|+. +..+.-..+.+.|....+..-...+..+
T Consensus 14 ~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~v 78 (121)
T 3gx8_A 14 ESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQL 78 (121)
T ss_dssp HSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEE
T ss_pred ccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeE
Confidence 3577999987 478899999999998887 6666656666666665544322334433
No 263
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=60.54 E-value=33 Score=22.61 Aligned_cols=16 Identities=6% Similarity=-0.110 Sum_probs=6.7
Q ss_pred HHHHHhcCceEEEEec
Q psy13287 93 AKKITELGYCCYYIHA 108 (140)
Q Consensus 93 ~~~L~~~~~~v~~~h~ 108 (140)
.+.+...++.-..+.+
T Consensus 57 ~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 57 LATFVSHNCTGMISTA 72 (277)
T ss_dssp HHHHHHTTCSEEEECG
T ss_pred HHHHHhCCCCEEEEec
Confidence 3333344444444444
No 264
>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}
Probab=60.50 E-value=35 Score=22.80 Aligned_cols=57 Identities=11% Similarity=0.084 Sum_probs=36.1
Q ss_pred HHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHh
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDF 122 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f 122 (140)
.+...++.+..+.+...+++.- ..+++.+.+.+.+..+..+||+-+++.-..+-+.|
T Consensus 58 ~~~A~~i~~~~~~~~~~v~v~v--~~~ei~~~i~~~~ld~vQLHG~E~~~~~~~l~~~~ 114 (228)
T 4aaj_A 58 LEKAREIIENSAIPVFLVSTMV--GFSEWAMAIERTGAQYIQVHSNALPQTIDTLKKEF 114 (228)
T ss_dssp HHHHHHHHHHCSSCEEEEECCC--CHHHHHHHHHHHTCSEEEECSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCEEEeccC--chHHHHHHHHhccchheecccccCHHHHHHHhhcc
Confidence 4445556655555544444322 14566777777899999999999887655554444
No 265
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=60.46 E-value=21 Score=20.33 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=43.1
Q ss_pred EEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccEEE
Q psy13287 55 YAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLV 131 (140)
Q Consensus 55 ~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vlv 131 (140)
+..+++ ..-...+..++... ... ++.+.+..+ ..+.+.+..+.+..+--.++...-...++.++. ..+.+++
T Consensus 10 ilivdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~---a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (130)
T 3eod_A 10 ILIVEDEQVFRSLLDSWFSSL-GAT-TVLAADGVD---ALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLV 84 (130)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-TCE-EEEESCHHH---HHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHhC-Cce-EEEeCCHHH---HHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 344443 34456677777764 233 334544443 444556667788888777776666677777764 3578888
Q ss_pred Eecc
Q psy13287 132 CSGD 135 (140)
Q Consensus 132 ~T~~ 135 (140)
.|+.
T Consensus 85 ~t~~ 88 (130)
T 3eod_A 85 ISAT 88 (130)
T ss_dssp EECC
T ss_pred EEcC
Confidence 7763
No 266
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=60.45 E-value=22 Score=20.61 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=45.8
Q ss_pred EEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccEEEE
Q psy13287 56 AFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLVC 132 (140)
Q Consensus 56 ~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vlv~ 132 (140)
+.+++ ..-...+...+... ... ++.+.+..+ ..+.+.+..+.+..+.- ++...-...++.++. ..+.+++.
T Consensus 8 Livdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~---a~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~l 81 (142)
T 2qxy_A 8 MVVDESRITFLAVKNALEKD-GFN-VIWAKNEQE---AFTFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVL 81 (142)
T ss_dssp EEECSCHHHHHHHHHHHGGG-TCE-EEEESSHHH---HHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHH---HHHHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEE
Confidence 33443 34456677777763 333 335555444 44556666778888887 777666777777764 35788887
Q ss_pred ecc
Q psy13287 133 SGD 135 (140)
Q Consensus 133 T~~ 135 (140)
|+.
T Consensus 82 s~~ 84 (142)
T 2qxy_A 82 SAY 84 (142)
T ss_dssp ESC
T ss_pred ECC
Confidence 763
No 267
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=59.75 E-value=34 Score=22.43 Aligned_cols=15 Identities=0% Similarity=0.053 Sum_probs=6.1
Q ss_pred HHHHhcCceEEEEec
Q psy13287 94 KKITELGYCCYYIHA 108 (140)
Q Consensus 94 ~~L~~~~~~v~~~h~ 108 (140)
+.+...++.-..+.+
T Consensus 52 ~~l~~~~vdgiIi~~ 66 (272)
T 3o74_A 52 QLFRARRCDALFVAS 66 (272)
T ss_dssp HHHHHTTCSEEEECC
T ss_pred HHHHHcCCCEEEEec
Confidence 333344444333433
No 268
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=59.58 E-value=21 Score=24.40 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=37.3
Q ss_pred cEEEEeCchHHHHHHHHHHHhcCceEEE---EecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 78 QSIIFCNSTQRVELLAKKITELGYCCYY---IHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L~~~~~~v~~---~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
++++++ .....+.+.+.|++.|..|.. |.-......-....+.+..|++++++-|+
T Consensus 158 ~vLi~r-~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~FtS 216 (286)
T 3d8t_A 158 VAALQL-YGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAVLRGEVDALAFVA 216 (286)
T ss_dssp EEEEEC-SSSCCHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHHHTTCCSEEEESS
T ss_pred eEEEEc-cCcccHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHHHcCCCCEEEEEC
Confidence 555555 445567799999999886532 22222333345667788889999998887
No 269
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=59.37 E-value=34 Score=22.74 Aligned_cols=37 Identities=3% Similarity=-0.153 Sum_probs=16.4
Q ss_pred HHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 94 KKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 94 ~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
+.+...++.-..+.+. +...-...++.+.+..+.+++
T Consensus 55 ~~l~~~~vdgiIi~~~-~~~~~~~~~~~~~~~~iPvV~ 91 (291)
T 3l49_A 55 QTLIAQKPDAIIEQLG-NLDVLNPWLQKINDAGIPLFT 91 (291)
T ss_dssp HHHHHHCCSEEEEESS-CHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHcCCCEEEEeCC-ChhhhHHHHHHHHHCCCcEEE
Confidence 3333445554444433 222233445555555555443
No 270
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=59.36 E-value=32 Score=24.28 Aligned_cols=58 Identities=14% Similarity=0.187 Sum_probs=42.9
Q ss_pred CCCcEEEE---eCchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 75 QINQSIIF---CNSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 75 ~~~~~lIF---~~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
+.+.+||. +.|-.+....++.|++.|. .+.+.||=.+... .+++.+..++-+|+||..
T Consensus 215 ~gk~viiVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~tH~v~s~~a----~~~l~~~~i~~vv~t~ti 278 (319)
T 3dah_A 215 EGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGA----ADRIAASALDELVVTDTI 278 (319)
T ss_dssp CCSEEEEEEEEESSCHHHHHHHHHHHHTTCSCEEEEEEEECCCTTH----HHHHHTSSCSEEEEESSS
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEEEeecCChHH----HHHHHhCCCCEEEEeccc
Confidence 44455553 4788899999999998854 5788888776543 555666779999999964
No 271
>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A*
Probab=58.92 E-value=8.6 Score=27.19 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 112 QAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 112 ~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
+++|..+++.+++|.++++|+||.+
T Consensus 228 ~~d~~aL~~~l~~G~id~~i~SDha 252 (347)
T 2z26_A 228 NIHQQALRELVASGFNRVFLGTDSA 252 (347)
T ss_dssp HHHHHHHHHHHHTTCTTEEECCCBC
T ss_pred HHHHHHHHHHHhcCCCCeEEecCCC
Confidence 5689999999999999999999974
No 272
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=58.75 E-value=38 Score=22.83 Aligned_cols=17 Identities=12% Similarity=0.090 Sum_probs=7.4
Q ss_pred HHHHHHhcCceEEEEec
Q psy13287 92 LAKKITELGYCCYYIHA 108 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~ 108 (140)
+.+.|...++.-..+.+
T Consensus 63 ~~~~l~~~~vdgiI~~~ 79 (303)
T 3kke_A 63 LSRLVSEGRVDGVLLQR 79 (303)
T ss_dssp HHHHHHSCSSSEEEECC
T ss_pred HHHHHHhCCCcEEEEec
Confidence 33444444554444433
No 273
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=58.73 E-value=24 Score=20.41 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=48.2
Q ss_pred EEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc----CCccE
Q psy13287 55 YAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS----GLCRN 129 (140)
Q Consensus 55 ~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~----g~~~v 129 (140)
++.+++ ..-...+..++.... .. +..+.+..+ ..+.+....+.+..+--.++...-...++.++. ..+.+
T Consensus 9 iLivdd~~~~~~~l~~~l~~~g-~~-v~~~~~~~~---a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~i 83 (140)
T 3grc_A 9 ILICEDDPDIARLLNLMLEKGG-FD-SDMVHSAAQ---ALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAI 83 (140)
T ss_dssp EEEECSCHHHHHHHHHHHHHTT-CE-EEEECSHHH---HHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEE
T ss_pred EEEEcCCHHHHHHHHHHHHHCC-Ce-EEEECCHHH---HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCE
Confidence 344443 345667777777632 33 445555444 444556677888888877777667777877775 36788
Q ss_pred EEEec
Q psy13287 130 LVCSG 134 (140)
Q Consensus 130 lv~T~ 134 (140)
++.|+
T Consensus 84 i~~s~ 88 (140)
T 3grc_A 84 VVVSA 88 (140)
T ss_dssp EEECT
T ss_pred EEEec
Confidence 88876
No 274
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=58.54 E-value=47 Score=23.71 Aligned_cols=69 Identities=9% Similarity=0.116 Sum_probs=47.0
Q ss_pred hHHHHHHHHhhCCCCcEEEEeCc--hH---HHHHHHHHHHhcCceEEEEe---cCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 63 KVHCLNTLFSKLQINQSIIFCNS--TQ---RVELLAKKITELGYCCYYIH---ARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 63 k~~~l~~ll~~~~~~~~lIF~~t--~~---~~~~~~~~L~~~~~~v~~~h---~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
-.+.+.++++... ++++|.+.. .. -.+++.+.|.+.|+.+..+. +.-+.+.=.+..+.+++.+.+++|+
T Consensus 28 ~~~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIa 104 (371)
T 1o2d_A 28 ILEKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVG 104 (371)
T ss_dssp HHHHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEE
T ss_pred HHHHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 3455666666654 677777743 23 36888888888888776655 3345666777888888888888886
No 275
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=58.43 E-value=27 Score=20.81 Aligned_cols=75 Identities=5% Similarity=-0.007 Sum_probs=47.4
Q ss_pred EEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc----CCccE
Q psy13287 55 YAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS----GLCRN 129 (140)
Q Consensus 55 ~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~----g~~~v 129 (140)
++.+++ ..-...+..++.... .. +..+.+..+ ..+.+.+..+.+..+--.++...-...++.++. ..+.+
T Consensus 10 ILivdd~~~~~~~l~~~L~~~g-~~-v~~~~~~~~---al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (154)
T 3gt7_A 10 ILIVEDSPTQAEHLKHILEETG-YQ-TEHVRNGRE---AVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPV 84 (154)
T ss_dssp EEEECSCHHHHHHHHHHHHTTT-CE-EEEESSHHH---HHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred EEEEeCCHHHHHHHHHHHHHCC-CE-EEEeCCHHH---HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCE
Confidence 444444 345667777777642 33 344444443 445556667888888887777667777777775 35778
Q ss_pred EEEec
Q psy13287 130 LVCSG 134 (140)
Q Consensus 130 lv~T~ 134 (140)
++.|+
T Consensus 85 i~~s~ 89 (154)
T 3gt7_A 85 ILLTI 89 (154)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88875
No 276
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=58.30 E-value=43 Score=23.19 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=39.3
Q ss_pred HHHHHhhCC-CCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCCHHHHHHHHHHhhcCCcc
Q psy13287 67 LNTLFSKLQ-INQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQAHRNRVFHDFRSGLCR 128 (140)
Q Consensus 67 l~~ll~~~~-~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~~~~R~~~~~~f~~g~~~ 128 (140)
+.++..+.+ .+-++||++. +.+..+.++.-+.|++ +..+..+++.++..++.+.-++..++
T Consensus 62 l~el~~~~~~~DvaIi~vp~-~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~ 124 (297)
T 2yv2_A 62 VKEALAEHPEINTSIVFVPA-PFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGAT 124 (297)
T ss_dssp HHHHHHHCTTCCEEEECCCG-GGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred HHHHhhcCCCCCEEEEecCH-HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 344444333 5557778776 4555555666667888 67778899887777777766654444
No 277
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=58.29 E-value=24 Score=20.30 Aligned_cols=75 Identities=9% Similarity=0.112 Sum_probs=43.8
Q ss_pred EEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCC-----HHHHHHHHHHhhc--CCc
Q psy13287 56 AFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA-----QAHRNRVFHDFRS--GLC 127 (140)
Q Consensus 56 ~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~-----~~~R~~~~~~f~~--g~~ 127 (140)
+.+++ ..-...+...+... ... +..+.+..+ ..+.+.+....+..+--.++ ...-...++.++. ..+
T Consensus 7 livdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~---a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~ 81 (140)
T 2qr3_A 7 IIVDDNKGVLTAVQLLLKNH-FSK-VITLSSPVS---LSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDL 81 (140)
T ss_dssp EEECSCHHHHHHHHHHHTTT-SSE-EEEECCHHH---HHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTC
T ss_pred EEEeCCHHHHHHHHHHHHhC-CcE-EEEeCCHHH---HHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCC
Confidence 33443 34456677777664 233 345555444 44555666788888887766 4445556666654 467
Q ss_pred cEEEEecc
Q psy13287 128 RNLVCSGD 135 (140)
Q Consensus 128 ~vlv~T~~ 135 (140)
.+++.|+.
T Consensus 82 ~ii~ls~~ 89 (140)
T 2qr3_A 82 PVVLFTAY 89 (140)
T ss_dssp CEEEEEEG
T ss_pred CEEEEECC
Confidence 88887763
No 278
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=58.23 E-value=23 Score=20.07 Aligned_cols=63 Identities=6% Similarity=0.013 Sum_probs=38.1
Q ss_pred CcccCCCeEEEEEEcCccchHHHHHHHHhhC-CCCcEEEEeCch------HHHHHHHHHHHhcCceEEEE
Q psy13287 44 EELTLKGVTQYYAFVQERQKVHCLNTLFSKL-QINQSIIFCNST------QRVELLAKKITELGYCCYYI 106 (140)
Q Consensus 44 ~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~------~~~~~~~~~L~~~~~~v~~~ 106 (140)
+....|.+......++.+..+..+...|++. +-...-+|+|+. ..+..+++..+..|.=...|
T Consensus 15 ~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Y 84 (91)
T 3w1s_C 15 PIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKMDHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSY 84 (91)
T ss_dssp ECCC-------EEEEETTSBHHHHHHHHHHHHTCSCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEE
T ss_pred ecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCCceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEE
Confidence 4455677788777888889999988888654 446677998763 45677777776544333333
No 279
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=58.22 E-value=26 Score=20.68 Aligned_cols=71 Identities=10% Similarity=0.186 Sum_probs=48.3
Q ss_pred HHHHHHHHhhCCCCcEEEEeCc--hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNS--TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t--~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+-+.++-..++.-.+++.+.| ++-....-+.-+..|..+..++..-+.+.|.+.-+.|+...+++--.+|
T Consensus 65 renireiwerypqldvvvivttddkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgvdvrtvsd 137 (162)
T 2l82_A 65 RENIREIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTVSD 137 (162)
T ss_dssp HHHHHHHHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSCEEEEESS
T ss_pred HHHHHHHHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCceeeecCC
Confidence 3446666677666555544433 3334444444556699999999999999999999999987777654443
No 280
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=58.21 E-value=40 Score=22.77 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=5.8
Q ss_pred HHHHhhcCCccEE
Q psy13287 118 VFHDFRSGLCRNL 130 (140)
Q Consensus 118 ~~~~f~~g~~~vl 130 (140)
.++.+++..+.++
T Consensus 75 ~~~~~~~~~iPvV 87 (313)
T 3m9w_A 75 VVKEAKQEGIKVL 87 (313)
T ss_dssp HHHHHHTTTCEEE
T ss_pred HHHHHHHCCCeEE
Confidence 3444444444443
No 281
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=57.97 E-value=38 Score=22.46 Aligned_cols=45 Identities=11% Similarity=0.210 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCce-EEEEecCCCHHHHHHHHHHhhcCCccEEEEe
Q psy13287 89 VELLAKKITELGYC-CYYIHARMAQAHRNRVFHDFRSGLCRNLVCS 133 (140)
Q Consensus 89 ~~~~~~~L~~~~~~-v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T 133 (140)
...+.+.+++.|+. +..+..+-+.+.....++.+...+++.+|..
T Consensus 29 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 74 (277)
T 3hs3_A 29 IDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITS 74 (277)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEc
Confidence 34455566667888 7777777777777777888888788776654
No 282
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=57.37 E-value=54 Score=24.25 Aligned_cols=68 Identities=3% Similarity=0.077 Sum_probs=44.8
Q ss_pred HHHHHHHHhhCCCCcEEEEeCch---HHHHHHHHHHHhcCceE--EEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNST---QRVELLAKKITELGYCC--YYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t~---~~~~~~~~~L~~~~~~v--~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
...+.+.++.....+++|.+... ...+.+.+.|.+.|+.+ ..+.|.-+.+.=.+..+.+++ +.+++|+
T Consensus 79 l~~l~~~l~~~g~~rvlIVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIA 151 (450)
T 1ta9_A 79 FTRSYMYVKKWATKSAVVLADQNVWNICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIG 151 (450)
T ss_dssp GGGHHHHHTTTCSSEEEEEEEHHHHHHTHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEEECccHHHHHHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEE
Confidence 44455666655433777777432 23567777888888776 566776666666667777777 7888875
No 283
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=57.19 E-value=40 Score=22.41 Aligned_cols=40 Identities=0% Similarity=-0.116 Sum_probs=16.7
Q ss_pred HHHHHHhcCceEEEEecCCCH--HHHHHHHHHhhcCCccEEE
Q psy13287 92 LAKKITELGYCCYYIHARMAQ--AHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~~~~--~~R~~~~~~f~~g~~~vlv 131 (140)
..+.|...++.-..+.+..+. ......++.++...+.+++
T Consensus 63 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~ 104 (298)
T 3tb6_A 63 GLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAM 104 (298)
T ss_dssp HHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEE
Confidence 334444445554444443211 1112344555555555544
No 284
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=56.98 E-value=34 Score=23.27 Aligned_cols=11 Identities=0% Similarity=-0.167 Sum_probs=4.5
Q ss_pred HHHhhcCCccE
Q psy13287 119 FHDFRSGLCRN 129 (140)
Q Consensus 119 ~~~f~~g~~~v 129 (140)
++.+....+.+
T Consensus 77 ~~~~~~~giPv 87 (330)
T 3uug_A 77 LKQAGEQGIKV 87 (330)
T ss_dssp HHHHHHTTCEE
T ss_pred HHHHHHCCCCE
Confidence 33444334443
No 285
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=56.72 E-value=28 Score=20.58 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=48.0
Q ss_pred EEEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccEE
Q psy13287 54 YYAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNL 130 (140)
Q Consensus 54 ~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vl 130 (140)
.++.+++ ..-...+..++.... . .+..+.+..++. +.+.+..+.+..+--.++...-...++.++. ..+.++
T Consensus 16 ~ILivdd~~~~~~~l~~~L~~~g-~-~v~~~~~~~~a~---~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 90 (153)
T 3hv2_A 16 EILLVDSQEVILQRLQQLLSPLP-Y-TLHFARDATQAL---QLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRI 90 (153)
T ss_dssp EEEEECSCHHHHHHHHHHHTTSS-C-EEEEESSHHHHH---HHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred eEEEECCCHHHHHHHHHHhcccC-c-EEEEECCHHHHH---HHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEE
Confidence 3444544 445667777777642 2 344555555544 4455667888888877776666666766664 467888
Q ss_pred EEecc
Q psy13287 131 VCSGD 135 (140)
Q Consensus 131 v~T~~ 135 (140)
+.|+.
T Consensus 91 ~~s~~ 95 (153)
T 3hv2_A 91 LLTGD 95 (153)
T ss_dssp EECCC
T ss_pred EEECC
Confidence 88763
No 286
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=56.64 E-value=47 Score=23.05 Aligned_cols=41 Identities=7% Similarity=0.031 Sum_probs=19.7
Q ss_pred HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 92 LAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
+.+.+.+.|+.+...+.+.+.+.....++.+....++.+|.
T Consensus 92 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~ 132 (355)
T 3e3m_A 92 LTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVL 132 (355)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEE
T ss_pred HHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEE
Confidence 33344444555555554444444444555555555554443
No 287
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=56.63 E-value=22 Score=19.25 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=33.9
Q ss_pred cEEEEe-CchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 78 QSIIFC-NSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 78 ~~lIF~-~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
++++|. +....|..+...|.+.++.+..+.-+.++..+.+..+.+..+.+.+++
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~ 61 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIF 61 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHTSSCCCEEE
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 355665 456777788888877777766666655555555555555445566543
No 288
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=56.61 E-value=41 Score=22.36 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=40.4
Q ss_pred CcEEE-EeCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhh--cCCccEEEEec
Q psy13287 77 NQSII-FCNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lI-F~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~--~g~~~vlv~T~ 134 (140)
.++++ +..+....+.+.+.+...+.++..+.+++...+ -...++... .|.+++||..-
T Consensus 29 ~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 90 (258)
T 3oid_A 29 YNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNA 90 (258)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 34444 467777888888888888888889999986543 344444443 27899998754
No 289
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=56.57 E-value=52 Score=23.62 Aligned_cols=71 Identities=6% Similarity=0.001 Sum_probs=47.4
Q ss_pred chHHHHHHHHhhCCCCcEEEEeCch-H---HHHHHHHHHHhcCceEEEEec---CCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 62 QKVHCLNTLFSKLQINQSIIFCNST-Q---RVELLAKKITELGYCCYYIHA---RMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 62 ~k~~~l~~ll~~~~~~~~lIF~~t~-~---~~~~~~~~L~~~~~~v~~~h~---~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
.....+.++++....++++|.+... . -.+++.+.|++.|+.+..+.+ .-+.+.=.+..+.+++.+++++|+
T Consensus 17 g~~~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 94 (383)
T 3ox4_A 17 GSLEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVIS 94 (383)
T ss_dssp THHHHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEE
Confidence 3456667777776656777777432 1 256777888888887766543 345566667777788777888876
No 290
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=56.49 E-value=38 Score=22.02 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=19.5
Q ss_pred HHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 93 AKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 93 ~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
.+.+.+.|+.+..+..+-+.+.....++.+...+++.+|.
T Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~ 64 (255)
T 1byk_A 25 LPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVL 64 (255)
T ss_dssp HHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEE
Confidence 3344444555555544444444444555555555554443
No 291
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=56.24 E-value=29 Score=20.53 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=45.2
Q ss_pred EEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccEEE
Q psy13287 55 YAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLV 131 (140)
Q Consensus 55 ~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vlv 131 (140)
++.+++ ..-...+...+... ... ++.+.+..+ ..+.+....+.+..+--.++...-...++.++. ..+.+++
T Consensus 10 iLivdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~---a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (154)
T 2rjn_A 10 VMLVDDEQPILNSLKRLIKRL-GCN-IITFTSPLD---ALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVV 84 (154)
T ss_dssp EEEECSCHHHHHHHHHHHHTT-TCE-EEEESCHHH---HHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHc-CCe-EEEeCCHHH---HHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEE
Confidence 344443 34456677777763 233 445555544 344555567788888777765555566666654 3678888
Q ss_pred Eecc
Q psy13287 132 CSGD 135 (140)
Q Consensus 132 ~T~~ 135 (140)
.|+.
T Consensus 85 ls~~ 88 (154)
T 2rjn_A 85 ISGY 88 (154)
T ss_dssp EECG
T ss_pred EecC
Confidence 8764
No 292
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=56.02 E-value=29 Score=20.53 Aligned_cols=70 Identities=9% Similarity=-0.023 Sum_probs=41.2
Q ss_pred cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccEEEEecc
Q psy13287 61 RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLVCSGD 135 (140)
Q Consensus 61 ~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vlv~T~~ 135 (140)
..-...+...+... ... +..+.+..+ ..+.+....+.+..+--.++...-...++.++. ..+.+++.|+.
T Consensus 13 ~~~~~~l~~~L~~~-g~~-v~~~~~~~~---a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~ 84 (155)
T 1qkk_A 13 RDLRKAMQQTLELA-GFT-VSSFASATE---ALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGH 84 (155)
T ss_dssp HHHHHHHHHHHHHT-TCE-EEEESCHHH---HHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECG
T ss_pred HHHHHHHHHHHHHc-CcE-EEEECCHHH---HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECC
Confidence 34456677777663 333 345555444 334455556778887776665444556666653 36788888763
No 293
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=55.87 E-value=44 Score=22.52 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=43.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhh--cCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~--~g~~~vlv~T~ 134 (140)
..++++...+.+..+.+.+.+...+.++..+..++...+ -...++.+. .|.+++||..-
T Consensus 56 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnnA 117 (276)
T 3r1i_A 56 GAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNA 117 (276)
T ss_dssp TCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 456777777788888899999888878888999986543 444455443 27899998754
No 294
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=55.64 E-value=6.7 Score=19.02 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=17.0
Q ss_pred EEecCCCHHHHHHHHHHhhc
Q psy13287 105 YIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 105 ~~h~~~~~~~R~~~~~~f~~ 124 (140)
..||+|+-.+.++..+.|-.
T Consensus 3 ~~hG~MD~~~hE~Ty~gFi~ 22 (43)
T 1qle_D 3 HKHGEMDIRHQQATFAGFIK 22 (43)
T ss_dssp CCTTCSCCHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHH
Confidence 35899999999999999853
No 295
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=55.54 E-value=54 Score=23.45 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=44.1
Q ss_pred HHHHHHHhhCCCCcEEEEeCch--H--HHHHHHHHHHhcCceEEEEecC---CCHHHHHHHHHHhhcCCccEEEE
Q psy13287 65 HCLNTLFSKLQINQSIIFCNST--Q--RVELLAKKITELGYCCYYIHAR---MAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 65 ~~l~~ll~~~~~~~~lIF~~t~--~--~~~~~~~~L~~~~~~v~~~h~~---~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
..+.+.++....++++|.+... + -.+.+.+.|.+.|+.+..+.+. -+.+.=.+..+.+++.+++++|+
T Consensus 20 ~~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIa 94 (386)
T 1rrm_A 20 GALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIA 94 (386)
T ss_dssp GGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEE
Confidence 3344555554456778777432 1 3677788888888887666543 34555667777788777888875
No 296
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=55.52 E-value=48 Score=22.85 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=39.7
Q ss_pred HHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCCCHHHHHHHHHHhhcCCcc
Q psy13287 67 LNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC-CYYIHARMAQAHRNRVFHDFRSGLCR 128 (140)
Q Consensus 67 l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~~~~~R~~~~~~f~~g~~~ 128 (140)
+.++..+.+.+-+++|++. +.+..+.+..-+.|++ +..+..+++..+..++.+.-++..++
T Consensus 56 l~el~~~~~~Dv~Ii~vp~-~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~ 117 (288)
T 1oi7_A 56 VKEAVAHHEVDASIIFVPA-PAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSR 117 (288)
T ss_dssp HHHHHHHSCCSEEEECCCH-HHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred HHHHhhcCCCCEEEEecCH-HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 3444443345556777764 5566666666677888 67788889887766777766654443
No 297
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=54.85 E-value=42 Score=22.01 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=38.9
Q ss_pred CcEEEEe-CchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhh--cCCccEEEEec
Q psy13287 77 NQSIIFC-NSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~-~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~--~g~~~vlv~T~ 134 (140)
.++++.. .+.+..+.+.+.+...+.++..+.+++...+ -...++... .|.+++||..-
T Consensus 29 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA 90 (246)
T 3osu_A 29 YNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNA 90 (246)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3444433 4667788888888888888888999886443 333444443 27899998764
No 298
>3qhq_A CSN2, SAG0897 family crispr-associated protein; helicase, transferase; 2.00A {Streptococcus agalactiae} PDB: 3toc_A 3v7f_A
Probab=54.60 E-value=46 Score=22.32 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=39.5
Q ss_pred chHHHHHHHHhhCCCCcEEEEeCc-----hHHHHHHHHHHHhcCceEEEEecC
Q psy13287 62 QKVHCLNTLFSKLQINQSIIFCNS-----TQRVELLAKKITELGYCCYYIHAR 109 (140)
Q Consensus 62 ~k~~~l~~ll~~~~~~~~lIF~~t-----~~~~~~~~~~L~~~~~~v~~~h~~ 109 (140)
+|.....++.......+++||+|- .++...+.+.....++++.++-..
T Consensus 147 eki~~~lki~~el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~vLlIE~~ 199 (229)
T 3qhq_A 147 EKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPR 199 (229)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEESCGGGCCHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred HHHHHHHHHHHHhcCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeEEEEecc
Confidence 567777777888889999999985 678888999888888888777665
No 299
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=54.59 E-value=49 Score=22.71 Aligned_cols=45 Identities=4% Similarity=0.101 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEe
Q psy13287 89 VELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS 133 (140)
Q Consensus 89 ~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T 133 (140)
.+.+.+.+.+.|+.+..+..+-+.+.....++.+....++.+|..
T Consensus 81 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~ 125 (339)
T 3h5o_A 81 LTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLIT 125 (339)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEe
Confidence 444455555667766666666566555666666666666655544
No 300
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=53.90 E-value=51 Score=22.69 Aligned_cols=36 Identities=3% Similarity=-0.211 Sum_probs=15.7
Q ss_pred HHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 94 KKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 94 ~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
+.|...++.-..+.+..... ..++.+....+.+++.
T Consensus 118 ~~l~~~~vdGiIi~~~~~~~---~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 118 YEMLSWRPSGVIIAGLEHSE---AARAMLDAAGIPVVEI 153 (344)
T ss_dssp HHHHTTCCSEEEEECSCCCH---HHHHHHHHCSSCEEEE
T ss_pred HHHHhCCCCEEEEECCCCCH---HHHHHHHhCCCCEEEE
Confidence 33444455444444322221 3344555555565544
No 301
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=53.84 E-value=23 Score=20.27 Aligned_cols=60 Identities=13% Similarity=0.025 Sum_probs=40.3
Q ss_pred cCCCeEEEEEEcCccchHHHHHHHHhhC-CCCcEEEEeCc------hHHHHHHHHHHHhcCceEEEE
Q psy13287 47 TLKGVTQYYAFVQERQKVHCLNTLFSKL-QINQSIIFCNS------TQRVELLAKKITELGYCCYYI 106 (140)
Q Consensus 47 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t------~~~~~~~~~~L~~~~~~v~~~ 106 (140)
..+.+......++.+.++..+...|++. +-...-+|+|+ ......+++..+..|.=...|
T Consensus 23 ~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Y 89 (96)
T 1wz3_A 23 GAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNY 89 (96)
T ss_dssp TCCCCSCCEEEEETTSBTHHHHHHHHHHHTCSSCEEEEEEEECCCTTSBHHHHHHHHCBTTBEEEEE
T ss_pred CCCcccccEEEeCCCCcHHHHHHHHHHhcCCceEEEEECCcccCChhhHHHHHHHHhCCCCEEEEEE
Confidence 3566777777788888888888888654 33466688876 446777777777645433333
No 302
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=53.50 E-value=45 Score=21.96 Aligned_cols=13 Identities=0% Similarity=-0.202 Sum_probs=6.1
Q ss_pred HHHhhcCCccEEE
Q psy13287 119 FHDFRSGLCRNLV 131 (140)
Q Consensus 119 ~~~f~~g~~~vlv 131 (140)
++.+++..+++++
T Consensus 75 ~~~~~~~~iPvV~ 87 (271)
T 2dri_A 75 VKMANQANIPVIT 87 (271)
T ss_dssp HHHHHHTTCCEEE
T ss_pred HHHHHHCCCcEEE
Confidence 4444444455443
No 303
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=53.48 E-value=7.4 Score=25.81 Aligned_cols=71 Identities=15% Similarity=0.019 Sum_probs=43.4
Q ss_pred hHHHHHHHHhh--CCCCcEEEEeCchHHHHHHHHHHHhcCce---EEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 63 KVHCLNTLFSK--LQINQSIIFCNSTQRVELLAKKITELGYC---CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 63 k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~~~~~L~~~~~~---v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..+.|.+++.. ....++++++ .....+.+.+.|++.|.. +..|.-...........+.+..+++++++-|+
T Consensus 105 ~~e~L~~~~~~~~~~g~~vL~~r-g~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS 180 (240)
T 3mw8_A 105 ATEGLLTLPSLEQVSGKQIVIVR-GKGGREAMADGLRLRGANVSYLEVYQRACPPLDAPASVSRWQSFGIDTIVVTS 180 (240)
T ss_dssp CGGGGGGCGGGTCCTTCEEEEEE-ESSSCCHHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHHHHHTCCEEECCS
T ss_pred CHHHHHHhhhhccCCCCEEEEEe-CCCcHHHHHHHHHHCCCEEEEEEEEEeeCCCCCHHHHHHHHHhCCCCEEEEcC
Confidence 33444444432 3445666666 444557899999999875 34444433333334556667778889888776
No 304
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=53.35 E-value=30 Score=24.31 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCceEEEE---------ecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 87 QRVELLAKKITELGYCCYYI---------HARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 87 ~~~~~~~~~L~~~~~~v~~~---------h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...+...+.|++.|++|..- .++.+.+-.....+.|.+.+++.++|+-
T Consensus 32 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 88 (311)
T 1zl0_A 32 DVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLR 88 (311)
T ss_dssp HHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESC
T ss_pred HHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEcc
Confidence 44566677788888877542 2333444445556677888999999864
No 305
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP analog binding, ATP-binding, metal-binding, nucleotide biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium} PDB: 3lpn_A* 3nag_A* 3mbi_A*
Probab=52.94 E-value=52 Score=22.78 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=41.1
Q ss_pred CCcEEE---EeCchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 76 INQSII---FCNSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 76 ~~~~lI---F~~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
.+.+|| .+.|-.+....++.|++.|. .+.+.||-.+...++.+ +..++-+++||..
T Consensus 203 gk~vliVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~th~v~s~~a~~~l-----~s~i~~vv~Tnti 264 (286)
T 3lrt_A 203 GKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLFVNGSENKI-----LQNADEIHVTDTV 264 (286)
T ss_dssp TCEEEEEEEEESSCHHHHHHHHHHHHTTCSEEEEEEEEECCCTTHHHHH-----TTTCSEEEEESSS
T ss_pred cCEEEEEeccccccHHHHHHHHHHHhCCCCEEEEEEEEeecCchHHHHH-----HcCCCEEEEecCC
Confidence 444555 35888899999999999864 57889998776654444 3458889999854
No 306
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=52.68 E-value=48 Score=22.03 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=17.8
Q ss_pred HHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 95 KITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 95 ~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
.+.+.|+.+..+..+-+.+.....++.+...+++.+|.
T Consensus 33 ~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi 70 (291)
T 3egc_A 33 EARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLIL 70 (291)
T ss_dssp HHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 33444555544444444444444455555444554443
No 307
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=52.67 E-value=2.9 Score=31.00 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=0.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCc-eEEEEecCCCH
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGY-CCYYIHARMAQ 112 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~-~v~~~h~~~~~ 112 (140)
..++++||.+-..+...+..|+..|+ ++..+-|++..
T Consensus 425 ~~~iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 462 (466)
T 3r2u_A 425 NDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYKD 462 (466)
T ss_dssp --------------------------------------
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCCEEEecChHHH
Confidence 45789999998888999999999998 68888888653
No 308
>3s5u_A Putative uncharacterized protein; crispr, crispr adaptation mechanism, NEW spacer aquisition, binding, DNA binding protein; 2.70A {Enterococcus faecalis}
Probab=52.45 E-value=49 Score=22.01 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=40.4
Q ss_pred chHHHHHHHHhhCCCCcEEEEeCc-----hHHHHHHHHHHHhcCceEEEEecCC
Q psy13287 62 QKVHCLNTLFSKLQINQSIIFCNS-----TQRVELLAKKITELGYCCYYIHARM 110 (140)
Q Consensus 62 ~k~~~l~~ll~~~~~~~~lIF~~t-----~~~~~~~~~~L~~~~~~v~~~h~~~ 110 (140)
+|.....++.......+++||+|- .++...+.+.....++++.++-.+.
T Consensus 147 e~i~~~lki~~el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~vL~IE~~~ 200 (220)
T 3s5u_A 147 EKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRV 200 (220)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEESGGGGCCHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHHHHHHHHhcCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeEEEEeccc
Confidence 577777778888889999999985 6788889999888888888877663
No 309
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=52.18 E-value=56 Score=22.67 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=40.9
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecc
Q psy13287 77 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
..++|.+.+.+.+........+.|.++..-.-+.+.+++.. ++++.+ +..++++.|.
T Consensus 89 aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~-L~~aa~-~~~~~~a~N~ 145 (288)
T 3ijp_A 89 TEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQ-IADFAK-YTTIVKSGNM 145 (288)
T ss_dssp CSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHH-HHHHHT-TSEEEECSCC
T ss_pred CCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHH-HHHHhC-cCCEEEECCC
Confidence 45777777788888888888888988877677787766544 444544 4788888873
No 310
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=52.15 E-value=31 Score=19.63 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=45.8
Q ss_pred EEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC----CccE
Q psy13287 55 YAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG----LCRN 129 (140)
Q Consensus 55 ~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g----~~~v 129 (140)
++.+++ ..-...+..++... ... +..+.+..++ .+.+.+....+..+--.++...-...++.++.. ...+
T Consensus 9 ilivdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~a---~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~i 83 (132)
T 3lte_A 9 ILVVDDDQAMAAAIERVLKRD-HWQ-VEIAHNGFDA---GIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKI 83 (132)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-TCE-EEEESSHHHH---HHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEE
T ss_pred EEEEECCHHHHHHHHHHHHHC-CcE-EEEeCCHHHH---HHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeE
Confidence 444443 34456677777763 233 3445544443 445566678888888887776677788888753 3556
Q ss_pred EEEec
Q psy13287 130 LVCSG 134 (140)
Q Consensus 130 lv~T~ 134 (140)
++.|+
T Consensus 84 i~~~~ 88 (132)
T 3lte_A 84 LVVSG 88 (132)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 66654
No 311
>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A
Probab=52.01 E-value=45 Score=24.46 Aligned_cols=50 Identities=12% Similarity=0.029 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCceEEEEecCCC-HHHHHHHHHHhhc--CCccEEEEecccC
Q psy13287 88 RVELLAKKITELGYCCYYIHARMA-QAHRNRVFHDFRS--GLCRNLVCSGDSS 137 (140)
Q Consensus 88 ~~~~~~~~L~~~~~~v~~~h~~~~-~~~R~~~~~~f~~--g~~~vlv~T~~~~ 137 (140)
....+.+..++.|..+..+.++.. .+.+..+++..++ |++++||-.=..+
T Consensus 99 ~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i~~vi~~i~~~~G~IDiLVhS~A~~ 151 (401)
T 4ggo_A 99 NNLAFDEAAKREGLYSVTIDGDAFSDEIKAQVIEEAKKKGIKFDLIVYSLASP 151 (401)
T ss_dssp HHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred hHHHHHHHHHHcCCCceeEeCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 356677888888999999999984 5568888888875 8999999875433
No 312
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=51.87 E-value=30 Score=19.36 Aligned_cols=73 Identities=4% Similarity=-0.074 Sum_probs=41.0
Q ss_pred EEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCC-HHHHHHHHHHhhc----CCcc
Q psy13287 55 YAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA-QAHRNRVFHDFRS----GLCR 128 (140)
Q Consensus 55 ~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~-~~~R~~~~~~f~~----g~~~ 128 (140)
+..+++ ..-...+...+... ... +..+.+..++. +.+.+..+.+..+--.++ ...-...++.++. ..+.
T Consensus 8 ilivdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~a~---~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ 82 (127)
T 2gkg_A 8 ILIVESDTALSATLRSALEGR-GFT-VDETTDGKGSV---EQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVP 82 (127)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-TCE-EEEECCHHHHH---HHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSC
T ss_pred EEEEeCCHHHHHHHHHHHHhc-Cce-EEEecCHHHHH---HHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCC
Confidence 334443 33456677777663 333 34555555544 344455677777776665 4445566666664 3566
Q ss_pred EEEE
Q psy13287 129 NLVC 132 (140)
Q Consensus 129 vlv~ 132 (140)
+++.
T Consensus 83 ii~~ 86 (127)
T 2gkg_A 83 IVII 86 (127)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 313
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=51.82 E-value=29 Score=20.23 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=47.2
Q ss_pred EEEcC-ccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc----CCccE
Q psy13287 55 YAFVQ-ERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS----GLCRN 129 (140)
Q Consensus 55 ~~~~~-~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~----g~~~v 129 (140)
++.++ +..-...+...+... .. -+..+.+..++. +.+.+..+.+..+--.++...-...++.++. ..+.+
T Consensus 11 iLivd~~~~~~~~l~~~L~~~-g~-~v~~~~~~~~a~---~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pi 85 (147)
T 2zay_A 11 IMLVDTQLPALAASISALSQE-GF-DIIQCGNAIEAV---PVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPV 85 (147)
T ss_dssp EEEECTTGGGGHHHHHHHHHH-TE-EEEEESSHHHHH---HHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCE
T ss_pred EEEEeCCHHHHHHHHHHHHHc-CC-eEEEeCCHHHHH---HHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCE
Confidence 44444 344566677777663 22 344555555443 4455557788888877776666677787775 35788
Q ss_pred EEEecc
Q psy13287 130 LVCSGD 135 (140)
Q Consensus 130 lv~T~~ 135 (140)
++.|+.
T Consensus 86 i~ls~~ 91 (147)
T 2zay_A 86 IALSGR 91 (147)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 888763
No 314
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=51.65 E-value=51 Score=21.97 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=38.9
Q ss_pred EEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhhc--CCccEEEEec
Q psy13287 80 IIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFRS--GLCRNLVCSG 134 (140)
Q Consensus 80 lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~~--g~~~vlv~T~ 134 (140)
+++..+.+..+.+.+.+...+.++..+.+++...+ -...++...+ |.+++||..-
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nA 112 (272)
T 4e3z_A 55 VNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNA 112 (272)
T ss_dssp EEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred EEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 34467777888888888888888999999986443 4444444432 7899998754
No 315
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=51.27 E-value=34 Score=19.82 Aligned_cols=76 Identities=8% Similarity=-0.001 Sum_probs=47.1
Q ss_pred EEEcCcc-chHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc----CCccE
Q psy13287 55 YAFVQER-QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS----GLCRN 129 (140)
Q Consensus 55 ~~~~~~~-~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~----g~~~v 129 (140)
+..++++ .-...+..++... ... +..+.+..++ .+.+.+..+.+..+--.|+...-.++++.++. ..+.+
T Consensus 7 iLivdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~a---l~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 7 LLIVDDDDTVAEMLELVLRGA-GYE-VRRAASGEEA---LQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-TCE-EEEESSHHHH---HHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred EEEEeCCHHHHHHHHHHHHHC-CCE-EEEeCCHHHH---HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 3444443 3456677777764 233 3445544443 44556667788888877776666777777764 35778
Q ss_pred EEEecc
Q psy13287 130 LVCSGD 135 (140)
Q Consensus 130 lv~T~~ 135 (140)
++.|.-
T Consensus 82 i~~t~~ 87 (136)
T 3t6k_A 82 LMLTAQ 87 (136)
T ss_dssp EEEECT
T ss_pred EEEecC
Confidence 888763
No 316
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=51.22 E-value=19 Score=23.69 Aligned_cols=64 Identities=13% Similarity=0.020 Sum_probs=40.8
Q ss_pred HHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecC--------CCHHHHHHHHHHhhcCCccEEEEecccC
Q psy13287 69 TLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAR--------MAQAHRNRVFHDFRSGLCRNLVCSGDSS 137 (140)
Q Consensus 69 ~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~--------~~~~~R~~~~~~f~~g~~~vlv~T~~~~ 137 (140)
+..+....+.++|...+-+++..+++.+.. ++=|..+|.+ |+++ ..+.+++..++|+.+|-+++
T Consensus 45 era~e~~Ik~iVVASssG~TA~k~~e~~~~-~lVvVTh~~GF~~pg~~e~~~e----~~~~L~~~G~~V~t~tH~ls 116 (206)
T 1t57_A 45 ERADQLGIRNFVVASVSGETALRLSEMVEG-NIVSVTHHAGFREKGQLELEDE----ARDALLERGVNVYAGSHALS 116 (206)
T ss_dssp HHHHHHTCCEEEEECSSSHHHHHHHTTCCS-EEEEECCCTTSSSTTCCSSCHH----HHHHHHHHTCEEECCSCTTT
T ss_pred HHHHHcCCCEEEEEeCCCHHHHHHHHHccC-CEEEEeCcCCCCCCCCCcCCHH----HHHHHHhCCCEEEEeecccc
Confidence 333444667888888999999999887722 2333444443 4554 44555556678887777654
No 317
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=51.09 E-value=65 Score=23.06 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=45.2
Q ss_pred HHHHHHHhhCCCCcEEEEeCc--hH----HHHHHHHHHHhcCceEEEEec---CCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 65 HCLNTLFSKLQINQSIIFCNS--TQ----RVELLAKKITELGYCCYYIHA---RMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 65 ~~l~~ll~~~~~~~~lIF~~t--~~----~~~~~~~~L~~~~~~v~~~h~---~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
+.+.+.++....++++|.+.. .+ -.+++.+.|.+.|+.+..+.+ .-+.+.=.+..+.+++.+++++|+
T Consensus 22 ~~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIa 98 (387)
T 3bfj_A 22 SVVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVT 98 (387)
T ss_dssp GGHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 335555555544677777743 12 477888888888888766653 234556677778888888888876
No 318
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=50.95 E-value=42 Score=22.26 Aligned_cols=37 Identities=5% Similarity=-0.009 Sum_probs=15.6
Q ss_pred HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 92 LAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
+.+.+...++.-..+.+..... ..++.+....+.+++
T Consensus 61 ~~~~~~~~~vdgiIi~~~~~~~---~~~~~l~~~~iPvV~ 97 (292)
T 3k4h_A 61 VVKMVQGRQIGGIILLYSREND---RIIQYLHEQNFPFVL 97 (292)
T ss_dssp HHHHHHTTCCCEEEESCCBTTC---HHHHHHHHTTCCEEE
T ss_pred HHHHHHcCCCCEEEEeCCCCCh---HHHHHHHHCCCCEEE
Confidence 3344444455544444322211 234445444455443
No 319
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=50.76 E-value=5.1 Score=27.21 Aligned_cols=46 Identities=13% Similarity=0.002 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEe
Q psy13287 86 TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS 133 (140)
Q Consensus 86 ~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T 133 (140)
++..++..+.+++.+.++..+..++...+ .+.+.+..|.+++||.-
T Consensus 41 r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~--~v~~~~~~g~iDiLVNN 86 (247)
T 4hp8_A 41 RRAPDETLDIIAKDGGNASALLIDFADPL--AAKDSFTDAGFDILVNN 86 (247)
T ss_dssp SSCCHHHHHHHHHTTCCEEEEECCTTSTT--TTTTSSTTTCCCEEEEC
T ss_pred CCcHHHHHHHHHHhCCcEEEEEccCCCHH--HHHHHHHhCCCCEEEEC
Confidence 34446777888888888999999876543 34445567999999864
No 320
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=50.29 E-value=52 Score=21.75 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=42.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhhc--CCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFRS--GLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~~--g~~~vlv~T~ 134 (140)
.-++++...+.+..+.+.+.++..+.++..+..++...+ -...++...+ |.+++||..-
T Consensus 36 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA 97 (256)
T 3gaf_A 36 GASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNA 97 (256)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 445777777778888899999888888999999986543 3444444432 7899998754
No 321
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=50.22 E-value=53 Score=21.79 Aligned_cols=37 Identities=8% Similarity=-0.014 Sum_probs=15.7
Q ss_pred HHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 94 KKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 94 ~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
+.+...++.-..+.+..+.. -...++.+++..+.+++
T Consensus 51 ~~l~~~~vdgiIi~~~~~~~-~~~~~~~~~~~~iPvV~ 87 (283)
T 2ioy_A 51 EDLIQQKVDVLLINPVDSDA-VVTAIKEANSKNIPVIT 87 (283)
T ss_dssp HHHHHTTCSEEEECCSSTTT-THHHHHHHHHTTCCEEE
T ss_pred HHHHHcCCCEEEEeCCchhh-hHHHHHHHHHCCCeEEE
Confidence 33444555544444432221 11234445544566544
No 322
>2owl_A Recombination-associated protein RDGC; replication, RECA; 2.40A {Escherichia coli}
Probab=50.08 E-value=54 Score=22.96 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=32.1
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHH
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHR 115 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R 115 (140)
+-.+|.+.|.+.|+.+...|++. +.++..++-..++...
T Consensus 135 ~~l~VdaaS~k~aE~~l~lLrktlgsLpv~pl~~~~~p~~~ 175 (303)
T 2owl_A 135 GLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELT 175 (303)
T ss_dssp TEEEECCSCHHHHHHHHHHHHHHHSCCCEEECCBSSCHHHH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHhhCCCccccCCCCCCHHHH
Confidence 44566668899999999999987 5899999999988753
No 323
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=49.31 E-value=57 Score=21.89 Aligned_cols=64 Identities=14% Similarity=0.049 Sum_probs=31.4
Q ss_pred HHHHHHHhhCCC-C-c-EEEEeCchHHHHH---HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEe
Q psy13287 65 HCLNTLFSKLQI-N-Q-SIIFCNSTQRVEL---LAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS 133 (140)
Q Consensus 65 ~~l~~ll~~~~~-~-~-~lIF~~t~~~~~~---~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T 133 (140)
.-+.+.+..... + . .+++|++..+.+. +.+.|.+.+.....+.+. .... .... . ...+.++++.
T Consensus 21 ~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~--~~~~-~~~~-~-~~~iPvV~~~ 90 (295)
T 3lft_A 21 KGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIAT--PAAQ-GLAS-A-TKDLPVIMAA 90 (295)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESH--HHHH-HHHH-H-CSSSCEEEES
T ss_pred HHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCc--HHHH-HHHH-c-CCCCCEEEEe
Confidence 334444544333 1 3 4567877655444 444454556665555553 2221 1222 2 3567877763
No 324
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=49.23 E-value=33 Score=19.16 Aligned_cols=54 Identities=11% Similarity=-0.028 Sum_probs=38.0
Q ss_pred cEEEEe-CchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC--CccEEEE
Q psy13287 78 QSIIFC-NSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG--LCRNLVC 132 (140)
Q Consensus 78 ~~lIF~-~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g--~~~vlv~ 132 (140)
++.||. +...-|..+.+.|++.|+....+.=+.+++.|+...+. ..| .+..++-
T Consensus 5 ~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~-~~G~~tVP~I~i 61 (92)
T 2lqo_A 5 ALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSV-NGGNRTVPTVKF 61 (92)
T ss_dssp CEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHH-SSSSSCSCEEEE
T ss_pred cEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHH-cCCCCEeCEEEE
Confidence 466776 55677888888999999888888777778777766553 333 3555544
No 325
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=49.13 E-value=55 Score=21.64 Aligned_cols=59 Identities=8% Similarity=0.100 Sum_probs=41.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHH-HHHHHHHHhh--cCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQA-HRNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~-~R~~~~~~f~--~g~~~vlv~T~ 134 (140)
.-++++...+.+..+.+.+.+...+.++..+..++... .-...++... .|.+++||..-
T Consensus 30 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 91 (257)
T 3imf_A 30 GARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNA 91 (257)
T ss_dssp TCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 44577777777788888888877777888899998654 3444444443 27899998754
No 326
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=49.04 E-value=57 Score=21.85 Aligned_cols=58 Identities=19% Similarity=0.161 Sum_probs=39.1
Q ss_pred CcEEEE-eCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhh--cCCccEEEEec
Q psy13287 77 NQSIIF-CNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF-~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~--~g~~~vlv~T~ 134 (140)
-++++. .+..+..+.+.+.+...+.++..+.+++...+ -...++... .|.+++||..-
T Consensus 56 ~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA 117 (271)
T 3v2g_A 56 AAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSA 117 (271)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence 344443 45567788888888888888889999986543 333444432 27899998754
No 327
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=49.01 E-value=44 Score=22.37 Aligned_cols=37 Identities=8% Similarity=-0.041 Sum_probs=16.6
Q ss_pred HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 92 LAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
+.+.|...++.-..+.+..... ..++.+....+.+++
T Consensus 60 ~~~~l~~~~vdGiI~~~~~~~~---~~~~~l~~~~iPvV~ 96 (295)
T 3hcw_A 60 VYKMIKQRMVDAFILLYSKEND---PIKQMLIDESMPFIV 96 (295)
T ss_dssp HHHHHHTTCCSEEEESCCCTTC---HHHHHHHHTTCCEEE
T ss_pred HHHHHHhCCcCEEEEcCcccCh---HHHHHHHhCCCCEEE
Confidence 4444555565544444332221 234445544555544
No 328
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=49.00 E-value=80 Score=23.50 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=36.4
Q ss_pred HHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHH
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNR 117 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~ 117 (140)
.+...++........+=||+|. +.+.+.+..+..+..+..+||+-+++.-..
T Consensus 293 ~~~a~~i~~~~~v~~VgVFvn~--~~~~i~~~~~~~~ld~vQLHG~E~~~~~~~ 344 (452)
T 1pii_A 293 VEQAQEVMAAAPLQYVGVFRNH--DIADVVDKAKVLSLAAVQLHGNEEQLYIDT 344 (452)
T ss_dssp HHHHHHHHHHCCCEEEEEESSC--CHHHHHHHHHHHTCSEEEECSCCCHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEEeCC--CHHHHHHHHHhcCCCEEEECCCCCHHHHHH
Confidence 4555666555444566799975 356666777777999999999988776444
No 329
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=48.84 E-value=63 Score=22.30 Aligned_cols=14 Identities=0% Similarity=-0.330 Sum_probs=6.3
Q ss_pred ceEEEEecCCCHHH
Q psy13287 101 YCCYYIHARMAQAH 114 (140)
Q Consensus 101 ~~v~~~h~~~~~~~ 114 (140)
..+..-.|+.+..+
T Consensus 77 vpviaGvg~~~t~~ 90 (297)
T 3flu_A 77 VPVIAGTGANNTVE 90 (297)
T ss_dssp SCEEEECCCSSHHH
T ss_pred CcEEEeCCCcCHHH
Confidence 34444444444443
No 330
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=48.68 E-value=57 Score=21.73 Aligned_cols=37 Identities=5% Similarity=0.021 Sum_probs=17.4
Q ss_pred HHHHHHHhcCceEEEEecC-CCHHHHHHHHHHhhcCCccEEE
Q psy13287 91 LLAKKITELGYCCYYIHAR-MAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~-~~~~~R~~~~~~f~~g~~~vlv 131 (140)
...+.|...++.-..+.+. .+. ..++.+....+.+++
T Consensus 63 ~~~~~l~~~~vdgiIi~~~~~~~----~~~~~l~~~~iPvV~ 100 (289)
T 2fep_A 63 HLLNTMLGKQVDGIVFMGGNITD----EHVAEFKRSPVPIVL 100 (289)
T ss_dssp HHHHHHHHTTCSEEEECCSCCCH----HHHHHHHHSSSCEEE
T ss_pred HHHHHHHhCCCCEEEEecCCCCH----HHHHHHHhcCCCEEE
Confidence 3444555556665555443 332 234445444455443
No 331
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=48.58 E-value=45 Score=20.50 Aligned_cols=45 Identities=9% Similarity=0.227 Sum_probs=32.4
Q ss_pred hHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEe
Q psy13287 63 KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIH 107 (140)
Q Consensus 63 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h 107 (140)
....+.++++..+.+..++.++.....+.+.+.|++.|+.+..+.
T Consensus 103 ~~~~~~~~~~~lpgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~ 147 (170)
T 3q87_B 103 GREVIDRFVDAVTVGMLYLLVIEANRPKEVLARLEERGYGTRILK 147 (170)
T ss_dssp GCHHHHHHHHHCCSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHHhhCCCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEE
Confidence 355666666666556666777788889999999999888754443
No 332
>2owy_A Recombination-associated protein RDGC; homologous recombination, RECA shaped DNA binding proteins, DNA binding protein; 2.50A {Pseudomonas aeruginosa}
Probab=48.27 E-value=54 Score=22.99 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=31.7
Q ss_pred CcEEEEeCchHHHHHHHHHHHhc--CceEEEEecCCCHHHH
Q psy13287 77 NQSIIFCNSTQRVELLAKKITEL--GYCCYYIHARMAQAHR 115 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~--~~~v~~~h~~~~~~~R 115 (140)
+-.+|.+.|.+.|+.+...|++. +.++..++-..++...
T Consensus 135 ~~l~VdaaS~k~aE~~l~lLrktlgsLpv~pl~~~~~p~~~ 175 (306)
T 2owy_A 135 GLILVDSASAKKAEDLLSTLREALGSLPVRPLSVKVAPTAT 175 (306)
T ss_dssp TEEEECCSCHHHHHHHHHHHHHHHSCCCEEECCBSSCHHHH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHhhCCCccccCCcCCCHHHH
Confidence 33456667899999999999987 5899999999988744
No 333
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=48.25 E-value=37 Score=19.48 Aligned_cols=72 Identities=8% Similarity=-0.087 Sum_probs=39.5
Q ss_pred EEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc-C-CccEEE
Q psy13287 55 YAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS-G-LCRNLV 131 (140)
Q Consensus 55 ~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~-g-~~~vlv 131 (140)
++.+++ ..-...+...+... ... +..+.+..++. +.+.+..+.+.. -.+++.. ..++.++. . .+.+++
T Consensus 21 ilivdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~al---~~l~~~~~dlvi-~~~~~g~---~~~~~l~~~~~~~~ii~ 91 (137)
T 2pln_A 21 VLLIEKNSVLGGEIEKGLNVK-GFM-ADVTESLEDGE---YLMDIRNYDLVM-VSDKNAL---SFVSRIKEKHSSIVVLV 91 (137)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-TCE-EEEESCHHHHH---HHHHHSCCSEEE-ECSTTHH---HHHHHHHHHSTTSEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHc-CcE-EEEeCCHHHHH---HHHHcCCCCEEE-EcCccHH---HHHHHHHhcCCCccEEE
Confidence 444444 34456677777763 233 44565555444 445555666666 4444443 44444443 3 678888
Q ss_pred Eecc
Q psy13287 132 CSGD 135 (140)
Q Consensus 132 ~T~~ 135 (140)
.|+.
T Consensus 92 ls~~ 95 (137)
T 2pln_A 92 SSDN 95 (137)
T ss_dssp EESS
T ss_pred EeCC
Confidence 8764
No 334
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=48.20 E-value=42 Score=20.00 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=38.3
Q ss_pred CcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhC---CC-CcEEEEeCch-----HHHHHHHHHHHh
Q psy13287 37 PYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKL---QI-NQSIIFCNST-----QRVELLAKKITE 98 (140)
Q Consensus 37 ~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~---~~-~~~lIF~~t~-----~~~~~~~~~L~~ 98 (140)
|.+++..+....|.+......++.+..+..+..+|++. ++ ....+|+|.. ..+-++++..+.
T Consensus 32 PVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd 102 (118)
T 3rui_B 32 PVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKD 102 (118)
T ss_dssp EEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCC
T ss_pred EEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCC
Confidence 34444445555666777666678888888888888654 33 3456888752 334556666643
No 335
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=48.19 E-value=58 Score=21.62 Aligned_cols=16 Identities=0% Similarity=-0.322 Sum_probs=7.3
Q ss_pred HHHHHhcCceEEEEec
Q psy13287 93 AKKITELGYCCYYIHA 108 (140)
Q Consensus 93 ~~~L~~~~~~v~~~h~ 108 (140)
.+.+...++.-..+.+
T Consensus 57 ~~~l~~~~vdgiI~~~ 72 (285)
T 3c3k_A 57 LTLLSGKMVDGVITMD 72 (285)
T ss_dssp THHHHTTCCSEEEECC
T ss_pred HHHHHhCCCCEEEEeC
Confidence 3444444555444443
No 336
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=48.12 E-value=57 Score=21.59 Aligned_cols=37 Identities=5% Similarity=-0.037 Sum_probs=14.8
Q ss_pred HHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 94 KKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 94 ~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
+.|...++.-..+.+..+. .-...++.+.+..+.+++
T Consensus 58 ~~l~~~~vdgiI~~~~~~~-~~~~~~~~~~~~~iPvV~ 94 (293)
T 3l6u_A 58 LEFVHLKVDAIFITTLDDV-YIGSAIEEAKKAGIPVFA 94 (293)
T ss_dssp HHHHHTTCSEEEEECSCTT-TTHHHHHHHHHTTCCEEE
T ss_pred HHHHHcCCCEEEEecCChH-HHHHHHHHHHHcCCCEEE
Confidence 3344445544444332221 112334445444455443
No 337
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=48.03 E-value=38 Score=19.48 Aligned_cols=74 Identities=5% Similarity=0.064 Sum_probs=45.7
Q ss_pred EEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHh-cCceEEEEecCCCHHHHHHHHHHhhcC--CccEE
Q psy13287 55 YAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITE-LGYCCYYIHARMAQAHRNRVFHDFRSG--LCRNL 130 (140)
Q Consensus 55 ~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g--~~~vl 130 (140)
++.+++ ..-...+...+.... .. +..+.+..+ ..+.+++ ..+.+..+--.++...-...++.++.. .+.++
T Consensus 18 ilivdd~~~~~~~l~~~L~~~g-~~-v~~~~~~~~---al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii 92 (138)
T 2b4a_A 18 VTLVEDEPSHATLIQYHLNQLG-AE-VTVHPSGSA---FFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVL 92 (138)
T ss_dssp EEEECSCHHHHHHHHHHHHHTT-CE-EEEESSHHH---HHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHcC-CE-EEEeCCHHH---HHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 344443 344566777777642 33 445555444 3345566 667888888777765566777777753 57788
Q ss_pred EEe
Q psy13287 131 VCS 133 (140)
Q Consensus 131 v~T 133 (140)
+.|
T Consensus 93 ~ls 95 (138)
T 2b4a_A 93 ILT 95 (138)
T ss_dssp EEE
T ss_pred EEE
Confidence 877
No 338
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A*
Probab=47.93 E-value=46 Score=24.05 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=40.7
Q ss_pred CcEEEE---eCchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 77 NQSIIF---CNSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 77 ~~~lIF---~~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
..+||. +.|-.+....++.|++.|. .+.+.||=++... .+.+.+..++-+||||..
T Consensus 273 k~viiVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~tH~v~s~~a----~~~l~~s~id~vvvTnti 334 (379)
T 2ji4_A 273 RIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDA----PRRIEESAIDEVVVTNTI 334 (379)
T ss_dssp SEEEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEEEECCCTTH----HHHHHHSSCCEEEEESSS
T ss_pred CEEEEEecCCCchHHHHHHHHHHHhcCCCEEEEEEEeecCCcHH----HHHHHhCCCCEEEEecCC
Confidence 344443 4788889999999998865 4677888777654 445555678999999864
No 339
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=47.91 E-value=51 Score=20.91 Aligned_cols=58 Identities=5% Similarity=-0.017 Sum_probs=40.2
Q ss_pred CcEEEEeCchHH---HHHHHHHHHhcCce--EEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQR---VELLAKKITELGYC--CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~---~~~~~~~L~~~~~~--v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++.|.+-+.++ +++.+..|+..|++ +......-.++.-.+..+...+..++++|+--
T Consensus 4 ~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 66 (163)
T 3ors_A 4 MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGA 66 (163)
T ss_dssp CCEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 456677766554 67888888888664 44444455577777777888777788888754
No 340
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=47.49 E-value=41 Score=19.73 Aligned_cols=63 Identities=10% Similarity=0.025 Sum_probs=41.9
Q ss_pred HHHHHHhhCCCCcEEEEeC------chHHHHHHHHHHHhcCce-EEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 66 CLNTLFSKLQINQSIIFCN------STQRVELLAKKITELGYC-CYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 66 ~l~~ll~~~~~~~~lIF~~------t~~~~~~~~~~L~~~~~~-v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
.+.++++. .+++||.- ....|.++.+.|++.++. ...+.=+.+++.|..+.+..-...+..++
T Consensus 12 ~v~~~i~~---~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP~vf 81 (118)
T 2wem_A 12 QLDALVKK---DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVY 81 (118)
T ss_dssp HHHHHHHH---SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHhcc---CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcCeEE
Confidence 34444433 57899987 488899999999999985 77776666676666655443223344443
No 341
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=47.47 E-value=6 Score=22.36 Aligned_cols=21 Identities=14% Similarity=0.466 Sum_probs=17.9
Q ss_pred cCCCHHHHHHHHHHhhcCCcc
Q psy13287 108 ARMAQAHRNRVFHDFRSGLCR 128 (140)
Q Consensus 108 ~~~~~~~R~~~~~~f~~g~~~ 128 (140)
+++++++|.++++.|..|--+
T Consensus 59 ~~lt~~ek~elieeFn~G~e~ 79 (90)
T 1jr5_A 59 SELTQEDKKTLIDEFNEGFEG 79 (90)
T ss_dssp HTCCHHHHHHHHTTSSSSSTT
T ss_pred HHCCHHHHHHHHHHHhccchH
Confidence 469999999999999988543
No 342
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A
Probab=47.35 E-value=12 Score=23.44 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=24.4
Q ss_pred CCcEEE--EeC-chHHHHHHHHHHHh----------cCc-eEEEEecCC
Q psy13287 76 INQSII--FCN-STQRVELLAKKITE----------LGY-CCYYIHARM 110 (140)
Q Consensus 76 ~~~~lI--F~~-t~~~~~~~~~~L~~----------~~~-~v~~~h~~~ 110 (140)
..+++| ||. +-..+...+..|++ .|+ +|..+.|++
T Consensus 89 ~~~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~ 137 (175)
T 2a2k_A 89 DKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGY 137 (175)
T ss_dssp -CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHH
T ss_pred CCCeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCH
Confidence 345544 587 76677778888875 387 689999983
No 343
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=47.22 E-value=61 Score=21.66 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=43.3
Q ss_pred HHHHHhhCCCCcEEEEeC-chHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhh--cCCccEEEEec
Q psy13287 67 LNTLFSKLQINQSIIFCN-STQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 67 l~~ll~~~~~~~~lIF~~-t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~--~g~~~vlv~T~ 134 (140)
+.+.+.+. ..++++... +....+.+.+.+...+.++..+..++...+ -...++... .|.+++||..-
T Consensus 44 ia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~id~lv~nA 114 (269)
T 4dmm_A 44 IALELAAA-GAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNA 114 (269)
T ss_dssp HHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHC-CCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 44433332 344544444 677788888888888888889999986543 344444443 27899998754
No 344
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=47.11 E-value=60 Score=21.53 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=42.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhh--cCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~--~g~~~vlv~T~ 134 (140)
..++++...+.+..+.+.+.+...+.++..+..++...+ -...++... .|.+++||..-
T Consensus 35 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 35 GADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNA 96 (264)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred cCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence 446777777788888888889888888889999986543 334444443 27899998754
No 345
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=47.08 E-value=30 Score=19.96 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=47.1
Q ss_pred EEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCH--HHHHHHHHHhhc--CCccE
Q psy13287 55 YAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQ--AHRNRVFHDFRS--GLCRN 129 (140)
Q Consensus 55 ~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~--~~R~~~~~~f~~--g~~~v 129 (140)
+..+++ ..-...+..++... ... ++.+.+..+ ..+.+.+..+.+..+--.++. ..-...++.++. ..+.+
T Consensus 9 ilivdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~---a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~i 83 (136)
T 3kto_A 9 IYLVDHQKDARAALSKLLSPL-DVT-IQCFASAES---FMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPT 83 (136)
T ss_dssp EEEECSCHHHHHHHHHHHTTS-SSE-EEEESSHHH---HTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCE
T ss_pred EEEEcCCHHHHHHHHHHHHHC-CcE-EEEeCCHHH---HHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCE
Confidence 344443 34456677777664 233 334444433 334455556788888878877 777788888875 36788
Q ss_pred EEEecc
Q psy13287 130 LVCSGD 135 (140)
Q Consensus 130 lv~T~~ 135 (140)
++.|+.
T Consensus 84 i~~s~~ 89 (136)
T 3kto_A 84 IVMASS 89 (136)
T ss_dssp EEEESS
T ss_pred EEEEcC
Confidence 888763
No 346
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=46.69 E-value=70 Score=22.17 Aligned_cols=12 Identities=0% Similarity=-0.305 Sum_probs=4.9
Q ss_pred ceEEEEecCCCH
Q psy13287 101 YCCYYIHARMAQ 112 (140)
Q Consensus 101 ~~v~~~h~~~~~ 112 (140)
..+..--|+.+.
T Consensus 81 vpViaGvg~~~t 92 (303)
T 2wkj_A 81 IKLIAHVGCVST 92 (303)
T ss_dssp SEEEEECCCSSH
T ss_pred CcEEEecCCCCH
Confidence 334444444443
No 347
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=46.42 E-value=68 Score=21.95 Aligned_cols=56 Identities=2% Similarity=-0.128 Sum_probs=39.8
Q ss_pred cEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecc
Q psy13287 78 QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
.++|.|.+.+.+........+.|..+..-..+++.++...+.+ ..+ +..+++++|.
T Consensus 75 DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~-aa~-~~~vv~a~N~ 130 (272)
T 4f3y_A 75 DYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRA-AGE-KIALVFSANM 130 (272)
T ss_dssp SEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHH-HTT-TSEEEECSCC
T ss_pred CEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH-Hhc-cCCEEEECCC
Confidence 4677676777777888888888988877777788776555444 433 4778888773
No 348
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=46.39 E-value=5.3 Score=15.58 Aligned_cols=8 Identities=50% Similarity=1.182 Sum_probs=6.0
Q ss_pred EEEEeCch
Q psy13287 79 SIIFCNST 86 (140)
Q Consensus 79 ~lIF~~t~ 86 (140)
.|||||.+
T Consensus 7 piiycnrr 14 (21)
T 8tfv_A 7 PIIYCNRR 14 (26)
T ss_dssp CCEEEEGG
T ss_pred cEEEEcCc
Confidence 58999864
No 349
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=46.36 E-value=69 Score=22.01 Aligned_cols=13 Identities=8% Similarity=-0.286 Sum_probs=5.5
Q ss_pred ceEEEEecCCCHH
Q psy13287 101 YCCYYIHARMAQA 113 (140)
Q Consensus 101 ~~v~~~h~~~~~~ 113 (140)
.++..-.|+.+..
T Consensus 71 ~pvi~Gvg~~~t~ 83 (291)
T 3a5f_A 71 IPVIAGTGSNNTA 83 (291)
T ss_dssp SCEEEECCCSSHH
T ss_pred CcEEEeCCcccHH
Confidence 3444444444433
No 350
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=46.13 E-value=63 Score=21.50 Aligned_cols=13 Identities=0% Similarity=-0.422 Sum_probs=6.2
Q ss_pred HHHhhcCCccEEE
Q psy13287 119 FHDFRSGLCRNLV 131 (140)
Q Consensus 119 ~~~f~~g~~~vlv 131 (140)
++.+.+..+.+++
T Consensus 77 ~~~~~~~~iPvV~ 89 (288)
T 1gud_A 77 VARAWKKGIYLVN 89 (288)
T ss_dssp HHHHHHTTCEEEE
T ss_pred HHHHHHCCCeEEE
Confidence 4444444455544
No 351
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=46.10 E-value=63 Score=21.49 Aligned_cols=38 Identities=0% Similarity=0.055 Sum_probs=16.5
Q ss_pred HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 92 LAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
..+.+...++.-..+.+..... ...++.++...+.+++
T Consensus 68 ~~~~l~~~~vdgii~~~~~~~~--~~~~~~~~~~~iPvV~ 105 (293)
T 2iks_A 68 CIEHLLQRQVDAIIVSTSLPPE--HPFYQRWANDPFPIVA 105 (293)
T ss_dssp HHHHHHHTTCSEEEECCSSCTT--CHHHHTTTTSSSCEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCc--HHHHHHHHhCCCCEEE
Confidence 3344444555544444432221 1234555544455443
No 352
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=45.82 E-value=39 Score=18.97 Aligned_cols=75 Identities=9% Similarity=0.035 Sum_probs=47.5
Q ss_pred EEEcCcc-chHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc-CCccEEEE
Q psy13287 55 YAFVQER-QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS-GLCRNLVC 132 (140)
Q Consensus 55 ~~~~~~~-~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~-g~~~vlv~ 132 (140)
+..++++ .-...+...+... ... +..+.+..+ ..+.+.+..+.+..+--.++...-.+.++.++. ....+++.
T Consensus 5 ilivdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~---al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~ 79 (120)
T 3f6p_A 5 ILVVDDEKPIADILEFNLRKE-GYE-VHCAHDGNE---AVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIML 79 (120)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-TCE-EEEESSHHH---HHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEE
T ss_pred EEEEECCHHHHHHHHHHHHhC-CEE-EEEeCCHHH---HHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEE
Confidence 3444443 3456677777664 233 344554444 344566667888888888888777788888875 35677777
Q ss_pred ec
Q psy13287 133 SG 134 (140)
Q Consensus 133 T~ 134 (140)
|.
T Consensus 80 t~ 81 (120)
T 3f6p_A 80 TA 81 (120)
T ss_dssp EE
T ss_pred EC
Confidence 75
No 353
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=45.68 E-value=65 Score=21.49 Aligned_cols=34 Identities=9% Similarity=-0.013 Sum_probs=14.2
Q ss_pred hcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 98 ELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 98 ~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
..++.-..+.+.-+ ..-...++..++..+.+++.
T Consensus 55 ~~~vdgiii~~~~~-~~~~~~~~~~~~~~iPvV~~ 88 (306)
T 8abp_A 55 ASGAKGFVICTPDP-KLGSAIVAKARGYDMKVIAV 88 (306)
T ss_dssp HTTCCEEEEECSCG-GGHHHHHHHHHHTTCEEEEE
T ss_pred HcCCCEEEEeCCCc-hhhHHHHHHHHHCCCcEEEe
Confidence 34554444443222 22223344455445555443
No 354
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=45.61 E-value=70 Score=21.98 Aligned_cols=14 Identities=14% Similarity=-0.202 Sum_probs=6.3
Q ss_pred ceEEEEecCCCHHH
Q psy13287 101 YCCYYIHARMAQAH 114 (140)
Q Consensus 101 ~~v~~~h~~~~~~~ 114 (140)
.++..-.|+.+..+
T Consensus 71 ~pviaGvg~~~t~~ 84 (292)
T 2ojp_A 71 IPVIAGTGANATAE 84 (292)
T ss_dssp SCEEEECCCSSHHH
T ss_pred CcEEEecCCccHHH
Confidence 34444444444433
No 355
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=45.52 E-value=57 Score=21.36 Aligned_cols=39 Identities=10% Similarity=-0.043 Sum_probs=17.4
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
...+.+...++.-..+.+..... ..++.+++..+.+++.
T Consensus 50 ~~~~~l~~~~vdgii~~~~~~~~---~~~~~l~~~~iPvV~~ 88 (275)
T 3d8u_A 50 KLLSTFLESRPAGVVLFGSEHSQ---RTHQLLEASNTPVLEI 88 (275)
T ss_dssp HHHHHHHTSCCCCEEEESSCCCH---HHHHHHHHHTCCEEEE
T ss_pred HHHHHHHhcCCCEEEEeCCCCCH---HHHHHHHhCCCCEEEE
Confidence 33444545566544444432222 2344454444555443
No 356
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=45.25 E-value=74 Score=22.07 Aligned_cols=35 Identities=17% Similarity=0.033 Sum_probs=15.5
Q ss_pred CceEEEEecCCCHHHHHHHHHHhhc-CCccEEEEec
Q psy13287 100 GYCCYYIHARMAQAHRNRVFHDFRS-GLCRNLVCSG 134 (140)
Q Consensus 100 ~~~v~~~h~~~~~~~R~~~~~~f~~-g~~~vlv~T~ 134 (140)
...+..-.|+.+..+=.+..+...+ |---+++.++
T Consensus 84 rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 119 (304)
T 3l21_A 84 RARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTP 119 (304)
T ss_dssp TSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 3455555555555443333333332 4333444444
No 357
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=45.15 E-value=64 Score=21.28 Aligned_cols=59 Identities=5% Similarity=-0.108 Sum_probs=40.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhhc-CCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFRS-GLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~~-g~~~vlv~T~ 134 (140)
.-++++...+.+..+.+++.++..+.++.++..++...+ -...++.+.+ |.+++||..-
T Consensus 31 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id~lv~nA 91 (252)
T 3h7a_A 31 GFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLEVTIFNV 91 (252)
T ss_dssp TCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCceEEEECC
Confidence 345666667777788888888887778888888876443 3334444422 7888888654
No 358
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=45.01 E-value=72 Score=21.81 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=20.4
Q ss_pred HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 92 LAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
+.+.+.+.|+.+..+.+.-+.+.....++.+....++.+|.
T Consensus 85 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi 125 (338)
T 3dbi_A 85 AARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMI 125 (338)
T ss_dssp HHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEE
Confidence 33444445555555554444444444555555555555444
No 359
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1
Probab=44.50 E-value=5 Score=24.57 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=23.8
Q ss_pred CCCcEEEEeCchHH-------HHH---HHHHHHhcCceEEEEecCCC
Q psy13287 75 QINQSIIFCNSTQR-------VEL---LAKKITELGYCCYYIHARMA 111 (140)
Q Consensus 75 ~~~~~lIF~~t~~~-------~~~---~~~~L~~~~~~v~~~h~~~~ 111 (140)
+..+++|||.+-.. +.. +.+.|++.|+++..+.|++.
T Consensus 91 ~~~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~v~~L~GG~~ 137 (154)
T 1hzm_A 91 GTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEGGFS 137 (154)
T ss_dssp TSSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCCCEECCCCHH
T ss_pred CCCeEEEEeCCCCccccccccchHHHHHHHHHHHCCCceEEEcChHH
Confidence 34678899976432 133 34444455888889999954
No 360
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=44.46 E-value=80 Score=22.23 Aligned_cols=65 Identities=8% Similarity=-0.012 Sum_probs=36.6
Q ss_pred HHHHHhhCCCCcEEEEeCch---HHHHHHHHHHHhcCceEEEEe--cCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 67 LNTLFSKLQINQSIIFCNST---QRVELLAKKITELGYCCYYIH--ARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 67 l~~ll~~~~~~~~lIF~~t~---~~~~~~~~~L~~~~~~v~~~h--~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
+.+.++....++++|.+... ...+++.+.|.+.|+.+..+. ++-+.+.=.+. +.+++.+.+++|+
T Consensus 25 l~~~l~~~g~~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIa 94 (354)
T 3ce9_A 25 IGQIIKKGNFKRVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIG 94 (354)
T ss_dssp HHHHHGGGTCSEEEEEEETTHHHHHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEE
T ss_pred HHHHHHhcCCCeEEEEECccHHHHHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEE
Confidence 44455554435666666331 234566677777777665554 23344444555 6666667777765
No 361
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}
Probab=44.41 E-value=10 Score=25.16 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=24.2
Q ss_pred EEEEeC-chHHHHHHHHHHHhc----------Cc-eEEEEecCC
Q psy13287 79 SIIFCN-STQRVELLAKKITEL----------GY-CCYYIHARM 110 (140)
Q Consensus 79 ~lIF~~-t~~~~~~~~~~L~~~----------~~-~v~~~h~~~ 110 (140)
+++||. +-..+...+..|++. |+ +|..+.|++
T Consensus 127 VVvyC~~SG~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~ 170 (216)
T 3op3_A 127 IVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGY 170 (216)
T ss_dssp EEEECCC--CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHH
T ss_pred EEEEeCCCChHHHHHHHHHHHcCcccccccccCCCcEEEECCcH
Confidence 789999 877777888888765 56 699999994
No 362
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=44.40 E-value=68 Score=21.41 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=39.1
Q ss_pred CcEEEE-eCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhhc--CCccEEEEec
Q psy13287 77 NQSIIF-CNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFRS--GLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF-~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~~--g~~~vlv~T~ 134 (140)
.++++. ....+..+.+++.+...+.++..+..++...+ -...++...+ |.+++||..-
T Consensus 52 ~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lvnnA 113 (267)
T 3u5t_A 52 FTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNA 113 (267)
T ss_dssp CEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 344443 55667788888888888888888888886443 3344444432 7899988754
No 363
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=44.25 E-value=49 Score=19.71 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=14.7
Q ss_pred HHHHHHHHhhcCCccEEEEecc
Q psy13287 114 HRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 114 ~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
.=...++..+.|+++++|++++
T Consensus 59 ~l~~ll~~~~~g~~d~lvv~~l 80 (138)
T 3bvp_A 59 AMQRLINDIENKAFDTVLVYKL 80 (138)
T ss_dssp HHHHHHHGGGGTSCSEEEESSH
T ss_pred HHHHHHHHHHhCCCCEEEEEeC
Confidence 3455666677777777777763
No 364
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=44.25 E-value=75 Score=23.13 Aligned_cols=60 Identities=8% Similarity=0.097 Sum_probs=36.2
Q ss_pred EEEEe----CchHHHHHHHHHHHhcCceEEEEe-cCCCHHHHHHHHHHhhcCCccEEEEecccCCC
Q psy13287 79 SIIFC----NSTQRVELLAKKITELGYCCYYIH-ARMAQAHRNRVFHDFRSGLCRNLVCSGDSSAM 139 (140)
Q Consensus 79 ~lIF~----~t~~~~~~~~~~L~~~~~~v~~~h-~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~rG 139 (140)
+|+|. ||.+-|+.+++.|.+.|+.+..+. .+.+......+++++.+- -.++++|+....|
T Consensus 269 ~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~-~~ivlGspT~~~~ 333 (410)
T 4dik_A 269 TVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDS-EALIFGVSTYEAE 333 (410)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTC-SEEEEEECCTTSS
T ss_pred eeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhC-CeEEEEeCCcCCc
Confidence 35555 567778888888888898765442 233333444566655432 2467777755444
No 365
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=44.23 E-value=61 Score=20.79 Aligned_cols=59 Identities=7% Similarity=-0.044 Sum_probs=40.9
Q ss_pred CCcEEEEeCchHH---HHHHHHHHHhcCce--EEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQR---VELLAKKITELGYC--CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~---~~~~~~~L~~~~~~--v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++.|++-+.++ +++.+..|+..|++ +......-.++.-.+..+...+..++++|+--
T Consensus 7 ~~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 70 (174)
T 3lp6_A 7 RPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGA 70 (174)
T ss_dssp CCSEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 3457777766554 67888888888763 45555555677777777878777788888754
No 366
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=44.02 E-value=43 Score=18.93 Aligned_cols=75 Identities=9% Similarity=-0.024 Sum_probs=42.9
Q ss_pred EEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhc-CceEEEEecCCCH-HHHHHHHHHhhc--CCccEE
Q psy13287 56 AFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL-GYCCYYIHARMAQ-AHRNRVFHDFRS--GLCRNL 130 (140)
Q Consensus 56 ~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~-~~~v~~~h~~~~~-~~R~~~~~~f~~--g~~~vl 130 (140)
+.+++ ..-...+...+... ... ++.+.+..+ ..+.+.+. ...+..+--.++. ..-...++.++. ..+.++
T Consensus 9 livdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~---a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii 83 (132)
T 2rdm_A 9 LLADDEAILLLDFESTLTDA-GFL-VTAVSSGAK---AIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIV 83 (132)
T ss_dssp EEECSSHHHHHHHHHHHHHT-TCE-EEEESSHHH---HHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEE
T ss_pred EEEcCcHHHHHHHHHHHHHc-CCE-EEEECCHHH---HHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 33443 34456677777753 233 334554444 34455555 6778787766664 444556666653 367888
Q ss_pred EEecc
Q psy13287 131 VCSGD 135 (140)
Q Consensus 131 v~T~~ 135 (140)
+.|+-
T Consensus 84 ~~s~~ 88 (132)
T 2rdm_A 84 YISGH 88 (132)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 88764
No 367
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=44.00 E-value=73 Score=21.58 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=10.8
Q ss_pred HHHHHHHhcCceEEEEecC
Q psy13287 91 LLAKKITELGYCCYYIHAR 109 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~ 109 (140)
...+.|...++...++.+.
T Consensus 54 ~~l~~l~~~~vdgIi~~~~ 72 (296)
T 2hqb_A 54 RRIKELVDGGVNLIFGHGH 72 (296)
T ss_dssp HHHHHHHHTTCCEEEECST
T ss_pred HHHHHHHHCCCCEEEEcCH
Confidence 3444555557776666653
No 368
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=43.92 E-value=75 Score=21.76 Aligned_cols=17 Identities=0% Similarity=-0.095 Sum_probs=8.5
Q ss_pred HHHHHhcCceEEEEecC
Q psy13287 93 AKKITELGYCCYYIHAR 109 (140)
Q Consensus 93 ~~~L~~~~~~v~~~h~~ 109 (140)
.+.|...++.-..+.+.
T Consensus 107 ~~~l~~~~vdgiI~~~~ 123 (340)
T 1qpz_A 107 LSMMAQKRVDGLLVMCS 123 (340)
T ss_dssp HHHHHHTTCSEEEECCS
T ss_pred HHHHHcCCCCEEEEeCC
Confidence 44444556654555443
No 369
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=43.74 E-value=77 Score=21.82 Aligned_cols=12 Identities=0% Similarity=-0.546 Sum_probs=5.0
Q ss_pred eEEEEecCCCHH
Q psy13287 102 CCYYIHARMAQA 113 (140)
Q Consensus 102 ~v~~~h~~~~~~ 113 (140)
.+..-.|+.+..
T Consensus 74 pviaGvg~~~t~ 85 (294)
T 3b4u_A 74 RIVTGVLVDSIE 85 (294)
T ss_dssp GEEEEECCSSHH
T ss_pred cEEEeCCCccHH
Confidence 344444444433
No 370
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=43.72 E-value=56 Score=20.24 Aligned_cols=106 Identities=17% Similarity=0.156 Sum_probs=61.2
Q ss_pred HHHhhCCC-CCeEEEEEecC-chhHHHHHHHhccCCcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhC--CCCcE
Q psy13287 4 HVISILPH-ERQILLYSATF-PLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKL--QINQS 79 (140)
Q Consensus 4 ~il~~~~~-~~q~v~~SAT~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~ 79 (140)
++++.+.. +.++.++|... ...+....+.+--... ....+ +....|...+..+++.. ++..+
T Consensus 75 e~L~~L~~~G~~v~ivT~~~~~~~~~~~l~~~gl~~~------------f~~~~--~~~~~k~~~~~~~~~~~~~~~~~~ 140 (187)
T 2wm8_A 75 EVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRY------------FVHRE--IYPGSKITHFERLQQKTGIPFSQM 140 (187)
T ss_dssp HHHHHHHHHTCCEEEEECCSCHHHHHHHHHHTTCTTT------------EEEEE--ESSSCHHHHHHHHHHHHCCCGGGE
T ss_pred HHHHHHHHCCceEEEEeCCCChHHHHHHHHHcCcHhh------------cceeE--EEeCchHHHHHHHHHHcCCChHHE
Confidence 44444433 46777888776 3555555443211111 11111 12235666777777665 35567
Q ss_pred EEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCc
Q psy13287 80 IIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLC 127 (140)
Q Consensus 80 lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~ 127 (140)
+++=.+..+++. .+..|+.+..+..+...++-...+..|.....
T Consensus 141 ~~igD~~~Di~~----a~~aG~~~i~v~~g~~~~~~~~~l~~~~~~~~ 184 (187)
T 2wm8_A 141 IFFDDERRNIVD----VSKLGVTCIHIQNGMNLQTLSQGLETFAKAQT 184 (187)
T ss_dssp EEEESCHHHHHH----HHTTTCEEEECSSSCCHHHHHHHHHHHHHTC-
T ss_pred EEEeCCccChHH----HHHcCCEEEEECCCCChHHHHHHHHHHHHhcc
Confidence 777777655443 34569998888888777777777777776543
No 371
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=43.69 E-value=68 Score=21.82 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=40.2
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCC--CHHHHHHHHHHhhcCCccEEEEe
Q psy13287 77 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARM--AQAHRNRVFHDFRSGLCRNLVCS 133 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~--~~~~R~~~~~~f~~g~~~vlv~T 133 (140)
..++|+|.+...+.+....+-+.|..+.....+- +++.++.+.+.-+.|..++.+.+
T Consensus 61 pD~VVe~A~~~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpS 119 (253)
T 1j5p_A 61 VSTVVECASPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPS 119 (253)
T ss_dssp CCEEEECSCHHHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCC
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecC
Confidence 3588999988888876666666788877776542 56667777777777777765544
No 372
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=43.65 E-value=71 Score=21.38 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=42.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhh--cCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~--~g~~~vlv~T~ 134 (140)
.-++++...+.+..+++.+.++..+.++..+..++...+ -...++.+. .|.+++||..-
T Consensus 50 G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nA 111 (271)
T 4ibo_A 50 GARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGIDVDILVNNA 111 (271)
T ss_dssp TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCCCCEEEECC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEEEECC
Confidence 345666667777788888889888888888999986543 444444443 37899998754
No 373
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=43.49 E-value=41 Score=18.62 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=33.0
Q ss_pred CCCcEEEEeC--chHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHh
Q psy13287 75 QINQSIIFCN--STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDF 122 (140)
Q Consensus 75 ~~~~~lIF~~--t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f 122 (140)
+.++.+||+| +.+++.++.+.-++.|.....+.+.- +++-......|
T Consensus 50 ngkplvvfvngasqndvnefqneakkegvsydvlkstd-peeltqrvref 98 (112)
T 2lnd_A 50 NGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTD-PEELTQRVREF 98 (112)
T ss_dssp CCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCC-HHHHHHHHHHH
T ss_pred cCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCC-HHHHHHHHHHH
Confidence 4567889996 57778888888888898887777754 44433444444
No 374
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=43.47 E-value=70 Score=23.08 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=25.5
Q ss_pred HHHHHhhCCCCcEEEEeCchH---HHHHHHHHHHhcCceE--EEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 67 LNTLFSKLQINQSIIFCNSTQ---RVELLAKKITELGYCC--YYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 67 l~~ll~~~~~~~~lIF~~t~~---~~~~~~~~L~~~~~~v--~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
+.+.++... ++++|.+...- ..+++.+.|.+ ++.+ ..+.++-+.+.=.+..+.+++.+.+++|+
T Consensus 44 l~~~l~~~g-~r~liVtd~~~~~~~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIa 112 (387)
T 3uhj_A 44 LAAYLAPLG-KRALVLIDRVLFDALSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVG 112 (387)
T ss_dssp THHHHGGGC-SEEEEEECTTTHHHHHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHcC-CEEEEEECchHHHHHHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEE
Confidence 333444433 45555553211 12334444544 5543 22334444444455555555555555554
No 375
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=43.41 E-value=70 Score=21.25 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=14.9
Q ss_pred hcCceEEEEecCC--CHHHHHHHHHHhhcCCccEEE
Q psy13287 98 ELGYCCYYIHARM--AQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 98 ~~~~~v~~~h~~~--~~~~R~~~~~~f~~g~~~vlv 131 (140)
+.|+.+..+..+- +.+.....++.+...+++.+|
T Consensus 33 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgii 68 (304)
T 3o1i_D 33 KQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAII 68 (304)
T ss_dssp HHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEE
T ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3344444444443 333444444444444444444
No 376
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=43.40 E-value=80 Score=21.91 Aligned_cols=13 Identities=0% Similarity=-0.297 Sum_probs=5.4
Q ss_pred ceEEEEecCCCHH
Q psy13287 101 YCCYYIHARMAQA 113 (140)
Q Consensus 101 ~~v~~~h~~~~~~ 113 (140)
.++..=.|+.+..
T Consensus 82 vpViaGvg~~st~ 94 (306)
T 1o5k_A 82 IPVIVGAGTNSTE 94 (306)
T ss_dssp SCEEEECCCSCHH
T ss_pred CeEEEcCCCccHH
Confidence 3444444444433
No 377
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=43.39 E-value=69 Score=21.17 Aligned_cols=59 Identities=10% Similarity=0.151 Sum_probs=43.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhh--cCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~--~g~~~vlv~T~ 134 (140)
..++++...+.+..+.+.+.+...+.++..+..+++..+ -...++.+. .|.+++||..-
T Consensus 53 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~A 114 (262)
T 3rkr_A 53 GARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNA 114 (262)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 446777777888888899999888888999999986443 444444443 27899999765
No 378
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=43.37 E-value=67 Score=20.98 Aligned_cols=59 Identities=14% Similarity=0.062 Sum_probs=41.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhh--cCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~--~g~~~vlv~T~ 134 (140)
..++++...+.+..+.+.+.+...+.++..+..++...+ -...++... .|.+++||..-
T Consensus 33 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~A 94 (253)
T 3qiv_A 33 GAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNA 94 (253)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 345777777788888888888887778888888876443 344444443 26889888754
No 379
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=43.11 E-value=77 Score=21.62 Aligned_cols=12 Identities=0% Similarity=-0.366 Sum_probs=4.6
Q ss_pred HHhcCceEEEEe
Q psy13287 96 ITELGYCCYYIH 107 (140)
Q Consensus 96 L~~~~~~v~~~h 107 (140)
|...++.-..+.
T Consensus 115 l~~~~vdgiI~~ 126 (332)
T 2o20_A 115 FLSKQVDGIVYM 126 (332)
T ss_dssp HHHTTCSEEEEC
T ss_pred HHhCCCCEEEEe
Confidence 333344433333
No 380
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=42.88 E-value=74 Score=21.38 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=40.7
Q ss_pred CCcEEEEe-CchHHHHHHHHHHHhcCceEEEEecCCCHH-HHHHHHHHhh--cCCccEEEEec
Q psy13287 76 INQSIIFC-NSTQRVELLAKKITELGYCCYYIHARMAQA-HRNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~-~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~-~R~~~~~~f~--~g~~~vlv~T~ 134 (140)
..++++.. .+.+..+.+.+.+...+.++.++..++... .-...++... .|.+++||..-
T Consensus 53 G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA 115 (280)
T 4da9_A 53 GFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNA 115 (280)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 34555555 567778888888888888899999998644 3344444443 27899999764
No 381
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=42.87 E-value=72 Score=22.28 Aligned_cols=14 Identities=0% Similarity=-0.304 Sum_probs=6.8
Q ss_pred ceEEEEecCCCHHH
Q psy13287 101 YCCYYIHARMAQAH 114 (140)
Q Consensus 101 ~~v~~~h~~~~~~~ 114 (140)
..+..-.|..+..+
T Consensus 93 vpViaGvg~~st~e 106 (314)
T 3qze_A 93 IPVIAGTGANSTRE 106 (314)
T ss_dssp SCEEEECCCSSHHH
T ss_pred CcEEEeCCCcCHHH
Confidence 44555445544444
No 382
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=42.72 E-value=81 Score=22.22 Aligned_cols=13 Identities=0% Similarity=-0.281 Sum_probs=5.7
Q ss_pred ceEEEEecCCCHH
Q psy13287 101 YCCYYIHARMAQA 113 (140)
Q Consensus 101 ~~v~~~h~~~~~~ 113 (140)
..+..=.|+.+..
T Consensus 104 vpViaGvg~~st~ 116 (332)
T 2r8w_A 104 RTLMAGIGALRTD 116 (332)
T ss_dssp SEEEEEECCSSHH
T ss_pred CcEEEecCCCCHH
Confidence 3444444444433
No 383
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=42.56 E-value=54 Score=19.74 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=38.2
Q ss_pred CcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhC---CCCc-EEEEeCc-----hHHHHHHHHHHH
Q psy13287 37 PYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKL---QINQ-SIIFCNS-----TQRVELLAKKIT 97 (140)
Q Consensus 37 ~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~---~~~~-~lIF~~t-----~~~~~~~~~~L~ 97 (140)
|.+++..+....|.+......++.+..+..+..+|++. ++.+ ..+|||. ...+.++++..+
T Consensus 38 PVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~k 107 (125)
T 3m95_A 38 PVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHH 107 (125)
T ss_dssp EEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHC
T ss_pred EEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcC
Confidence 34444445455666776666778888888888888654 3444 5688864 233455666664
No 384
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=42.52 E-value=46 Score=18.93 Aligned_cols=75 Identities=12% Similarity=0.065 Sum_probs=43.5
Q ss_pred EEcCcc-chHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccEEEE
Q psy13287 56 AFVQER-QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLVC 132 (140)
Q Consensus 56 ~~~~~~-~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vlv~ 132 (140)
..++++ .-...+...+... ... +..+.+..++. +.+....+.+..+--.++...-...++.++. ..+.+++.
T Consensus 7 livdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~a~---~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (136)
T 1mvo_A 7 LVVDDEESIVTLLQYNLERS-GYD-VITASDGEEAL---KKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILML 81 (136)
T ss_dssp EEECSCHHHHHHHHHHHHHT-TCE-EEEESSHHHHH---HHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEECCHHHHHHHHHHHHHC-CcE-EEEecCHHHHH---HHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 344433 3455667777663 233 44555555444 3455556778777776665445566666664 35678777
Q ss_pred ecc
Q psy13287 133 SGD 135 (140)
Q Consensus 133 T~~ 135 (140)
|+.
T Consensus 82 s~~ 84 (136)
T 1mvo_A 82 TAK 84 (136)
T ss_dssp ECT
T ss_pred ECC
Confidence 763
No 385
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=42.46 E-value=82 Score=21.78 Aligned_cols=14 Identities=0% Similarity=-0.370 Sum_probs=6.4
Q ss_pred ceEEEEecCCCHHH
Q psy13287 101 YCCYYIHARMAQAH 114 (140)
Q Consensus 101 ~~v~~~h~~~~~~~ 114 (140)
..+..=.|+.+..+
T Consensus 82 vpViaGvg~~~t~~ 95 (301)
T 1xky_A 82 VPVIAGTGSNNTHA 95 (301)
T ss_dssp SCEEEECCCSCHHH
T ss_pred ceEEeCCCCCCHHH
Confidence 34444444444443
No 386
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=42.38 E-value=3.9 Score=27.87 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=37.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHhcCceE---EEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 74 LQINQSIIFCNSTQRVELLAKKITELGYCC---YYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 74 ~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v---~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.+..++++++. ....+.+.+.|++.|..| ..|.-...........+.+..|++++++-|+
T Consensus 139 ~~g~~vLi~rg-~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS 201 (269)
T 3re1_A 139 VPGSRVLIMRG-NEGRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSS 201 (269)
T ss_dssp SSSCEEEEEEC-SSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEECSS
T ss_pred CCCCEEEEEcc-CccHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEEEcC
Confidence 34566777664 445678999999998864 2333222221122344567778899888876
No 387
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=42.36 E-value=58 Score=20.00 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=15.0
Q ss_pred CchHHHHHHHHHHHhcCceEEEEec
Q psy13287 84 NSTQRVELLAKKITELGYCCYYIHA 108 (140)
Q Consensus 84 ~t~~~~~~~~~~L~~~~~~v~~~h~ 108 (140)
||..-|+.+++.|...|..+..+.-
T Consensus 17 nT~~iA~~ia~~l~~~g~~v~~~~~ 41 (159)
T 3fni_A 17 YSDRLAQAIINGITKTGVGVDVVDL 41 (159)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4556666666666666666555543
No 388
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=42.35 E-value=75 Score=21.29 Aligned_cols=14 Identities=7% Similarity=0.007 Sum_probs=5.7
Q ss_pred HHHHhcCceEEEEe
Q psy13287 94 KKITELGYCCYYIH 107 (140)
Q Consensus 94 ~~L~~~~~~v~~~h 107 (140)
+.+...++.-..+.
T Consensus 77 ~~l~~~~vdgiIi~ 90 (305)
T 3huu_A 77 TMIQSKSVDGFILL 90 (305)
T ss_dssp HHHHTTCCSEEEES
T ss_pred HHHHhCCCCEEEEe
Confidence 33334444433333
No 389
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=42.14 E-value=84 Score=21.78 Aligned_cols=34 Identities=12% Similarity=-0.160 Sum_probs=14.0
Q ss_pred ceEEEEecCCCHHHHHHHHHHhhc-CCccEEEEec
Q psy13287 101 YCCYYIHARMAQAHRNRVFHDFRS-GLCRNLVCSG 134 (140)
Q Consensus 101 ~~v~~~h~~~~~~~R~~~~~~f~~-g~~~vlv~T~ 134 (140)
.++..-.|+.+..+=.+..+...+ |---+|+.++
T Consensus 86 vpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P 120 (304)
T 3cpr_A 86 AKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTP 120 (304)
T ss_dssp SEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 445555555554443333333332 3333444444
No 390
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=42.14 E-value=4.4 Score=26.88 Aligned_cols=59 Identities=10% Similarity=0.069 Sum_probs=36.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHhcCceE---EEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 74 LQINQSIIFCNSTQRVELLAKKITELGYCC---YYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 74 ~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v---~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
....++++++. ....+.+.+.|++.|..+ ..|.-...... ....+.+..++.++++-|+
T Consensus 108 ~~~~~vL~~rg-~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-~~~~~~l~~~~~d~v~ftS 169 (229)
T 3p9z_A 108 LEKKSVLYLRA-KEIVSSLDTILLEHGIDFKQAVVYENKLKHLT-LSEQNALKPKEKSILIFTA 169 (229)
T ss_dssp HTTCEEEEEEE-SSCSSCHHHHHHHTTCEEEEEEEEEEEECCCC-HHHHHHHSCCTTCEEEECS
T ss_pred CCCCEEEEECC-ccchHHHHHHHHHCCCeEEEEEEEEeeCCCcc-HHHHHHHhcCCCeEEEEEC
Confidence 34556666664 445678899999998764 22322211111 1335677889999988886
No 391
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=42.10 E-value=65 Score=21.41 Aligned_cols=37 Identities=0% Similarity=-0.106 Sum_probs=16.8
Q ss_pred HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 92 LAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
..+.+...++.-..+.+..... ..++.+++..+.+++
T Consensus 59 ~~~~l~~~~vdgiIi~~~~~~~---~~~~~l~~~~iPvV~ 95 (290)
T 2rgy_A 59 AVRFLIGRDCDGVVVISHDLHD---EDLDELHRMHPKMVF 95 (290)
T ss_dssp HHHHHHHTTCSEEEECCSSSCH---HHHHHHHHHCSSEEE
T ss_pred HHHHHHhcCccEEEEecCCCCH---HHHHHHhhcCCCEEE
Confidence 4445555566555554432222 234444443455443
No 392
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=42.09 E-value=51 Score=19.24 Aligned_cols=76 Identities=13% Similarity=0.185 Sum_probs=44.6
Q ss_pred EEEEcCcc-chHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc------CC
Q psy13287 54 YYAFVQER-QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS------GL 126 (140)
Q Consensus 54 ~~~~~~~~-~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~------g~ 126 (140)
.+..++++ .-...+..++... ...+ +.+.+.++ ..+.+....+.+..+--.|+...-.+.++.++. ..
T Consensus 16 ~iLivdd~~~~~~~l~~~L~~~-g~~v-~~~~~~~~---al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~ 90 (143)
T 3m6m_D 16 RMLVADDHEANRMVLQRLLEKA-GHKV-LCVNGAEQ---VLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRY 90 (143)
T ss_dssp EEEEECSSHHHHHHHHHHHHC---CEE-EEESSHHH---HHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCC
T ss_pred eEEEEeCCHHHHHHHHHHHHHc-CCeE-EEeCCHHH---HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCC
Confidence 34445543 3456677777653 2333 34444443 444556667888888877776666666666652 23
Q ss_pred ccEEEEec
Q psy13287 127 CRNLVCSG 134 (140)
Q Consensus 127 ~~vlv~T~ 134 (140)
+.+++.|.
T Consensus 91 ~pii~~s~ 98 (143)
T 3m6m_D 91 TPVVVLSA 98 (143)
T ss_dssp CCEEEEES
T ss_pred CeEEEEeC
Confidence 67888776
No 393
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=42.08 E-value=73 Score=21.07 Aligned_cols=38 Identities=5% Similarity=0.053 Sum_probs=17.6
Q ss_pred HHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 95 KITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 95 ~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
.+.+.|+.+..+..+-+.+.....++.+...+++.+|.
T Consensus 32 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~ 69 (288)
T 2qu7_A 32 ECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIIL 69 (288)
T ss_dssp HHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEE
Confidence 33344555544444444444444455555444554443
No 394
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=41.94 E-value=78 Score=22.46 Aligned_cols=12 Identities=0% Similarity=-0.297 Sum_probs=4.9
Q ss_pred eEEEEecCCCHH
Q psy13287 102 CCYYIHARMAQA 113 (140)
Q Consensus 102 ~v~~~h~~~~~~ 113 (140)
.+..=.|+.+..
T Consensus 102 pViaGvg~~st~ 113 (343)
T 2v9d_A 102 PVLIGTGGTNAR 113 (343)
T ss_dssp CEEEECCSSCHH
T ss_pred cEEEecCCCCHH
Confidence 344444444433
No 395
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=41.84 E-value=66 Score=20.52 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=40.5
Q ss_pred CcEEEEeCchHH---HHHHHHHHHhcCce--EEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQR---VELLAKKITELGYC--CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~---~~~~~~~L~~~~~~--v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++.|.+-+.++ +++.+..|+..|++ +......-.++.-.+..+...+..++++|+--
T Consensus 7 ~~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 69 (169)
T 3trh_A 7 IFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAA 69 (169)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CcEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 456677766544 67888888888664 44454555677777777888777788888754
No 396
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=41.76 E-value=77 Score=21.25 Aligned_cols=39 Identities=10% Similarity=0.167 Sum_probs=16.7
Q ss_pred HHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 93 AKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 93 ~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
.+.|...++.-..+.+..... -...++.+....+.+++.
T Consensus 51 i~~l~~~~vdgiIi~~~~~~~-~~~~~~~~~~~~iPvV~~ 89 (306)
T 2vk2_A 51 VRSFVAQGVDAIFIAPVVATG-WEPVLKEAKDAEIPVFLL 89 (306)
T ss_dssp HHHHHHHTCSEEEECCSSSSS-CHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHcCCCEEEEeCCChhh-HHHHHHHHHHCCCCEEEe
Confidence 344444456544554432211 012344455445665443
No 397
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=41.73 E-value=83 Score=21.59 Aligned_cols=13 Identities=0% Similarity=-0.332 Sum_probs=5.6
Q ss_pred ceEEEEecCCCHH
Q psy13287 101 YCCYYIHARMAQA 113 (140)
Q Consensus 101 ~~v~~~h~~~~~~ 113 (140)
..+..-.|+.+..
T Consensus 70 ~pviaGvg~~~t~ 82 (289)
T 2yxg_A 70 VQVIAGAGSNCTE 82 (289)
T ss_dssp SEEEEECCCSSHH
T ss_pred CcEEEeCCCCCHH
Confidence 3444444444433
No 398
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=41.68 E-value=83 Score=21.63 Aligned_cols=34 Identities=12% Similarity=-0.082 Sum_probs=14.2
Q ss_pred ceEEEEecCCCHHHHHHHHHHhhc-CCccEEEEec
Q psy13287 101 YCCYYIHARMAQAHRNRVFHDFRS-GLCRNLVCSG 134 (140)
Q Consensus 101 ~~v~~~h~~~~~~~R~~~~~~f~~-g~~~vlv~T~ 134 (140)
.++..-.|+.+..+=.+..+...+ |---+|+.++
T Consensus 70 vpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 104 (294)
T 2ehh_A 70 IKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVP 104 (294)
T ss_dssp SEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 445555555554443333333332 3333444444
No 399
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=41.68 E-value=41 Score=18.04 Aligned_cols=48 Identities=4% Similarity=0.013 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHhcCceEEEEecC-----CCHHHHHHHHHHhhcC-----CccEEEE
Q psy13287 85 STQRVELLAKKITELGYCCYYIHAR-----MAQAHRNRVFHDFRSG-----LCRNLVC 132 (140)
Q Consensus 85 t~~~~~~~~~~L~~~~~~v~~~h~~-----~~~~~R~~~~~~f~~g-----~~~vlv~ 132 (140)
+...|.++.+.|++.++....+.=+ .+++.+.+..+..-.. .+..++.
T Consensus 13 ~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i 70 (87)
T 1aba_A 13 KCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA 70 (87)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC
T ss_pred cCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEE
Confidence 4567888888999888877666655 5566666666555444 4555553
No 400
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=41.60 E-value=84 Score=21.61 Aligned_cols=14 Identities=0% Similarity=-0.199 Sum_probs=6.4
Q ss_pred ceEEEEecCCCHHH
Q psy13287 101 YCCYYIHARMAQAH 114 (140)
Q Consensus 101 ~~v~~~h~~~~~~~ 114 (140)
..+..-.|+.+..+
T Consensus 74 vpviaGvg~~~t~~ 87 (293)
T 1f6k_A 74 IALIAQVGSVNLKE 87 (293)
T ss_dssp SEEEEECCCSCHHH
T ss_pred CeEEEecCCCCHHH
Confidence 34444444544443
No 401
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=41.48 E-value=82 Score=21.46 Aligned_cols=42 Identities=7% Similarity=0.207 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 90 ELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 90 ~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
+.+.+.+.+.|+.+..+..+-+.+.....++.+....++.+|
T Consensus 80 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI 121 (330)
T 3ctp_A 80 SVIEEYAKNKGYTLFLCNTDDDKEKEKTYLEVLQSHRVAGII 121 (330)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEE
Confidence 344445555677766666555555555666667666677666
No 402
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=41.18 E-value=85 Score=21.56 Aligned_cols=13 Identities=0% Similarity=-0.366 Sum_probs=5.5
Q ss_pred ceEEEEecCCCHH
Q psy13287 101 YCCYYIHARMAQA 113 (140)
Q Consensus 101 ~~v~~~h~~~~~~ 113 (140)
.++..-.|+.+..
T Consensus 71 ~pviaGvg~~~t~ 83 (291)
T 3tak_A 71 IPIIAGTGANSTR 83 (291)
T ss_dssp SCEEEECCCSSHH
T ss_pred CeEEEeCCCCCHH
Confidence 3444444444433
No 403
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=40.91 E-value=56 Score=19.37 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=40.2
Q ss_pred HHHHHHHhhCC---CCcEEEEeCchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 65 HCLNTLFSKLQ---INQSIIFCNSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 65 ~~l~~ll~~~~---~~~~lIF~~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
..|.-++.... .++-++|++.... -.+..|...|+ ++..++..-+.+.-...++.++.|.+..+|+
T Consensus 18 ~lLlp~L~~l~~~~~~r~ilwi~pp~~--~~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~ 89 (119)
T 1ofu_X 18 TLLAPILRELSEEQDARWLTLIAPPAS--LTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVS 89 (119)
T ss_dssp HHHHHHHHHHTTCSSSSEEEEESCCTT--SCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHhcccccCccEEEECCCCC--CCHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEE
Confidence 34455555543 4566777755321 22445555555 4777777766666777777777777777776
No 404
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=40.88 E-value=74 Score=22.14 Aligned_cols=14 Identities=0% Similarity=-0.152 Sum_probs=6.1
Q ss_pred ceEEEEecCCCHHH
Q psy13287 101 YCCYYIHARMAQAH 114 (140)
Q Consensus 101 ~~v~~~h~~~~~~~ 114 (140)
..+..--|+.+..+
T Consensus 78 vpviaGvg~~~t~~ 91 (309)
T 3fkr_A 78 VPVIVTTSHYSTQV 91 (309)
T ss_dssp SCEEEECCCSSHHH
T ss_pred CcEEEecCCchHHH
Confidence 34444444444443
No 405
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=40.88 E-value=81 Score=21.25 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=42.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHH-HHHHHHHHhh--cCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQA-HRNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~-~R~~~~~~f~--~g~~~vlv~T~ 134 (140)
.-++++...+.+..+++++.+...+.++..+..++... .-...++... .|.+++||..-
T Consensus 52 G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA 113 (283)
T 3v8b_A 52 GVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANA 113 (283)
T ss_dssp TCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 44677777778888888888888788888999998654 3344444443 27899998754
No 406
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=40.61 E-value=71 Score=21.32 Aligned_cols=56 Identities=4% Similarity=-0.176 Sum_probs=23.3
Q ss_pred CCcEEEEeCchHHHHH---HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 76 INQSIIFCNSTQRVEL---LAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~---~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
...+++++++..+.+. ..+.+...++.-..+.+..+. .-...++.+.+..+.+++.
T Consensus 34 g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-~~~~~~~~~~~~~iPvV~~ 92 (305)
T 3g1w_A 34 NVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPV-ELTDTINKAVDAGIPIVLF 92 (305)
T ss_dssp TCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTT-TTHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHH-HHHHHHHHHHHCCCcEEEE
Confidence 3444554544333332 223333345554455443222 1123345555545555443
No 407
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=40.56 E-value=77 Score=20.93 Aligned_cols=40 Identities=10% Similarity=-0.003 Sum_probs=18.9
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
...+.+...++.-..+.+...... ...++.+++..+.+++
T Consensus 49 ~~~~~l~~~~vdgiI~~~~~~~~~-~~~~~~~~~~~iPvV~ 88 (290)
T 2fn9_A 49 AHFDAIIAAGYDAIIFNPTDADGS-IANVKRAKEAGIPVFC 88 (290)
T ss_dssp HHHHHHHHTTCSEEEECCSCTTTT-HHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHcCCCEEEEecCChHHH-HHHHHHHHHCCCeEEE
Confidence 344455455666555555332211 1234555555566544
No 408
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=40.43 E-value=88 Score=21.60 Aligned_cols=7 Identities=29% Similarity=0.282 Sum_probs=2.7
Q ss_pred HHhcCce
Q psy13287 96 ITELGYC 102 (140)
Q Consensus 96 L~~~~~~ 102 (140)
|...++.
T Consensus 118 l~~~~vd 124 (348)
T 3bil_A 118 LTSHGVD 124 (348)
T ss_dssp HHHTTCS
T ss_pred HHhCCCC
Confidence 3333443
No 409
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=40.39 E-value=59 Score=21.22 Aligned_cols=40 Identities=10% Similarity=-0.002 Sum_probs=17.7
Q ss_pred HHHHHHhcC-ceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 92 LAKKITELG-YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 92 ~~~~L~~~~-~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
..+.+...+ +.-..+.+..+ ..-...++.+.+..+.+++.
T Consensus 50 ~i~~l~~~~~vdgii~~~~~~-~~~~~~~~~~~~~~ipvV~~ 90 (276)
T 3ksm_A 50 ILSYHLSQAPPDALILAPNSA-EDLTPSVAQYRARNIPVLVV 90 (276)
T ss_dssp HHHHHHHHSCCSEEEECCSST-TTTHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhCCCCEEEEeCCCH-HHHHHHHHHHHHCCCcEEEE
Confidence 334444445 66555555211 11123445555555555443
No 410
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=40.30 E-value=82 Score=21.12 Aligned_cols=59 Identities=10% Similarity=-0.079 Sum_probs=42.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhh--cCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~--~g~~~vlv~T~ 134 (140)
.-++++...+.+..+.+.+.++..+.++..+..++...+ -...++... .|.+++||..-
T Consensus 48 G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA 109 (279)
T 3sju_A 48 GIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSA 109 (279)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCSCCEEEECC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence 445677777788888899999888888999999986543 333444432 27899998754
No 411
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=40.28 E-value=73 Score=20.58 Aligned_cols=59 Identities=10% Similarity=-0.019 Sum_probs=41.2
Q ss_pred CCcEEEEeCchHH---HHHHHHHHHhcCce--EEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQR---VELLAKKITELGYC--CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~---~~~~~~~L~~~~~~--v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
..++.|++-+..+ +++.+..|+..|++ +......-.++...+..+...+..++|+|+--
T Consensus 21 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~A 84 (182)
T 1u11_A 21 APVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGA 84 (182)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CCEEEEEECcHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEec
Confidence 3567788866555 77888888888664 44554555577777777777776788888754
No 412
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=40.26 E-value=1e+02 Score=22.18 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHHh
Q psy13287 110 MAQAHRNRVFHDF 122 (140)
Q Consensus 110 ~~~~~R~~~~~~f 122 (140)
++.+||.++++..
T Consensus 109 Ls~eEr~~vi~~~ 121 (360)
T 4dpp_A 109 MSWDEHIMLIGHT 121 (360)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3444444444433
No 413
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9
Probab=40.15 E-value=26 Score=23.89 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 87 QRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 87 ~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+.++++.+.| +..+=+..+|++.+.+.+ .+..+-+|.++++|.|-
T Consensus 129 ~~~~~~v~~l-~~d~IIv~~H~e~t~Ek~--~la~~~dg~vd~VvGgH 173 (255)
T 1t70_A 129 RTMDALLERD-DLGTVFVDFHAEATSEKE--AMGWHLAGRVAAVIGTH 173 (255)
T ss_dssp HHHHHHTTCS-SCCEEEEEEECSCHHHHH--HHHHHHTTSSSEEEEES
T ss_pred HHHHHHHHHh-CCCEEEEEeCCCChHHHH--HHHHhCCCCeEEEEeCC
Confidence 4455555555 334557889998755533 35556778899999863
No 414
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=40.14 E-value=42 Score=17.80 Aligned_cols=35 Identities=14% Similarity=0.450 Sum_probs=25.4
Q ss_pred HHHHHHHHhhC----------CCCcEEEEeCchHHHHHHHHHHHh
Q psy13287 64 VHCLNTLFSKL----------QINQSIIFCNSTQRVELLAKKITE 98 (140)
Q Consensus 64 ~~~l~~ll~~~----------~~~~~lIF~~t~~~~~~~~~~L~~ 98 (140)
...+..++++. ..+-++|.|.+.+.++++.+.|++
T Consensus 25 A~~va~~iD~~~~~eI~GTIAGDDTIlvi~r~~~~a~~l~~~i~~ 69 (71)
T 1b4b_A 25 AHAIGVLLDNLDWDEIVGTICGDDTCLIICRTPKDAKKVSNQLLS 69 (71)
T ss_dssp HHHHHHHHHHHCCTTEEEEEECSSEEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCeEEEEeeCCEEEEEECCHHHHHHHHHHHHH
Confidence 44555556544 244578999999999999998865
No 415
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=40.14 E-value=76 Score=20.68 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=34.8
Q ss_pred HHHHHHHHhhCC--CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHH
Q psy13287 64 VHCLNTLFSKLQ--INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHR 115 (140)
Q Consensus 64 ~~~l~~ll~~~~--~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R 115 (140)
.+...++....+ ..++-||+|. +.+.+.+.....+..+..+||+-+++.-
T Consensus 39 ~~~a~~i~~~~~~~~~~VgVfvn~--~~~~i~~~~~~~~ld~vQLHG~e~~~~~ 90 (203)
T 1v5x_A 39 PEAARAIGEALGPFVVRVGVFRDQ--PPEEVLRLMEEARLQVAQLHGEEPPEWA 90 (203)
T ss_dssp HHHHHHHHHHSCSSSEEEEEESSC--CHHHHHHHHHHTTCSEEEECSCCCHHHH
T ss_pred HHHHHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhhCCCEEEECCCCCHHHH
Confidence 355555555554 3457789975 3566677777779999999999887643
No 416
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=40.10 E-value=83 Score=21.93 Aligned_cols=34 Identities=6% Similarity=-0.134 Sum_probs=14.8
Q ss_pred ceEEEEecCCCHHHHHHHHHHhhc-CC-ccEEEEec
Q psy13287 101 YCCYYIHARMAQAHRNRVFHDFRS-GL-CRNLVCSG 134 (140)
Q Consensus 101 ~~v~~~h~~~~~~~R~~~~~~f~~-g~-~~vlv~T~ 134 (140)
..+..-.|+.+..+=.+..+...+ |- --+|+.++
T Consensus 77 vpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P 112 (311)
T 3h5d_A 77 VPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVP 112 (311)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECC
T ss_pred CcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCC
Confidence 445555555554443333333333 43 23444443
No 417
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=40.07 E-value=76 Score=20.73 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=38.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHH-HHHHHHHHhh--cCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQA-HRNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~-~R~~~~~~f~--~g~~~vlv~T~ 134 (140)
...+++.+.+.+..+.+.+.+...+.++.++.+++... .-...++.+. .|.+++||..-
T Consensus 29 g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~A 90 (276)
T 1wma_A 29 SGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNA 90 (276)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSEEEEEECC
T ss_pred CCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 34566777777777777777777666777788887643 3334444443 26788888653
No 418
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=40.03 E-value=81 Score=21.03 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 87 QRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 87 ~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.-...+.+.+.+.|+.+..+..+-+.+.....++.+...+++.+|..+
T Consensus 31 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~ 78 (301)
T 3miz_A 31 DIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVT 78 (301)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 445566677777788888887777777777788888888887766543
No 419
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=39.76 E-value=73 Score=20.42 Aligned_cols=58 Identities=10% Similarity=0.044 Sum_probs=40.8
Q ss_pred CcEEEEeCchHH---HHHHHHHHHhcCce--EEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQR---VELLAKKITELGYC--CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~---~~~~~~~L~~~~~~--v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.++.|.+-+.++ +++.+..|+..|++ +......-.++.-.+..+...+..++++|+--
T Consensus 13 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 75 (174)
T 3kuu_A 13 VKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGN 75 (174)
T ss_dssp CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 356777766554 67888888888764 44555555687777778888777788888754
No 420
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=39.68 E-value=54 Score=18.89 Aligned_cols=76 Identities=5% Similarity=0.010 Sum_probs=43.3
Q ss_pred EEEcCcc-chHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccEEE
Q psy13287 55 YAFVQER-QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLV 131 (140)
Q Consensus 55 ~~~~~~~-~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vlv 131 (140)
++.++++ .-...+..++... ... +..+.+..++. +.+....+.+..+--.++...-...++.++. ..+.+++
T Consensus 7 ILivdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~a~---~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ 81 (137)
T 3cfy_A 7 VLLVEDSTSLAILYKQYVKDE-PYD-IFHVETGRDAI---QFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVII 81 (137)
T ss_dssp EEEECSCTTHHHHHHHHTTTS-SSE-EEEESSHHHHH---HHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHhc-Cce-EEEeCCHHHHH---HHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 3445443 4456677777653 233 44555544443 4445556777777766665445566666664 3567887
Q ss_pred Eecc
Q psy13287 132 CSGD 135 (140)
Q Consensus 132 ~T~~ 135 (140)
.|..
T Consensus 82 ls~~ 85 (137)
T 3cfy_A 82 ATAH 85 (137)
T ss_dssp EESS
T ss_pred EEec
Confidence 7753
No 421
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=39.68 E-value=76 Score=20.60 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=42.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHH-HHHHHHHHhh--cCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQA-HRNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~-~R~~~~~~f~--~g~~~vlv~T~ 134 (140)
..++++...+....+.+.+.++..+.++..+..++... .-...++.+. .|.++++|..-
T Consensus 29 G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~A 90 (247)
T 3lyl_A 29 GATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAIDILVNNA 90 (247)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCCSEEEECC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 44567777777888888888888888888888887543 3444555553 36788888764
No 422
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=39.50 E-value=91 Score=21.43 Aligned_cols=14 Identities=0% Similarity=-0.318 Sum_probs=6.5
Q ss_pred ceEEEEecCCCHHH
Q psy13287 101 YCCYYIHARMAQAH 114 (140)
Q Consensus 101 ~~v~~~h~~~~~~~ 114 (140)
..+..-.|+.+..+
T Consensus 72 vpviaGvg~~~t~~ 85 (292)
T 3daq_A 72 VPVIAGTGTNDTEK 85 (292)
T ss_dssp SCEEEECCCSCHHH
T ss_pred CcEEEeCCcccHHH
Confidence 44544444444443
No 423
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=39.34 E-value=81 Score=20.83 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=35.7
Q ss_pred CcEEEE-eCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhhc--CCccEEEEec
Q psy13287 77 NQSIIF-CNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFRS--GLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF-~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~~--g~~~vlv~T~ 134 (140)
.++++. ....+..+...+.+...+.++..+..++...+ -...++...+ |.+++||..-
T Consensus 33 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 94 (259)
T 3edm_A 33 ANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGEIHGLVHVA 94 (259)
T ss_dssp CEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEECC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 344443 45566667777777777777788888876433 3344444332 7788888654
No 424
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=39.28 E-value=86 Score=21.07 Aligned_cols=58 Identities=9% Similarity=-0.050 Sum_probs=39.7
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC-CccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG-LCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~vlv~T~ 134 (140)
..++|=|.+.+..........+.|..+..-.-+++.++...+.+.-+.+ ...++++++
T Consensus 46 ~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N 104 (245)
T 1p9l_A 46 TEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPN 104 (245)
T ss_dssp CCEEEECSCTTTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSC
T ss_pred CcEEEEccChHHHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECC
Confidence 3477744466777777777777788877766678887665555544544 678888877
No 425
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=39.25 E-value=31 Score=20.64 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=37.6
Q ss_pred CcEEEcCCcccCCCeEEEEEEcCccchHHHHHHHHhhC---CCC-cEEEEeCc-----hHHHHHHHHHHH
Q psy13287 37 PYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKL---QIN-QSIIFCNS-----TQRVELLAKKIT 97 (140)
Q Consensus 37 ~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~---~~~-~~lIF~~t-----~~~~~~~~~~L~ 97 (140)
|.+++..+....|.+......++.+..+..+..+|++. ++. ...+|+|. ...+-++++..+
T Consensus 33 PVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~k 102 (119)
T 3h9d_A 33 PIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYK 102 (119)
T ss_dssp EEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHC
T ss_pred EEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcC
Confidence 34444444455666766666778888888888877654 344 45688874 233455666664
No 426
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=39.24 E-value=81 Score=20.77 Aligned_cols=19 Identities=0% Similarity=-0.106 Sum_probs=9.8
Q ss_pred HHHHHHHhcCceEEEEecC
Q psy13287 91 LLAKKITELGYCCYYIHAR 109 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~ 109 (140)
...+.|...++.-..+.+.
T Consensus 54 ~~~~~l~~~~vdgii~~~~ 72 (289)
T 1dbq_A 54 AYLSMMAQKRVDGLLVMCS 72 (289)
T ss_dssp HHHHHHHHTTCSEEEEECS
T ss_pred HHHHHHHhCCCCEEEEEec
Confidence 3444555556665555543
No 427
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=39.21 E-value=56 Score=22.21 Aligned_cols=45 Identities=11% Similarity=0.213 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEe
Q psy13287 86 TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS 133 (140)
Q Consensus 86 ~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T 133 (140)
-+.++++.+.|+ ..+=+...|++.+.+. ..+..+-.|.++++|.|
T Consensus 125 f~~~~~~v~~lk-~d~IIv~~H~g~tsek--~~la~~~dg~Vd~VvGg 169 (252)
T 2z06_A 125 FRALDRLLEEEK-ADYVLVEVHAEATSEK--MALAHYLDGRASAVLGT 169 (252)
T ss_dssp HHHHHHHHHHCC-CSEEEEEEECSCHHHH--HHHHHHHBTTBSEEEEE
T ss_pred HHHHHHHHHHhC-CCEEEEEeCCCcHHHH--HHHHHhCCCCeEEEEcC
Confidence 445666666666 4555788899876543 35666678999999976
No 428
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=39.09 E-value=95 Score=21.70 Aligned_cols=14 Identities=0% Similarity=-0.180 Sum_probs=6.7
Q ss_pred ceEEEEecCCCHHH
Q psy13287 101 YCCYYIHARMAQAH 114 (140)
Q Consensus 101 ~~v~~~h~~~~~~~ 114 (140)
..+..-.|+.+..+
T Consensus 81 vpviaGvg~~~t~~ 94 (318)
T 3qfe_A 81 FPIMAGVGAHSTRQ 94 (318)
T ss_dssp SCEEEECCCSSHHH
T ss_pred CcEEEeCCCCCHHH
Confidence 44555445544444
No 429
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=39.05 E-value=54 Score=18.69 Aligned_cols=77 Identities=6% Similarity=-0.022 Sum_probs=41.5
Q ss_pred EEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCC-HHHHHHHHHHhhc-CCccEEE
Q psy13287 55 YAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA-QAHRNRVFHDFRS-GLCRNLV 131 (140)
Q Consensus 55 ~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~-~~~R~~~~~~f~~-g~~~vlv 131 (140)
++.+++ ..-...+...+... ...+...+.+..++.. .+.+..+.+..+--.++ ...-...++.++. ..+.+++
T Consensus 12 iLivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~~a~~---~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ 87 (140)
T 3cg0_A 12 VLIVEDGRLAAATLRIQLESL-GYDVLGVFDNGEEAVR---CAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIF 87 (140)
T ss_dssp EEEECCBHHHHHHHHHHHHHH-TCEEEEEESSHHHHHH---HHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEE
T ss_pred EEEEECCHHHHHHHHHHHHHC-CCeeEEEECCHHHHHH---HHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEE
Confidence 344443 34456677777663 2333323555555443 34445677777775554 2333444555543 4678888
Q ss_pred Eecc
Q psy13287 132 CSGD 135 (140)
Q Consensus 132 ~T~~ 135 (140)
.|+.
T Consensus 88 ls~~ 91 (140)
T 3cg0_A 88 ITSS 91 (140)
T ss_dssp EECC
T ss_pred EecC
Confidence 7763
No 430
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=38.83 E-value=50 Score=18.26 Aligned_cols=70 Identities=6% Similarity=0.008 Sum_probs=39.1
Q ss_pred ccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccEEEEec
Q psy13287 60 ERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLVCSG 134 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vlv~T~ 134 (140)
+..-...+...+... ... +..+++..++ .+.+.+....+..+--.++...-...++.++. ..+.+++.|+
T Consensus 12 ~~~~~~~l~~~l~~~-~~~-v~~~~~~~~~---~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1dc7_A 12 DSSIRWVLERALAGA-GLT-CTTFENGNEV---LAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTA 83 (124)
T ss_dssp SSSHHHHHHHHHTTT-TCC-CEECCCTTHH---HHHSSSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCC
T ss_pred CHHHHHHHHHHHHhC-CcE-EEEeCCHHHH---HHHHhcCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEec
Confidence 334456677777653 223 3345554443 34455556677777777776555555555553 3466766665
No 431
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=38.73 E-value=83 Score=22.00 Aligned_cols=14 Identities=0% Similarity=-0.285 Sum_probs=6.8
Q ss_pred ceEEEEecCCCHHH
Q psy13287 101 YCCYYIHARMAQAH 114 (140)
Q Consensus 101 ~~v~~~h~~~~~~~ 114 (140)
..+..-.|+.+..+
T Consensus 92 vpViaGvg~~st~~ 105 (315)
T 3si9_A 92 VPVVAGAGSNSTSE 105 (315)
T ss_dssp SCBEEECCCSSHHH
T ss_pred CcEEEeCCCCCHHH
Confidence 44555445544444
No 432
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=38.57 E-value=73 Score=21.99 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHHh
Q psy13287 110 MAQAHRNRVFHDF 122 (140)
Q Consensus 110 ~~~~~R~~~~~~f 122 (140)
++.+||.++++..
T Consensus 50 Ls~~Er~~v~~~~ 62 (297)
T 2rfg_A 50 LTEEEHKRVVALV 62 (297)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
No 433
>2zfz_A Arginine repressor; DNA binding protein, core, oligomeriza domain, alpha/beta topology, structural genomics; HET: ARG; 1.85A {Mycobacterium tuberculosis} PDB: 3bue_A 3cag_A*
Probab=38.53 E-value=48 Score=17.99 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=24.7
Q ss_pred HHHHHHHHhhC----------CCCcEEEEeCchHHHHHHHHHHHh
Q psy13287 64 VHCLNTLFSKL----------QINQSIIFCNSTQRVELLAKKITE 98 (140)
Q Consensus 64 ~~~l~~ll~~~----------~~~~~lIF~~t~~~~~~~~~~L~~ 98 (140)
...+..++++. ..+-++|.|.+...++.+.+.|++
T Consensus 33 A~~vA~~iD~~~~~eIlGTIAGDDTIlvi~r~~~~a~~l~~~l~~ 77 (79)
T 2zfz_A 33 AHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFEN 77 (79)
T ss_dssp HHHHHHHHHHHCCTTEEEEEECSSEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEEecCCEEEEEECCHHHHHHHHHHHHh
Confidence 44555555544 244567889999999999888865
No 434
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=38.48 E-value=81 Score=20.55 Aligned_cols=49 Identities=10% Similarity=0.013 Sum_probs=33.3
Q ss_pred HHHHHHHHhhCCC--CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH
Q psy13287 64 VHCLNTLFSKLQI--NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH 114 (140)
Q Consensus 64 ~~~l~~ll~~~~~--~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~ 114 (140)
.+...++....++ .++-||+|.. .+.+.+.....+..+..+||+-+++.
T Consensus 40 ~~~a~~i~~~~~~~~~~VgVfvn~~--~~~i~~~~~~~~ld~vQLHG~e~~~~ 90 (205)
T 1nsj_A 40 PEDARRISVELPPFVFRVGVFVNEE--PEKILDVASYVQLNAVQLHGEEPIEL 90 (205)
T ss_dssp HHHHHHHHHHSCSSSEEEEEESSCC--HHHHHHHHHHHTCSEEEECSCCCHHH
T ss_pred HHHHHHHHHhCCCCCCEEEEEeCCC--HHHHHHHHHhhCCCEEEECCCCCHHH
Confidence 3555555555543 4567899653 45666666666889999999987754
No 435
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=38.41 E-value=88 Score=24.09 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=35.5
Q ss_pred CccchHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHhcCceEEEE
Q psy13287 59 QERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITELGYCCYYI 106 (140)
Q Consensus 59 ~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~ 106 (140)
++.-|-..+..++... .+.++||-++|...++.+++.|...+.++.-+
T Consensus 214 PGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRl 263 (646)
T 4b3f_X 214 PGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRL 263 (646)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEe
Confidence 3445766666655443 46789999999999999999998877765444
No 436
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=38.34 E-value=85 Score=20.77 Aligned_cols=51 Identities=8% Similarity=-0.126 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCce--E-EEEecCCCHH-HHHHHHHHhhc-CCccEEEEecccC
Q psy13287 87 QRVELLAKKITELGYC--C-YYIHARMAQA-HRNRVFHDFRS-GLCRNLVCSGDSS 137 (140)
Q Consensus 87 ~~~~~~~~~L~~~~~~--v-~~~h~~~~~~-~R~~~~~~f~~-g~~~vlv~T~~~~ 137 (140)
...+-+.+.|++.+.. + ....++.+.+ ....+.+-++. .+.+.++|++-.+
T Consensus 156 ~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~a 211 (304)
T 3gbv_A 156 SREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSKV 211 (304)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSCT
T ss_pred HHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcch
Confidence 3445556667666543 3 3335544433 34444444443 3688898887433
No 437
>2fkc_A R.HINP1I restriction endonuclease; protein dimerizaton, DNA superhelix, protein-DNA-metal ION complex, hydrolase/DNA complex; 2.39A {Haemophilus influenzae} PDB: 1ynm_A 2fkh_B 2fl3_A 2flc_A
Probab=38.32 E-value=3.2 Score=27.51 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=24.6
Q ss_pred EEecCCCHHHHHHHHHHhhcCCccEEEEecccC-CC
Q psy13287 105 YIHARMAQAHRNRVFHDFRSGLCRNLVCSGDSS-AM 139 (140)
Q Consensus 105 ~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~~-rG 139 (140)
.+--+.+.++|..+++-|.++ ++||-||++- ||
T Consensus 136 mf~~EFs~~Eq~~il~wf~~N--kilvl~DIlrGRG 169 (247)
T 2fkc_A 136 MFMTEFSQEEQNIVLNWLEKN--RVLVLTDILRGRG 169 (247)
T ss_dssp CCGGGSCHHHHHHHHHHHHHT--HHHHHHHHHTCSS
T ss_pred HHHHHhhHHHHHHHHHHHHhC--CceEeHHHhcccc
Confidence 344456788999999999887 6777788765 66
No 438
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=38.32 E-value=55 Score=18.61 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=47.0
Q ss_pred EEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcC-ceEEEEecCCCHHHHHHHHHHhhcC---CccE
Q psy13287 55 YAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELG-YCCYYIHARMAQAHRNRVFHDFRSG---LCRN 129 (140)
Q Consensus 55 ~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~-~~v~~~h~~~~~~~R~~~~~~f~~g---~~~v 129 (140)
++.+++ ..-...+..++... ...+. .+.+..++ ...+.... +.+..+--.++...-...++.++.. .+.+
T Consensus 10 ilivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~a---~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~i 84 (136)
T 3hdv_A 10 VLVVDDNAVNREALILYLKSR-GIDAV-GADGAEEA---RLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSI 84 (136)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-TCCEE-EESSHHHH---HHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEE
T ss_pred EEEECCCHHHHHHHHHHHHHc-CceEE-EeCCHHHH---HHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCE
Confidence 444544 34566777788774 33433 34444433 33444454 7888888887776777788888753 4678
Q ss_pred EEEecc
Q psy13287 130 LVCSGD 135 (140)
Q Consensus 130 lv~T~~ 135 (140)
++.|+-
T Consensus 85 i~~s~~ 90 (136)
T 3hdv_A 85 IVVSGD 90 (136)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 888763
No 439
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=38.00 E-value=42 Score=19.21 Aligned_cols=78 Identities=8% Similarity=-0.006 Sum_probs=44.1
Q ss_pred EEEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccEE
Q psy13287 54 YYAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNL 130 (140)
Q Consensus 54 ~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vl 130 (140)
.++.+++ ..-...+..++....... ++.+.+..++. +.+.+..+.+..+--.++...-.+.++.++. ..+.++
T Consensus 16 ~ilivdd~~~~~~~l~~~L~~~g~~~-v~~~~~~~~a~---~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 91 (135)
T 3snk_A 16 QVALFSSDPNFKRDVATRLDALAIYD-VRVSETDDFLK---GPPADTRPGIVILDLGGGDLLGKPGIVEARALWATVPLI 91 (135)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTSSEE-EEEECGGGGGG---CCCTTCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEE
T ss_pred EEEEEcCCHHHHHHHHHHHhhcCCeE-EEEeccHHHHH---HHHhccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEE
Confidence 3444544 344566777777642133 33455444432 3344556677777666666655566666664 257888
Q ss_pred EEecc
Q psy13287 131 VCSGD 135 (140)
Q Consensus 131 v~T~~ 135 (140)
+.|.-
T Consensus 92 ~~s~~ 96 (135)
T 3snk_A 92 AVSDE 96 (135)
T ss_dssp EEESC
T ss_pred EEeCC
Confidence 88763
No 440
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=37.96 E-value=88 Score=20.82 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=39.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhhc---CCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFRS---GLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~~---g~~~vlv~T~ 134 (140)
..++++...+.+..+.+.+.+...+.++..+..++...+ -...++.... |.+++||..-
T Consensus 45 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~id~lv~nA 107 (273)
T 1ae1_A 45 GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNA 107 (273)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSCCCEEEECC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCcEEEECC
Confidence 345666666667777777888777778888888886443 3444444432 7899998754
No 441
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Probab=37.82 E-value=54 Score=23.00 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=41.5
Q ss_pred CCcEEEE---eCchHHHHHHHHHHHhcCc---eEEEEecCCCHHHHHHHHHHhhcCCccEEEEeccc
Q psy13287 76 INQSIIF---CNSTQRVELLAKKITELGY---CCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGDS 136 (140)
Q Consensus 76 ~~~~lIF---~~t~~~~~~~~~~L~~~~~---~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~~ 136 (140)
.+.+||. +.|-.+....++.|++.|. .+.+.||=++... .+++.+..++-+|+||..
T Consensus 217 gk~VlLVDDiitTG~Tl~~aa~~Lk~~Ga~~V~~~~tH~v~~~~a----~~~l~~~~i~~vv~t~ti 279 (317)
T 1dku_A 217 GKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVLSGPA----VERINNSTIKELVVTNSI 279 (317)
T ss_dssp TCEEEEECSEESSCHHHHHHHHHHHHTTCSEEEEECSEECCCTTH----HHHHHTSSEEEEEEETTS
T ss_pred CCEEEEEecccCCCHHHHHHHHHHHHcCCcEEEEEEECcccChHH----HHHHhhCCCCEEEEeCCc
Confidence 3445543 4788899999999999865 4666677777643 456666779999999964
No 442
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=37.80 E-value=78 Score=20.20 Aligned_cols=59 Identities=10% Similarity=0.000 Sum_probs=40.2
Q ss_pred CCcEEEEeCchHH---HHHHHHHHHhcCce--EEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 76 INQSIIFCNSTQR---VELLAKKITELGYC--CYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~---~~~~~~~L~~~~~~--v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...+.|++-+.++ +++.+..|+..|++ +......-.++.-.+..+...+..++++|+--
T Consensus 11 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~A 74 (170)
T 1xmp_A 11 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGA 74 (170)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3456677766555 77888888888764 44444455577777777777777788888754
No 443
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=37.79 E-value=1.3e+02 Score=22.55 Aligned_cols=58 Identities=7% Similarity=0.006 Sum_probs=42.1
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCC------------HHHHHHHHHHhhcCCccEEEEec
Q psy13287 77 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMA------------QAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~------------~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
-++++-|-.-....-+.+.|++.|+.+..++...+ ++......+..++.+.++.+++|
T Consensus 195 lkIvvD~~~Ga~~~~~~~il~~lG~~v~~~~~~pDg~Fp~~~p~P~~~~~l~~l~~~v~~~~aDlgia~D 264 (485)
T 3uw2_A 195 LKLVVDAGNGVAGPLATRLFKALGCELVELFTDIDGNFPNHHPDPAHPENLQDVIAKLKATDAEIGFAFD 264 (485)
T ss_dssp CCEEEECTTSTHHHHHHHHHHHTTCCEEEESCSCCTTCCSSCSCTTSGGGGHHHHHHHHHSSCCEEEEEC
T ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCeEEEecCccCCCCCCCCcCCCCHHHHHHHHHHHHhhCCCEEEEEC
Confidence 45667776666666777778888999888877633 33455566667778899999988
No 444
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=37.76 E-value=55 Score=18.39 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=47.9
Q ss_pred EEEcCcc-chHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcC----CccE
Q psy13287 55 YAFVQER-QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSG----LCRN 129 (140)
Q Consensus 55 ~~~~~~~-~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g----~~~v 129 (140)
+..++++ .-...+..++... ...+ +.+.+..++ .+.+.+....+..+--.|+...-.+.++.++.. .+.+
T Consensus 5 ILivdd~~~~~~~l~~~l~~~-g~~v-~~~~~~~~a---l~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pi 79 (122)
T 3gl9_A 5 VLLVDDSAVLRKIVSFNLKKE-GYEV-IEAENGQIA---LEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPV 79 (122)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-TCEE-EEESSHHHH---HHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCE
T ss_pred EEEEeCCHHHHHHHHHHHHHC-CcEE-EEeCCHHHH---HHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCE
Confidence 3444443 3455666777664 3333 345544443 445566678888888888877777888888753 5788
Q ss_pred EEEecc
Q psy13287 130 LVCSGD 135 (140)
Q Consensus 130 lv~T~~ 135 (140)
++.|..
T Consensus 80 i~~s~~ 85 (122)
T 3gl9_A 80 IVLTAK 85 (122)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 888763
No 445
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=37.68 E-value=89 Score=20.81 Aligned_cols=12 Identities=0% Similarity=-0.213 Sum_probs=5.0
Q ss_pred HHHhhcCCccEE
Q psy13287 119 FHDFRSGLCRNL 130 (140)
Q Consensus 119 ~~~f~~g~~~vl 130 (140)
++.+++..+.++
T Consensus 79 ~~~~~~~giPvV 90 (297)
T 3rot_A 79 LQRANKLNIPVI 90 (297)
T ss_dssp HHHHHHHTCCEE
T ss_pred HHHHHHCCCCEE
Confidence 344444344443
No 446
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=37.37 E-value=48 Score=22.04 Aligned_cols=38 Identities=3% Similarity=-0.143 Sum_probs=18.5
Q ss_pred HHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 91 ~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
...+.+...++.-..+.+..... ..++.+.+..+.+++
T Consensus 55 ~~~~~l~~~~vdgiIi~~~~~~~---~~~~~l~~~~iPvV~ 92 (287)
T 3bbl_A 55 IYRDLIRSGNVDGFVLSSINYND---PRVQFLLKQKFPFVA 92 (287)
T ss_dssp HHHHHHHTTCCSEEEECSCCTTC---HHHHHHHHTTCCEEE
T ss_pred HHHHHHHcCCCCEEEEeecCCCc---HHHHHHHhcCCCEEE
Confidence 34455555666655555432222 234455544566544
No 447
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=37.32 E-value=69 Score=19.41 Aligned_cols=22 Identities=0% Similarity=-0.078 Sum_probs=15.8
Q ss_pred HHHHHHHHhhcCCccEEEEecc
Q psy13287 114 HRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 114 ~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
.=...++..+.|++++||++++
T Consensus 51 ~l~~ll~~~~~g~id~vvv~~l 72 (143)
T 3ilx_A 51 GFLKLLRMILNNEVSRVITAYP 72 (143)
T ss_dssp HHHHHHHHHHTTCEEEEEESSH
T ss_pred HHHHHHHHHHhCCCCEEEEEeC
Confidence 4456677777888888888764
No 448
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=37.28 E-value=72 Score=19.60 Aligned_cols=76 Identities=8% Similarity=0.027 Sum_probs=43.1
Q ss_pred EEEcCcc-chHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccEEE
Q psy13287 55 YAFVQER-QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLV 131 (140)
Q Consensus 55 ~~~~~~~-~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vlv 131 (140)
+..++++ .-...+..++... ... +..+.+..++ .+.+....+.+..+--.|+...-.+.++.++. ..+.+++
T Consensus 10 iLivdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~a---l~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 84 (184)
T 3rqi_A 10 FLVIDDNEVFAGTLARGLERR-GYA-VRQAHNKDEA---LKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILV 84 (184)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-TCE-EEEECSHHHH---HHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHC-CCE-EEEeCCHHHH---HHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEE
Confidence 4445543 3456677777763 233 3445554443 34455566777777655554444555555553 4678888
Q ss_pred Eecc
Q psy13287 132 CSGD 135 (140)
Q Consensus 132 ~T~~ 135 (140)
.|..
T Consensus 85 lt~~ 88 (184)
T 3rqi_A 85 LTGY 88 (184)
T ss_dssp EESS
T ss_pred EeCC
Confidence 8763
No 449
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=37.28 E-value=54 Score=18.19 Aligned_cols=75 Identities=5% Similarity=-0.031 Sum_probs=42.1
Q ss_pred EEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc----CCccEE
Q psy13287 56 AFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS----GLCRNL 130 (140)
Q Consensus 56 ~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~----g~~~vl 130 (140)
..+++ ..-...+...+... ... ++.+.+..+ ..+.+......+..+--.++...-.+.++.++. ..+.++
T Consensus 5 livdd~~~~~~~l~~~L~~~-~~~-v~~~~~~~~---a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 5 LIVEDNELNMKLFHDLLEAQ-GYE-TLQTREGLS---ALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp EEECSCHHHHHHHHHHHHHT-TCE-EEEESCHHH---HHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred EEEcCCHHHHHHHHHHHHHc-CcE-EEEeCCHHH---HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 34443 33456677777663 333 334444443 334455556777777766665555566666664 357788
Q ss_pred EEecc
Q psy13287 131 VCSGD 135 (140)
Q Consensus 131 v~T~~ 135 (140)
+.|+.
T Consensus 80 ~~s~~ 84 (124)
T 1mb3_A 80 AVTAF 84 (124)
T ss_dssp EEC--
T ss_pred EEECC
Confidence 87763
No 450
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=37.23 E-value=33 Score=25.66 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=32.0
Q ss_pred HHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEE
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYY 105 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~ 105 (140)
.+.|..+++.. ..++++.|.|...++.+.+.|++.++....
T Consensus 371 ~~~L~~~~~~~-~~rVvi~a~s~~r~erL~~~L~~~~i~~~~ 411 (483)
T 3hjh_A 371 LDALRKFLETF-DGPVVFSVESEGRREALGELLARIKIAPQR 411 (483)
T ss_dssp THHHHHHHHHC-CSCEEEEESCSSTTTTTHHHHGGGTCCCEE
T ss_pred HHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHcCCCcee
Confidence 45666666442 468999999999999999999998876543
No 451
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=37.19 E-value=78 Score=22.10 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=6.2
Q ss_pred ceEEEEecCCCHHH
Q psy13287 101 YCCYYIHARMAQAH 114 (140)
Q Consensus 101 ~~v~~~h~~~~~~~ 114 (140)
..+..-.|+.+..+
T Consensus 94 vpViaGvg~~~t~~ 107 (315)
T 3na8_A 94 VPTIVSVSDLTTAK 107 (315)
T ss_dssp SCBEEECCCSSHHH
T ss_pred CcEEEecCCCCHHH
Confidence 34444444444443
No 452
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=37.06 E-value=94 Score=22.07 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHhhcCCccEEEE
Q psy13287 110 MAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 110 ~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
++.+||.++++.--.|++.|++.
T Consensus 76 Ls~eEr~~vi~~~~~grvpViaG 98 (344)
T 2hmc_A 76 LTDEQRMEGVERLVKAGIPVIVG 98 (344)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcEEEe
Confidence 34444444444322233444433
No 453
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=37.02 E-value=1e+02 Score=21.28 Aligned_cols=34 Identities=9% Similarity=-0.173 Sum_probs=14.9
Q ss_pred ceEEEEecCCCHHHHHHHHHHhhc-CCccEEEEec
Q psy13287 101 YCCYYIHARMAQAHRNRVFHDFRS-GLCRNLVCSG 134 (140)
Q Consensus 101 ~~v~~~h~~~~~~~R~~~~~~f~~-g~~~vlv~T~ 134 (140)
..+..-.|+.+..+=.+..+...+ |---+|+.++
T Consensus 78 vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 112 (301)
T 3m5v_A 78 VKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAP 112 (301)
T ss_dssp CEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 455555555555443333333332 3333444444
No 454
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=36.93 E-value=68 Score=22.06 Aligned_cols=13 Identities=8% Similarity=-0.274 Sum_probs=5.8
Q ss_pred ceEEEEecCCCHH
Q psy13287 101 YCCYYIHARMAQA 113 (140)
Q Consensus 101 ~~v~~~h~~~~~~ 113 (140)
..+..-.|+.+..
T Consensus 70 ~pviaGvg~~~t~ 82 (292)
T 2vc6_A 70 VPVIAGAGSNSTA 82 (292)
T ss_dssp SCBEEECCCSSHH
T ss_pred CcEEEecCCccHH
Confidence 3444444444443
No 455
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=36.90 E-value=68 Score=21.57 Aligned_cols=39 Identities=3% Similarity=0.083 Sum_probs=30.3
Q ss_pred HHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCce
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC 102 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~ 102 (140)
...+.+++...++.+.-|||.+-..+..+.+.|++.|++
T Consensus 175 ~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 175 LKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHHHTTTCCCEEEESSHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHHHcCCC
Confidence 456777777654566788999888999999999988763
No 456
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=36.86 E-value=60 Score=18.55 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=28.0
Q ss_pred HHHHhhCCC-CcEEEEeCchHHHHHHHHHHHhcCceEEEEec
Q psy13287 68 NTLFSKLQI-NQSIIFCNSTQRVELLAKKITELGYCCYYIHA 108 (140)
Q Consensus 68 ~~ll~~~~~-~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~ 108 (140)
...++.+.. --+|||-+..+..++.....+..|+.+-.+.+
T Consensus 68 irfvkslgaqvliiiydqdqnrleefsrevrrrgfevrtvts 109 (134)
T 2l69_A 68 IRFVKSLGAQVLIIIYDQDQNRLEEFSREVRRRGFEVRTVTS 109 (134)
T ss_dssp HHHHHHHCCCCEEEEECSCHHHHHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHhcCCeEEEEEEeCchhHHHHHHHHHHhcCceEEEecC
Confidence 334444432 33567778888888888888888888777654
No 457
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=36.78 E-value=85 Score=20.28 Aligned_cols=71 Identities=8% Similarity=-0.038 Sum_probs=39.8
Q ss_pred HHHHHHHHhhCCCCcEEEEeCc-------hHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNS-------TQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t-------~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
.....+.|.+....++.++... ....+-+.+.+++.|+.+..+.++.+.+.-....+++...+.+.++|++
T Consensus 103 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~~~ 180 (255)
T 1byk_A 103 IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCAT 180 (255)
T ss_dssp HHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEEECCCSCHHHHHHHSGGGCCTTCCEEEESS
T ss_pred HHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCcceeecCCccchHHHHHHHHhcCCCCEEEEeC
Confidence 3444444444444454444321 2234445566777777655566766666555555666556678888865
No 458
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=36.70 E-value=61 Score=18.59 Aligned_cols=77 Identities=5% Similarity=0.068 Sum_probs=50.6
Q ss_pred EEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHh-cCceEEEEecCCC-HHHHHHHHHHhhc----CCc
Q psy13287 55 YAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITE-LGYCCYYIHARMA-QAHRNRVFHDFRS----GLC 127 (140)
Q Consensus 55 ~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~-~~~~v~~~h~~~~-~~~R~~~~~~f~~----g~~ 127 (140)
++.+++ ..-...+..++.......+ +.+.+..+ ..+.+.+ ..+.+..+--.++ ...-...++.++. ..+
T Consensus 7 ilivdd~~~~~~~l~~~L~~~~~~~v-~~~~~~~~---a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~ 82 (140)
T 3lua_A 7 VLLIDYFEYEREKTKIIFDNIGEYDF-IEVENLKK---FYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANT 82 (140)
T ss_dssp EEEECSCHHHHHHHHHHHHHHCCCEE-EEECSHHH---HHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTC
T ss_pred EEEEeCCHHHHHHHHHHHHhccCccE-EEECCHHH---HHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCC
Confidence 344443 3445677777777223333 35555444 3445566 6778899988898 8888888888876 467
Q ss_pred cEEEEecc
Q psy13287 128 RNLVCSGD 135 (140)
Q Consensus 128 ~vlv~T~~ 135 (140)
.+++.|+.
T Consensus 83 ~ii~ls~~ 90 (140)
T 3lua_A 83 PVIIATKS 90 (140)
T ss_dssp CEEEEESC
T ss_pred CEEEEeCC
Confidence 88888763
No 459
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=36.63 E-value=93 Score=20.69 Aligned_cols=40 Identities=10% Similarity=-0.024 Sum_probs=19.7
Q ss_pred HHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 92 LAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 92 ~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
..+.+...++....+.+.... .-...++.+++..+.+++.
T Consensus 51 ~~~~~~~~~vdgiii~~~~~~-~~~~~~~~~~~~~iPvV~~ 90 (309)
T 2fvy_A 51 QIDVLLAKGVKALAINLVDPA-AAGTVIEKARGQNVPVVFF 90 (309)
T ss_dssp HHHHHHHTTCSEEEECCSSGG-GHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCcc-hhHHHHHHHHHCCCcEEEe
Confidence 344444556665555543222 1123456666655665543
No 460
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=36.55 E-value=62 Score=18.63 Aligned_cols=77 Identities=4% Similarity=0.051 Sum_probs=42.7
Q ss_pred EEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHh-cCceEEEEecCCCH-HHHHHHHHHhhc-CCccEE
Q psy13287 55 YAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITE-LGYCCYYIHARMAQ-AHRNRVFHDFRS-GLCRNL 130 (140)
Q Consensus 55 ~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~-~~~~v~~~h~~~~~-~~R~~~~~~f~~-g~~~vl 130 (140)
+..+++ ..-...+..++... ... ++.+.+..++ .+.+.+ ..+.+..+--.++. ..-...++.++. ..+.++
T Consensus 8 ilivdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~a---~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii 82 (140)
T 3h5i_A 8 ILIVEDSKFQAKTIANILNKY-GYT-VEIALTGEAA---VEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVV 82 (140)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-TCE-EEEESSHHHH---HHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEE
T ss_pred EEEEeCCHHHHHHHHHHHHHc-CCE-EEEecChHHH---HHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEE
Confidence 344443 34466777777764 233 3344444443 344444 56677777766642 333444444443 567888
Q ss_pred EEeccc
Q psy13287 131 VCSGDS 136 (140)
Q Consensus 131 v~T~~~ 136 (140)
+.|+..
T Consensus 83 ~ls~~~ 88 (140)
T 3h5i_A 83 FLTAHT 88 (140)
T ss_dssp EEESSS
T ss_pred EEECCC
Confidence 888643
No 461
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=36.32 E-value=95 Score=21.53 Aligned_cols=34 Identities=6% Similarity=-0.115 Sum_probs=14.9
Q ss_pred ceEEEEecCCCHHHHHHHHHHhh-cCCccEEEEec
Q psy13287 101 YCCYYIHARMAQAHRNRVFHDFR-SGLCRNLVCSG 134 (140)
Q Consensus 101 ~~v~~~h~~~~~~~R~~~~~~f~-~g~~~vlv~T~ 134 (140)
..+..-.|..+..+=.+..+... .|---+|+.++
T Consensus 84 ~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 118 (307)
T 3s5o_A 84 RLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTP 118 (307)
T ss_dssp SEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 44555445555544333333333 34334455554
No 462
>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} SCOP: d.74.2.1
Probab=35.95 E-value=55 Score=17.92 Aligned_cols=35 Identities=17% Similarity=0.419 Sum_probs=25.6
Q ss_pred HHHHHHHHhhC----------CCCcEEEEeCchHHHHHHHHHHHh
Q psy13287 64 VHCLNTLFSKL----------QINQSIIFCNSTQRVELLAKKITE 98 (140)
Q Consensus 64 ~~~l~~ll~~~----------~~~~~lIF~~t~~~~~~~~~~L~~ 98 (140)
...+..++++. ..+-++|.|.+...++.+.+.|++
T Consensus 37 A~~vA~~iD~~~~~eIlGTIAGDDTIlvi~r~~~~a~~l~~~l~~ 81 (83)
T 2p5m_A 37 AQAIGALMDNLDWDEMMGTICGDDTILIICRTPEDTEGVKNRLLE 81 (83)
T ss_dssp HHHHHHHHHTTTCTTCCEEEECSSEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCeEEEEecCCEEEEEECCHHHHHHHHHHHHH
Confidence 45566666655 234567899999999999998865
No 463
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=35.94 E-value=76 Score=21.60 Aligned_cols=14 Identities=0% Similarity=0.112 Sum_probs=7.2
Q ss_pred HHHHhhcCCccEEE
Q psy13287 118 VFHDFRSGLCRNLV 131 (140)
Q Consensus 118 ~~~~f~~g~~~vlv 131 (140)
.++.+....+.+++
T Consensus 131 ~~~~l~~~~iPvV~ 144 (332)
T 2hsg_A 131 HVEELKKSPVPVVL 144 (332)
T ss_dssp HHHHHTTSSSCEEE
T ss_pred HHHHHHhCCCCEEE
Confidence 45555554555544
No 464
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=35.91 E-value=57 Score=18.01 Aligned_cols=68 Identities=12% Similarity=0.006 Sum_probs=39.9
Q ss_pred hHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccEEEEecc
Q psy13287 63 KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLVCSGD 135 (140)
Q Consensus 63 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vlv~T~~ 135 (140)
-...+...+... ... +..+.+..++ .+.+......+..+--.++...-...++.++. ..+.+++.|+.
T Consensus 12 ~~~~l~~~l~~~-g~~-v~~~~~~~~a---~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 12 LRHHLKVQIQDA-GHQ-VDDAEDAKEA---DYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp HHHHHHHHHHHT-TCE-EEEESSHHHH---HHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESC
T ss_pred HHHHHHHHHhhc-CCE-EEEeCCHHHH---HHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecC
Confidence 355666777653 233 4455554444 34455566777777766665445566666664 35778877763
No 465
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=35.79 E-value=99 Score=20.79 Aligned_cols=59 Identities=7% Similarity=-0.016 Sum_probs=39.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhh--cCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~--~g~~~vlv~T~ 134 (140)
.-++++...+.+..+.+.+.+...+.++..+..+++..+ -...++... .|.+++||..-
T Consensus 32 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnA 93 (280)
T 3tox_A 32 GAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNA 93 (280)
T ss_dssp TCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 345566666667777888888777778888888876443 334444432 27889888754
No 466
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=35.74 E-value=56 Score=17.94 Aligned_cols=68 Identities=7% Similarity=-0.018 Sum_probs=37.9
Q ss_pred hHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc-CCccEEEEecc
Q psy13287 63 KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS-GLCRNLVCSGD 135 (140)
Q Consensus 63 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~-g~~~vlv~T~~ 135 (140)
-...+...+... ... +..+.+..++. +.+.+..+.+..+--.++...-...++.++. ..+.+++.|+.
T Consensus 13 ~~~~l~~~l~~~-~~~-v~~~~~~~~a~---~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~ 81 (120)
T 2a9o_A 13 ISDIIKFNMTKE-GYE-VVTAFNGREAL---EQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAK 81 (120)
T ss_dssp HHHHHHHHHHHT-TCE-EEEESSHHHHH---HHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESC
T ss_pred HHHHHHHHHHhc-CcE-EEEecCHHHHH---HHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecC
Confidence 355666677653 233 34555544433 4445556777777766654444455555543 45778877753
No 467
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=35.55 E-value=88 Score=20.10 Aligned_cols=52 Identities=8% Similarity=0.153 Sum_probs=25.7
Q ss_pred cEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 78 QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 78 ~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
+.++.++..+-.+.+.+...+.+.++..+.+++ ++-....+++ ++..+++||
T Consensus 6 ~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l--~~~v~~a~~~-~~~~dVIIS 57 (196)
T 2q5c_A 6 KIALISQNENLLNLFPKLALEKNFIPITKTASL--TRASKIAFGL-QDEVDAIIS 57 (196)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCEEEEEECCH--HHHHHHHHHH-TTTCSEEEE
T ss_pred cEEEEEccHHHHHHHHHHHhhhCCceEEEECCH--HHHHHHHHHh-cCCCeEEEE
Confidence 445555555544444444444455565666663 3333334444 455666665
No 468
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A
Probab=35.47 E-value=5.6 Score=24.35 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=22.7
Q ss_pred CCcEEEEeCchHHHHHH------HHHHH--hcCc-eEEEEecCCC
Q psy13287 76 INQSIIFCNSTQRVELL------AKKIT--ELGY-CCYYIHARMA 111 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~------~~~L~--~~~~-~v~~~h~~~~ 111 (140)
..+++|||.+-..+... +..|+ ..|+ ++..+.|++.
T Consensus 78 ~~~iVvyc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~ 122 (153)
T 2vsw_A 78 SQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFA 122 (153)
T ss_dssp TSEEEEECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHH
T ss_pred CCeEEEEeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHH
Confidence 46789999875443222 34444 2266 6899999954
No 469
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=35.44 E-value=59 Score=18.05 Aligned_cols=75 Identities=8% Similarity=0.134 Sum_probs=42.2
Q ss_pred EEcCcc-chHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc-CCccEEEEe
Q psy13287 56 AFVQER-QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS-GLCRNLVCS 133 (140)
Q Consensus 56 ~~~~~~-~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~-g~~~vlv~T 133 (140)
..++++ .-...+...+... ... +..+.+..++. +.+......+..+--.++...-...++.++. ....+++.|
T Consensus 7 livdd~~~~~~~l~~~l~~~-~~~-v~~~~~~~~a~---~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 81 (123)
T 1xhf_A 7 LIVEDELVTRNTLKSIFEAE-GYD-VFEATDGAEMH---QILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (123)
T ss_dssp EEECSCHHHHHHHHHHHHTT-TCE-EEEESSHHHHH---HHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHhhC-CcE-EEEeCCHHHHH---HHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 334433 3455667777653 233 44555544443 4455566777777766654444455555553 467788777
Q ss_pred cc
Q psy13287 134 GD 135 (140)
Q Consensus 134 ~~ 135 (140)
+.
T Consensus 82 ~~ 83 (123)
T 1xhf_A 82 GR 83 (123)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 470
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=35.44 E-value=53 Score=17.51 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=25.1
Q ss_pred EEEEe-CchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHh-hcCCccEEE
Q psy13287 79 SIIFC-NSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDF-RSGLCRNLV 131 (140)
Q Consensus 79 ~lIF~-~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f-~~g~~~vlv 131 (140)
+++|. +....|..+...|.+.++.+..+.-+ .+.+....+.+ ....+.+++
T Consensus 8 v~~y~~~~C~~C~~~~~~L~~~~i~~~~vdv~--~~~~~~l~~~~~~~~~vP~l~ 60 (89)
T 2klx_A 8 IILYTRPNCPYCKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRANGRNTFPQIF 60 (89)
T ss_dssp EEEESCSCCTTTHHHHHHHHHHTCCEEEECSC--HHHHHHHHHHHHSSCCSCEEE
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEECC--HHHHHHHHHHhCCCCCcCEEE
Confidence 44444 33455556666666556555544443 33344444444 334455443
No 471
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=35.31 E-value=1e+02 Score=20.69 Aligned_cols=57 Identities=5% Similarity=-0.008 Sum_probs=42.8
Q ss_pred CcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEecc
Q psy13287 77 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSGD 135 (140)
Q Consensus 77 ~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~~ 135 (140)
..++|=+.+.+.+....+...+.|.++..-.-+.+.++. ..++.+.+. +.++++.|.
T Consensus 54 ~DVvIDFT~P~a~~~~~~~~~~~g~~~ViGTTG~~~~~~-~~l~~~a~~-~~vv~apNf 110 (228)
T 1vm6_A 54 PDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHL-QMLRELSKE-VPVVQAYNF 110 (228)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHHTCEEEECCCSCCHHHH-HHHHHHTTT-SEEEECSCC
T ss_pred CCEEEECCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHH-HHHHHHHhh-CCEEEeccc
Confidence 458886667888888888888889888777777887655 556666544 899998873
No 472
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=35.30 E-value=80 Score=22.02 Aligned_cols=13 Identities=0% Similarity=-0.381 Sum_probs=5.6
Q ss_pred ceEEEEecCCCHHH
Q psy13287 101 YCCYYIHARMAQAH 114 (140)
Q Consensus 101 ~~v~~~h~~~~~~~ 114 (140)
.++..--|+ +..+
T Consensus 82 vpViaGvg~-st~~ 94 (314)
T 3d0c_A 82 ATVVAGIGY-SVDT 94 (314)
T ss_dssp SEEEEEECS-SHHH
T ss_pred CeEEecCCc-CHHH
Confidence 344444444 4433
No 473
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=35.22 E-value=99 Score=20.63 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=41.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHH-HHHHHHHHhh--cCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQA-HRNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~-~R~~~~~~f~--~g~~~vlv~T~ 134 (140)
.-++++...+.+..+.+++.+...+.++..+..++... .-...++... .|.+++||..-
T Consensus 28 G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA 89 (264)
T 3tfo_A 28 GAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNA 89 (264)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 44566777777888888999988888888888888644 3344444443 27899998754
No 474
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=35.20 E-value=58 Score=23.13 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCceEEEEecC--------CCHHHHHHH-HHHhhcCCccEEEEec
Q psy13287 88 RVELLAKKITELGYCCYYIHAR--------MAQAHRNRV-FHDFRSGLCRNLVCSG 134 (140)
Q Consensus 88 ~~~~~~~~L~~~~~~v~~~h~~--------~~~~~R~~~-~~~f~~g~~~vlv~T~ 134 (140)
..+...+.|++.|++|...-.- =+.++|.+- .+.|.+-+++.++|+-
T Consensus 26 ~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 81 (346)
T 4eys_A 26 EVDLGIQRLKDLGLNPIFLPHSLKGLDFIKDHPEARAEDLIHAFSDDSIDMILCAI 81 (346)
T ss_dssp HHHHHHHHHHHTTCEEEECTTTTSCHHHHHHCHHHHHHHHHHHHHCTTCCEEEECC
T ss_pred HHHHHHHHHHhCCCEEEECCchhccCCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 4456667777788877653111 124455444 4556777889888863
No 475
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=35.17 E-value=1e+02 Score=20.88 Aligned_cols=59 Identities=7% Similarity=-0.003 Sum_probs=42.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhh--cCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~--~g~~~vlv~T~ 134 (140)
..++++...+.+..+.+.+.+...+.++..+..++...+ -...++... .|.+++||..-
T Consensus 55 G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lvnnA 116 (301)
T 3tjr_A 55 GARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNA 116 (301)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 356777777788888888899888888889999986543 334444443 27899999764
No 476
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=35.16 E-value=51 Score=22.84 Aligned_cols=30 Identities=17% Similarity=0.040 Sum_probs=23.9
Q ss_pred EEEeCchHHHHHHHHHHHhcCceEEEEecC
Q psy13287 80 IIFCNSTQRVELLAKKITELGYCCYYIHAR 109 (140)
Q Consensus 80 lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~ 109 (140)
.||.|+...+++++..+++.|++..+---+
T Consensus 123 ~v~~n~~~~~~~~~~~~~e~Gv~pE~e~fd 152 (282)
T 2y7e_A 123 DIFINHPADIIRLAEAFKQYNVVPEVEVYE 152 (282)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred ccccCCHHHHHHHHHHHHHcCCeEEEEEEC
Confidence 789999999999999999988865444444
No 477
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=35.14 E-value=51 Score=17.29 Aligned_cols=35 Identities=9% Similarity=-0.106 Sum_probs=23.6
Q ss_pred cEEEEe-CchHHHHHHHHHHHhcCceEEEEecCCCH
Q psy13287 78 QSIIFC-NSTQRVELLAKKITELGYCCYYIHARMAQ 112 (140)
Q Consensus 78 ~~lIF~-~t~~~~~~~~~~L~~~~~~v~~~h~~~~~ 112 (140)
++.+|. +....|..+...|.+.++......-+...
T Consensus 5 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~~vd~~~ 40 (89)
T 3msz_A 5 KVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYA 40 (89)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEECCSHH
T ss_pred EEEEEEcCCChhHHHHHHHHHHcCCCceEEEeecCC
Confidence 355666 56778888888888888766555444433
No 478
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=35.14 E-value=57 Score=17.85 Aligned_cols=69 Identities=12% Similarity=0.016 Sum_probs=40.9
Q ss_pred chHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccEEEEecc
Q psy13287 62 QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLVCSGD 135 (140)
Q Consensus 62 ~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vlv~T~~ 135 (140)
.-...+...+... .. .+..+.+..++ .+.+......+..+--.++...-...++.++. ....+++.|+.
T Consensus 12 ~~~~~l~~~l~~~-~~-~v~~~~~~~~a---~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 12 NIRELLKEELQEE-GY-EIDTAENGEEA---LKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp HHHHHHHHHHHHT-TC-EEEEESSHHHH---HHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHHHHHHC-CC-EEEEeCCHHHH---HHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 3456677777663 23 34455554444 34455666777777766665444556666653 45778887753
No 479
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=34.88 E-value=94 Score=21.90 Aligned_cols=35 Identities=9% Similarity=0.088 Sum_probs=27.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCce-EEEEecCC
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYC-CYYIHARM 110 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~-v~~~h~~~ 110 (140)
.+++++||.|--+|--+.-.|...|++ +..|-|+.
T Consensus 275 ~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSW 310 (327)
T 3utn_X 275 SKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSW 310 (327)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcH
Confidence 467999999987777777778888984 77887763
No 480
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=34.82 E-value=99 Score=20.50 Aligned_cols=59 Identities=17% Similarity=0.115 Sum_probs=40.4
Q ss_pred CCcEEEEeC-chHHHHHHHHHHHhcCceEEEEecCCCHH-HHHHHHHHhh--cCCccEEEEec
Q psy13287 76 INQSIIFCN-STQRVELLAKKITELGYCCYYIHARMAQA-HRNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~-t~~~~~~~~~~L~~~~~~v~~~h~~~~~~-~R~~~~~~f~--~g~~~vlv~T~ 134 (140)
..++++... ..+..+.+.+.+...+.++..+..++... .-...++... .|.+++||..-
T Consensus 53 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~nA 115 (271)
T 4iin_A 53 GLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDGGLSYLVNNA 115 (271)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 345555554 56667788888888888899999998644 3444454443 27899998754
No 481
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=34.78 E-value=65 Score=18.33 Aligned_cols=76 Identities=12% Similarity=0.046 Sum_probs=46.6
Q ss_pred EEEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc--CCccEEE
Q psy13287 55 YAFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS--GLCRNLV 131 (140)
Q Consensus 55 ~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vlv 131 (140)
++.+++ ..-...+..++.. .+-.+..+.+..++. +.+.+..+.+..+--.++...-...++.++. ..+.+++
T Consensus 10 ilivdd~~~~~~~l~~~L~~--~~~~v~~~~~~~~a~---~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (137)
T 3hdg_A 10 ILIVEDDTDAREWLSTIISN--HFPEVWSAGDGEEGE---RLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIV 84 (137)
T ss_dssp EEEECSCHHHHHHHHHHHHT--TCSCEEEESSHHHHH---HHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHh--cCcEEEEECCHHHHH---HHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 344443 3445667777776 233345555555543 3445557788888877776666677777765 3567888
Q ss_pred Eecc
Q psy13287 132 CSGD 135 (140)
Q Consensus 132 ~T~~ 135 (140)
.|+.
T Consensus 85 ~s~~ 88 (137)
T 3hdg_A 85 ISAF 88 (137)
T ss_dssp CCCC
T ss_pred EecC
Confidence 7763
No 482
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=34.73 E-value=1.1e+02 Score=21.19 Aligned_cols=13 Identities=8% Similarity=-0.317 Sum_probs=5.4
Q ss_pred ceEEEEecCCCHH
Q psy13287 101 YCCYYIHARMAQA 113 (140)
Q Consensus 101 ~~v~~~h~~~~~~ 113 (140)
..+..-.|+.+..
T Consensus 77 vpViaGvg~~~t~ 89 (313)
T 3dz1_A 77 MQVIVGVSAPGFA 89 (313)
T ss_dssp SEEEEECCCSSHH
T ss_pred CcEEEecCCCCHH
Confidence 3444444444433
No 483
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=34.72 E-value=94 Score=21.27 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 89 VELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 89 ~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
...+.+.+.+.|+.+..+..+- .+.....++.+....++.+|..+
T Consensus 83 ~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~ 127 (333)
T 3jvd_A 83 LQTIQQDLKAAGYQMLVAEANS-VQAQDVVMESLISIQAAGIIHVP 127 (333)
T ss_dssp HHHHHHHHHHHTCEEEEEECCS-HHHHHHHHHHHHHHTCSEEEECC
T ss_pred HHHHHHHHHHCCCEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcc
Confidence 4445556666799888777766 66666778888877788777654
No 484
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=34.70 E-value=81 Score=19.46 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=27.5
Q ss_pred hHHHHHHHHhhC--CCCcEEEEeCchHHHHHHHHHHHh
Q psy13287 63 KVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITE 98 (140)
Q Consensus 63 k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~~~~~L~~ 98 (140)
+....+.++.+. ...+++|.|.+.+.++.+-+.|=.
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~ 61 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWA 61 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhC
Confidence 456666666544 467899999999999999888843
No 485
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=34.70 E-value=37 Score=21.42 Aligned_cols=42 Identities=7% Similarity=0.128 Sum_probs=29.9
Q ss_pred chHHHHHHHHhhCCC-CcEEEEeCchHHHHHHHHHHHhcCceE
Q psy13287 62 QKVHCLNTLFSKLQI-NQSIIFCNSTQRVELLAKKITELGYCC 103 (140)
Q Consensus 62 ~k~~~l~~ll~~~~~-~~~lIF~~t~~~~~~~~~~L~~~~~~v 103 (140)
.....+.++.+.+++ +..++.+.+....+.+.+.+++.|+.+
T Consensus 120 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~ 162 (204)
T 3e05_A 120 MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMV 162 (204)
T ss_dssp CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCce
Confidence 344556666666654 566666688889999999999988643
No 486
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=34.48 E-value=91 Score=21.21 Aligned_cols=39 Identities=3% Similarity=-0.094 Sum_probs=18.7
Q ss_pred HHHHHHhcC--ceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 92 LAKKITELG--YCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 92 ~~~~L~~~~--~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
..+.+...+ +.-..+.+.. ...-...++.+.+..+.+++
T Consensus 53 ~i~~l~~~~~~vdgiIi~~~~-~~~~~~~~~~~~~~~iPvV~ 93 (332)
T 2rjo_A 53 DIRALLQKTGGNLVLNVDPND-SADARVIVEACSKAGAYVTT 93 (332)
T ss_dssp HHHHHHHHTTTCEEEEECCSS-HHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHCCCCCCEEEEeCCC-HHHHHHHHHHHHHCCCeEEE
Confidence 334444456 7665665542 22222345555544456543
No 487
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=34.48 E-value=1.5e+02 Score=24.02 Aligned_cols=45 Identities=11% Similarity=-0.067 Sum_probs=30.6
Q ss_pred HHHHHHHHhhCCCCcEEEEeCchHHHHHHHH----HHHhcCceEEEEec
Q psy13287 64 VHCLNTLFSKLQINQSIIFCNSTQRVELLAK----KITELGYCCYYIHA 108 (140)
Q Consensus 64 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~----~L~~~~~~v~~~h~ 108 (140)
...+.-++..+....+.|.+.+.--|..-++ ..+-.|+.|+++.+
T Consensus 104 va~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~ 152 (822)
T 3jux_A 104 AATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINS 152 (822)
T ss_dssp HTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred HHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcC
Confidence 3445556677777778888888665554444 44556999988887
No 488
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=34.45 E-value=64 Score=18.21 Aligned_cols=77 Identities=6% Similarity=0.124 Sum_probs=47.1
Q ss_pred EEcCc-cchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHh-------cCceEEEEecCCCHHHHHHHHHHhhc---
Q psy13287 56 AFVQE-RQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITE-------LGYCCYYIHARMAQAHRNRVFHDFRS--- 124 (140)
Q Consensus 56 ~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~-------~~~~v~~~h~~~~~~~R~~~~~~f~~--- 124 (140)
+.+++ ..-...+...+........+..+.+..++. +.+.. ..+.+..+--.++...-...++.++.
T Consensus 6 livdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~---~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~ 82 (140)
T 1k68_A 6 FLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAM---AYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPT 82 (140)
T ss_dssp EEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHH---HHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTT
T ss_pred EEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHH---HHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcc
Confidence 33443 344567777777654332455565555443 44544 46778888877766556677777765
Q ss_pred -CCccEEEEecc
Q psy13287 125 -GLCRNLVCSGD 135 (140)
Q Consensus 125 -g~~~vlv~T~~ 135 (140)
..+.+++.|+.
T Consensus 83 ~~~~pii~ls~~ 94 (140)
T 1k68_A 83 LKRIPVVVLSTS 94 (140)
T ss_dssp GGGSCEEEEESC
T ss_pred cccccEEEEecC
Confidence 34678887763
No 489
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=34.43 E-value=72 Score=22.26 Aligned_cols=12 Identities=0% Similarity=-0.086 Sum_probs=5.0
Q ss_pred CHHHHHHHHHHh
Q psy13287 111 AQAHRNRVFHDF 122 (140)
Q Consensus 111 ~~~~R~~~~~~f 122 (140)
+.+||.++++..
T Consensus 63 s~eEr~~v~~~~ 74 (316)
T 3e96_A 63 SLEEAKEEVRRT 74 (316)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 344444444433
No 490
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=34.29 E-value=67 Score=18.39 Aligned_cols=73 Identities=8% Similarity=0.131 Sum_probs=45.2
Q ss_pred ccchHHHHHHHHhhCCCCcEEEEeCchHHHHHHHHHHHh------cCceEEEEecCCCHHHHHHHHHHhhc----CCccE
Q psy13287 60 ERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITE------LGYCCYYIHARMAQAHRNRVFHDFRS----GLCRN 129 (140)
Q Consensus 60 ~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~~~~~L~~------~~~~v~~~h~~~~~~~R~~~~~~f~~----g~~~v 129 (140)
+..-...+...+........+..+.+..++. +.+++ ....+..+--.++...-...++.++. ..+.+
T Consensus 16 ~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~---~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 92 (143)
T 2qvg_A 16 DEVDIQSVERVFHKISSLIKIEIAKSGNQAL---DMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSSFTDIEV 92 (143)
T ss_dssp CHHHHHHHHHHHHHHCTTCCEEEESSHHHHH---HHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEE
T ss_pred CHHHHHHHHHHHHHhCCCceEEEECCHHHHH---HHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCccccCCcE
Confidence 3344566777777654432345555554443 44554 45678888877776666677777775 35778
Q ss_pred EEEecc
Q psy13287 130 LVCSGD 135 (140)
Q Consensus 130 lv~T~~ 135 (140)
++.|+-
T Consensus 93 i~ls~~ 98 (143)
T 2qvg_A 93 FVLTAA 98 (143)
T ss_dssp EEEESC
T ss_pred EEEeCC
Confidence 887763
No 491
>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}
Probab=34.27 E-value=31 Score=22.62 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=28.1
Q ss_pred HHHHHhhCCCCCeEEEEEecCchhHHHHHHHhcc
Q psy13287 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLK 35 (140)
Q Consensus 2 l~~il~~~~~~~q~v~~SAT~~~~~~~~~~~~~~ 35 (140)
+.+.|+.+.+...++++||+....+..++..+-.
T Consensus 64 l~eFL~~l~~~yeivI~Tas~~~ya~~vl~~LDp 97 (204)
T 3qle_A 64 ADYFLGYLSQYYEIVLFSSNYMMYSDKIAEKLDP 97 (204)
T ss_dssp HHHHHHHHTTTEEEEEECSSCHHHHHHHHHHTST
T ss_pred HHHHHHHHHhCCEEEEEcCCcHHHHHHHHHHhCC
Confidence 4577888888899999999999888888877643
No 492
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=34.24 E-value=1.5e+02 Score=22.49 Aligned_cols=51 Identities=6% Similarity=0.007 Sum_probs=30.8
Q ss_pred CCcEEEEeCchHH-----------HHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCC
Q psy13287 76 INQSIIFCNSTQR-----------VELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGL 126 (140)
Q Consensus 76 ~~~~lIF~~t~~~-----------~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~ 126 (140)
-.+++|+++|-++ +-.++++|++.|..|..+.=+++.-.+....=+...|+
T Consensus 218 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lge 279 (513)
T 3oaa_A 218 LANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRR 279 (513)
T ss_dssp STTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHHHHHHHHTTC
T ss_pred ccceEEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHhcCC
Confidence 4566666665432 44667788877777877777766655444433333343
No 493
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=34.17 E-value=1.5e+02 Score=22.33 Aligned_cols=48 Identities=4% Similarity=0.068 Sum_probs=31.9
Q ss_pred CCcEEEEeC---chHHHHHHHHHHHhcCceEEEEecC--CCHHHHHHHHHHhhc
Q psy13287 76 INQSIIFCN---STQRVELLAKKITELGYCCYYIHAR--MAQAHRNRVFHDFRS 124 (140)
Q Consensus 76 ~~~~lIF~~---t~~~~~~~~~~L~~~~~~v~~~h~~--~~~~~R~~~~~~f~~ 124 (140)
..+++|+|- +--+.-.++..|...|++|..+.-. ++.+.+. .++.|++
T Consensus 52 ~~~v~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~-~~~~~~~ 104 (502)
T 3rss_A 52 DYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKKTPDCEY-NYGLYKK 104 (502)
T ss_dssp TCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSCCHHHHH-HHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEEECCCCCHHHHH-HHHHHHh
Confidence 467999994 4445668889999999988766554 4444433 3455554
No 494
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=34.02 E-value=27 Score=23.13 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEE
Q psy13287 89 VELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131 (140)
Q Consensus 89 ~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv 131 (140)
...+.+.+.+.|+.+..+..+ +.+.....++.+....++.+|
T Consensus 24 ~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI 65 (280)
T 3gyb_A 24 IQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII 65 (280)
T ss_dssp HHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE
Confidence 334444555556666666666 555455566666666666666
No 495
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=34.02 E-value=67 Score=18.33 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=41.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEEec
Q psy13287 75 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134 (140)
Q Consensus 75 ~~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~T~ 134 (140)
+..+++|..|...-..++.+.+.+.|+++..+-.+.+..+-.+--++.......+--.||
T Consensus 50 nfekiliisndkqllkemlelisklgykvflllqdqdeneleefkrkiesqgyevrkvtd 109 (134)
T 2lci_A 50 NFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVTD 109 (134)
T ss_dssp SCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEECC
T ss_pred CcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecCC
Confidence 456788888888888888888888899888888887766544444444444444433333
No 496
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=33.95 E-value=88 Score=20.36 Aligned_cols=52 Identities=12% Similarity=0.196 Sum_probs=28.8
Q ss_pred cEEEEeCc--hHHHHHHHHHHHhc-CceEEEEecCCCHHHHHHHHHHhhcCC-ccEEEEec
Q psy13287 78 QSIIFCNS--TQRVELLAKKITEL-GYCCYYIHARMAQAHRNRVFHDFRSGL-CRNLVCSG 134 (140)
Q Consensus 78 ~~lIF~~t--~~~~~~~~~~L~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g~-~~vlv~T~ 134 (140)
...||+.. ....+++.+.+.+. |+++...+|+.. ..++++++|. .+++++.|
T Consensus 8 ~l~v~~a~s~~~~~~~l~~~Fe~~~gi~V~~~~~~s~-----~l~~~i~~g~~~Dv~~~a~ 63 (237)
T 3r26_A 8 KITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSS-----TLARQIEAGAPADLFISAD 63 (237)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHCCEEEEEEECHH-----HHHHHHHHTCCCSEEECSS
T ss_pred cEEEEEccchHHHHHHHHHHHHhccCCeEEEEECCHH-----HHHHHHHcCCCceEEEECC
Confidence 45566643 34556666666544 777766665532 2333334454 67777654
No 497
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=33.92 E-value=59 Score=21.61 Aligned_cols=40 Identities=3% Similarity=-0.252 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccEEEE
Q psy13287 90 ELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132 (140)
Q Consensus 90 ~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vlv~ 132 (140)
..+.+.+...++.-..+.+..... ..++.+++..+.+++.
T Consensus 56 ~~~~~~l~~~~vdgiIi~~~~~~~---~~~~~l~~~~iPvV~i 95 (288)
T 3gv0_A 56 VPIRYILETGSADGVIISKIEPND---PRVRFMTERNMPFVTH 95 (288)
T ss_dssp HHHHHHHHHTCCSEEEEESCCTTC---HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCccEEEEecCCCCc---HHHHHHhhCCCCEEEE
Confidence 445555666666655555433222 3355565556665543
No 498
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=33.84 E-value=1.4e+02 Score=22.42 Aligned_cols=53 Identities=9% Similarity=0.000 Sum_probs=32.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhcCCccE
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRN 129 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 129 (140)
.+-.+||++-....+.+ +.+-+.|+++..+.++.+.....++.+.-+...+++
T Consensus 37 ~DlavI~vPa~~v~~~v-~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rl 89 (480)
T 3dmy_A 37 ANLALISVAGEYAAELA-NQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLV 89 (480)
T ss_dssp CCEEEECSCHHHHHHHH-HHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEecCHHHHHHHH-HHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence 44567777754444444 444466777777888888655555656555554443
No 499
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=33.53 E-value=1.1e+02 Score=20.47 Aligned_cols=59 Identities=12% Similarity=-0.022 Sum_probs=42.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhcCceEEEEecCCCHHH-HHHHHHHhh--cCCccEEEEec
Q psy13287 76 INQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAH-RNRVFHDFR--SGLCRNLVCSG 134 (140)
Q Consensus 76 ~~~~lIF~~t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~-R~~~~~~f~--~g~~~vlv~T~ 134 (140)
.-++++...+....+++.+.+...+.++..+..++...+ -...++... .|.+++||..-
T Consensus 52 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA 113 (270)
T 3ftp_A 52 GAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGALNVLVNNA 113 (270)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 446777778888888898989888878888888886443 334444443 27899998754
No 500
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=33.53 E-value=1.1e+02 Score=22.34 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHhcCceEEEEecCCCHHHHHHHHHHhhc
Q psy13287 85 STQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRS 124 (140)
Q Consensus 85 t~~~~~~~~~~L~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 124 (140)
+.++|+.+++.|++.|+.|..+ .+.+.++=...+++|..
T Consensus 25 a~~DA~~L~~~L~~lGF~V~~l-~DlT~~eI~~aL~~f~~ 63 (390)
T 3uoa_B 25 PLVDVYELTNLLRQLDFKVVSL-LDLTEYEMRNAVDEFLL 63 (390)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCeEEEe-ecCCHHHHHHHHHHHHh
Confidence 4678888999998888887554 46777776677777753
Done!