RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13287
(140 letters)
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 53.1 bits (126), Expect = 4e-10
Identities = 28/42 (66%), Positives = 32/42 (76%)
Query: 3 DHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLME 44
+ ++S LP Q LL+SATFPLTVK FM KHL PYEINLME
Sbjct: 165 EQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME 206
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 52.2 bits (124), Expect = 5e-10
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 44 EELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYC 102
+ELTL+G+ Q++ V+ E K L L+ L I Q++IFCN+ ++V+ L +K+ E +
Sbjct: 1 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT 60
Query: 103 CYYIHARMAQAHRNRVFHDFRSGLCRNLVCS 133
+H M Q R + +FRSG R L+ +
Sbjct: 61 VSSMHGDMPQKERESIMKEFRSGASRVLIST 91
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 52.4 bits (124), Expect = 6e-10
Identities = 71/88 (80%), Positives = 78/88 (88%)
Query: 45 ELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCY 104
ELTLKG+TQYYAFV+ERQK+HCLNTLFSKLQINQ+IIFCNST RVELLAKKIT+LGY CY
Sbjct: 1 ELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCY 60
Query: 105 YIHARMAQAHRNRVFHDFRSGLCRNLVC 132
Y HARM Q RN+VFH+FR G R LVC
Sbjct: 61 YSHARMKQQERNKVFHEFRQGKVRTLVC 88
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 52.7 bits (125), Expect = 8e-10
Identities = 25/41 (60%), Positives = 32/41 (78%)
Query: 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEIN 41
+++ +I LP RQILLYSATFPL+V+ FM HL+ PYEIN
Sbjct: 166 IMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEIN 206
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 49.1 bits (116), Expect = 1e-08
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEI 40
+ + + PHE+Q++++SAT ++ K ++DP EI
Sbjct: 167 VQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 205
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 48.7 bits (115), Expect = 2e-08
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINL 42
+ V LP Q++L SAT P + K + DP I +
Sbjct: 180 IYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV 220
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 48.7 bits (115), Expect = 2e-08
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEI 40
+ + ++LP Q++L SAT P V K +++P I
Sbjct: 172 IYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRI 210
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 47.7 bits (112), Expect = 3e-08
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 46 LTLKGVTQYYAFVQERQ-KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCY 104
LTL + QYY + R+ K L ++ + I Q+IIFC + + + L ++ + G+
Sbjct: 1 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVS 60
Query: 105 YIHARMAQAHRNRVFHDFRSGLCRNLVC 132
+ + R + FR G + L+
Sbjct: 61 LLSGELTVEQRASIIQRFRDGKEKVLIT 88
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 48.1 bits (113), Expect = 4e-08
Identities = 12/43 (27%), Positives = 31/43 (72%)
Query: 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINLM 43
+D + + +P + Q+L++SAT P +K F++K++++P ++++
Sbjct: 167 DVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 209
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 47.5 bits (112), Expect = 5e-08
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINL 42
+ + L Q++L SAT P V +K ++DP I +
Sbjct: 175 QIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILV 216
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 46.7 bits (110), Expect = 1e-07
Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 58 VQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNR 117
+ + L+++ KL II+ + + E + + + + A +
Sbjct: 8 AVNDESISTLSSILEKLG-TGGIIYARTGEEAEEIYESLKN------KFRIGIVTATKKG 60
Query: 118 VFHDFRSGLCRNLVCSGDSSAMM 140
+ F G +L+ + +
Sbjct: 61 DYEKFVEGEIDHLIGTAHYYGTL 83
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 46.5 bits (110), Expect = 2e-07
Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 73 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHR----------NRVFHDF 122
++ + +IFC+S ++ + LA K+ LG + + +
Sbjct: 33 VIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTG 92
Query: 123 RSGLCRNLVCSGDSSAMM 140
+G +++
Sbjct: 93 FTGDFDSVIDCNTCVTQT 110
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 44.3 bits (104), Expect = 6e-07
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEINL 42
++ +++ +++ILL+SAT P + N +K++ D I
Sbjct: 165 DVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA 206
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 42.6 bits (99), Expect = 3e-06
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 2 LDHVISILPHERQILLYSATFPLTVKNFMEKHLKDPYEIN 41
++ RQ L++SATFP ++ L + +
Sbjct: 197 IEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMT 236
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 41.6 bits (96), Expect = 5e-06
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 50 GVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAR 109
G+ QYY +++ +K L L L+ NQ +IF S QR LA+ + E + IH
Sbjct: 1 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRG 60
Query: 110 MAQAHRNRVFHDFRSGLCRNLVCS 133
M Q R + F+ R LV +
Sbjct: 61 MPQEERLSRYQQFKDFQRRILVAT 84
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 42.2 bits (98), Expect = 5e-06
Identities = 11/124 (8%), Positives = 33/124 (26%), Gaps = 17/124 (13%)
Query: 10 PHERQILLYSATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNT 69
E + +AT P + F + + + + ER
Sbjct: 129 MGEAAGIFMTATPPGSRDPFPQSNAP---------------IMDEEREIPERSWNSGHEW 173
Query: 70 LFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRN 129
+ +++ F S + +A + + G + + + + + +
Sbjct: 174 V--TDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTT 231
Query: 130 LVCS 133
+
Sbjct: 232 DISE 235
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 38.9 bits (89), Expect = 5e-05
Identities = 17/79 (21%), Positives = 32/79 (40%)
Query: 54 YYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQA 113
Y +++ + + L + + II+CNS +VE A ++ G HA +
Sbjct: 8 RYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENN 67
Query: 114 HRNRVFHDFRSGLCRNLVC 132
R V F+ + +V
Sbjct: 68 VRADVQEKFQRDDLQIVVA 86
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 36.5 bits (83), Expect = 3e-04
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 51 VTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARM 110
+ Q Y V E ++ L L + ++FC + + + LA + ++G+ IH +
Sbjct: 4 IEQSYVEVNENERFEALCRLLKNKEF-YGLVFCKTKRDTKELASMLRDIGFKAGAIHGDL 62
Query: 111 AQAHRNRVFHDFRSGLCRNLVCSGDSSAMM 140
+Q+ R +V F+ R L+ + S +
Sbjct: 63 SQSQREKVIRLFKQKKIRILIATDVMSRGI 92
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 35.1 bits (80), Expect = 8e-04
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 3/93 (3%)
Query: 51 VTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARM 110
+ + + ++ + +IFC+S ++ + LA K+ LG + +
Sbjct: 10 IEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGL 69
Query: 111 AQAHRNRVFHDFRSG---LCRNLVCSGDSSAMM 140
+ L DS
Sbjct: 70 DVSVIPTNGDVVVVATDALMTGFTGDFDSVIDC 102
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 35.1 bits (80), Expect = 0.001
Identities = 12/56 (21%), Positives = 22/56 (39%)
Query: 78 QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCS 133
++++ + + E L + E G Y+H + R + D R G LV
Sbjct: 33 RTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI 88
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 33.2 bits (75), Expect = 0.006
Identities = 12/58 (20%), Positives = 23/58 (39%)
Query: 77 NQSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRSGLCRNLVCSG 134
++++ + + E L + E G Y+H+ + R + D R G LV
Sbjct: 32 ERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGIN 89
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 33.3 bits (75), Expect = 0.006
Identities = 11/111 (9%), Positives = 35/111 (31%), Gaps = 8/111 (7%)
Query: 31 EKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVE 90
K + + L ++ + + + + Q ++ I+F N + +
Sbjct: 116 SKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAK 175
Query: 91 LLAKKITELGYCCYYIHARMAQAHR--------NRVFHDFRSGLCRNLVCS 133
+ ++ + G + ++ + + +F G LV +
Sbjct: 176 KIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT 226
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 31.1 bits (70), Expect = 0.033
Identities = 4/44 (9%), Positives = 15/44 (34%)
Query: 78 QSIIFCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHD 121
+ F S + ++A + + G ++ + + +
Sbjct: 38 PTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQK 81
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 28.3 bits (62), Expect = 0.26
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 1 MLDHVISILPHERQILLYSATFPLTVKNFMEKHL 34
L + +++ +AT K + + L
Sbjct: 193 DLKTKSWVGEARGCLMVSTATAKKGKKAELFRQL 226
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 28.1 bits (61), Expect = 0.37
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 9 LPHERQILLYSATFPLTVKNFMEK--HLKDP 37
+ +AT T + + + L DP
Sbjct: 171 RFPTLPFMALTATADDTTRQDIVRLLGLNDP 201
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 26.4 bits (57), Expect = 1.3
Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 42 LMEELTLKGVTQYYAFVQERQKVHCLNTLFSKL--QINQSIIFCNSTQRVELLAKKITEL 99
L+E + +G + + + L + + ++F ++ + E A K++ +
Sbjct: 4 LVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAI 63
Query: 100 G 100
Sbjct: 64 T 64
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 24.5 bits (52), Expect = 5.1
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 1 MLDHVISILPHERQILLYSATFP 23
+L + + +++ SAT P
Sbjct: 161 ILVTKMRRMNKALRVIGLSATAP 183
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.137 0.415
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 505,600
Number of extensions: 20962
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 38
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (22.4 bits)