RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13287
(140 letters)
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 218 bits (559), Expect = 9e-72
Identities = 102/141 (72%), Positives = 112/141 (79%), Gaps = 8/141 (5%)
Query: 1 MLD--------HVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVT 52
ML ++S LP Q LL+SATFPLTVK FM KHL PYEINLMEELTLKG+T
Sbjct: 175 MLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGIT 234
Query: 53 QYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQ 112
QYYAFV+ERQK+HCLNTLFSKLQINQ+IIFCNST RVELLAKKIT+LGY CYY HARM Q
Sbjct: 235 QYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQ 294
Query: 113 AHRNRVFHDFRSGLCRNLVCS 133
RN+VFH+FR G R LVCS
Sbjct: 295 QERNKVFHEFRQGKVRTLVCS 315
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 198 bits (505), Expect = 1e-63
Identities = 45/143 (31%), Positives = 78/143 (54%), Gaps = 10/143 (6%)
Query: 1 MLD--------HVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGV 51
ML + ++LP Q++L SAT P V K +++P I + +ELTL+G+
Sbjct: 174 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGI 233
Query: 52 TQYYAFVQERQ-KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARM 110
Q+Y V+E + K CL L+ + + Q++IFCN+ ++VE L K+ + I++ +
Sbjct: 234 KQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDL 293
Query: 111 AQAHRNRVFHDFRSGLCRNLVCS 133
Q R+ + +FRSG R L+ +
Sbjct: 294 PQQERDTIMKEFRSGSSRILIST 316
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 198 bits (506), Expect = 1e-63
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 1 MLD--------HVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGV 51
ML + L Q++L SAT P V +K ++DP I + EELTL+G+
Sbjct: 195 MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI 254
Query: 52 TQYYAFV-QERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARM 110
Q+Y V +E K+ L L+ L I Q++IF N+ ++V+ L +K+ + +H M
Sbjct: 255 RQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDM 314
Query: 111 AQAHRNRVFHDFRSGLCRNLVCS 133
Q R+ + +FRSG R L+ +
Sbjct: 315 DQKERDVIMREFRSGSSRVLITT 337
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET:
ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 194 bits (496), Expect = 4e-62
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 1 MLD--------HVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKGV 51
ML+ V LP Q++L SAT P + K + DP I + +ELTL+G+
Sbjct: 191 MLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGI 250
Query: 52 TQYYAFV-QERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARM 110
Q++ V +E K L L+ L I Q++IFCN+ ++V+ L +K+ E + +H M
Sbjct: 251 KQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDM 310
Query: 111 AQAHRNRVFHDFRSGLCRNLVCS 133
Q R + +FRSG R L+ +
Sbjct: 311 PQKERESIMKEFRSGASRVLIST 333
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 193 bits (494), Expect = 5e-62
Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 5 VISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLME--ELTLKGVTQYYAFVQERQ 62
+ + PHE+Q++++SAT ++ K ++DP EI + + +LTL G+ QYY +++ +
Sbjct: 177 IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE 236
Query: 63 KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDF 122
K L L L+ NQ +IF S QR LA+ + E + IH M Q R + F
Sbjct: 237 KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF 296
Query: 123 RSGLCRNLVCS 133
+ R LV +
Sbjct: 297 KDFQRRILVAT 307
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 175 bits (445), Expect = 7e-54
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 1 MLDH---------VISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKG 50
M+ + +LP Q+LL+SATF +V F +K + DP I L EE TL
Sbjct: 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDT 306
Query: 51 VTQYYAFVQER-QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAR 109
+ QYY R +K L L+ + I Q++IFC++ + LA ++++ G+ +
Sbjct: 307 IKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGE 366
Query: 110 MAQAHRNRVFHDFRSGLCRNLVCS 133
M R V FR G + LV +
Sbjct: 367 MMVEQRAAVIERFREGKEKVLVTT 390
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 165 bits (421), Expect = 6e-51
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 1 MLD---------HVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKG 50
M+ + +LP Q+LL+SATF +V F +K + DP I L EE TL
Sbjct: 180 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDT 239
Query: 51 VTQYYAFVQER-QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAR 109
+ QYY R +K L L+ + I Q++IFC++ + LA ++++ G+ +
Sbjct: 240 IKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGE 299
Query: 110 MAQAHRNRVFHDFRSGLCRNLVC 132
M R V FR G + LV
Sbjct: 300 MMVEQRAAVIERFREGKEKVLVT 322
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase;
RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo
sapiens} SCOP: c.37.1.19
Length = 172
Score = 136 bits (345), Expect = 4e-42
Identities = 28/87 (32%), Positives = 42/87 (48%)
Query: 47 TLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYI 106
+L G+ QYY +++ +K L L L+ NQ +IF S QR LA+ + E + I
Sbjct: 2 SLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAI 61
Query: 107 HARMAQAHRNRVFHDFRSGLCRNLVCS 133
H M Q R + F+ R LV +
Sbjct: 62 HRGMPQEERLSRYQQFKDFQRRILVAT 88
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 138 bits (349), Expect = 1e-39
Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 11/142 (7%)
Query: 1 ML------DHVISI---LPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKG 50
ML D + I LP QI+L+SATF V+ + E+ + EI L EEL+++G
Sbjct: 271 MLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEG 330
Query: 51 VTQYYAFVQ-ERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAR 109
+ Q Y Q E K + L L+ L I QSIIFC E +A+++T G+ +
Sbjct: 331 IKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGN 390
Query: 110 MAQAHRNRVFHDFRSGLCRNLV 131
+ A R+ + FR G + LV
Sbjct: 391 LEGAQRDAIMDSFRVGTSKVLV 412
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural
genomics, structural consortium, SGC, alternative
initiation, ATP-binding, devel protein; 2.80A {Homo
sapiens}
Length = 175
Score = 128 bits (324), Expect = 6e-39
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 45 ELTLKGVTQYYAFVQERQ-KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCC 103
LTL + QYY + R+ K L ++ + I Q+IIFC + + + L ++ + G+
Sbjct: 2 MLTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQV 61
Query: 104 YYIHARMAQAHRNRVFHDFRSGLCRNLVCS 133
+ + R + FR G + L+ +
Sbjct: 62 SLLSGELTVEQRASIIQRFRDGKEKVLITT 91
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein,
translation; 1.75A {Saccharomyces cerevisiae} SCOP:
c.37.1.19
Length = 165
Score = 124 bits (315), Expect = 9e-38
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 48 LKGVTQYYAFVQERQ-KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYI 106
L+G+ Q+Y V+E + K CL L+ + + Q++IFCN+ ++VE L K+ + I
Sbjct: 1 LEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAI 60
Query: 107 HARMAQAHRNRVFHDFRSGLCRNLVCS 133
++ + Q R+ + +FRSG R L+ +
Sbjct: 61 YSDLPQQERDTIMKEFRSGSSRILIST 87
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 124 bits (313), Expect = 4e-35
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 1 MLDH---------VISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM-EELTLKG 50
MLD V LP + Q++L+SATF V+ + +K + + + L E+ +
Sbjct: 157 MLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDA 216
Query: 51 VTQYYAFVQ-ERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAR 109
+ Q Y + E K L L+ + I SIIF + + +L K+ G+ +H
Sbjct: 217 IKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGD 276
Query: 110 MAQAHRNRVFHDFRSGLCRNLV 131
+ R+R+ DFR G + L+
Sbjct: 277 LQTQERDRLIDDFREGRSKVLI 298
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 96.4 bits (241), Expect = 5e-25
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 12/139 (8%)
Query: 1 MLD--------HVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVT 52
ML+ +++ +++ILL+SAT P + N +K++ D I +
Sbjct: 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK---INANIE 215
Query: 53 QYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQ 112
Q Y V E ++ L L K + ++FC + + + LA + ++G+ IH ++Q
Sbjct: 216 QSYVEVNENERFEALCRLL-KNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQ 274
Query: 113 AHRNRVFHDFRSGLCRNLV 131
+ R +V F+ R L+
Sbjct: 275 SQREKVIRLFKQKKIRILI 293
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 97.6 bits (243), Expect = 7e-25
Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 21/153 (13%)
Query: 2 LDHVISILPHER-------QILLYSATFPLTVKNFMEKHLKDPYEI-----NLMEELTLK 49
L+ + IL + + LL+SAT V+ + + + E +
Sbjct: 196 LETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHE 255
Query: 50 GVTQYYAFVQERQKVHCLNTLFSKLQI------NQSIIFCNSTQRVELLA---KKITELG 100
+ Q ++ K QI ++IIF + + L K +
Sbjct: 256 RIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKD 315
Query: 101 YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS 133
H ++ Q R + F+ LVC+
Sbjct: 316 LPILEFHGKITQNKRTSLVKRFKKDESGILVCT 348
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, HE hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 96.0 bits (239), Expect = 3e-24
Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 21/153 (13%)
Query: 2 LDHVISILPHER-------QILLYSATFPLTVKNFMEKHLKDPYEI-----NLMEELTLK 49
L+ + IL + + LL+SAT V+ + + + E +
Sbjct: 247 LETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHE 306
Query: 50 GVTQYYAFVQERQKVHCLNTLFSKLQI------NQSIIFCNSTQRVELLA---KKITELG 100
+ Q ++ K QI ++IIF + + L K +
Sbjct: 307 RIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKD 366
Query: 101 YCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS 133
H ++ Q R + F+ LVC+
Sbjct: 367 LPILEFHGKITQNKRTSLVKRFKKDESGILVCT 399
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD;
ATP-binding, hydrolase, nucleotide-binding, RNA binding
protein, structural genomics; 1.90A {Sulfolobus
tokodaii}
Length = 337
Score = 93.7 bits (234), Expect = 5e-24
Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 16/139 (11%)
Query: 1 MLD--------HVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVT 52
M + +++ + + L+SAT P ++ ++ + + EI + L V
Sbjct: 141 MFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEA--CIGLANVE 198
Query: 53 QYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQ 112
+ V++ + + + I+F + RV L + + + Q
Sbjct: 199 HKFVHVKDDWRSKVQ--ALRENKDKGVIVFVRTRNRVAKLVRL----FDNAIELRGDLPQ 252
Query: 113 AHRNRVFHDFRSGLCRNLV 131
+ RNR FR G L+
Sbjct: 253 SVRNRNIDAFREGEYDMLI 271
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase;
1.95A {Bacillus subtilis}
Length = 163
Score = 89.1 bits (222), Expect = 1e-23
Identities = 27/88 (30%), Positives = 40/88 (45%)
Query: 44 EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCC 103
LT + + V+E K L + + IIFC + + V L ++ +LGY C
Sbjct: 3 AGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPC 62
Query: 104 YYIHARMAQAHRNRVFHDFRSGLCRNLV 131
IH M Q R V ++F+ G R LV
Sbjct: 63 DKIHGGMIQEDRFDVMNEFKRGEYRYLV 90
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 83.4 bits (207), Expect = 5e-20
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 9 LPHERQILLYSATFPLTVKNFMEKHLKDPYEINL-MEELTLKGVTQYYAFVQERQKVHCL 67
+ E Q L++SATFP ++ + LK+ + + + V Q V + K L
Sbjct: 233 MRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKL 292
Query: 68 NTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLC 127
+ S+ Q + +I+F + + + LA ++E + IH Q+ R + DF++G
Sbjct: 293 IEILSE-QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSM 351
Query: 128 RNLV 131
+ L+
Sbjct: 352 KVLI 355
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 81.0 bits (201), Expect = 4e-19
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 12 ERQILLYSATFPLTVKNFMEKHLKDPYEINL-MEELTLKGVTQYYAFVQERQKVHCLNTL 70
R +++SATFP ++ L + + + T + +TQ +V+E K L L
Sbjct: 210 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDL 269
Query: 71 FSKLQINQS-IIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRN 129
+ + ++F + + + L + GY C IH +Q R H FRSG
Sbjct: 270 LNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 329
Query: 130 LV 131
LV
Sbjct: 330 LV 331
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 74.4 bits (183), Expect = 1e-16
Identities = 18/163 (11%), Positives = 46/163 (28%), Gaps = 39/163 (23%)
Query: 1 MLD--------HVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEIN----------- 41
+L ++ +P E +S + + ++
Sbjct: 151 VLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRP 210
Query: 42 -LMEEL----------TLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVE 90
L +L + +T + ++K+ L +F +IF + + +
Sbjct: 211 LLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVELLEIFRD----GILIFAQTEEEGK 266
Query: 91 LLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS 133
L + + + + + F DF+ G L+
Sbjct: 267 ELYEYLKRFK-----FNVGETWSEFEKNFEDFKVGKINILIGV 304
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity
A; hydrolase inhibitor-hydrolase complex, DEAD box RNA
helicase; 2.90A {Escherichia coli}
Length = 170
Score = 65.7 bits (161), Expect = 2e-14
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 49 KGVTQYYAFVQER-QKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIH 107
K + Q+Y + K L L + + +SI+F +RV LA + E G Y+
Sbjct: 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLE 61
Query: 108 ARMAQAHRNRVFHDFRSGLCRNLV 131
M Q RN G LV
Sbjct: 62 GEMVQGKRNEAIKRLTEGRVNVLV 85
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding
protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Length = 206
Score = 64.5 bits (158), Expect = 8e-14
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEIN 41
++ +I LP RQILLYSATFPL+V+ FM HL+ PYEIN
Sbjct: 167 MEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEIN 206
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer,
ATP-binding, helicase, hydrolase, nucleotide-binding;
2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Length = 212
Score = 62.3 bits (152), Expect = 5e-13
Identities = 19/81 (23%), Positives = 36/81 (44%)
Query: 51 VTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARM 110
+ R ++ L+ L +++++F + E +A+ + LG+ +H +
Sbjct: 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDL 65
Query: 111 AQAHRNRVFHDFRSGLCRNLV 131
+Q R RV FR G R LV
Sbjct: 66 SQGERERVLGAFRQGEVRVLV 86
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA
recognition motif, ATP-BIND helicase,
nucleotide-binding; 2.80A {Thermus thermophilus}
Length = 300
Score = 62.1 bits (151), Expect = 1e-12
Identities = 20/81 (24%), Positives = 36/81 (44%)
Query: 51 VTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARM 110
+ R ++ L+ L +++++F + E +A+ + LG+ +H M
Sbjct: 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDM 62
Query: 111 AQAHRNRVFHDFRSGLCRNLV 131
+Q R RV FR G R LV
Sbjct: 63 SQGERERVMGAFRQGEVRVLV 83
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 2.51A {Homo
sapiens}
Length = 300
Score = 61.7 bits (150), Expect = 2e-12
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 1 MLDH---------VISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEE 45
M+ + +LP Q+LL+SATF +V F +K + DP I L E
Sbjct: 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE 300
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Length = 230
Score = 61.1 bits (149), Expect = 2e-12
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINL 42
++ + S LP +Q+L SAT+P + N + K+++DP + L
Sbjct: 188 INWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics,
structural genomic consortium, SGC, hydrolase; 2.60A
{Homo sapiens}
Length = 191
Score = 58.4 bits (142), Expect = 1e-11
Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 9/110 (8%)
Query: 30 MEKHLKDPYEINLMEELTLKG--------VTQYYAFVQERQKVHCLNTLFSKLQINQSII 81
M H ++L E V Q +V+E K+ L K +I
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKTP-PPVLI 59
Query: 82 FCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLV 131
F V+ + + + G IH Q R + FR G LV
Sbjct: 60 FAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLV 109
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family,
gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 1qva_A
Length = 224
Score = 56.4 bits (137), Expect = 1e-10
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 1 MLDH--------VISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINL-MEELTLK 49
ML + ++LP Q++L SAT P V K +++P I + +ELTL+
Sbjct: 167 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLE 224
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation,
nucleotide-binding, hydrolase, RNA-binding, ATP-binding,
DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Length = 185
Score = 53.7 bits (130), Expect = 5e-10
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 51 VTQYYAFVQERQKVHCLNTLFSKLQINQ-SIIFCNSTQRVELLAKKITELGYCCYYIHAR 109
+TQ +V+E K L L + + +++F + + + L + GY C IH
Sbjct: 20 ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 79
Query: 110 MAQAHRNRVFHDFRSGLCRNLV 131
+Q R H FRSG LV
Sbjct: 80 RSQRDREEALHQFRSGKSPILV 101
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX,
structural genomics, helic binding, HOST-virus
interaction, hydrolase; 1.85A {Homo sapiens} PDB:
2g9n_A*
Length = 237
Score = 53.0 bits (128), Expect = 2e-09
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 1 MLDH--------VISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEE 45
ML + L Q++L SAT P V +K ++DP I + +E
Sbjct: 185 MLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE 237
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus
stearothermophilus} SCOP: c.37.1.19
Length = 219
Score = 48.7 bits (117), Expect = 6e-08
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 8/48 (16%)
Query: 1 MLD--------HVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEI 40
MLD + + +P + Q+L++SAT P +K F++K++++P +
Sbjct: 162 MLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFV 209
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic
resolution, AMP complex, ribosome biogenesis,
thermophilic, hydrolase; HET: AMP; 1.20A {Thermus
thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A*
3mwl_A* 3nbf_A* 3nej_A
Length = 207
Score = 48.3 bits (116), Expect = 7e-08
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 1 MLD--------HVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEI 40
ML ++S P RQ LL+SAT P K E+++K+P I
Sbjct: 156 MLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLI 203
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA
processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP:
c.37.1.19
Length = 220
Score = 46.8 bits (112), Expect = 2e-07
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 1 MLDHVISIL---PHERQILLYSATFPLTVKNFMEKHLKDPYEI 40
M V I PHE+Q++++SAT ++ K ++DP EI
Sbjct: 176 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural
genomics, structural genomic consortium, SGC, hydrolase;
HET: ADP; 2.15A {Homo sapiens}
Length = 236
Score = 46.8 bits (112), Expect = 3e-07
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEE 45
++ VI LP +RQ LL+SAT +VK+ LK+P + + E+
Sbjct: 192 MNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEK 235
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX,
structural genomics, structural genomi consortium, SGC,
ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Length = 228
Score = 46.8 bits (112), Expect = 3e-07
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 1 MLD--------HVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEIN 41
MLD ++ + +RQ ++ SAT+P TV+ +LKDP +
Sbjct: 179 MLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural
genomics, structural GEN consortium, SGC, ATP-binding,
hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Length = 249
Score = 45.4 bits (108), Expect = 8e-07
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEI 40
+D ++ ++P +R+ L+SAT V+ LK+P +
Sbjct: 207 VDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKC 245
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding,
hydrolase, nucleotide- RNA-binding, methylation, mRNA
processing, mRNA S nucleus; HET: ADP; 2.60A {Homo
sapiens}
Length = 242
Score = 44.8 bits (107), Expect = 1e-06
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 1 MLD--------HVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEIN 41
MLD ++ + +RQ L++SAT+P V+ E LKD IN
Sbjct: 188 MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN 236
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural
genomics, structural GEN consortium, SGC, rRNA,
ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Length = 245
Score = 43.3 bits (103), Expect = 5e-06
Identities = 7/53 (13%), Positives = 22/53 (41%), Gaps = 12/53 (22%)
Query: 1 MLDH------------VISILPHERQILLYSATFPLTVKNFMEKHLKDPYEIN 41
+ + ++ H+ + ++SATF V+ + + +L + ++
Sbjct: 187 LFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVS 239
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 40.0 bits (94), Expect = 1e-04
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 14/89 (15%)
Query: 38 YEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQS-IIFCNSTQRVELLAKKI 96
YE+ T + + R K QS II+C S + E + +
Sbjct: 241 YEVRQKPSNTEDFIEDIVKLINGRYK-------------GQSGIIYCFSQKDSEQVTVSL 287
Query: 97 TELGYCCYYIHARMAQAHRNRVFHDFRSG 125
LG HA + + V + +
Sbjct: 288 QNLGIHAGAYHANLEPEDKTTVHRKWSAN 316
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics,
structural genomics consort ATP-binding, hydrolase,
nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Length = 262
Score = 38.8 bits (91), Expect = 2e-04
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHL-KDPYEI 40
L +I +LP RQ +L+SAT V++ L K+P +
Sbjct: 222 LKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYV 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 3e-04
Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 15/105 (14%)
Query: 2 LDHVISILPHERQILLYSATFPL----TVKNFMEKHLKDPYEINLMEEL---TLKGVTQY 54
+DH+I L T V+ F+E+ L+ Y+ LM + +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMT 109
Query: 55 YAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL 99
++++R +++ N +F+K +++ Q L + + EL
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRL-------QPYLKLRQALLEL 147
Score = 28.3 bits (62), Expect = 1.1
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 22/84 (26%)
Query: 67 LNTLFSKLQINQSI---IFCNSTQRVELLAKKITEL----GYC-CYYI-----HARMAQA 113
L L ++ N + N R+ + ++ L Y C + +A+ A
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 114 HRNRVFHDFRSGLCRNLVCSGDSS 137
F + C+ L+ +
Sbjct: 262 -----F-NLS---CKILLTTRFKQ 276
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA,
N project on protein structural and functional analyses;
2.40A {Dugesia japonica} SCOP: c.37.1.19
Length = 253
Score = 38.3 bits (90), Expect = 3e-04
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 10 PHERQILLYSATFPLTVKNFMEKHLKDPYEIN 41
RQ L++SATFP ++ L + +
Sbjct: 207 GINRQTLMFSATFPKEIQKLAADFLYNYIFMT 238
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 34.8 bits (81), Expect = 0.005
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 54 YYAFVQERQKVHCLNTLFSKLQINQS-IIFCNSTQRVELLAKKITELGY-CCYYIHARMA 111
Y +++ + + L + + Q +S II+CNS +VE A ++ G Y HA +
Sbjct: 214 RYMLMEKFKPLDQLMR-YVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAY-HAGLE 271
Query: 112 QAHRNRVFHDF 122
R V F
Sbjct: 272 NNVRADVQEKF 282
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 34.4 bits (78), Expect = 0.009
Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 17/115 (14%)
Query: 30 MEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTL----FSKLQINQSIIFCNS 85
++ D + L Q + K+ L + + Q ++ I+F N
Sbjct: 316 SKEIFSDKRMKKAISLLV-----QAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNY 370
Query: 86 TQRVELLAKKITELGYCCYYIH--------ARMAQAHRNRVFHDFRSGLCRNLVC 132
+ + + ++ + G ++Q + + +F G LV
Sbjct: 371 RETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVA 425
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 32.1 bits (73), Expect = 0.055
Identities = 20/155 (12%), Positives = 47/155 (30%), Gaps = 36/155 (23%)
Query: 14 QILLYSATFP--LTVKNFMEKHLKDPYE--INLMEELTLKGVTQYYAFVQERQKVHCLNT 69
+++ SAT P + +++ + L+E + +G + + +
Sbjct: 174 RVIGLSATAPNVTEIAEWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEE 233
Query: 70 LFSKLQIN--QSIIFCNSTQRVELLAKKITE----------------------------- 98
L + ++F ++ + E A K++
Sbjct: 234 LVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAE 293
Query: 99 -LGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVC 132
+ + HA + R V FR G + +V
Sbjct: 294 CVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVA 328
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 30.2 bits (68), Expect = 0.21
Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 33/89 (37%)
Query: 78 QSIIFCNSTQRVELLAKKITE---------------------------------LGYCCY 104
++IF N ++ E +A ++++ +
Sbjct: 239 GALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVA 298
Query: 105 YIHARMAQAHRNRVFHDFRSGLCRNLVCS 133
+ HA + + R V +FR G+ + +V +
Sbjct: 299 FHHAGLGRDERVLVEENFRKGIIKAVVAT 327
>3q34_A YCEI-like family protein; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics, nysgxrc; HET: UQ8; 1.70A
{Pseudomonas syringae}
Length = 184
Score = 27.2 bits (60), Expect = 1.5
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 11 HERQILLYSATFP-------LTVKNFMEKHLKDPYEINLMEELTLKGVTQ 53
R+ + FP L ++ E+ L ++L+G +
Sbjct: 63 RLREQVFQVHKFPVAQINAQLDMRPINNLAPGAQLELRLPLTVSLRGKSH 112
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 27.4 bits (61), Expect = 1.6
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 19/111 (17%)
Query: 5 VISILPHERQILLYSATFP--------LTVKNF--------MEKHLKDPYEINLMEELTL 48
++I R +L SAT L + + + + P +
Sbjct: 168 SVTIRAKRRNLLALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIF 227
Query: 49 KGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL 99
K T + + L++L Q ++F NS + E A KI
Sbjct: 228 KDNTTKKVHGDDAIIAYTLDSLSKN---GQVLVFRNSRKMAESTALKIANY 275
>2x32_A X158, cellulose-binding protein; carbohydrate-binding protein,
oxidoreduction, marine bacteri polyisoprenoid transport;
HET: OTP; 1.55A {Saccharophagus degradans} PDB: 2x34_A*
Length = 179
Score = 27.2 bits (60), Expect = 1.7
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 20 ATFPLTVKNFMEKHLK--DPYEINLMEELTLKGVTQ 53
AT + V L + +++ L L GV
Sbjct: 80 ATVTVPVDLAAVAGLAVGEDMLVDVSATLDLHGVPG 115
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein
serine/threonine kinase, S based drug design, MAP3K14,
transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A*
4g3c_A 4dn5_A*
Length = 336
Score = 27.0 bits (60), Expect = 2.1
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 39 EINLMEELTLKGVTQYYAFVQERQKVH 65
E+ L+ + Y V+E V+
Sbjct: 100 ELVACAGLSSPRIVPLYGAVREGPWVN 126
>1giq_A IOTA toxin component IA; enzymatic component; HET: NAD; 1.80A
{Clostridium perfringens} SCOP: d.166.1.1 d.166.1.1
PDB: 1gir_A* 3buz_A*
Length = 413
Score = 26.8 bits (58), Expect = 2.9
Identities = 10/56 (17%), Positives = 20/56 (35%)
Query: 27 KNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIF 82
K +E + KD +I+ + ++ L SK +I++ I
Sbjct: 36 KEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYKNLRNAISKNKIDKPINV 91
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase,
metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Length = 295
Score = 26.1 bits (58), Expect = 4.1
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 13/56 (23%)
Query: 39 EINLMEELTLKGVTQYYAFVQERQKV-------------HCLNTLFSKLQINQSII 81
EI L + L K + QY E + L + + L+ N+ I
Sbjct: 69 EIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTI 124
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 25.5 bits (56), Expect = 7.1
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 82 FCNSTQRVELLAKKITELGYCCYYI----HARMAQAHRNRVFHDF 122
F + + LA+ + GY H + FHD+
Sbjct: 49 FTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDW 93
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation,
cofilin-like, cytoskeleton, actin-binding, protein
tyrosine kinase-9; 1.70A {Homo sapiens}
Length = 134
Score = 24.5 bits (53), Expect = 9.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 13 RQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQY 54
R +LY+AT K F H+KD + ++L+ G ++
Sbjct: 93 RLKMLYAATRATVKKEFGGGHIKDELFGTVKDDLSFAGYQKH 134
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.137 0.415
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,035,905
Number of extensions: 103486
Number of successful extensions: 428
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 63
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (23.9 bits)