BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13288
         (200 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
          Length = 400

 Score =  103 bits (256), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 47/54 (87%), Positives = 50/54 (92%)

Query: 136 ATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSK 189
           ATFPLTVK FM KHL  PYEINLMEELTLKG+TQYYAFV+ERQK+HCLNTLFSK
Sbjct: 202 ATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSK 255


>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
           With An Edc3-Fdf Peptide
 pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
           With An Edc3-Fdf Peptide
 pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
           With An Edc3-Fdf Peptide
 pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
           With An Edc3-Fdf Peptide
          Length = 193

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 38/39 (97%)

Query: 151 KDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSK 189
           +DPYEINLMEELTLKGVTQYYA+V ERQKVHCLNTLFS+
Sbjct: 3   QDPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSR 41


>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
 pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
 pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
 pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
          Length = 395

 Score = 38.5 bits (88), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 126 LEPKTKVSAI-ATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQ-KVHC 182
           L P T+V  + AT P  V     K +++P  I +  +ELTL+G+ Q+Y  V+E + K  C
Sbjct: 191 LPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYEC 250

Query: 183 LNTLFSKCCSLLGVFTCT 200
           L  L+        V  C 
Sbjct: 251 LTDLYDSISVTQAVIFCN 268


>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
           Human Dead-Box Protein
 pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
           Human Dead-Box Protein
          Length = 206

 Score = 38.5 bits (88), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 15/22 (68%), Positives = 18/22 (81%)

Query: 136 ATFPLTVKNFMEKHLKDPYEIN 157
           ATFPL+V+ FM  HL+ PYEIN
Sbjct: 185 ATFPLSVQKFMNSHLEKPYEIN 206


>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score = 37.0 bits (84), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 13/125 (10%)

Query: 78  GDIFNAGSVSRITRHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKVSAI-A 136
           G +F+   + R +  T A+   V    D    + F  QI     V R L P T+V  I A
Sbjct: 128 GRVFDM--IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY---DVYRYLPPATQVVLISA 182

Query: 137 TFPLTVKNFMEKHLKDPYEINL-MEELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLG 195
           T P  V     K + DP  I +  +ELTL+G+ Q++  V ER++       F   C L  
Sbjct: 183 TLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV-EREEWK-----FDTLCDLYD 236

Query: 196 VFTCT 200
             T T
Sbjct: 237 TLTIT 241


>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
 pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
 pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
 pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
          Length = 391

 Score = 36.6 bits (83), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 13/125 (10%)

Query: 78  GDIFNAGSVSRITRHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKVSAI-A 136
           G +F+   + R +  T A+   V    D    + F  QI     V R L P T+V  I A
Sbjct: 143 GRVFDM--IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY---DVYRYLPPATQVVLISA 197

Query: 137 TFPLTVKNFMEKHLKDPYEINL-MEELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLG 195
           T P  +     K + DP  I +  +ELTL+G+ Q++  V ER++       F   C L  
Sbjct: 198 TLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV-EREEWK-----FDTLCDLYD 251

Query: 196 VFTCT 200
             T T
Sbjct: 252 TLTIT 256


>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
 pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
          Length = 394

 Score = 36.6 bits (83), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 126 LEPKTKVSAI-ATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQ-KVHC 182
           L P T+V  + AT P  V     K  ++P  I +  +ELTL+G+ Q+Y  V+E + K  C
Sbjct: 190 LPPTTQVVLLSATXPNDVLEVTTKFXRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYEC 249

Query: 183 LNTLFSKCCSLLGVFTCT 200
           L  L+        V  C 
Sbjct: 250 LTDLYDSISVTQAVIFCN 267


>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score = 36.6 bits (83), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 13/125 (10%)

Query: 78  GDIFNAGSVSRITRHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKVSAI-A 136
           G +F+   + R +  T A+   V    D    + F  QI     V R L P T+V  I A
Sbjct: 128 GRVFDM--IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY---DVYRYLPPATQVVLISA 182

Query: 137 TFPLTVKNFMEKHLKDPYEINL-MEELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLG 195
           T P  +     K + DP  I +  +ELTL+G+ Q++  V ER++       F   C L  
Sbjct: 183 TLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV-EREEWK-----FDTLCDLYD 236

Query: 196 VFTCT 200
             T T
Sbjct: 237 TLTIT 241


>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
 pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
          Length = 411

 Score = 36.6 bits (83), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 13/125 (10%)

Query: 78  GDIFNAGSVSRITRHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKVSAI-A 136
           G +F+   + R +  T A+   V    D    + F  QI     V R L P T+V  I A
Sbjct: 165 GRVFDM--IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY---DVYRYLPPATQVVLISA 219

Query: 137 TFPLTVKNFMEKHLKDPYEINL-MEELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLG 195
           T P  +     K + DP  I +  +ELTL+G+ Q++  V ER++       F   C L  
Sbjct: 220 TLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV-EREEWK-----FDTLCDLYD 273

Query: 196 VFTCT 200
             T T
Sbjct: 274 TLTIT 278


>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
 pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
          Length = 413

 Score = 36.6 bits (83), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 13/125 (10%)

Query: 78  GDIFNAGSVSRITRHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKVSAI-A 136
           G +F+   + R +  T A+   V    D    + F  QI     V R L P T+V  I A
Sbjct: 165 GRVFDM--IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY---DVYRYLPPATQVVLISA 219

Query: 137 TFPLTVKNFMEKHLKDPYEINL-MEELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLG 195
           T P  +     K + DP  I +  +ELTL+G+ Q++  V ER++       F   C L  
Sbjct: 220 TLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV-EREEWK-----FDTLCDLYD 273

Query: 196 VFTCT 200
             T T
Sbjct: 274 TLTIT 278


>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
           A Resolution
          Length = 410

 Score = 36.6 bits (83), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 13/125 (10%)

Query: 78  GDIFNAGSVSRITRHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKVSAI-A 136
           G +F+   + R +  T A+   V    D    + F  QI     V R L P T+V  I A
Sbjct: 164 GRVFDM--IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY---DVYRYLPPATQVVLISA 218

Query: 137 TFPLTVKNFMEKHLKDPYEINL-MEELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLG 195
           T P  +     K + DP  I +  +ELTL+G+ Q++  V ER++       F   C L  
Sbjct: 219 TLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV-EREEWK-----FDTLCDLYD 272

Query: 196 VFTCT 200
             T T
Sbjct: 273 TLTIT 277


>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
 pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
 pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
 pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
          Length = 388

 Score = 34.7 bits (78), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 11/99 (11%)

Query: 104 VDRKFGQIFNGQILVPKHVLRSLEPKTKVSAI-ATFPLTVKNFMEKHLKDPYEINLM-EE 161
            D    + F  QI     + + L   T+V  + AT P  V    +K ++DP  I +  EE
Sbjct: 166 ADEMLSRGFKDQIY---DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 222

Query: 162 LTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200
           LTL+G+ Q+Y  V ER++   L+TL    C L    T T
Sbjct: 223 LTLEGIRQFYINV-EREEWK-LDTL----CDLYETLTIT 255


>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
 pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
          Length = 414

 Score = 34.7 bits (78), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 11/99 (11%)

Query: 104 VDRKFGQIFNGQILVPKHVLRSLEPKTKVSAI-ATFPLTVKNFMEKHLKDPYEINLM-EE 161
            D    + F  QI     + + L   T+V  + AT P  V    +K ++DP  I +  EE
Sbjct: 192 ADEMLSRGFKDQIY---DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 248

Query: 162 LTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200
           LTL+G+ Q+Y  V ER++   L+TL    C L    T T
Sbjct: 249 LTLEGIRQFYINV-EREEWK-LDTL----CDLYETLTIT 281


>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
           With The Dead- Box Helicase Ddx19
 pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
           With The Dead- Box Helicase Ddx19
          Length = 479

 Score = 34.3 bits (77), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 136 ATFPLTVKNFMEKHLKDPYEINL-MEELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLL 194
           ATF  +V  F +K + DP  I L  EE TL  + QYY     R      +  F   C+L 
Sbjct: 275 ATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR------DEKFQALCNLY 328

Query: 195 GVFT 198
           G  T
Sbjct: 329 GAIT 332


>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
           Atp-analogue And Rna
          Length = 424

 Score = 33.9 bits (76), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 136 ATFPLTVKNFMEKHLKDPYEINL-MEELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLL 194
           ATF  +V  F +K + DP  I L  EE TL  + QYY     R      +  F   C+L 
Sbjct: 224 ATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR------DEKFQALCNLY 277

Query: 195 GVFT 198
           G  T
Sbjct: 278 GAIT 281


>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
           Rna
 pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
           Rna
          Length = 412

 Score = 33.9 bits (76), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 136 ATFPLTVKNFMEKHLKDPYEINL-MEELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLL 194
           ATF  +V  F +K + DP  I L  EE TL  + QYY     R      +  F   C+L 
Sbjct: 208 ATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR------DEKFQALCNLY 261

Query: 195 GVFT 198
           G  T
Sbjct: 262 GAIT 265


>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
 pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
          Length = 445

 Score = 33.9 bits (76), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 136 ATFPLTVKNFMEKHLKDPYEINL-MEELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLL 194
           ATF  +V  F +K + DP  I L  EE TL  + QYY     R      +  F   C+L 
Sbjct: 245 ATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR------DEKFQALCNLY 298

Query: 195 GVFT 198
           G  T
Sbjct: 299 GAIT 302


>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
          Length = 386

 Score = 30.0 bits (66), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 136 ATFPLTVKNFMEKHLKDPYEINLMEE--LTLKGVTQYYAFVQERQK 179
           AT    ++    K ++DP EI + +E  LTL G+ QYY  +++ +K
Sbjct: 192 ATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEK 237


>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
          Length = 391

 Score = 30.0 bits (66), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 136 ATFPLTVKNFMEKHLKDPYEINLMEE--LTLKGVTQYYAFVQERQK 179
           AT    ++    K ++DP EI + +E  LTL G+ QYY  +++ +K
Sbjct: 192 ATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEK 237


>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
          Length = 390

 Score = 29.6 bits (65), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 136 ATFPLTVKNFMEKHLKDPYEINLMEE--LTLKGVTQYYAFVQERQK 179
           AT    ++    K ++DP EI + +E  LTL G+ QYY  +++ +K
Sbjct: 191 ATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEK 236


>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
           Oxidoreductase Mpd1p
 pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
           Oxidoreductase Mpd1p
          Length = 298

 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 77  KGDIFNAGSVSRITRHTFAMTPSVGPIVDR 106
           +G+  N   +S+  R TF++TP+ GP   R
Sbjct: 249 EGNSINKNDISKFLRDTFSITPNEGPFSRR 278


>pdb|2Z0L|A Chain A, Crystal Structure Of Ebv-Dna Polymerase Accessory Protein
           Bmrf1
 pdb|2Z0L|B Chain B, Crystal Structure Of Ebv-Dna Polymerase Accessory Protein
           Bmrf1
 pdb|2Z0L|C Chain C, Crystal Structure Of Ebv-Dna Polymerase Accessory Protein
           Bmrf1
 pdb|2Z0L|D Chain D, Crystal Structure Of Ebv-Dna Polymerase Accessory Protein
           Bmrf1
 pdb|2Z0L|E Chain E, Crystal Structure Of Ebv-Dna Polymerase Accessory Protein
           Bmrf1
 pdb|2Z0L|F Chain F, Crystal Structure Of Ebv-Dna Polymerase Accessory Protein
           Bmrf1
 pdb|2Z0L|G Chain G, Crystal Structure Of Ebv-Dna Polymerase Accessory Protein
           Bmrf1
 pdb|2Z0L|H Chain H, Crystal Structure Of Ebv-Dna Polymerase Accessory Protein
           Bmrf1
          Length = 318

 Score = 27.3 bits (59), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 42  CVIFREVLLKISSWEKVNLPLYVESQGTSKFRSFGKGDIFNAGSVSRITRHTFAMTPSVG 101
           CV+ +E+    S+ E+ +L  Y   QG S+   F K        VS+ + HT A+ P   
Sbjct: 99  CVLGKELF--GSAVEQASLQFYKRPQGGSR-PEFVKLTXEYDDKVSK-SHHTCALXPYXP 154

Query: 102 PIVDRKFGQIFNGQILVPKHVLRSLE 127
           P  DR   +   GQ+L+      SL+
Sbjct: 155 PASDRLRNEQXIGQVLLXPKTASSLQ 180


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,400,028
Number of Sequences: 62578
Number of extensions: 201354
Number of successful extensions: 716
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 22
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)