Query psy13288
Match_columns 200
No_of_seqs 131 out of 1179
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 15:38:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0326|consensus 100.0 2E-41 4.3E-46 283.4 11.0 181 7-200 113-330 (459)
2 KOG0328|consensus 100.0 9.6E-39 2.1E-43 263.6 13.3 180 8-200 56-274 (400)
3 KOG0330|consensus 100.0 1.2E-39 2.7E-44 278.0 6.9 184 8-200 100-308 (476)
4 KOG0331|consensus 100.0 1E-36 2.2E-41 271.6 10.2 180 13-200 135-349 (519)
5 COG0513 SrmB Superfamily II DN 100.0 7.1E-36 1.5E-40 270.8 11.4 184 8-200 58-281 (513)
6 KOG0343|consensus 100.0 3E-35 6.5E-40 259.9 9.3 185 8-200 98-321 (758)
7 KOG0345|consensus 100.0 1E-33 2.2E-38 246.4 9.9 188 8-199 35-262 (567)
8 KOG0342|consensus 100.0 2.4E-32 5.3E-37 238.7 13.2 180 13-200 126-338 (543)
9 KOG0346|consensus 100.0 1.3E-32 2.8E-37 238.0 8.4 185 7-200 47-276 (569)
10 KOG0338|consensus 100.0 9.4E-32 2E-36 236.1 7.2 181 15-199 227-433 (691)
11 KOG0333|consensus 100.0 4E-30 8.6E-35 226.4 14.6 183 15-200 291-525 (673)
12 KOG0327|consensus 100.0 3.9E-31 8.5E-36 225.5 6.0 175 16-200 73-271 (397)
13 KOG4284|consensus 100.0 2.3E-30 5E-35 232.4 11.0 185 7-200 53-280 (980)
14 KOG0341|consensus 100.0 2.5E-31 5.5E-36 227.5 1.6 184 12-199 213-428 (610)
15 KOG0335|consensus 100.0 1.3E-29 2.7E-34 223.4 10.3 178 14-200 119-345 (482)
16 KOG0339|consensus 100.0 4.7E-29 1E-33 219.1 12.3 177 16-200 270-476 (731)
17 KOG0336|consensus 100.0 3.8E-29 8.2E-34 215.3 11.4 181 16-200 267-473 (629)
18 KOG0340|consensus 100.0 7.6E-29 1.6E-33 210.0 11.8 186 7-200 35-262 (442)
19 KOG0332|consensus 100.0 5.8E-29 1.2E-33 211.9 9.9 182 10-200 133-338 (477)
20 KOG0329|consensus 100.0 3.6E-29 7.7E-34 204.7 6.7 175 17-199 90-290 (387)
21 KOG0348|consensus 100.0 3.6E-29 7.9E-34 220.8 3.9 192 8-200 166-433 (708)
22 PRK11776 ATP-dependent RNA hel 99.9 1.2E-27 2.5E-32 214.4 10.8 176 16-200 51-250 (460)
23 KOG0337|consensus 99.9 7.9E-28 1.7E-32 207.5 8.8 189 8-200 50-269 (529)
24 PRK11634 ATP-dependent RNA hel 99.9 2.6E-27 5.7E-32 219.1 10.6 177 15-200 52-253 (629)
25 PTZ00110 helicase; Provisional 99.9 1.7E-26 3.7E-31 211.0 10.8 184 8-200 159-385 (545)
26 KOG0347|consensus 99.9 1.7E-27 3.7E-32 210.8 4.0 178 13-200 226-471 (731)
27 KOG0334|consensus 99.9 1.9E-26 4.1E-31 215.8 9.5 182 15-200 411-621 (997)
28 PRK04837 ATP-dependent RNA hel 99.9 3.4E-26 7.4E-31 203.0 9.9 176 16-200 55-263 (423)
29 PRK10590 ATP-dependent RNA hel 99.9 1.4E-25 2.9E-30 201.1 11.8 177 15-200 47-253 (456)
30 PRK04537 ATP-dependent RNA hel 99.9 1.3E-25 2.8E-30 206.2 11.6 189 8-200 38-265 (572)
31 PLN00206 DEAD-box ATP-dependen 99.9 5.2E-25 1.1E-29 200.2 12.4 177 14-200 166-375 (518)
32 PRK11192 ATP-dependent RNA hel 99.9 7.3E-24 1.6E-28 188.5 12.5 177 15-200 47-253 (434)
33 PRK01297 ATP-dependent RNA hel 99.9 1.3E-23 2.7E-28 189.2 12.2 177 15-200 133-343 (475)
34 KOG0350|consensus 99.9 2.5E-24 5.4E-29 189.0 6.1 182 13-200 190-437 (620)
35 PTZ00424 helicase 45; Provisio 99.9 8.9E-22 1.9E-26 172.9 12.0 178 14-200 73-275 (401)
36 TIGR02621 cas3_GSU0051 CRISPR- 99.8 2E-20 4.4E-25 175.9 12.0 177 13-200 38-280 (844)
37 PRK09401 reverse gyrase; Revie 99.8 9.9E-20 2.1E-24 177.8 12.2 181 8-200 87-336 (1176)
38 KOG0344|consensus 99.8 2.4E-19 5.2E-24 160.2 4.8 178 13-199 180-394 (593)
39 PRK14701 reverse gyrase; Provi 99.7 2.4E-17 5.1E-22 164.7 14.8 183 8-200 86-338 (1638)
40 TIGR01054 rgy reverse gyrase. 99.7 1.1E-17 2.4E-22 163.6 10.2 182 8-200 85-334 (1171)
41 TIGR03817 DECH_helic helicase/ 99.7 1.2E-17 2.6E-22 157.5 9.7 173 16-200 61-279 (742)
42 PHA02653 RNA helicase NPH-II; 99.6 5.6E-15 1.2E-19 137.7 14.8 156 32-200 218-403 (675)
43 KOG0349|consensus 99.6 5.9E-16 1.3E-20 135.1 6.6 135 32-174 282-448 (725)
44 PRK11664 ATP-dependent RNA hel 99.6 6.2E-14 1.3E-18 133.4 16.9 168 15-200 29-220 (812)
45 TIGR01970 DEAH_box_HrpB ATP-de 99.6 8.8E-14 1.9E-18 132.3 16.9 150 35-200 44-217 (819)
46 cd00268 DEADc DEAD-box helicas 99.6 4.3E-15 9.2E-20 118.8 6.4 136 13-156 43-202 (203)
47 TIGR01587 cas3_core CRISPR-ass 99.5 2.3E-14 4.9E-19 124.4 6.3 176 15-200 8-230 (358)
48 PRK10689 transcription-repair 99.5 4.8E-13 1E-17 131.0 13.5 148 35-200 648-817 (1147)
49 PRK09751 putative ATP-dependen 99.5 1.5E-13 3.3E-18 136.2 9.7 134 15-156 5-187 (1490)
50 TIGR00614 recQ_fam ATP-depende 99.5 4.5E-13 9.7E-18 120.8 11.2 178 8-200 18-234 (470)
51 PRK02362 ski2-like helicase; P 99.4 2.5E-13 5.4E-18 128.5 7.0 117 15-140 48-183 (737)
52 TIGR00580 mfd transcription-re 99.4 1.2E-12 2.6E-17 126.0 11.4 166 16-200 482-668 (926)
53 PRK00254 ski2-like helicase; P 99.4 5.2E-13 1.1E-17 126.1 8.2 125 15-152 48-191 (720)
54 PLN03137 ATP-dependent DNA hel 99.4 1E-12 2.2E-17 126.8 10.1 182 8-200 467-688 (1195)
55 PRK10917 ATP-dependent DNA hel 99.4 2.3E-12 5E-17 121.0 10.1 172 15-200 291-479 (681)
56 PRK11057 ATP-dependent DNA hel 99.4 2.6E-12 5.7E-17 119.2 9.4 170 16-200 50-244 (607)
57 PRK13767 ATP-dependent helicas 99.3 3.2E-12 6.9E-17 123.0 6.8 120 15-140 56-219 (876)
58 PRK01172 ski2-like helicase; P 99.3 4.1E-12 8.8E-17 119.2 6.2 108 36-151 65-190 (674)
59 TIGR01389 recQ ATP-dependent D 99.3 5.3E-11 1.1E-15 110.2 12.2 152 38-200 55-232 (591)
60 PF00270 DEAD: DEAD/DEAH box h 99.2 5.7E-12 1.2E-16 97.3 3.8 124 12-145 20-169 (169)
61 TIGR00643 recG ATP-dependent D 99.2 3.3E-11 7.1E-16 112.4 8.4 168 15-200 265-456 (630)
62 PRK11131 ATP-dependent RNA hel 99.2 6.4E-10 1.4E-14 109.3 14.5 180 5-200 77-294 (1294)
63 PRK12898 secA preprotein trans 99.0 7.7E-10 1.7E-14 102.8 6.8 67 133-200 413-481 (656)
64 PHA02558 uvsW UvsW helicase; P 99.0 1.1E-08 2.3E-13 93.2 14.1 96 35-141 157-262 (501)
65 PRK12899 secA preprotein trans 98.9 3.3E-10 7.2E-15 107.7 2.5 74 12-89 113-194 (970)
66 PRK05580 primosome assembly pr 98.8 9.8E-09 2.1E-13 96.6 7.8 123 15-146 171-312 (679)
67 TIGR03158 cas3_cyano CRISPR-as 98.8 3.1E-08 6.6E-13 86.6 10.1 174 15-200 23-280 (357)
68 COG1204 Superfamily II helicas 98.6 1.8E-07 4E-12 88.9 9.6 155 36-200 76-261 (766)
69 PRK13104 secA preprotein trans 98.6 2.4E-08 5.2E-13 95.1 3.1 76 10-89 99-182 (896)
70 smart00487 DEXDc DEAD-like hel 98.6 2E-07 4.3E-12 72.3 7.2 138 14-159 32-191 (201)
71 TIGR01967 DEAH_box_HrpA ATP-de 98.6 2.3E-06 5E-11 84.9 15.8 181 5-200 70-287 (1283)
72 PRK09200 preprotein translocas 98.6 2.5E-08 5.5E-13 94.5 2.0 78 10-90 95-180 (790)
73 TIGR00963 secA preprotein tran 98.5 3.5E-08 7.6E-13 92.6 0.3 76 10-89 73-156 (745)
74 TIGR00595 priA primosomal prot 98.3 1.9E-06 4.1E-11 78.7 8.5 122 15-145 6-146 (505)
75 TIGR03714 secA2 accessory Sec 98.3 1.9E-07 4.1E-12 88.2 1.7 77 10-90 87-176 (762)
76 PRK13766 Hef nuclease; Provisi 98.1 7.2E-06 1.6E-10 78.3 8.0 125 15-149 38-186 (773)
77 PRK12904 preprotein translocas 98.1 1.5E-06 3.3E-11 82.8 2.0 76 10-89 98-181 (830)
78 PRK13107 preprotein translocas 97.9 5.6E-06 1.2E-10 79.2 2.1 77 10-90 99-183 (908)
79 cd00046 DEXDc DEAD-like helica 97.9 1.5E-05 3.2E-10 58.1 3.6 116 14-138 8-144 (144)
80 COG1205 Distinct helicase fami 97.9 0.00011 2.3E-09 71.1 10.3 180 12-200 91-314 (851)
81 PF06862 DUF1253: Protein of u 97.7 0.0013 2.9E-08 59.0 14.1 71 130-200 216-308 (442)
82 COG1201 Lhr Lhr-like helicases 97.7 0.0003 6.4E-09 67.3 9.7 173 16-200 47-261 (814)
83 COG1202 Superfamily II helicas 97.5 0.0018 3.9E-08 59.6 12.0 153 36-200 261-448 (830)
84 KOG0952|consensus 97.5 0.0033 7.2E-08 61.1 14.0 157 30-200 158-357 (1230)
85 PRK09694 helicase Cas3; Provis 97.4 0.00059 1.3E-08 66.1 7.8 123 13-145 308-487 (878)
86 TIGR00603 rad25 DNA repair hel 97.0 0.018 3.9E-07 54.9 13.3 89 37-139 299-412 (732)
87 PRK07246 bifunctional ATP-depe 96.8 0.00032 7E-09 67.7 0.5 62 7-71 265-332 (820)
88 COG0514 RecQ Superfamily II DN 96.4 0.0082 1.8E-07 55.7 6.3 153 39-200 60-238 (590)
89 COG1061 SSL2 DNA or RNA helica 96.3 0.006 1.3E-07 55.0 5.0 85 39-139 83-184 (442)
90 TIGR03117 cas_csf4 CRISPR-asso 96.2 0.0013 2.9E-08 61.6 0.5 63 9-71 19-89 (636)
91 KOG0951|consensus 95.6 0.11 2.4E-06 51.9 10.2 158 35-200 363-554 (1674)
92 TIGR00348 hsdR type I site-spe 95.4 0.011 2.3E-07 56.0 2.8 43 15-57 272-314 (667)
93 COG1111 MPH1 ERCC4-like helica 95.3 0.17 3.8E-06 46.0 9.8 132 35-176 58-217 (542)
94 COG4581 Superfamily II RNA hel 95.1 0.14 3E-06 50.5 9.3 113 35-162 161-296 (1041)
95 KOG2340|consensus 94.7 0.015 3.3E-07 53.1 1.5 51 7-57 253-314 (698)
96 TIGR01407 dinG_rel DnaQ family 94.2 0.015 3.2E-07 56.6 0.4 63 7-71 265-335 (850)
97 PF07652 Flavi_DEAD: Flaviviru 93.7 0.095 2.1E-06 40.3 3.9 23 35-57 32-54 (148)
98 COG1203 CRISPR-associated heli 93.0 0.29 6.2E-06 47.0 6.8 136 14-157 222-399 (733)
99 COG4098 comFA Superfamily II D 92.9 2.6 5.5E-05 37.2 11.7 152 34-200 142-313 (441)
100 PRK14873 primosome assembly pr 92.5 0.42 9.2E-06 45.4 7.1 129 11-147 165-312 (665)
101 KOG0354|consensus 91.3 0.73 1.6E-05 44.1 7.1 108 35-150 105-233 (746)
102 COG1198 PriA Primosomal protei 91.2 1.7 3.6E-05 41.8 9.5 175 12-200 223-428 (730)
103 KOG0947|consensus 86.7 4.6 0.0001 40.0 9.0 125 8-142 304-448 (1248)
104 COG1110 Reverse gyrase [DNA re 86.4 2.4 5.2E-05 42.1 6.9 24 34-57 123-146 (1187)
105 CHL00122 secA preprotein trans 85.5 0.59 1.3E-05 45.5 2.5 60 10-71 93-157 (870)
106 COG1643 HrpA HrpA-like helicas 84.7 16 0.00035 35.8 11.8 182 4-200 52-267 (845)
107 KOG0351|consensus 83.7 21 0.00045 35.6 12.1 180 7-200 270-493 (941)
108 KOG0948|consensus 83.2 4.4 9.5E-05 39.2 7.0 110 36-158 172-298 (1041)
109 PF00176 SNF2_N: SNF2 family N 83.2 5.3 0.00011 33.0 7.0 88 38-138 60-172 (299)
110 PRK12326 preprotein translocas 81.8 0.83 1.8E-05 43.7 1.8 55 14-70 99-158 (764)
111 COG1197 Mfd Transcription-repa 74.4 21 0.00046 36.1 9.0 110 34-158 641-772 (1139)
112 PRK12902 secA preprotein trans 73.7 2.2 4.8E-05 41.8 2.1 76 12-90 104-186 (939)
113 PRK12906 secA preprotein trans 73.4 1.5 3.4E-05 42.4 1.0 59 10-70 97-160 (796)
114 PF04851 ResIII: Type III rest 71.9 1 2.2E-05 34.3 -0.5 40 13-57 32-71 (184)
115 PRK13103 secA preprotein trans 71.5 2.5 5.3E-05 41.5 1.9 76 11-89 100-182 (913)
116 PF14617 CMS1: U3-containing 9 69.3 1.5 3.2E-05 36.8 -0.1 26 32-57 122-147 (252)
117 PRK04914 ATP-dependent helicas 65.1 14 0.00029 36.9 5.5 23 178-200 479-501 (956)
118 PRK08074 bifunctional ATP-depe 63.7 2.5 5.4E-05 41.8 0.2 63 7-70 277-347 (928)
119 PRK09200 preprotein translocas 62.0 17 0.00037 35.4 5.5 66 133-200 368-436 (790)
120 PRK11448 hsdR type I restricti 58.8 2.8 6.1E-05 42.3 -0.3 24 34-57 461-484 (1123)
121 PRK12904 preprotein translocas 56.2 24 0.00052 34.6 5.4 30 171-200 407-438 (830)
122 TIGR03714 secA2 accessory Sec 55.1 26 0.00056 34.1 5.4 30 171-200 401-432 (762)
123 PRK12906 secA preprotein trans 47.3 34 0.00073 33.5 4.8 65 134-200 381-448 (796)
124 COG1200 RecG RecG-like helicas 46.9 2.8E+02 0.006 26.8 13.0 52 17-70 294-350 (677)
125 KOG0854|consensus 41.4 30 0.00064 27.7 2.9 17 36-52 98-114 (224)
126 KOG0353|consensus 39.6 1E+02 0.0023 27.8 6.3 95 102-199 222-324 (695)
127 PRK12900 secA preprotein trans 38.0 57 0.0012 32.8 4.9 31 170-200 574-606 (1025)
128 KOG0352|consensus 37.1 57 0.0012 29.9 4.3 61 91-156 142-206 (641)
129 PRK04914 ATP-dependent helicas 36.8 36 0.00077 34.1 3.3 29 37-66 200-230 (956)
130 TIGR00963 secA preprotein tran 33.7 78 0.0017 30.8 5.0 65 134-200 346-413 (745)
131 PF13245 AAA_19: Part of AAA d 31.6 61 0.0013 21.6 2.9 21 36-56 42-62 (76)
132 PF02399 Herpes_ori_bp: Origin 30.8 3.6E+02 0.0078 26.7 8.8 121 34-159 76-212 (824)
133 KOG0920|consensus 30.7 3.3E+02 0.0073 27.3 8.8 111 35-159 218-347 (924)
134 COG0610 Type I site-specific r 30.4 19 0.00041 36.0 0.3 43 15-57 282-324 (962)
135 KOG0964|consensus 30.1 46 0.00099 33.3 2.8 53 95-151 1116-1171(1200)
136 KOG0922|consensus 28.3 5.5E+02 0.012 24.8 11.9 74 120-199 187-265 (674)
137 KOG0925|consensus 28.3 4.6E+02 0.0099 24.7 8.6 73 120-199 183-260 (699)
138 KOG1556|consensus 27.9 1.5E+02 0.0032 25.0 5.1 55 102-159 62-126 (309)
139 smart00489 DEXDc3 DEAD-like he 27.9 9.2 0.0002 32.4 -2.0 50 8-57 29-82 (289)
140 smart00488 DEXDc2 DEAD-like he 27.9 9.2 0.0002 32.4 -2.0 50 8-57 29-82 (289)
141 PRK04537 ATP-dependent RNA hel 26.5 1.2E+02 0.0026 28.4 4.8 37 35-71 256-293 (572)
142 TIGR02562 cas3_yersinia CRISPR 26.3 74 0.0016 32.3 3.6 39 31-69 456-499 (1110)
143 PRK11192 ATP-dependent RNA hel 25.9 1.1E+02 0.0025 27.0 4.5 37 35-71 244-281 (434)
144 PRK04837 ATP-dependent RNA hel 25.2 1.2E+02 0.0026 26.8 4.5 36 36-71 255-291 (423)
145 cd00079 HELICc Helicase superf 23.1 2E+02 0.0043 19.9 4.7 35 36-70 28-63 (131)
146 COG4889 Predicted helicase [Ge 22.4 76 0.0017 31.9 2.7 43 29-71 199-245 (1518)
147 PF09848 DUF2075: Uncharacteri 22.0 48 0.001 28.7 1.3 25 33-57 28-52 (352)
148 PRK13104 secA preprotein trans 21.6 1.6E+02 0.0035 29.4 4.8 32 169-200 419-452 (896)
No 1
>KOG0326|consensus
Probab=100.00 E-value=2e-41 Score=283.37 Aligned_cols=181 Identities=42% Similarity=0.607 Sum_probs=168.8
Q ss_pred hhHHhHhhhcCc----------cEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcc
Q psy13288 7 EHSILLILKKSD----------FTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTS 70 (200)
Q Consensus 7 ~~~i~~~l~~~~----------~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~ 70 (200)
++|||-+|.++| +|.+|.+|. +++++..+.+|++|+|||||||+|++++++ .+++++...||++
T Consensus 113 eesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~ 192 (459)
T KOG0326|consen 113 EESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTS 192 (459)
T ss_pred ccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcc
Confidence 468888887765 677899998 789999999999999999999999999998 7899999999999
Q ss_pred ccccCCCCceeee--------cccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCc
Q psy13288 71 KFRSFGKGDIFNA--------GSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKT 130 (200)
Q Consensus 71 ~~~~~~~~~~~~~--------~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~ 130 (200)
. +.++.|+ |||||++ +.++|+ ||||+||+.+|++.+ +.++..+|+++
T Consensus 193 l-----rDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~-----DEADKlLs~~F~~~~---e~li~~lP~~r 259 (459)
T KOG0326|consen 193 L-----RDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVM-----DEADKLLSVDFQPIV---EKLISFLPKER 259 (459)
T ss_pred c-----ccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEe-----chhhhhhchhhhhHH---HHHHHhCCccc
Confidence 9 8888776 9999998 456666 677999999999998 99999999999
Q ss_pred EE-EEEeeCchhHHHHHHHhCCCCeEEEeccccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 131 KV-SAIATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 131 Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
|+ |||||||-.|+.+.+++|++|+.|.+.++.++.+++|||-+|++.+|+.+|..|+.++..+|+|||||
T Consensus 260 QillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCN 330 (459)
T KOG0326|consen 260 QILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCN 330 (459)
T ss_pred eeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEec
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG0328|consensus
Probab=100.00 E-value=9.6e-39 Score=263.60 Aligned_cols=180 Identities=25% Similarity=0.344 Sum_probs=159.7
Q ss_pred hHHhHhhhcCcc----------EEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccc
Q psy13288 8 HSILLILKKSDF----------TLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSK 71 (200)
Q Consensus 8 ~~i~~~l~~~~~----------~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~ 71 (200)
.+||.+|+++|. |..|++.. +.++......||+|++||||||.||.+++. .++++..++||.+.
T Consensus 56 rAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~ 135 (400)
T KOG0328|consen 56 RAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNL 135 (400)
T ss_pred hhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCcc
Confidence 467888888765 45567766 345667778999999999999999999998 89999999999997
Q ss_pred cccCCCCceee--------ecccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcE
Q psy13288 72 FRSFGKGDIFN--------AGSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTK 131 (200)
Q Consensus 72 ~~~~~~~~~~~--------~~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q 131 (200)
.+++.+ .|||||+. ++++|+ ||||.||+.||.+++ ..|++++|+..|
T Consensus 136 -----gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVL-----DEaDemL~kgfk~Qi---ydiyr~lp~~~Q 202 (400)
T KOG0328|consen 136 -----GEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVL-----DEADEMLNKGFKEQI---YDIYRYLPPGAQ 202 (400)
T ss_pred -----chhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEe-----ccHHHHHHhhHHHHH---HHHHHhCCCCce
Confidence 444443 39999998 577777 667999999999998 999999999999
Q ss_pred E-EEEeeCchhHHHHHHHhCCCCeEEEec-cccccccceEEEEEccc-ccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 132 V-SAIATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQE-RQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 132 ~-lfSAT~~~~v~~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~-~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
+ ++|||+|+++.++.++|+.||+.|.++ ++.+.++|+|||+.++. +||++.|+.|+..+...|++||||
T Consensus 203 vv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcn 274 (400)
T KOG0328|consen 203 VVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCN 274 (400)
T ss_pred EEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEec
Confidence 9 999999999999999999999999998 99999999999999985 569999999999999999999998
No 3
>KOG0330|consensus
Probab=100.00 E-value=1.2e-39 Score=277.97 Aligned_cols=184 Identities=18% Similarity=0.193 Sum_probs=162.9
Q ss_pred hHHhHhhhcCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc---c-CCC
Q psy13288 8 HSILLILKKSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR---S-FGK 77 (200)
Q Consensus 8 ~~i~~~l~~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~---~-~~~ 77 (200)
+.|-++-.||++|++|++|. +++-.++..++|+||+||||||.||.++++ .+++++++.||.++.. + +.+
T Consensus 100 dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kk 179 (476)
T KOG0330|consen 100 DVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKK 179 (476)
T ss_pred cEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcC
Confidence 44555667788999999999 555566778999999999999999999999 7999999999998632 2 334
Q ss_pred Cceeeecccccee-------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHH
Q psy13288 78 GDIFNAGSVSRIT-------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVK 143 (200)
Q Consensus 78 ~~~~~~~TPgrl~-------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~ 143 (200)
.+++ +||||||+ .+++|+ ||||++||++|.+.+ +.|++.+|..+|+ |||||||+++.
T Consensus 180 Phil-VaTPGrL~dhl~~Tkgf~le~lk~LVl-----DEADrlLd~dF~~~l---d~ILk~ip~erqt~LfsATMt~kv~ 250 (476)
T KOG0330|consen 180 PHIL-VATPGRLWDHLENTKGFSLEQLKFLVL-----DEADRLLDMDFEEEL---DYILKVIPRERQTFLFSATMTKKVR 250 (476)
T ss_pred CCEE-EeCcHHHHHHHHhccCccHHHhHHHhh-----chHHhhhhhhhHHHH---HHHHHhcCccceEEEEEeecchhhH
Confidence 5554 89999998 345555 778999999999999 9999999999999 99999999999
Q ss_pred HHHHHhCCCCeEEEec-cccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 144 NFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 144 ~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
++...-+++|..+.+. .+.+.++++|+|++++..+|..+|..+++....+.+|||||
T Consensus 251 kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~ 308 (476)
T KOG0330|consen 251 KLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCN 308 (476)
T ss_pred HHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEe
Confidence 9999999999999987 89999999999999999999999999999988899999997
No 4
>KOG0331|consensus
Probab=100.00 E-value=1e-36 Score=271.62 Aligned_cols=180 Identities=19% Similarity=0.232 Sum_probs=151.5
Q ss_pred hhhcCccEEEecCcc-ccccc------CCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccccC---CC
Q psy13288 13 ILKKSDFTLKISCPR-SQLTV------QELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRSF---GK 77 (200)
Q Consensus 13 ~l~~~~~~l~~~~p~-~~~~~------~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~~---~~ 77 (200)
+-+|+++||+|.+|. .++.. ..++|++|||+||||||.||.+++. .++++.+++||.+...+. .+
T Consensus 135 A~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~ 214 (519)
T KOG0331|consen 135 ARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER 214 (519)
T ss_pred eccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc
Confidence 446799999999999 44433 3569999999999999999999998 567799999999873322 12
Q ss_pred Cceeeecccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhC-CCCcEE-EEEeeCchhHH
Q psy13288 78 GDIFNAGSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSL-EPKTKV-SAIATFPLTVK 143 (200)
Q Consensus 78 ~~~~~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l-~~~~Q~-lfSAT~~~~v~ 143 (200)
.--+.+|||||+. +.++|+ ||||+|||+||++++ .+|++++ ++.+|+ |||||||++++
T Consensus 215 gvdiviaTPGRl~d~le~g~~~l~~v~ylVL-----DEADrMldmGFe~qI---~~Il~~i~~~~rQtlm~saTwp~~v~ 286 (519)
T KOG0331|consen 215 GVDVVIATPGRLIDLLEEGSLNLSRVTYLVL-----DEADRMLDMGFEPQI---RKILSQIPRPDRQTLMFSATWPKEVR 286 (519)
T ss_pred CCcEEEeCChHHHHHHHcCCccccceeEEEe-----ccHHhhhccccHHHH---HHHHHhcCCCcccEEEEeeeccHHHH
Confidence 1113369999998 566666 677999999999999 9999999 566799 99999999999
Q ss_pred HHHHHhCCCCeEEEec---cccccccceEEEEEcccccHHHHHHHHHhhC---CCCeEEEEeC
Q psy13288 144 NFMEKHLKDPYEINLM---EELTLKGVTQYYAFVQERQKVHCLNTLFSKC---CSLLGVFTCT 200 (200)
Q Consensus 144 ~~~~~~l~~~~~i~v~---~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~---~~~k~iIF~n 200 (200)
.++..|+++|+.+.+. +....++|.|....|++..|...|..+|+.. ..+|+||||+
T Consensus 287 ~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~ 349 (519)
T KOG0331|consen 287 QLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCE 349 (519)
T ss_pred HHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEec
Confidence 9999999999999886 4477888999999999999999999999866 4679999996
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-36 Score=270.79 Aligned_cols=184 Identities=24% Similarity=0.305 Sum_probs=154.7
Q ss_pred hHHhHhhh----------cCccEEEecCcc-cccc--cCCCCeeEEEEcCCHHHHHHHHHHhh-----c-CCcEEEEeCC
Q psy13288 8 HSILLILK----------KSDFTLKISCPR-SQLT--VQELSLRLVMCVIFREVLLKISSWEK-----V-NLPLYVESQG 68 (200)
Q Consensus 8 ~~i~~~l~----------~~~~~l~~~~p~-~~~~--~~~~~~~~lIl~PTRELa~Qi~~~~~-----~-~l~~~~~~gg 68 (200)
.+||.+|. |+++|++|.+|. +++. ......+|||++||||||.||+++++ . +++++.++||
T Consensus 58 ~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG 137 (513)
T COG0513 58 AAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGG 137 (513)
T ss_pred HHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECC
Confidence 56777776 456777889998 4555 33333339999999999999999999 4 7899999999
Q ss_pred cccccc---CC-CCceeeecccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE
Q psy13288 69 TSKFRS---FG-KGDIFNAGSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV 132 (200)
Q Consensus 69 ~~~~~~---~~-~~~~~~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~ 132 (200)
.+...+ +. ..+++ +|||||++ +.++|+ ||||+|||+||.+++ ..|++.+|.++|+
T Consensus 138 ~~~~~q~~~l~~~~~iv-VaTPGRllD~i~~~~l~l~~v~~lVl-----DEADrmLd~Gf~~~i---~~I~~~~p~~~qt 208 (513)
T COG0513 138 VSIRKQIEALKRGVDIV-VATPGRLLDLIKRGKLDLSGVETLVL-----DEADRMLDMGFIDDI---EKILKALPPDRQT 208 (513)
T ss_pred CCHHHHHHHHhcCCCEE-EECccHHHHHHHcCCcchhhcCEEEe-----ccHhhhhcCCCHHHH---HHHHHhCCcccEE
Confidence 886332 22 24554 79999998 344555 778999999999999 9999999999999
Q ss_pred -EEEeeCchhHHHHHHHhCCCCeEEEec-ccc--ccccceEEEEEccccc-HHHHHHHHHhhCCCCeEEEEeC
Q psy13288 133 -SAIATFPLTVKNFMEKHLKDPYEINLM-EEL--TLKGVTQYYAFVQERQ-KVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 133 -lfSAT~~~~v~~~~~~~l~~~~~i~v~-~~~--~~~~i~q~~i~~~~~~-K~~~L~~ll~~~~~~k~iIF~n 200 (200)
+||||+|+.++++++.+++||..+.+. ... +..+|+|+|+.|++.+ |...|..+++.....++|||||
T Consensus 209 llfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~ 281 (513)
T COG0513 209 LLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVR 281 (513)
T ss_pred EEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 999999999999999999999999887 444 8899999999999876 9999999999988889999997
No 6
>KOG0343|consensus
Probab=100.00 E-value=3e-35 Score=259.93 Aligned_cols=185 Identities=18% Similarity=0.175 Sum_probs=155.7
Q ss_pred hHHhHhhhc----------CccEEEecCccc------ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEe
Q psy13288 8 HSILLILKK----------SDFTLKISCPRS------QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVES 66 (200)
Q Consensus 8 ~~i~~~l~~----------~~~~l~~~~p~~------~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~ 66 (200)
.+||.+|+| |++|||+..|.. ++.+ ..++-||||.||||||.||+++++ ..++..+++
T Consensus 98 ~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~-~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLii 176 (758)
T KOG0343|consen 98 DTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP-TDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLII 176 (758)
T ss_pred hhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC-CCCceeEEecchHHHHHHHHHHHHHHhhccccccceee
Confidence 356666653 678999999984 3333 469999999999999999999998 789999999
Q ss_pred CCccccc---cCCCCceeeeccccceeeeeeeecCCCC-----------ChhhccccccchhhhhcHHHHHhhCCCCcEE
Q psy13288 67 QGTSKFR---SFGKGDIFNAGSVSRITRHTFAMTPSVG-----------PIVDRKFGQIFNGQILVPKHVLRSLEPKTKV 132 (200)
Q Consensus 67 gg~~~~~---~~~~~~~~~~~TPgrl~~~~~v~d~~~~-----------DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~ 132 (200)
||.+..- ...+-.|+ +||||||++|+ |+++. ||||||+|+||...+ +.|++++|+.+|+
T Consensus 177 GG~~~k~E~eRi~~mNIL-VCTPGRLLQHm---de~~~f~t~~lQmLvLDEADR~LDMGFk~tL---~~Ii~~lP~~RQT 249 (758)
T KOG0343|consen 177 GGKDVKFELERISQMNIL-VCTPGRLLQHM---DENPNFSTSNLQMLVLDEADRMLDMGFKKTL---NAIIENLPKKRQT 249 (758)
T ss_pred cCchhHHHHHhhhcCCeE-EechHHHHHHh---hhcCCCCCCcceEEEeccHHHHHHHhHHHHH---HHHHHhCChhhee
Confidence 9988611 01111222 59999999653 33322 889999999999998 9999999999999
Q ss_pred -EEEeeCchhHHHHHHHhCCCCeEEEec---cccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 133 -SAIATFPLTVKNFMEKHLKDPYEINLM---EELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 133 -lfSAT~~~~v~~~~~~~l~~~~~i~v~---~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
|||||=+.+|+++++.-++||.+|.+- ...++.++.|+|+.|+-++|+++|..+++.+...++|||++
T Consensus 250 LLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~S 321 (758)
T KOG0343|consen 250 LLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLS 321 (758)
T ss_pred eeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEe
Confidence 999999999999999999999999874 57889999999999999999999999999998899999974
No 7
>KOG0345|consensus
Probab=100.00 E-value=1e-33 Score=246.40 Aligned_cols=188 Identities=19% Similarity=0.186 Sum_probs=153.2
Q ss_pred hHHhHhhh----------cCccEEEecCcccc-c-----ccCCCCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEE
Q psy13288 8 HSILLILK----------KSDFTLKISCPRSQ-L-----TVQELSLRLVMCVIFREVLLKISSWEK------VNLPLYVE 65 (200)
Q Consensus 8 ~~i~~~l~----------~~~~~l~~~~p~~~-~-----~~~~~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~ 65 (200)
.+||+.|+ ||++|+|+..|... + +.....+-||||+||||||.||.+++. .++++.++
T Consensus 35 ~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~ 114 (567)
T KOG0345|consen 35 ATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELL 114 (567)
T ss_pred hhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEE
Confidence 57787775 67788999999842 2 112234789999999999999999998 78999999
Q ss_pred eCCcccccc---C--CCCceeeeccccceee---------eeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcE
Q psy13288 66 SQGTSKFRS---F--GKGDIFNAGSVSRITR---------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTK 131 (200)
Q Consensus 66 ~gg~~~~~~---~--~~~~~~~~~TPgrl~~---------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q 131 (200)
+||.+.... | +..++. +||||||.. .+--+.-.+.||||+++|+||+.++ +.|++.+|+.|.
T Consensus 115 vGG~~v~~Di~~fkee~~nIl-VgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~---n~ILs~LPKQRR 190 (567)
T KOG0345|consen 115 VGGRSVEEDIKTFKEEGPNIL-VGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASV---NTILSFLPKQRR 190 (567)
T ss_pred ecCccHHHHHHHHHHhCCcEE-EeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHH---HHHHHhcccccc
Confidence 999876211 1 122333 699999981 1001112233788999999999998 999999999999
Q ss_pred E-EEEeeCchhHHHHHHHhCCCCeEEEec-cc--cccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEe
Q psy13288 132 V-SAIATFPLTVKNFMEKHLKDPYEINLM-EE--LTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTC 199 (200)
Q Consensus 132 ~-lfSAT~~~~v~~~~~~~l~~~~~i~v~-~~--~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~ 199 (200)
| |||||.++++.+++...++||+.|.|. +. .++..+..+|+.|+..+|...|..+|......++|||.
T Consensus 191 TGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF 262 (567)
T KOG0345|consen 191 TGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFF 262 (567)
T ss_pred cccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEe
Confidence 9 999999999999999999999999997 33 38889999999999999999999999998889999996
No 8
>KOG0342|consensus
Probab=99.98 E-value=2.4e-32 Score=238.70 Aligned_cols=180 Identities=18% Similarity=0.181 Sum_probs=151.2
Q ss_pred hhhcCccEEEecCccccc-----ccCCCCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEEeCCccccc---cCCCC
Q psy13288 13 ILKKSDFTLKISCPRSQL-----TVQELSLRLVMCVIFREVLLKISSWEK------VNLPLYVESQGTSKFR---SFGKG 78 (200)
Q Consensus 13 ~l~~~~~~l~~~~p~~~~-----~~~~~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~~gg~~~~~---~~~~~ 78 (200)
+=.|+++|+|+++|.-+. ...++++.++|++||||||+|++.+++ .++.+..++||++... .+.+.
T Consensus 126 AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~ 205 (543)
T KOG0342|consen 126 AKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKG 205 (543)
T ss_pred eccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhcc
Confidence 345688999999999421 233589999999999999999999999 3889999999998621 12223
Q ss_pred ceeeeccccceee-------------eeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHH
Q psy13288 79 DIFNAGSVSRITR-------------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKN 144 (200)
Q Consensus 79 ~~~~~~TPgrl~~-------------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~ 144 (200)
--+.+||||||.. +++|+ ||||+++|.||.+++ ..|++.+|+.+|+ +||||.|.+|++
T Consensus 206 ~niliATPGRLlDHlqNt~~f~~r~~k~lvl-----DEADrlLd~GF~~di---~~Ii~~lpk~rqt~LFSAT~~~kV~~ 277 (543)
T KOG0342|consen 206 CNILIATPGRLLDHLQNTSGFLFRNLKCLVL-----DEADRLLDIGFEEDV---EQIIKILPKQRQTLLFSATQPSKVKD 277 (543)
T ss_pred ccEEEeCCchHHhHhhcCCcchhhccceeEe-----ecchhhhhcccHHHH---HHHHHhccccceeeEeeCCCcHHHHH
Confidence 3344799999993 33444 778999999999999 9999999999999 999999999999
Q ss_pred HHHHhCC-CCeEEEec---cccccccceEEEEEcccccHHHHHHHHHhhCCC-CeEEEEeC
Q psy13288 145 FMEKHLK-DPYEINLM---EELTLKGVTQYYAFVQERQKVHCLNTLFSKCCS-LLGVFTCT 200 (200)
Q Consensus 145 ~~~~~l~-~~~~i~v~---~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~-~k~iIF~n 200 (200)
+++..++ ||.+|++. +..+.+++.|-|+.++...++..|+.+|++... .++||||+
T Consensus 278 l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~s 338 (543)
T KOG0342|consen 278 LARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFS 338 (543)
T ss_pred HHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEec
Confidence 9998886 69999874 678888999999999999999999999998866 89999995
No 9
>KOG0346|consensus
Probab=99.97 E-value=1.3e-32 Score=237.97 Aligned_cols=185 Identities=17% Similarity=0.114 Sum_probs=151.0
Q ss_pred hhHHhHhhhc----------CccEEEecCcccc-------cccCCCCeeEEEEcCCHHHHHHHHHHhh-------cCCcE
Q psy13288 7 EHSILLILKK----------SDFTLKISCPRSQ-------LTVQELSLRLVMCVIFREVLLKISSWEK-------VNLPL 62 (200)
Q Consensus 7 ~~~i~~~l~~----------~~~~l~~~~p~~~-------~~~~~~~~~~lIl~PTRELa~Qi~~~~~-------~~l~~ 62 (200)
.++||++|.+ |++|++|++|..| .+..+.++.|+|||||||||+|+++++. ..+++
T Consensus 47 s~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~ 126 (569)
T KOG0346|consen 47 SSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRA 126 (569)
T ss_pred hcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4689999875 6678889999842 3456789999999999999999999998 33443
Q ss_pred EEEeCCcc----ccccCCCCceeeecccccee-------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhh
Q psy13288 63 YVESQGTS----KFRSFGKGDIFNAGSVSRIT-------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRS 125 (200)
Q Consensus 63 ~~~~gg~~----~~~~~~~~~~~~~~TPgrl~-------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~ 125 (200)
.-+....+ ...-.+..+++ +|||||++ ..++|+ ||||.||..||++++ ..+.++
T Consensus 127 ~nl~s~~sdsv~~~~L~d~pdIv-V~TP~~ll~~~~~~~~~~~~~l~~LVv-----DEADLllsfGYeedl---k~l~~~ 197 (569)
T KOG0346|consen 127 INLASSMSDSVNSVALMDLPDIV-VATPAKLLRHLAAGVLEYLDSLSFLVV-----DEADLLLSFGYEEDL---KKLRSH 197 (569)
T ss_pred hhhhcccchHHHHHHHccCCCeE-EeChHHHHHHHhhccchhhhheeeEEe-----chhhhhhhcccHHHH---HHHHHh
Confidence 33332211 11224456665 89999998 345555 778999999999999 999999
Q ss_pred CCCCcEE-EEEeeCchhHHHHHHHhCCCCeEEEec--cccccccceEEEEEcccccHHHHHHHHHh-hCCCCeEEEEeC
Q psy13288 126 LEPKTKV-SAIATFPLTVKNFMEKHLKDPYEINLM--EELTLKGVTQYYAFVQERQKVHCLNTLFS-KCCSLLGVFTCT 200 (200)
Q Consensus 126 l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~--~~~~~~~i~q~~i~~~~~~K~~~L~~ll~-~~~~~k~iIF~n 200 (200)
+|+..|. |.|||++++++.+.+.+++||+.+.+. +-..++.+.||++.|+++||+..|+.+++ .+..+++|||+|
T Consensus 198 LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVN 276 (569)
T KOG0346|consen 198 LPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVN 276 (569)
T ss_pred CCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEe
Confidence 9999999 999999999999999999999999876 44556789999999999999999999998 557799999998
No 10
>KOG0338|consensus
Probab=99.97 E-value=9.4e-32 Score=236.09 Aligned_cols=181 Identities=18% Similarity=0.190 Sum_probs=150.0
Q ss_pred hcCccEEEecCccc-cc---ccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc----CCCCcee
Q psy13288 15 KKSDFTLKISCPRS-QL---TVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS----FGKGDIF 81 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~---~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~----~~~~~~~ 81 (200)
.|+++|.+|.+|.. ++ -......|+|||+||||||.|++++.+ ..+.+++++||-+.--+ .+..+|.
T Consensus 227 TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIV 306 (691)
T KOG0338|consen 227 TGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIV 306 (691)
T ss_pred ccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEE
Confidence 46788999999983 22 123568899999999999999999998 78999999999886211 1244555
Q ss_pred eeccccceeeeeee-----ecC---CCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCC
Q psy13288 82 NAGSVSRITRHTFA-----MTP---SVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKD 152 (200)
Q Consensus 82 ~~~TPgrl~~~~~v-----~d~---~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~ 152 (200)
+|||||+..|+.. +|. .+.|||||||+.||.+++ ++|++.+|++||+ ||||||+++|.+++..-+++
T Consensus 307 -IATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFadem---nEii~lcpk~RQTmLFSATMteeVkdL~slSL~k 382 (691)
T KOG0338|consen 307 -IATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEM---NEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNK 382 (691)
T ss_pred -EecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHH---HHHHHhccccccceeehhhhHHHHHHHHHhhcCC
Confidence 7999999843321 111 233889999999999999 9999999999999 99999999999999999999
Q ss_pred CeEEEec-cccccccceEEEEEccc---ccHHHHHHHHHhhCCCCeEEEEe
Q psy13288 153 PYEINLM-EELTLKGVTQYYAFVQE---RQKVHCLNTLFSKCCSLLGVFTC 199 (200)
Q Consensus 153 ~~~i~v~-~~~~~~~i~q~~i~~~~---~~K~~~L~~ll~~~~~~k~iIF~ 199 (200)
|+.|.++ ...+...+.|.|+.+.+ -++...|..|+...-...+|||+
T Consensus 383 Pvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv 433 (691)
T KOG0338|consen 383 PVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFV 433 (691)
T ss_pred CeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEE
Confidence 9999998 66777889999998874 35888999999887778999997
No 11
>KOG0333|consensus
Probab=99.97 E-value=4e-30 Score=226.41 Aligned_cols=183 Identities=15% Similarity=0.113 Sum_probs=149.5
Q ss_pred hcCccEEEecCccc----------ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc---CC
Q psy13288 15 KKSDFTLKISCPRS----------QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS---FG 76 (200)
Q Consensus 15 ~~~~~~l~~~~p~~----------~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~---~~ 76 (200)
.++++|++|.+|.. .+.....+|+|+|++||||||+||.++.. .++++..++||.+...+ +.
T Consensus 291 TgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls 370 (673)
T KOG0333|consen 291 TGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLS 370 (673)
T ss_pred ccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhh
Confidence 45677777766552 23334579999999999999999999988 78999999999987322 22
Q ss_pred CCceeeecccccee----eeeeeec---CCCCChhhccccccchhhhhcHHHHHhhCCCC--------------------
Q psy13288 77 KGDIFNAGSVSRIT----RHTFAMT---PSVGPIVDRKFGQIFNGQILVPKHVLRSLEPK-------------------- 129 (200)
Q Consensus 77 ~~~~~~~~TPgrl~----~~~~v~d---~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~-------------------- 129 (200)
....+.+||||||. .+++|+. +.+.||||+|+|+||++++ ..|+.++|.+
T Consensus 371 ~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv---~~iL~~mPssn~k~~tde~~~~~~~~~~~~ 447 (673)
T KOG0333|consen 371 MGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDV---QKILEQMPSSNAKPDTDEKEGEERVRKNFS 447 (673)
T ss_pred ccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHH---HHHHHhCCccccCCCccchhhHHHHHhhcc
Confidence 33344479999998 2222221 2233788999999999999 9999988631
Q ss_pred -----cEE-EEEeeCchhHHHHHHHhCCCCeEEEec-cccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 130 -----TKV-SAIATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 130 -----~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
+|+ |||||+|+-+..+++.||.+|.++.++ ...+.+.++|.++.+++.+|...|..+++.....++|||+|
T Consensus 448 ~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN 525 (673)
T KOG0333|consen 448 SSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVN 525 (673)
T ss_pred cccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEe
Confidence 799 999999999999999999999999998 77778899999999999999999999999887789999998
No 12
>KOG0327|consensus
Probab=99.97 E-value=3.9e-31 Score=225.51 Aligned_cols=175 Identities=21% Similarity=0.299 Sum_probs=152.9
Q ss_pred cCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccccC----CCCceeeecc
Q psy13288 16 KSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRSF----GKGDIFNAGS 85 (200)
Q Consensus 16 ~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~~----~~~~~~~~~T 85 (200)
+.++|.+++.+. ++++......||+|++||||||.|+.++.+ .+.++..++||.+..++- .....+.+||
T Consensus 73 gTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGT 152 (397)
T KOG0327|consen 73 GTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGT 152 (397)
T ss_pred cccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCC
Confidence 345666677777 678999999999999999999999998888 788899999999874321 1112334699
Q ss_pred cccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCC
Q psy13288 86 VSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKD 152 (200)
Q Consensus 86 Pgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~ 152 (200)
|||+. ++++++ ||||.|+..||.+++ ..|++++|++.|+ +||||+|.++..+.++|+++
T Consensus 153 pgrV~dml~~~~l~~~~iKmfvl-----DEaDEmLs~gfkdqI---~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~ 224 (397)
T KOG0327|consen 153 PGRVFDMLNRGSLSTDGIKMFVL-----DEADEMLSRGFKDQI---YDIFQELPSDVQVVLLSATMPSDVLEVTKKFMRE 224 (397)
T ss_pred chhHHHhhccccccccceeEEee-----cchHhhhccchHHHH---HHHHHHcCcchhheeecccCcHHHHHHHHHhccC
Confidence 99998 455666 677999999999999 9999999999999 99999999999999999999
Q ss_pred CeEEEec-cccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 153 PYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 153 ~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
|..|.++ ++.+.+.++|+|+.+.+++|+..|+.+++ ...+++||||
T Consensus 225 pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~n 271 (397)
T KOG0327|consen 225 PVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCN 271 (397)
T ss_pred ceEEEecchhhhhhheeeeeeeccccccccHHHHHHH--hhhcceEEec
Confidence 9999998 88999999999999999999999999999 6789999998
No 13
>KOG4284|consensus
Probab=99.97 E-value=2.3e-30 Score=232.36 Aligned_cols=185 Identities=21% Similarity=0.296 Sum_probs=156.4
Q ss_pred hhHHhHhhh----------cCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEEeCCc
Q psy13288 7 EHSILLILK----------KSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK------VNLPLYVESQGT 69 (200)
Q Consensus 7 ~~~i~~~l~----------~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~~gg~ 69 (200)
.++||+++- |-++|+-|+.-. +.++++.+.+|++|++||||+|.||.+++. .+++|.+.+||+
T Consensus 53 aaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT 132 (980)
T KOG4284|consen 53 AAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGT 132 (980)
T ss_pred hhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCc
Confidence 356777766 457788787766 567888999999999999999999999988 789999999999
Q ss_pred cccc---cCCCCceeeecccccee------------eeeeeecCCCCChhhcccc-ccchhhhhcHHHHHhhCCCCcEE-
Q psy13288 70 SKFR---SFGKGDIFNAGSVSRIT------------RHTFAMTPSVGPIVDRKFG-QIFNGQILVPKHVLRSLEPKTKV- 132 (200)
Q Consensus 70 ~~~~---~~~~~~~~~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~-~~f~~~i~~i~~i~~~l~~~~Q~- 132 (200)
.... .+ +...+.+|||||+. +.++|+ ||||+|++ ..|+++| ..|++.+|+++|+
T Consensus 133 ~~~~d~~rl-k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVL-----DEADkL~~t~sfq~~I---n~ii~slP~~rQv~ 203 (980)
T KOG4284|consen 133 AHKLDLIRL-KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVL-----DEADKLMDTESFQDDI---NIIINSLPQIRQVA 203 (980)
T ss_pred hhhhhhhhh-hhceEEecCchHHHHHHHhcCCCccceeEEEe-----ccHHhhhchhhHHHHH---HHHHHhcchhheee
Confidence 8621 12 22223469999998 455555 67899999 6799998 9999999999999
Q ss_pred EEEeeCchhHHHHHHHhCCCCeEEEec-cccccccceEEEEEcccc--------cHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 133 SAIATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQER--------QKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 133 lfSAT~~~~v~~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~--------~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
.||||+|..+-+...+||+||..|+.. ....+-+|+|||..++.. .|+..|..+++.++..|+|||||
T Consensus 204 a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~ 280 (980)
T KOG4284|consen 204 AFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCD 280 (980)
T ss_pred EEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhh
Confidence 999999999999999999999999987 777788999999876642 39999999999999999999996
No 14
>KOG0341|consensus
Probab=99.96 E-value=2.5e-31 Score=227.52 Aligned_cols=184 Identities=17% Similarity=0.123 Sum_probs=149.0
Q ss_pred HhhhcCccEEEecCcccc--------c-ccCCCCeeEEEEcCCHHHHHHHHHHhh-----------cCCcEEEEeCCccc
Q psy13288 12 LILKKSDFTLKISCPRSQ--------L-TVQELSLRLVMCVIFREVLLKISSWEK-----------VNLPLYVESQGTSK 71 (200)
Q Consensus 12 ~~l~~~~~~l~~~~p~~~--------~-~~~~~~~~~lIl~PTRELa~Qi~~~~~-----------~~l~~~~~~gg~~~ 71 (200)
-+..+|++|+.+.+|..- + -....+|.+||++|+||||.|+++++. ..+++.+++||.++
T Consensus 213 IAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v 292 (610)
T KOG0341|consen 213 IAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPV 292 (610)
T ss_pred EEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccH
Confidence 355678889988777631 1 123468999999999999999999987 67899999999987
Q ss_pred ccc---CCCCceeeeccccceee----ee---eeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCch
Q psy13288 72 FRS---FGKGDIFNAGSVSRITR----HT---FAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPL 140 (200)
Q Consensus 72 ~~~---~~~~~~~~~~TPgrl~~----~~---~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~ 140 (200)
..+ ....-.+.+||||||+. +. .+....+.||||||+|+||++++ ..|+.++...||+ +||||+|.
T Consensus 293 ~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddi---r~iF~~FK~QRQTLLFSATMP~ 369 (610)
T KOG0341|consen 293 REQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDI---RTIFSFFKGQRQTLLFSATMPK 369 (610)
T ss_pred HHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhH---HHHHHHHhhhhheeeeeccccH
Confidence 221 12233344699999981 11 22222344888999999999999 9999999999999 99999999
Q ss_pred hHHHHHHHhCCCCeEEEec-cccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEe
Q psy13288 141 TVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTC 199 (200)
Q Consensus 141 ~v~~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~ 199 (200)
.++.+++.-+-.|+.+.|+ .....-++.|...||..+.|+.+|.++|++. ..+++|||
T Consensus 370 KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT-~PpVLIFa 428 (610)
T KOG0341|consen 370 KIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT-SPPVLIFA 428 (610)
T ss_pred HHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccC-CCceEEEe
Confidence 9999999999999999998 6666678899999999999999999999884 56999998
No 15
>KOG0335|consensus
Probab=99.96 E-value=1.3e-29 Score=223.42 Aligned_cols=178 Identities=21% Similarity=0.148 Sum_probs=144.9
Q ss_pred hhcCccEEEecCccc-cccc----------CCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc---c
Q psy13288 14 LKKSDFTLKISCPRS-QLTV----------QELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR---S 74 (200)
Q Consensus 14 l~~~~~~l~~~~p~~-~~~~----------~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~---~ 74 (200)
-.++++|.++++|.. .+-. ....|+++|++||||||.||++..+ ..+++...+||++... .
T Consensus 119 qTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~ 198 (482)
T KOG0335|consen 119 QTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRF 198 (482)
T ss_pred cCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhh
Confidence 356788999999983 2111 1136999999999999999999999 7889999999976521 1
Q ss_pred C-CCCceeeecccccee------------eeeeeecCCCCChhhcccc-ccchhhhhcHHHHHhhCCC----CcEE-EEE
Q psy13288 75 F-GKGDIFNAGSVSRIT------------RHTFAMTPSVGPIVDRKFG-QIFNGQILVPKHVLRSLEP----KTKV-SAI 135 (200)
Q Consensus 75 ~-~~~~~~~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~-~~f~~~i~~i~~i~~~l~~----~~Q~-lfS 135 (200)
. ..-++. ++|||||. ++++|+ ||||+|+| +||.++| ++|+.+... ++|+ |||
T Consensus 199 ~~~gcdIl-vaTpGrL~d~~e~g~i~l~~~k~~vL-----DEADrMlD~mgF~p~I---r~iv~~~~~~~~~~~qt~mFS 269 (482)
T KOG0335|consen 199 IKRGCDIL-VATPGRLKDLIERGKISLDNCKFLVL-----DEADRMLDEMGFEPQI---RKIVEQLGMPPKNNRQTLLFS 269 (482)
T ss_pred hccCccEE-EecCchhhhhhhcceeehhhCcEEEe-----cchHHhhhhccccccH---HHHhcccCCCCccceeEEEEe
Confidence 2 222333 69999998 566666 67799999 9999999 999987743 7899 999
Q ss_pred eeCchhHHHHHHHhCCC-CeEEEec-cccccccceEEEEEcccccHHHHHHHHHhhCC----CC-----eEEEEeC
Q psy13288 136 ATFPLTVKNFMEKHLKD-PYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKCC----SL-----LGVFTCT 200 (200)
Q Consensus 136 AT~~~~v~~~~~~~l~~-~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~----~~-----k~iIF~n 200 (200)
||+|.+++.++..|+.+ .+++.+. ...+..+++|..+.|.+.+|...|.++|.+.. .+ +++|||.
T Consensus 270 Atfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvE 345 (482)
T KOG0335|consen 270 ATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVE 345 (482)
T ss_pred ccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEee
Confidence 99999999999999997 7778777 77888999999999999999999999998543 33 7999984
No 16
>KOG0339|consensus
Probab=99.96 E-value=4.7e-29 Score=219.11 Aligned_cols=177 Identities=19% Similarity=0.158 Sum_probs=143.1
Q ss_pred cCccEEEecCccc-ccc-----cCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc---CCCCcee
Q psy13288 16 KSDFTLKISCPRS-QLT-----VQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS---FGKGDIF 81 (200)
Q Consensus 16 ~~~~~l~~~~p~~-~~~-----~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~---~~~~~~~ 81 (200)
+|++|.+|..|.. ++- ...++|-+||++||||||.||+.+++ .++++.+++||.+.+-+ +.....+
T Consensus 270 gSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~Ei 349 (731)
T KOG0339|consen 270 GSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEI 349 (731)
T ss_pred cCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeE
Confidence 3667777777762 221 12468999999999999999999999 68999999999987433 2233333
Q ss_pred eecccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHH
Q psy13288 82 NAGSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEK 148 (200)
Q Consensus 82 ~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~ 148 (200)
.+||||||. +.++|+ ||||+||++||+.++ +.|..++.+++|+ +|||||+..+..+++.
T Consensus 350 vVaTPgRlid~VkmKatn~~rvS~LV~-----DEadrmfdmGfe~qV---rSI~~hirpdrQtllFsaTf~~kIe~lard 421 (731)
T KOG0339|consen 350 VVATPGRLIDMVKMKATNLSRVSYLVL-----DEADRMFDMGFEPQV---RSIKQHIRPDRQTLLFSATFKKKIEKLARD 421 (731)
T ss_pred EEechHHHHHHHHhhcccceeeeEEEE-----echhhhhccccHHHH---HHHHhhcCCcceEEEeeccchHHHHHHHHH
Confidence 479999998 455666 667999999999999 9999999999999 9999999999999999
Q ss_pred hCCCCeEEEec-cccccccceEEEEEccc-ccHHHHHHHHHh-hCCCCeEEEEeC
Q psy13288 149 HLKDPYEINLM-EELTLKGVTQYYAFVQE-RQKVHCLNTLFS-KCCSLLGVFTCT 200 (200)
Q Consensus 149 ~l~~~~~i~v~-~~~~~~~i~q~~i~~~~-~~K~~~L~~ll~-~~~~~k~iIF~n 200 (200)
++.+|+.+... .......|.|.+..|++ +.|+.+|..-|- ....+++|||+.
T Consensus 422 ~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVT 476 (731)
T KOG0339|consen 422 ILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVT 476 (731)
T ss_pred HhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEe
Confidence 99999998765 55666789999888875 468888775444 446689999983
No 17
>KOG0336|consensus
Probab=99.96 E-value=3.8e-29 Score=215.34 Aligned_cols=181 Identities=18% Similarity=0.199 Sum_probs=146.0
Q ss_pred cCccEEEecCcc-cccc------cCCCCeeEEEEcCCHHHHHHHHHHhh----cCCcEEEEeCCcccccc----CCCCce
Q psy13288 16 KSDFTLKISCPR-SQLT------VQELSLRLVMCVIFREVLLKISSWEK----VNLPLYVESQGTSKFRS----FGKGDI 80 (200)
Q Consensus 16 ~~~~~l~~~~p~-~~~~------~~~~~~~~lIl~PTRELa~Qi~~~~~----~~l~~~~~~gg~~~~~~----~~~~~~ 80 (200)
+.|+||+++.|. .+++ .+.++|..|+++||||||+||.-+++ .+.+..+++||.+..-+ .+..++
T Consensus 267 gtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgvei 346 (629)
T KOG0336|consen 267 GTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEI 346 (629)
T ss_pred CCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceE
Confidence 456778888887 3322 35689999999999999999998887 78899999999876211 123333
Q ss_pred eeecccccee-------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCC
Q psy13288 81 FNAGSVSRIT-------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKD 152 (200)
Q Consensus 81 ~~~~TPgrl~-------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~ 152 (200)
+ ++|||||. +..-.+...|.||||+|||+||+.+| .+|+--+.+++|+ |-|||||+.|++++..|+++
T Consensus 347 i-iatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqI---rkilldiRPDRqtvmTSATWP~~VrrLa~sY~Ke 422 (629)
T KOG0336|consen 347 I-IATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQI---RKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKE 422 (629)
T ss_pred E-eeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHH---HHHhhhcCCcceeeeecccCchHHHHHHHHhhhC
Confidence 3 69999998 12222233344788999999999999 9999999999999 99999999999999999999
Q ss_pred CeEEEec--cccccccceEEEEEcccccHHHHHHHHHhhC-CCCeEEEEeC
Q psy13288 153 PYEINLM--EELTLKGVTQYYAFVQERQKVHCLNTLFSKC-CSLLGVFTCT 200 (200)
Q Consensus 153 ~~~i~v~--~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~-~~~k~iIF~n 200 (200)
|..+.++ +-.....++|.++.-.+++|......+++.. ...++||||.
T Consensus 423 p~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~ 473 (629)
T KOG0336|consen 423 PMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVS 473 (629)
T ss_pred ceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 9999887 6667788999997667889999998988877 5579999994
No 18
>KOG0340|consensus
Probab=99.96 E-value=7.6e-29 Score=209.99 Aligned_cols=186 Identities=18% Similarity=0.161 Sum_probs=157.2
Q ss_pred hhHHhHhhh----------cCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcc
Q psy13288 7 EHSILLILK----------KSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTS 70 (200)
Q Consensus 7 ~~~i~~~l~----------~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~ 70 (200)
.+|||.+|. ||++|.+++.|. +++..++++..|+|++||||||.||.+.|. .++++++++||+.
T Consensus 35 ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d 114 (442)
T KOG0340|consen 35 QACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTD 114 (442)
T ss_pred hhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHH
Confidence 367777775 467899999999 778899999999999999999999999998 8999999999998
Q ss_pred ccc---cCCCCceeeecccccee----------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcE
Q psy13288 71 KFR---SFGKGDIFNAGSVSRIT----------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTK 131 (200)
Q Consensus 71 ~~~---~~~~~~~~~~~TPgrl~----------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q 131 (200)
+.. .+.+.....++||||+. .+++|+ ||||+|++.+|.+++ ..+.+.+|+.||
T Consensus 115 ~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl-----DEADrvL~~~f~d~L---~~i~e~lP~~RQ 186 (442)
T KOG0340|consen 115 MIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL-----DEADRVLAGCFPDIL---EGIEECLPKPRQ 186 (442)
T ss_pred HhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEe-----cchhhhhccchhhHH---hhhhccCCCccc
Confidence 632 23344445579999998 345555 677999999999998 999999999999
Q ss_pred E-EEEeeCchhHHHHHHHhCCC--CeEEEec-cccccccceEEEEEcccccHHHHHHHHHhhC---CCCeEEEEeC
Q psy13288 132 V-SAIATFPLTVKNFMEKHLKD--PYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKC---CSLLGVFTCT 200 (200)
Q Consensus 132 ~-lfSAT~~~~v~~~~~~~l~~--~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~---~~~k~iIF~n 200 (200)
+ +||||+++.++++......+ ++.+.+. +..+++.+.|.|+.|+...|..||+.+|... ..+.++||+|
T Consensus 187 tLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvn 262 (442)
T KOG0340|consen 187 TLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVN 262 (442)
T ss_pred eEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEee
Confidence 9 99999999999988777766 4555543 7788999999999999999999999999866 3568999997
No 19
>KOG0332|consensus
Probab=99.96 E-value=5.8e-29 Score=211.89 Aligned_cols=182 Identities=20% Similarity=0.187 Sum_probs=153.1
Q ss_pred HhHhhhcCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc-CCCCceee
Q psy13288 10 ILLILKKSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS-FGKGDIFN 82 (200)
Q Consensus 10 i~~~l~~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~-~~~~~~~~ 82 (200)
|..+=.|.++|.++.+.. ++++++...|||++|+||||||.|+.+++. .+++......|....|. +-.+|+.
T Consensus 133 IaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIv- 211 (477)
T KOG0332|consen 133 IAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIV- 211 (477)
T ss_pred hhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhhee-
Confidence 444445677777776655 589999999999999999999999999998 56677777766643332 1134444
Q ss_pred ecccccee-------------eeeeeecCCCCChhhcccc-ccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHH
Q psy13288 83 AGSVSRIT-------------RHTFAMTPSVGPIVDRKFG-QIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFME 147 (200)
Q Consensus 83 ~~TPgrl~-------------~~~~v~d~~~~DEAD~ll~-~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~ 147 (200)
+||||-+. .+++|+ ||||.|++ +||+++- ..|++.+|++.|+ +||||+.+.++.++.
T Consensus 212 iGTPGtv~Dlm~klk~id~~kikvfVl-----DEAD~Mi~tqG~~D~S---~rI~~~lP~~~QllLFSATf~e~V~~Fa~ 283 (477)
T KOG0332|consen 212 IGTPGTVLDLMLKLKCIDLEKIKVFVL-----DEADVMIDTQGFQDQS---IRIMRSLPRNQQLLLFSATFVEKVAAFAL 283 (477)
T ss_pred eCCCccHHHHHHHHHhhChhhceEEEe-----cchhhhhhcccccccc---hhhhhhcCCcceEEeeechhHHHHHHHHH
Confidence 79999887 466666 66799998 5899998 8999999999999 999999999999999
Q ss_pred HhCCCCeEEEec-cccccccceEEEEEccc-ccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 148 KHLKDPYEINLM-EELTLKGVTQYYAFVQE-RQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 148 ~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~-~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
++++||..+.++ ++..+++|+|+|+.|+. .+|+++|+.|+..+..+++||||.
T Consensus 284 kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~ 338 (477)
T KOG0332|consen 284 KIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCH 338 (477)
T ss_pred HhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEe
Confidence 999999999988 89999999999999986 479999999999999999999994
No 20
>KOG0329|consensus
Probab=99.95 E-value=3.6e-29 Score=204.72 Aligned_cols=175 Identities=21% Similarity=0.215 Sum_probs=151.0
Q ss_pred CccEEEecCc-ccccccCCCCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEEeCCcccccc---CCCCceeeeccc
Q psy13288 17 SDFTLKISCP-RSQLTVQELSLRLVMCVIFREVLLKISSWEK------VNLPLYVESQGTSKFRS---FGKGDIFNAGSV 86 (200)
Q Consensus 17 ~~~~l~~~~p-~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~~gg~~~~~~---~~~~~~~~~~TP 86 (200)
-++|..+.+. .+|+++......+++++.|||||.||.+++. .++++.+.+||.++-+. +.+...+.+|||
T Consensus 90 mgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTP 169 (387)
T KOG0329|consen 90 MGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTP 169 (387)
T ss_pred CCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCc
Confidence 3556655444 4789999999999999999999999999987 79999999999988221 222334446999
Q ss_pred ccee------------eeeeeecCCCCChhhccccc-cchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCC
Q psy13288 87 SRIT------------RHTFAMTPSVGPIVDRKFGQ-IFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKD 152 (200)
Q Consensus 87 grl~------------~~~~v~d~~~~DEAD~ll~~-~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~ 152 (200)
||++ ++.+|+ ||+|+|+++ ++..++ ++|++..|+..|. +||||++++++.++++||.|
T Consensus 170 GrilALvr~k~l~lk~vkhFvl-----DEcdkmle~lDMrRDv---QEifr~tp~~KQvmmfsatlskeiRpvC~kFmQd 241 (387)
T KOG0329|consen 170 GRILALVRNRSLNLKNVKHFVL-----DECDKMLEQLDMRRDV---QEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQD 241 (387)
T ss_pred HHHHHHHHhccCchhhcceeeh-----hhHHHHHHHHHHHHHH---HHHhhcCcccceeeeeeeecchhhHHHHHhhhcC
Confidence 9998 345555 778999985 788888 9999999999999 99999999999999999999
Q ss_pred CeEEEec--cccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEe
Q psy13288 153 PYEINLM--EELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTC 199 (200)
Q Consensus 153 ~~~i~v~--~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~ 199 (200)
|..|.++ ...+++++.|||+..++++|...|..||..+..+|++||+
T Consensus 242 PmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFv 290 (387)
T KOG0329|consen 242 PMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFV 290 (387)
T ss_pred chhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEee
Confidence 9999887 5788999999999999999999999999999999999997
No 21
>KOG0348|consensus
Probab=99.95 E-value=3.6e-29 Score=220.81 Aligned_cols=192 Identities=20% Similarity=0.123 Sum_probs=142.3
Q ss_pred hHHhHhhhc----------CccEEEecCccc--------ccccCCCCeeEEEEcCCHHHHHHHHHHhh------cCCcEE
Q psy13288 8 HSILLILKK----------SDFTLKISCPRS--------QLTVQELSLRLVMCVIFREVLLKISSWEK------VNLPLY 63 (200)
Q Consensus 8 ~~i~~~l~~----------~~~~l~~~~p~~--------~~~~~~~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~ 63 (200)
.+||.+|.+ +++||+|.+|.- ++. ...++.|||||||||||+|+|++++ ..+-.+
T Consensus 166 q~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~-Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg 244 (708)
T KOG0348|consen 166 QAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ-RSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPG 244 (708)
T ss_pred cchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc-ccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeec
Confidence 578888764 567888999983 233 3469999999999999999999998 455567
Q ss_pred EEeCCcccccc---CCCCceeeeccccceee--------eeeeecCCCCChhhccccccchhhhhcHHHHHhh-------
Q psy13288 64 VESQGTSKFRS---FGKGDIFNAGSVSRITR--------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRS------- 125 (200)
Q Consensus 64 ~~~gg~~~~~~---~~~~~~~~~~TPgrl~~--------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~------- 125 (200)
.+.||+..-.+ +.+.--+.|||||||.. +.--+.+.+.||||+++|.||+++|.+|-+++..
T Consensus 245 ~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~ 324 (708)
T KOG0348|consen 245 VLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECK 324 (708)
T ss_pred eeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcc
Confidence 88899876110 11222223699999982 1122233344788999999999999444444422
Q ss_pred ---CCCCcEE-EEEeeCchhHHHHHHHhCCCCeEEEec------c--------------------ccccccceEEEEEcc
Q psy13288 126 ---LEPKTKV-SAIATFPLTVKNFMEKHLKDPYEINLM------E--------------------ELTLKGVTQYYAFVQ 175 (200)
Q Consensus 126 ---l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~------~--------------------~~~~~~i~q~~i~~~ 175 (200)
+|+.+|. |+|||+++.|.++++.-++||..|.++ . ...++.+.|.|..|+
T Consensus 325 ~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVP 404 (708)
T KOG0348|consen 325 DPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVP 404 (708)
T ss_pred cccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecC
Confidence 3445788 999999999999999999999999842 1 123556889999999
Q ss_pred cccHHHHHHHHHhhC----CCCeEEEEeC
Q psy13288 176 ERQKVHCLNTLFSKC----CSLLGVFTCT 200 (200)
Q Consensus 176 ~~~K~~~L~~ll~~~----~~~k~iIF~n 200 (200)
+.-++.+|..+|.+. ...++|||++
T Consensus 405 pKLRLV~Laa~L~~~~k~~~~qk~iVF~S 433 (708)
T KOG0348|consen 405 PKLRLVALAALLLNKVKFEEKQKMIVFFS 433 (708)
T ss_pred CchhHHHHHHHHHHHhhhhhhceeEEEEe
Confidence 999999999888754 4568999974
No 22
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.95 E-value=1.2e-27 Score=214.42 Aligned_cols=176 Identities=18% Similarity=0.241 Sum_probs=145.8
Q ss_pred cCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEEeCCcccccc---C-CCCceeeec
Q psy13288 16 KSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK------VNLPLYVESQGTSKFRS---F-GKGDIFNAG 84 (200)
Q Consensus 16 ~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~~gg~~~~~~---~-~~~~~~~~~ 84 (200)
|+|+|++|..|. +++......+++||++||||||.|+.+.++ .++++..++||.+...+ + ...+++ +|
T Consensus 51 GsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~Iv-V~ 129 (460)
T PRK11776 51 GSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHII-VG 129 (460)
T ss_pred CCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEE-EE
Confidence 456666677777 445555567899999999999999999888 36889999999876221 1 223443 79
Q ss_pred ccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCC
Q psy13288 85 SVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLK 151 (200)
Q Consensus 85 TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~ 151 (200)
||||+. ..++|+ ||||+|++.||..++ ..+++.+|+.+|+ +||||+++++..+++.+++
T Consensus 130 Tp~rl~~~l~~~~~~l~~l~~lVi-----DEad~~l~~g~~~~l---~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~ 201 (460)
T PRK11776 130 TPGRILDHLRKGTLDLDALNTLVL-----DEADRMLDMGFQDAI---DAIIRQAPARRQTLLFSATYPEGIAAISQRFQR 201 (460)
T ss_pred ChHHHHHHHHcCCccHHHCCEEEE-----ECHHHHhCcCcHHHH---HHHHHhCCcccEEEEEEecCcHHHHHHHHHhcC
Confidence 999997 244455 778999999999998 9999999999999 9999999999999999999
Q ss_pred CCeEEEeccccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 152 DPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 152 ~~~~i~v~~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
+|..+.+........++|+|+.++.++|...|..++......++|||||
T Consensus 202 ~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~ 250 (460)
T PRK11776 202 DPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCN 250 (460)
T ss_pred CCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEEC
Confidence 9999988744455679999999999999999999999888889999997
No 23
>KOG0337|consensus
Probab=99.95 E-value=7.9e-28 Score=207.46 Aligned_cols=189 Identities=21% Similarity=0.191 Sum_probs=155.3
Q ss_pred hHHhHhhhc----------CccEEEecCccc-ccc-cCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcc
Q psy13288 8 HSILLILKK----------SDFTLKISCPRS-QLT-VQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTS 70 (200)
Q Consensus 8 ~~i~~~l~~----------~~~~l~~~~p~~-~~~-~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~ 70 (200)
.+||++|.+ +++|.++.+|.. ++. -...+.||+|+.||||||.|+.++++ .++++.+++||.+
T Consensus 50 KTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~ 129 (529)
T KOG0337|consen 50 KTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDS 129 (529)
T ss_pred ccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccch
Confidence 466777765 556777888873 322 22568999999999999999999999 7899999999998
Q ss_pred ccccC----CCCceeeeccccceeeeee-------eecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeC
Q psy13288 71 KFRSF----GKGDIFNAGSVSRITRHTF-------AMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATF 138 (200)
Q Consensus 71 ~~~~~----~~~~~~~~~TPgrl~~~~~-------v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~ 138 (200)
+..+| +..+++ +|||||++..-. -+.+.|.||||++|++||++++ .+++.++|.++|+ +||||+
T Consensus 130 ~eeqf~~l~~npDii-~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql---~e~l~rl~~~~QTllfSatl 205 (529)
T KOG0337|consen 130 IEEQFILLNENPDII-IATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQL---HEILSRLPESRQTLLFSATL 205 (529)
T ss_pred HHHHHHHhccCCCEE-EecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHH---HHHHHhCCCcceEEEEeccC
Confidence 75443 245555 799999982111 1112333888999999999999 9999999999999 999999
Q ss_pred chhHHHHHHHhCCCCeEEEec-cccccccceEEEEEcccccHHHHHHHHHhhC-CCCeEEEEeC
Q psy13288 139 PLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKC-CSLLGVFTCT 200 (200)
Q Consensus 139 ~~~v~~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~-~~~k~iIF~n 200 (200)
|..+-++++.-+.+|..++++ +....+.++..+..+.+++|..+|..++... ...++++||.
T Consensus 206 p~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~ 269 (529)
T KOG0337|consen 206 PRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVA 269 (529)
T ss_pred chhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEec
Confidence 999999999999999999998 7788889999999999999999999999865 3468999984
No 24
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.94 E-value=2.6e-27 Score=219.14 Aligned_cols=177 Identities=14% Similarity=0.146 Sum_probs=146.8
Q ss_pred hcCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEEeCCcccccc---C-CCCceeee
Q psy13288 15 KKSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK------VNLPLYVESQGTSKFRS---F-GKGDIFNA 83 (200)
Q Consensus 15 ~~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~~gg~~~~~~---~-~~~~~~~~ 83 (200)
.++++|++|.+|. +.+......+++|||+||||||.|+.+.++ .++++..++||.+...+ + ...+++ +
T Consensus 52 TGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IV-V 130 (629)
T PRK11634 52 TGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIV-V 130 (629)
T ss_pred CCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEE-E
Confidence 3466666677776 455555677999999999999999999887 37889999999865221 1 123443 7
Q ss_pred cccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhC
Q psy13288 84 GSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHL 150 (200)
Q Consensus 84 ~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l 150 (200)
+||||+. +.++|+ ||||.|++++|.+++ ..|++.+|+.+|+ +||||+|+.+..+++.|+
T Consensus 131 gTPgrl~d~l~r~~l~l~~l~~lVl-----DEAd~ml~~gf~~di---~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l 202 (629)
T PRK11634 131 GTPGRLLDHLKRGTLDLSKLSGLVL-----DEADEMLRMGFIEDV---ETIMAQIPEGHQTALFSATMPEAIRRITRRFM 202 (629)
T ss_pred ECHHHHHHHHHcCCcchhhceEEEe-----ccHHHHhhcccHHHH---HHHHHhCCCCCeEEEEEccCChhHHHHHHHHc
Confidence 9999997 233444 788999999999998 9999999999999 999999999999999999
Q ss_pred CCCeEEEec-cccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 151 KDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 151 ~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
++|..+.+. ...+...+.|.|+.+...+|...|..++......++|||||
T Consensus 203 ~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~ 253 (629)
T PRK11634 203 KEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVR 253 (629)
T ss_pred CCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEec
Confidence 999998876 55667789999999999999999999999887889999997
No 25
>PTZ00110 helicase; Provisional
Probab=99.94 E-value=1.7e-26 Score=211.04 Aligned_cols=184 Identities=17% Similarity=0.172 Sum_probs=145.1
Q ss_pred hHHhHhhhc----------CccEEEecCcc-cccc-----cCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEe
Q psy13288 8 HSILLILKK----------SDFTLKISCPR-SQLT-----VQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVES 66 (200)
Q Consensus 8 ~~i~~~l~~----------~~~~l~~~~p~-~~~~-----~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~ 66 (200)
.+||.++++ +++|++|.+|. .++. ....++++|||+||||||.|++++++ .++++.+++
T Consensus 159 ~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~ 238 (545)
T PTZ00110 159 QGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAY 238 (545)
T ss_pred HHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEe
Confidence 456666654 56666677776 3322 22357899999999999999999998 578899999
Q ss_pred CCcccccc---C-CCCceeeecccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCc
Q psy13288 67 QGTSKFRS---F-GKGDIFNAGSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKT 130 (200)
Q Consensus 67 gg~~~~~~---~-~~~~~~~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~ 130 (200)
||.+...+ + ...+++ ++||||+. +.++|+ ||||+|++.||..++ ..|+..+++++
T Consensus 239 gg~~~~~q~~~l~~~~~Il-VaTPgrL~d~l~~~~~~l~~v~~lVi-----DEAd~mld~gf~~~i---~~il~~~~~~~ 309 (545)
T PTZ00110 239 GGVPKRGQIYALRRGVEIL-IACPGRLIDFLESNVTNLRRVTYLVL-----DEADRMLDMGFEPQI---RKIVSQIRPDR 309 (545)
T ss_pred CCCCHHHHHHHHHcCCCEE-EECHHHHHHHHHcCCCChhhCcEEEe-----ehHHhhhhcchHHHH---HHHHHhCCCCC
Confidence 99865211 1 122443 79999987 234455 778999999999998 99999999999
Q ss_pred EE-EEEeeCchhHHHHHHHhCC-CCeEEEec--cccccccceEEEEEcccccHHHHHHHHHhhC--CCCeEEEEeC
Q psy13288 131 KV-SAIATFPLTVKNFMEKHLK-DPYEINLM--EELTLKGVTQYYAFVQERQKVHCLNTLFSKC--CSLLGVFTCT 200 (200)
Q Consensus 131 Q~-lfSAT~~~~v~~~~~~~l~-~~~~i~v~--~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~--~~~k~iIF~n 200 (200)
|+ +||||+|.+++.+++.++. +|+.+.+. +.....+++|.+..+++.+|...|..+++.. ...++|||||
T Consensus 310 q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~ 385 (545)
T PTZ00110 310 QTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVE 385 (545)
T ss_pred eEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEec
Confidence 99 9999999999999999986 68888776 3345578999999999999999999999875 4679999997
No 26
>KOG0347|consensus
Probab=99.94 E-value=1.7e-27 Score=210.83 Aligned_cols=178 Identities=16% Similarity=0.189 Sum_probs=139.6
Q ss_pred hhhcCccEEEecCcccc------------cccCCCCee--EEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc
Q psy13288 13 ILKKSDFTLKISCPRSQ------------LTVQELSLR--LVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR 73 (200)
Q Consensus 13 ~l~~~~~~l~~~~p~~~------------~~~~~~~~~--~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~ 73 (200)
+-.||++||||.+|... -+.....+| +||++||||||.||.+.++ .+++++.++||....+
T Consensus 226 AeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqK 305 (731)
T KOG0347|consen 226 AETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQK 305 (731)
T ss_pred cccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHH
Confidence 45679999999999842 122345666 9999999999999999998 8999999999987643
Q ss_pred c---CC-CCceeeecccccee---------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCC-----CC
Q psy13288 74 S---FG-KGDIFNAGSVSRIT---------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLE-----PK 129 (200)
Q Consensus 74 ~---~~-~~~~~~~~TPgrl~---------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~-----~~ 129 (200)
+ +. ..+|. +||||||. ++++|+ ||||||++.|+.+.+ ..|++.+. ..
T Consensus 306 QqRlL~~~p~IV-VATPGRlweli~e~n~~l~~~k~vkcLVl-----DEaDRmvekghF~El---s~lL~~L~e~~~~~q 376 (731)
T KOG0347|consen 306 QQRLLNQRPDIV-VATPGRLWELIEEDNTHLGNFKKVKCLVL-----DEADRMVEKGHFEEL---SKLLKHLNEEQKNRQ 376 (731)
T ss_pred HHHHHhcCCCEE-EecchHHHHHHHhhhhhhhhhhhceEEEE-----ccHHHHhhhccHHHH---HHHHHHhhhhhcccc
Confidence 2 22 34444 89999998 566777 566999999998888 66666654 35
Q ss_pred cEE-EEEeeCch---------------------hHHHHHHHh-C-CCCeEEEec-cccccccceEEEEEcccccHHHHHH
Q psy13288 130 TKV-SAIATFPL---------------------TVKNFMEKH-L-KDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLN 184 (200)
Q Consensus 130 ~Q~-lfSAT~~~---------------------~v~~~~~~~-l-~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~ 184 (200)
+|+ .||||++. .++.++++. + .+|..|++. ...+..++..-.+.|+..+|..+|+
T Consensus 377 rQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~yly 456 (731)
T KOG0347|consen 377 RQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLY 456 (731)
T ss_pred cceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEE
Confidence 799 99999972 233333332 2 367888876 7788889999999999999999999
Q ss_pred HHHhhCCCCeEEEEeC
Q psy13288 185 TLFSKCCSLLGVFTCT 200 (200)
Q Consensus 185 ~ll~~~~~~k~iIF~n 200 (200)
++|..+ +|++|||||
T Consensus 457 Yfl~ry-PGrTlVF~N 471 (731)
T KOG0347|consen 457 YFLTRY-PGRTLVFCN 471 (731)
T ss_pred EEEeec-CCceEEEec
Confidence 998764 689999998
No 27
>KOG0334|consensus
Probab=99.93 E-value=1.9e-26 Score=215.83 Aligned_cols=182 Identities=21% Similarity=0.205 Sum_probs=147.8
Q ss_pred hcCccEEEecCcc-ccccc-----CCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccccC----CCCc
Q psy13288 15 KKSDFTLKISCPR-SQLTV-----QELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRSF----GKGD 79 (200)
Q Consensus 15 ~~~~~~l~~~~p~-~~~~~-----~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~~----~~~~ 79 (200)
.+|++|++|.+|. .++.. ...+|-|||++||||||.||+++++ .++++++++||.....+. ...+
T Consensus 411 TgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~e 490 (997)
T KOG0334|consen 411 TGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAE 490 (997)
T ss_pred cCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCc
Confidence 4578899998888 33322 2359999999999999999999998 799999999998763221 1134
Q ss_pred eeeeccccceee----------eeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHH
Q psy13288 80 IFNAGSVSRITR----------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEK 148 (200)
Q Consensus 80 ~~~~~TPgrl~~----------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~ 148 (200)
+. ++||||... ++.-....+.||||+||++||.+++ ..|+++++..+|+ +||||||-.++.++.+
T Consensus 491 Iv-V~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~---~~Ii~nlrpdrQtvlfSatfpr~m~~la~~ 566 (997)
T KOG0334|consen 491 IV-VCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQI---TRILQNLRPDRQTVLFSATFPRSMEALARK 566 (997)
T ss_pred eE-EeccchhhhhHhhcCCccccccccceeeechhhhhheeccCccc---chHHhhcchhhhhhhhhhhhhHHHHHHHHH
Confidence 43 699999881 1111112233778999999999998 7799999999999 9999999999999999
Q ss_pred hCCCCeEEEec-cccccccceEEEEEcc-cccHHHHHHHHHhhC-CCCeEEEEeC
Q psy13288 149 HLKDPYEINLM-EELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKC-CSLLGVFTCT 200 (200)
Q Consensus 149 ~l~~~~~i~v~-~~~~~~~i~q~~i~~~-~~~K~~~L~~ll~~~-~~~k~iIF~n 200 (200)
.++.|+.+.++ .......+.|.+..|. +.+|+..|..||... ..+++||||.
T Consensus 567 vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~ 621 (997)
T KOG0334|consen 567 VLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVD 621 (997)
T ss_pred hhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEc
Confidence 99999999888 6666778999999999 789999999999854 5789999994
No 28
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=3.4e-26 Score=203.01 Aligned_cols=176 Identities=18% Similarity=0.212 Sum_probs=140.8
Q ss_pred cCccEEEecCccc-ccc-------cCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc---C-CCC
Q psy13288 16 KSDFTLKISCPRS-QLT-------VQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS---F-GKG 78 (200)
Q Consensus 16 ~~~~~l~~~~p~~-~~~-------~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~---~-~~~ 78 (200)
|+|+|++|.+|.. .+. ...+++++|||+||||||.|++++++ .++++..++||.+...+ . +..
T Consensus 55 GsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 134 (423)
T PRK04837 55 GTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 134 (423)
T ss_pred CchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCC
Confidence 3555666666662 221 12356899999999999999999887 67899999999764221 1 123
Q ss_pred ceeeecccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCC--CcEE-EEEeeCchhHH
Q psy13288 79 DIFNAGSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEP--KTKV-SAIATFPLTVK 143 (200)
Q Consensus 79 ~~~~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~--~~Q~-lfSAT~~~~v~ 143 (200)
+++ +|||||+. ++++|+ ||||+|++.||..++ ..+++.+|. .+|. +||||++..+.
T Consensus 135 ~Il-V~TP~~l~~~l~~~~~~l~~v~~lVi-----DEad~l~~~~f~~~i---~~i~~~~~~~~~~~~~l~SAT~~~~~~ 205 (423)
T PRK04837 135 DIL-IGTTGRLIDYAKQNHINLGAIQVVVL-----DEADRMFDLGFIKDI---RWLFRRMPPANQRLNMLFSATLSYRVR 205 (423)
T ss_pred CEE-EECHHHHHHHHHcCCcccccccEEEE-----ecHHHHhhcccHHHH---HHHHHhCCCccceeEEEEeccCCHHHH
Confidence 444 79999996 344555 778999999999998 999999984 5778 99999999999
Q ss_pred HHHHHhCCCCeEEEec-cccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 144 NFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 144 ~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
+++..++++|..+.+. .......+.|.++++...+|...|..+++.....++|||||
T Consensus 206 ~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~ 263 (423)
T PRK04837 206 ELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFAN 263 (423)
T ss_pred HHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 9999999999999876 55666789999998888899999999998877889999997
No 29
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.93 E-value=1.4e-25 Score=201.12 Aligned_cols=177 Identities=23% Similarity=0.235 Sum_probs=142.9
Q ss_pred hcCccEEEecCccc-cccc------CCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc----CCCC
Q psy13288 15 KKSDFTLKISCPRS-QLTV------QELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS----FGKG 78 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~~~------~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~----~~~~ 78 (200)
.++++|++|.+|.. .+.. ....+++|||+||||||.|+.+.++ .++++..++||.+..++ .+..
T Consensus 47 TGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~ 126 (456)
T PRK10590 47 TGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGV 126 (456)
T ss_pred CCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCC
Confidence 34566666777762 2221 1234699999999999999999988 57888899999875221 1233
Q ss_pred ceeeecccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHH
Q psy13288 79 DIFNAGSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNF 145 (200)
Q Consensus 79 ~~~~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~ 145 (200)
+++ ++||||+. ..++|+ ||||+|++.+|..++ ..++..+|..+|+ +||||++.++..+
T Consensus 127 ~Ii-V~TP~rL~~~~~~~~~~l~~v~~lVi-----DEah~ll~~~~~~~i---~~il~~l~~~~q~l~~SAT~~~~~~~l 197 (456)
T PRK10590 127 DVL-VATPGRLLDLEHQNAVKLDQVEILVL-----DEADRMLDMGFIHDI---RRVLAKLPAKRQNLLFSATFSDDIKAL 197 (456)
T ss_pred cEE-EEChHHHHHHHHcCCcccccceEEEe-----ecHHHHhccccHHHH---HHHHHhCCccCeEEEEeCCCcHHHHHH
Confidence 444 79999996 334555 778999999999998 9999999999999 9999999999999
Q ss_pred HHHhCCCCeEEEec-cccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 146 MEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 146 ~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
+..++.+|..+.+. .......+.|++.+++..+|...|..++......++|||||
T Consensus 198 ~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~ 253 (456)
T PRK10590 198 AEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTR 253 (456)
T ss_pred HHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcC
Confidence 99999999988776 55556789999999999999999999998777789999997
No 30
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=1.3e-25 Score=206.19 Aligned_cols=189 Identities=19% Similarity=0.174 Sum_probs=147.0
Q ss_pred hHHhHhhhc----------CccEEEecCccc-ccc-------cCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEE
Q psy13288 8 HSILLILKK----------SDFTLKISCPRS-QLT-------VQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYV 64 (200)
Q Consensus 8 ~~i~~~l~~----------~~~~l~~~~p~~-~~~-------~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~ 64 (200)
.+||.+|++ +++|++|.+|.. ++. ...+.+++|||+||||||.|+++.++ .++++..
T Consensus 38 ~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~ 117 (572)
T PRK04537 38 LTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFAL 117 (572)
T ss_pred HHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEE
Confidence 356667654 566666777763 221 12236899999999999999999988 6788999
Q ss_pred EeCCcccccc---C-CCCceeeeccccceeee-----ee---eecCCCCChhhccccccchhhhhcHHHHHhhCCC--Cc
Q psy13288 65 ESQGTSKFRS---F-GKGDIFNAGSVSRITRH-----TF---AMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEP--KT 130 (200)
Q Consensus 65 ~~gg~~~~~~---~-~~~~~~~~~TPgrl~~~-----~~---v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~--~~ 130 (200)
++||.+...+ + +..+++ ++|||||... .+ -+.-.+.||||+|++.+|..++ ..+++.+|. ++
T Consensus 118 l~Gg~~~~~q~~~l~~~~dIi-V~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i---~~il~~lp~~~~~ 193 (572)
T PRK04537 118 VYGGVDYDKQRELLQQGVDVI-IATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI---RFLLRRMPERGTR 193 (572)
T ss_pred EECCCCHHHHHHHHhCCCCEE-EECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHH---HHHHHhcccccCc
Confidence 9999875221 1 123444 7999998721 11 0111233888999999999998 999999987 78
Q ss_pred EE-EEEeeCchhHHHHHHHhCCCCeEEEec-cccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 131 KV-SAIATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 131 Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
|+ +||||++..+..++..++++|..+.+. .......++|+++.+...+|...|..+++.....++|||||
T Consensus 194 q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~n 265 (572)
T PRK04537 194 QTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVN 265 (572)
T ss_pred eEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeC
Confidence 99 999999999999999999999888776 55667789999999998999999999998877889999997
No 31
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.92 E-value=5.2e-25 Score=200.23 Aligned_cols=177 Identities=17% Similarity=0.158 Sum_probs=141.1
Q ss_pred hhcCccEEEecCccc-ccc-------cCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc---C-C
Q psy13288 14 LKKSDFTLKISCPRS-QLT-------VQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS---F-G 76 (200)
Q Consensus 14 l~~~~~~l~~~~p~~-~~~-------~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~---~-~ 76 (200)
=.|+|+|++|..|.. ++. ....++++|||+||||||.|+.++++ .++++..++||.....+ + .
T Consensus 166 pTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~ 245 (518)
T PLN00206 166 DTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQ 245 (518)
T ss_pred cCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcC
Confidence 345788888888873 221 23367999999999999999999988 56788889999875322 1 1
Q ss_pred CCceeeecccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHH
Q psy13288 77 KGDIFNAGSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVK 143 (200)
Q Consensus 77 ~~~~~~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~ 143 (200)
..+++ ++||||+. ..++|+ ||||+|++.||.+++ ..+++.++ +.|+ +||||++.++.
T Consensus 246 ~~~Ii-V~TPgrL~~~l~~~~~~l~~v~~lVi-----DEad~ml~~gf~~~i---~~i~~~l~-~~q~l~~SATl~~~v~ 315 (518)
T PLN00206 246 GVELI-VGTPGRLIDLLSKHDIELDNVSVLVL-----DEVDCMLERGFRDQV---MQIFQALS-QPQVLLFSATVSPEVE 315 (518)
T ss_pred CCCEE-EECHHHHHHHHHcCCccchheeEEEe-----ecHHHHhhcchHHHH---HHHHHhCC-CCcEEEEEeeCCHHHH
Confidence 23443 79999986 344555 778999999999998 88998885 6899 99999999999
Q ss_pred HHHHHhCCCCeEEEec-cccccccceEEEEEcccccHHHHHHHHHhhCC--CCeEEEEeC
Q psy13288 144 NFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKCC--SLLGVFTCT 200 (200)
Q Consensus 144 ~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~--~~k~iIF~n 200 (200)
.++..+++++..+.+. .......++|.++.++..+|...|..++.... .+++|||||
T Consensus 316 ~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~ 375 (518)
T PLN00206 316 KFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVS 375 (518)
T ss_pred HHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcC
Confidence 9999999999999887 45556678999999999899999999887543 368999997
No 32
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.91 E-value=7.3e-24 Score=188.52 Aligned_cols=177 Identities=18% Similarity=0.231 Sum_probs=138.6
Q ss_pred hcCccEEEecCccc-ccc----cCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc---C-CCCce
Q psy13288 15 KKSDFTLKISCPRS-QLT----VQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS---F-GKGDI 80 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~~----~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~---~-~~~~~ 80 (200)
.|+|+|+++..|.. ++. .....+++||++||||||.|+++.+. .++++..+.||.+..+. + +..++
T Consensus 47 TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~I 126 (434)
T PRK11192 47 TGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDI 126 (434)
T ss_pred CCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCE
Confidence 34555555666653 221 12235799999999999999999887 67899999999865221 1 22344
Q ss_pred eeecccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCch-hHHHHH
Q psy13288 81 FNAGSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPL-TVKNFM 146 (200)
Q Consensus 81 ~~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~-~v~~~~ 146 (200)
+ +|||||++ ..++|+ ||||+|++.+|..++ ..+...++..+|+ +||||++. .+..++
T Consensus 127 l-V~Tp~rl~~~~~~~~~~~~~v~~lVi-----DEah~~l~~~~~~~~---~~i~~~~~~~~q~~~~SAT~~~~~~~~~~ 197 (434)
T PRK11192 127 V-VATPGRLLQYIKEENFDCRAVETLIL-----DEADRMLDMGFAQDI---ETIAAETRWRKQTLLFSATLEGDAVQDFA 197 (434)
T ss_pred E-EEChHHHHHHHHcCCcCcccCCEEEE-----ECHHHHhCCCcHHHH---HHHHHhCccccEEEEEEeecCHHHHHHHH
Confidence 4 79999997 233444 778999999999998 8999999989999 99999984 688999
Q ss_pred HHhCCCCeEEEec-cccccccceEEEEEccc-ccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 147 EKHLKDPYEINLM-EELTLKGVTQYYAFVQE-RQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 147 ~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~-~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
+.++++|..+.+. ......++.|+|..++. +.|...|..+++.....++|||||
T Consensus 198 ~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~ 253 (434)
T PRK11192 198 ERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVR 253 (434)
T ss_pred HHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 9999999998876 55566789999988875 679999999998777789999997
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=1.3e-23 Score=189.22 Aligned_cols=177 Identities=18% Similarity=0.136 Sum_probs=140.5
Q ss_pred hcCccEEEecCcc-cccccC-------CCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc---cC--C
Q psy13288 15 KKSDFTLKISCPR-SQLTVQ-------ELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR---SF--G 76 (200)
Q Consensus 15 ~~~~~~l~~~~p~-~~~~~~-------~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~---~~--~ 76 (200)
.++|+|++|..|. +++..+ .+.+++|||+||||||.|+++.++ .++++..+.||.+... .+ +
T Consensus 133 TGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~ 212 (475)
T PRK01297 133 TGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEAR 212 (475)
T ss_pred CCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCC
Confidence 3456666677776 333221 126899999999999999999988 5788888999865421 11 1
Q ss_pred CCceeeecccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCC--CcEE-EEEeeCchh
Q psy13288 77 KGDIFNAGSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEP--KTKV-SAIATFPLT 141 (200)
Q Consensus 77 ~~~~~~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~--~~Q~-lfSAT~~~~ 141 (200)
..+++ ++||||+. .+++|+ ||||++++.+|..++ ..+++.++. ++|+ +||||++.+
T Consensus 213 ~~~Ii-v~TP~~Ll~~~~~~~~~l~~l~~lVi-----DEah~l~~~~~~~~l---~~i~~~~~~~~~~q~i~~SAT~~~~ 283 (475)
T PRK01297 213 FCDIL-VATPGRLLDFNQRGEVHLDMVEVMVL-----DEADRMLDMGFIPQV---RQIIRQTPRKEERQTLLFSATFTDD 283 (475)
T ss_pred CCCEE-EECHHHHHHHHHcCCcccccCceEEe-----chHHHHHhcccHHHH---HHHHHhCCCCCCceEEEEEeecCHH
Confidence 23444 79999997 234445 778999999999998 899998865 5799 999999999
Q ss_pred HHHHHHHhCCCCeEEEec-cccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 142 VKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 142 v~~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
+.++++.++.+|..+.+. .+....++.|++..+...+|...|..++......++|||||
T Consensus 284 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~ 343 (475)
T PRK01297 284 VMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFAN 343 (475)
T ss_pred HHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeC
Confidence 999999999999998876 56666788999998999999999999998877789999997
No 34
>KOG0350|consensus
Probab=99.90 E-value=2.5e-24 Score=189.03 Aligned_cols=182 Identities=17% Similarity=0.099 Sum_probs=143.4
Q ss_pred hhhcCccEEEecCcccccccC--CCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc---C------C
Q psy13288 13 ILKKSDFTLKISCPRSQLTVQ--ELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS---F------G 76 (200)
Q Consensus 13 ~l~~~~~~l~~~~p~~~~~~~--~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~---~------~ 76 (200)
+=.|||+||+|++|.-|.... -+.+|||||+||||||.||+++|+ .++.++.+.|..+...+ + .
T Consensus 190 ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~ 269 (620)
T KOG0350|consen 190 APTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPEC 269 (620)
T ss_pred cCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCcc
Confidence 446899999999999664332 478999999999999999999999 78889988888776221 1 1
Q ss_pred CCceeeeccccceee-------------eeeeecCCCCChhhccccccchhhhhcHHHHHhhC-----------------
Q psy13288 77 KGDIFNAGSVSRITR-------------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSL----------------- 126 (200)
Q Consensus 77 ~~~~~~~~TPgrl~~-------------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l----------------- 126 (200)
.-+++ ++|||||+. +++|+ ||||||+++.|++|+.++....+..
T Consensus 270 ~~DIl-VaTPGRLVDHl~~~k~f~Lk~LrfLVI-----DEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~ 343 (620)
T KOG0350|consen 270 RIDIL-VATPGRLVDHLNNTKSFDLKHLRFLVI-----DEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQ 343 (620)
T ss_pred ccceE-EcCchHHHHhccCCCCcchhhceEEEe-----chHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCC
Confidence 12444 699999993 44555 7789999999999996544333221
Q ss_pred --------------CCCcEE-EEEeeCchhHHHHHHHhCCCCeEEEec-----cccccccceEEEEEcccccHHHHHHHH
Q psy13288 127 --------------EPKTKV-SAIATFPLTVKNFMEKHLKDPYEINLM-----EELTLKGVTQYYAFVQERQKVHCLNTL 186 (200)
Q Consensus 127 --------------~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~-----~~~~~~~i~q~~i~~~~~~K~~~L~~l 186 (200)
++..+. +||||++.+-.++...-++.|....+. ....+..+.|+++.++...|..+++.+
T Consensus 344 pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~l 423 (620)
T KOG0350|consen 344 PTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYAL 423 (620)
T ss_pred chhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHH
Confidence 122356 899999999999999889999555432 567788899999999999999999999
Q ss_pred HhhCCCCeEEEEeC
Q psy13288 187 FSKCCSLLGVFTCT 200 (200)
Q Consensus 187 l~~~~~~k~iIF~n 200 (200)
++..+..++|+|+|
T Consensus 424 I~~~k~~r~lcf~~ 437 (620)
T KOG0350|consen 424 ITSNKLNRTLCFVN 437 (620)
T ss_pred HHHhhcceEEEEec
Confidence 99988899999986
No 35
>PTZ00424 helicase 45; Provisional
Probab=99.87 E-value=8.9e-22 Score=172.87 Aligned_cols=178 Identities=21% Similarity=0.283 Sum_probs=141.4
Q ss_pred hhcCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc---CC-CCceeee
Q psy13288 14 LKKSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS---FG-KGDIFNA 83 (200)
Q Consensus 14 l~~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~---~~-~~~~~~~ 83 (200)
-.|+|+|+.|..|. ..+....++.++||++||||||.|+.+.++ .++++..+.||...... .. ..++ .+
T Consensus 73 pTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I-vv 151 (401)
T PTZ00424 73 QSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHM-VV 151 (401)
T ss_pred CCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCE-EE
Confidence 34566777777776 344444567899999999999999999887 46777778888754111 11 2244 37
Q ss_pred cccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhC
Q psy13288 84 GSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHL 150 (200)
Q Consensus 84 ~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l 150 (200)
+|||++. ..++|+ ||||++++.+|...+ .+++++++++.|+ ++|||+|.++.++...++
T Consensus 152 ~Tp~~l~~~l~~~~~~l~~i~lvVi-----DEah~~~~~~~~~~~---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 223 (401)
T PTZ00424 152 GTPGRVYDMIDKRHLRVDDLKLFIL-----DEADEMLSRGFKGQI---YDVFKKLPPDVQVALFSATMPNEILELTTKFM 223 (401)
T ss_pred ECcHHHHHHHHhCCcccccccEEEE-----ecHHHHHhcchHHHH---HHHHhhCCCCcEEEEEEecCCHHHHHHHHHHc
Confidence 9999976 244455 778999999999888 8999999999999 999999999999999999
Q ss_pred CCCeEEEec-cccccccceEEEEEccc-ccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 151 KDPYEINLM-EELTLKGVTQYYAFVQE-RQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 151 ~~~~~i~v~-~~~~~~~i~q~~i~~~~-~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
.+|..+.+. .+....+++++|+.++. +.|...+..+++.....++|||||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~ 275 (401)
T PTZ00424 224 RDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCN 275 (401)
T ss_pred CCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 999988776 56677889999998875 468888999988877889999996
No 36
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.83 E-value=2e-20 Score=175.92 Aligned_cols=177 Identities=12% Similarity=0.070 Sum_probs=126.8
Q ss_pred hhhcCccEEEecCcccccccCCCCeeEEEE-cCCHHHHHHHHHHhh-----c-----------------------CCcEE
Q psy13288 13 ILKKSDFTLKISCPRSQLTVQELSLRLVMC-VIFREVLLKISSWEK-----V-----------------------NLPLY 63 (200)
Q Consensus 13 ~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl-~PTRELa~Qi~~~~~-----~-----------------------~l~~~ 63 (200)
+-.|+++|.+++++...+..+...+|+||+ +||||||.|+++.++ . ++++.
T Consensus 38 apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 117 (844)
T TIGR02621 38 TPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAIS 117 (844)
T ss_pred cCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEE
Confidence 345688888665555444566678999994 599999999999998 2 38889
Q ss_pred EEeCCcccccc---CCCCceeeeccc----ccee--------------------eeeeeecCCCCChhhccccccchhhh
Q psy13288 64 VESQGTSKFRS---FGKGDIFNAGSV----SRIT--------------------RHTFAMTPSVGPIVDRKFGQIFNGQI 116 (200)
Q Consensus 64 ~~~gg~~~~~~---~~~~~~~~~~TP----grl~--------------------~~~~v~d~~~~DEAD~ll~~~f~~~i 116 (200)
.++||.+..++ ......+.+||+ +|.+ .+++|+ |||| ++++|.+++
T Consensus 118 ~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVL-----DEAD--Ld~gF~~~l 190 (844)
T TIGR02621 118 TLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVH-----DEAH--LEPAFQELL 190 (844)
T ss_pred EEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceEEEE-----ehhh--hccccHHHH
Confidence 99999876322 222223337998 3332 234444 7789 889999998
Q ss_pred hcHHHHHhhC--CCC---cEE-EEEeeCchhHHHHHHHhCCCCeEEEec-cccccccceEEEEEcccccHHHHHHHHHh-
Q psy13288 117 LVPKHVLRSL--EPK---TKV-SAIATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFS- 188 (200)
Q Consensus 117 ~~i~~i~~~l--~~~---~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~- 188 (200)
..|++.+ ++. +|+ +||||++.++.++++.++.+|..+.+. ...+..++.|+ +.++.+.|...+...+.
T Consensus 191 ---~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ 266 (844)
T TIGR02621 191 ---KQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL-VPPSDEKFLSTMVKELNL 266 (844)
T ss_pred ---HHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEE-EecChHHHHHHHHHHHHH
Confidence 8888864 442 699 999999999999999999888887765 66667788885 44565556655443321
Q ss_pred --hCCCCeEEEEeC
Q psy13288 189 --KCCSLLGVFTCT 200 (200)
Q Consensus 189 --~~~~~k~iIF~n 200 (200)
....+++|||||
T Consensus 267 ll~e~g~~vLVF~N 280 (844)
T TIGR02621 267 LMKDSGGAILVFCR 280 (844)
T ss_pred HHhhCCCcEEEEEC
Confidence 235678999998
No 37
>PRK09401 reverse gyrase; Reviewed
Probab=99.81 E-value=9.9e-20 Score=177.78 Aligned_cols=181 Identities=13% Similarity=0.053 Sum_probs=127.3
Q ss_pred hHHhHhhhcCccEEE---------ecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccc
Q psy13288 8 HSILLILKKSDFTLK---------ISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKF 72 (200)
Q Consensus 8 ~~i~~~l~~~~~~l~---------~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~ 72 (200)
.+||.++++.|+.+. +..|. ..+ ..++.+++||+||||||.|+.+.++ .++++..+.||.+..
T Consensus 87 ~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l--~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~ 164 (1176)
T PRK09401 87 TWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYL--AKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLK 164 (1176)
T ss_pred HHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHH--HhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcc
Confidence 467778877776653 22332 122 2357899999999999999999998 567777777775421
Q ss_pred --------ccC--CCCceeeeccccceeeeeee-----ecCCCCChhhcccc-----------ccch-hhhhcHHHHHhh
Q psy13288 73 --------RSF--GKGDIFNAGSVSRITRHTFA-----MTPSVGPIVDRKFG-----------QIFN-GQILVPKHVLRS 125 (200)
Q Consensus 73 --------~~~--~~~~~~~~~TPgrl~~~~~v-----~d~~~~DEAD~ll~-----------~~f~-~~i~~i~~i~~~ 125 (200)
..+ +..+++ +|||||+..++.. ++..+.||||+|++ .||. +++ ..+++.
T Consensus 165 ~~ek~~~~~~l~~~~~~Il-V~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i---~~i~~~ 240 (1176)
T PRK09401 165 KKEKEEFLERLKEGDFDIL-VTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDI---EKAMEL 240 (1176)
T ss_pred hhHHHHHHHHHhcCCCCEE-EECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHH---HHHHHh
Confidence 011 234554 8999999832211 22223378899996 7896 566 777777
Q ss_pred CCC------------------------CcEE-EEEeeCchh-HHHHHHHhCCCCeEEEec-cccccccceEEEEEccccc
Q psy13288 126 LEP------------------------KTKV-SAIATFPLT-VKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQ 178 (200)
Q Consensus 126 l~~------------------------~~Q~-lfSAT~~~~-v~~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~ 178 (200)
+|. ++|+ +||||+++. ++. .+++++..+.++ ......+|.|.|+.++ +
T Consensus 241 i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~ 315 (1176)
T PRK09401 241 IRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLRNIVDSYIVDE--D 315 (1176)
T ss_pred cccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcccccCCceEEEEEcc--c
Confidence 764 6899 999999864 443 345677777776 5567789999999877 7
Q ss_pred HHHHHHHHHhhCCCCeEEEEeC
Q psy13288 179 KVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 179 K~~~L~~ll~~~~~~k~iIF~n 200 (200)
|...|..+++... .++|||||
T Consensus 316 k~~~L~~ll~~l~-~~~LIFv~ 336 (1176)
T PRK09401 316 SVEKLVELVKRLG-DGGLIFVP 336 (1176)
T ss_pred HHHHHHHHHHhcC-CCEEEEEe
Confidence 8888999988764 58999996
No 38
>KOG0344|consensus
Probab=99.77 E-value=2.4e-19 Score=160.20 Aligned_cols=178 Identities=20% Similarity=0.170 Sum_probs=134.7
Q ss_pred hhhcCccEEEecCcc-ccc-----ccCCCCeeEEEEcCCHHHHHHHHHHhh-c------CCcEEEEeCCcc-ccc-cC--
Q psy13288 13 ILKKSDFTLKISCPR-SQL-----TVQELSLRLVMCVIFREVLLKISSWEK-V------NLPLYVESQGTS-KFR-SF-- 75 (200)
Q Consensus 13 ~l~~~~~~l~~~~p~-~~~-----~~~~~~~~~lIl~PTRELa~Qi~~~~~-~------~l~~~~~~gg~~-~~~-~~-- 75 (200)
+=.|||.||+|.+|. +++ ..+..+.+++|+.||||||.|++.++. . +++......... ..+ .+
T Consensus 180 apTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~ 259 (593)
T KOG0344|consen 180 APTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLS 259 (593)
T ss_pred ccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhH
Confidence 345788999999998 332 223678999999999999999999998 2 222222211110 000 00
Q ss_pred -CCCceeeecccccee--------------eeeeeecCCCCChhhccccc-cchhhhhcHHHHHhhCC-CCcEE-EEEee
Q psy13288 76 -GKGDIFNAGSVSRIT--------------RHTFAMTPSVGPIVDRKFGQ-IFNGQILVPKHVLRSLE-PKTKV-SAIAT 137 (200)
Q Consensus 76 -~~~~~~~~~TPgrl~--------------~~~~v~d~~~~DEAD~ll~~-~f~~~i~~i~~i~~~l~-~~~Q~-lfSAT 137 (200)
.+.++. ++||.|+. +.++|+ ||||++|+. +|.+++ ..|++.+. ++..+ +||||
T Consensus 260 ~~k~dil-i~TP~ri~~~~~~~~~~idl~~V~~lV~-----dEaD~lfe~~~f~~Ql---a~I~sac~s~~i~~a~FSat 330 (593)
T KOG0344|consen 260 DEKYDIL-ISTPMRIVGLLGLGKLNIDLSKVEWLVV-----DEADLLFEPEFFVEQL---ADIYSACQSPDIRVALFSAT 330 (593)
T ss_pred HHHHHHH-hcCHHHHHHHhcCCCccchhheeeeEee-----chHHhhhChhhHHHHH---HHHHHHhcCcchhhhhhhcc
Confidence 111222 49999987 233444 788999999 999998 88887764 45666 99999
Q ss_pred CchhHHHHHHHhCCCCeEEEec-cccccccceEEEEEcccc-cHHHHHHHHHhhCCCCeEEEEe
Q psy13288 138 FPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQER-QKVHCLNTLFSKCCSLLGVFTC 199 (200)
Q Consensus 138 ~~~~v~~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~-~K~~~L~~ll~~~~~~k~iIF~ 199 (200)
++..|.++++..+.++..+.++ .+.....|+|..++|..+ .|+.++..++...-..+++||+
T Consensus 331 ~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfV 394 (593)
T KOG0344|consen 331 ISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFV 394 (593)
T ss_pred ccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEE
Confidence 9999999999999999999998 677788999999999865 5999999999988788999997
No 39
>PRK14701 reverse gyrase; Provisional
Probab=99.74 E-value=2.4e-17 Score=164.74 Aligned_cols=183 Identities=14% Similarity=0.086 Sum_probs=124.3
Q ss_pred hHHhHhhhcCccEEEecCcccc--------cccCCCCeeEEEEcCCHHHHHHHHHHhh-------cCCcEEEEeCCcccc
Q psy13288 8 HSILLILKKSDFTLKISCPRSQ--------LTVQELSLRLVMCVIFREVLLKISSWEK-------VNLPLYVESQGTSKF 72 (200)
Q Consensus 8 ~~i~~~l~~~~~~l~~~~p~~~--------~~~~~~~~~~lIl~PTRELa~Qi~~~~~-------~~l~~~~~~gg~~~~ 72 (200)
.+||.++++.|+.+..-.-.-+ +....++.++|||+||||||.|+.+.++ .++++....||.+..
T Consensus 86 ~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~ 165 (1638)
T PRK14701 86 TWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKK 165 (1638)
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHH
Confidence 4678888888776532111110 1112356799999999999999999998 246667778887642
Q ss_pred cc------C--CCCceeeeccccceee----------eeeeecCCCCChhhcccc-----------ccchhhhhc-HHHH
Q psy13288 73 RS------F--GKGDIFNAGSVSRITR----------HTFAMTPSVGPIVDRKFG-----------QIFNGQILV-PKHV 122 (200)
Q Consensus 73 ~~------~--~~~~~~~~~TPgrl~~----------~~~v~d~~~~DEAD~ll~-----------~~f~~~i~~-i~~i 122 (200)
.+ + +..+++ ++||||+.. .++|+ ||||+|++ .||.+++.. +.+|
T Consensus 166 e~~~~~~~l~~g~~dIL-V~TPgrL~~~~~~l~~~~i~~iVV-----DEAD~ml~~~knid~~L~llGF~~e~~~~~~~i 239 (1638)
T PRK14701 166 EKEEFLERIENGDFDIL-VTTAQFLARNFPEMKHLKFDFIFV-----DDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKI 239 (1638)
T ss_pred HHHHHHHHHhcCCCCEE-EECCchhHHhHHHHhhCCCCEEEE-----ECceeccccccccchhhhcCCChHHHHHHHHHh
Confidence 11 1 223544 799999983 33444 77799986 699888721 0113
Q ss_pred Hh----------------------hCCCCcE-E-EEEeeCchhHHHHHHHhCCCCeEEEec-cccccccceEEEEEcccc
Q psy13288 123 LR----------------------SLEPKTK-V-SAIATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQER 177 (200)
Q Consensus 123 ~~----------------------~l~~~~Q-~-lfSAT~~~~v~~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~ 177 (200)
++ .+|+.+| + +||||++.. .....+++++..+.++ ...+..++.|+|+.++..
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~ 317 (1638)
T PRK14701 240 IYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLYRELLGFEVGSGRSALRNIVDVYLNPEKI 317 (1638)
T ss_pred hhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHhhcCeEEEecCCCCCCCCcEEEEEECCHH
Confidence 32 3466677 4 799999853 1122455788888887 667788999999988766
Q ss_pred cHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 178 QKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 178 ~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
+| ..|..+++.. ..++|||||
T Consensus 318 ~k-~~L~~ll~~~-g~~gIVF~~ 338 (1638)
T PRK14701 318 IK-EHVRELLKKL-GKGGLIFVP 338 (1638)
T ss_pred HH-HHHHHHHHhC-CCCeEEEEe
Confidence 66 5788888876 468999996
No 40
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.73 E-value=1.1e-17 Score=163.62 Aligned_cols=182 Identities=13% Similarity=0.103 Sum_probs=119.6
Q ss_pred hHHhHhhhcCccEEE---------ecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEE---EEeCCcc
Q psy13288 8 HSILLILKKSDFTLK---------ISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLY---VESQGTS 70 (200)
Q Consensus 8 ~~i~~~l~~~~~~l~---------~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~---~~~gg~~ 70 (200)
.+||.++.++|+.+. +.+|..... ...+++++||+||||||.|+++.++ .++++. ...||.+
T Consensus 85 ~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l-~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~ 163 (1171)
T TIGR01054 85 MWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFL-AKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLP 163 (1171)
T ss_pred HHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHH-HhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCC
Confidence 466777777766542 334432211 2247899999999999999999998 345543 3567765
Q ss_pred ccc------cC--CCCceeeeccccceeeeeee----ecCCCCChhhcccc-----------ccchhh-hhcHHHH----
Q psy13288 71 KFR------SF--GKGDIFNAGSVSRITRHTFA----MTPSVGPIVDRKFG-----------QIFNGQ-ILVPKHV---- 122 (200)
Q Consensus 71 ~~~------~~--~~~~~~~~~TPgrl~~~~~v----~d~~~~DEAD~ll~-----------~~f~~~-i~~i~~i---- 122 (200)
... .+ +..+++ +|||||+...+.. ++-.+.||||+|++ .||.++ + +.+
T Consensus 164 ~~e~~~~~~~l~~~~~dIl-V~Tp~rL~~~~~~l~~~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i---~~il~~~ 239 (1171)
T TIGR01054 164 TKEKKEFMERIENGDFDIL-ITTTMFLSKNYDELGPKFDFIFVDDVDALLKASKNVDKLLKLLGFSEELI---EKAWKLI 239 (1171)
T ss_pred HHHHHHHHHHHhcCCCCEE-EECHHHHHHHHHHhcCCCCEEEEeChHhhhhccccHHHHHHHcCCCHHHH---HHHHHHh
Confidence 421 11 224554 7999999832111 11222378899998 789875 4 443
Q ss_pred ------------------HhhCCCCcE--E-EEEee-CchhHHHHHHHhCCCCeEEEec-cccccccceEEEEEcccccH
Q psy13288 123 ------------------LRSLEPKTK--V-SAIAT-FPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQK 179 (200)
Q Consensus 123 ------------------~~~l~~~~Q--~-lfSAT-~~~~v~~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K 179 (200)
++.+|+++| + +|||| +|..++. .+++++..+.++ ......+|.|+|+.++. +
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~--~ 314 (1171)
T TIGR01054 240 RLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGGSDTLRNVVDVYVEDED--L 314 (1171)
T ss_pred hhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecCccccccceEEEEEeccc--H
Confidence 345666666 5 69999 6766543 456777777776 55677899999987654 3
Q ss_pred HHHHHHHHhhCCCCeEEEEeC
Q psy13288 180 VHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 180 ~~~L~~ll~~~~~~k~iIF~n 200 (200)
...|..+++... .++|||||
T Consensus 315 ~~~L~~ll~~l~-~~~IVFv~ 334 (1171)
T TIGR01054 315 KETLLEIVKKLG-TGGIVYVS 334 (1171)
T ss_pred HHHHHHHHHHcC-CCEEEEEe
Confidence 456778887653 68999996
No 41
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.73 E-value=1.2e-17 Score=157.54 Aligned_cols=173 Identities=9% Similarity=0.004 Sum_probs=113.6
Q ss_pred cCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh----cCCcEEEEeCCccccc--c-CCCCceeeecccc
Q psy13288 16 KSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK----VNLPLYVESQGTSKFR--S-FGKGDIFNAGSVS 87 (200)
Q Consensus 16 ~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~----~~l~~~~~~gg~~~~~--~-~~~~~~~~~~TPg 87 (200)
+|++|++|.+|.. .+.. ...+++|+|+||||||.|+.+.++ .++++....|+++... . ..+.+++ ++||+
T Consensus 61 GSGKTla~~LPiL~~l~~-~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~Ii-vtTPd 138 (742)
T TIGR03817 61 ASGKSLAYQLPVLSALAD-DPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWAREHARYV-LTNPD 138 (742)
T ss_pred CCcHHHHHHHHHHHHHhh-CCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEE-EEChH
Confidence 4667777888873 3433 357899999999999999999998 3677777777765411 1 1233444 79999
Q ss_pred cee----------------eeeeeecCCCCChhhccccccchhhhhc----HHHHHhhCCCCcEE-EEEeeCchhHHHHH
Q psy13288 88 RIT----------------RHTFAMTPSVGPIVDRKFGQIFNGQILV----PKHVLRSLEPKTKV-SAIATFPLTVKNFM 146 (200)
Q Consensus 88 rl~----------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~----i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~ 146 (200)
++. .+++|+ ||||+|.+ .|..++.. +..+.++.+.+.|+ +||||++.... ++
T Consensus 139 ~L~~~~L~~~~~~~~~l~~l~~vVi-----DEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~ 211 (742)
T TIGR03817 139 MLHRGILPSHARWARFLRRLRYVVI-----DECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AA 211 (742)
T ss_pred HHHHhhccchhHHHHHHhcCCEEEE-----eChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HH
Confidence 874 234555 77799976 46666511 23333445678899 99999987754 67
Q ss_pred HHhCCCCeEEEeccccccccceEEEEEccc-----------------ccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 147 EKHLKDPYEINLMEELTLKGVTQYYAFVQE-----------------RQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 147 ~~~l~~~~~i~v~~~~~~~~i~q~~i~~~~-----------------~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
+.++.+|..+ +.....+...+++++..+. .+|...|..+++. ..++|||||
T Consensus 212 ~~l~g~~~~~-i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~ 279 (742)
T TIGR03817 212 SRLIGAPVVA-VTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVR 279 (742)
T ss_pred HHHcCCCeEE-ECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcC
Confidence 8888888654 3322222233333332222 2467777777764 579999997
No 42
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.63 E-value=5.6e-15 Score=137.70 Aligned_cols=156 Identities=12% Similarity=-0.009 Sum_probs=104.9
Q ss_pred cCCCCeeEEEEcCCHHHHHHHHHHhh--------cCCcEEEEeCCcccc--c-cCCCCceeeecccccee-----eeeee
Q psy13288 32 VQELSLRLVMCVIFREVLLKISSWEK--------VNLPLYVESQGTSKF--R-SFGKGDIFNAGSVSRIT-----RHTFA 95 (200)
Q Consensus 32 ~~~~~~~~lIl~PTRELa~Qi~~~~~--------~~l~~~~~~gg~~~~--~-~~~~~~~~~~~TPgrl~-----~~~~v 95 (200)
++....+++|++||||||.|+...+. .+..+.+.+||.... + .....++ .++|++... ..++|
T Consensus 218 ~~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~I-lv~T~~L~l~~L~~v~~VV 296 (675)
T PHA02653 218 PNFIERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGL-VFSTHKLTLNKLFDYGTVI 296 (675)
T ss_pred cccCCcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhhcccCCCCE-EEEeCcccccccccCCEEE
Confidence 34456799999999999999998876 245678889997631 1 1112233 368887422 34455
Q ss_pred ecCCCCChhhccccccchhhhhcHHHHHhhC-CCCcEE-EEEeeCchhHHHHHHHhCCCCeEEEeccccccccceEEEEE
Q psy13288 96 MTPSVGPIVDRKFGQIFNGQILVPKHVLRSL-EPKTKV-SAIATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAF 173 (200)
Q Consensus 96 ~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l-~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~q~~i~ 173 (200)
+ ||||++..++ +.+ ..+++.. ++.+|+ +||||+++++..+ ..++++|..+.+.. .+...|+|+|+.
T Consensus 297 I-----DEaHEr~~~~--Dll---L~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g-rt~~pV~~~yi~ 364 (675)
T PHA02653 297 I-----DEVHEHDQIG--DII---IAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG-GTLFPISEVYVK 364 (675)
T ss_pred c-----cccccCccch--hHH---HHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC-CcCCCeEEEEee
Confidence 5 6779987776 333 5666554 345699 9999999999887 57999999988753 345678999885
Q ss_pred cc----------cccHHHHHHHHHhh--CCCCeEEEEeC
Q psy13288 174 VQ----------ERQKVHCLNTLFSK--CCSLLGVFTCT 200 (200)
Q Consensus 174 ~~----------~~~K~~~L~~ll~~--~~~~k~iIF~n 200 (200)
.. +.+|...+..+.+. ...+++|||||
T Consensus 365 ~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlp 403 (675)
T PHA02653 365 NKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVA 403 (675)
T ss_pred cCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEEC
Confidence 43 12343344444332 23468999996
No 43
>KOG0349|consensus
Probab=99.62 E-value=5.9e-16 Score=135.07 Aligned_cols=135 Identities=17% Similarity=0.164 Sum_probs=105.7
Q ss_pred cCCCCeeEEEEcCCHHHHHHHHHHhh--------cCCcEEEEeCCccccc---cCCCCceeeecccccee----------
Q psy13288 32 VQELSLRLVMCVIFREVLLKISSWEK--------VNLPLYVESQGTSKFR---SFGKGDIFNAGSVSRIT---------- 90 (200)
Q Consensus 32 ~~~~~~~~lIl~PTRELa~Qi~~~~~--------~~l~~~~~~gg~~~~~---~~~~~~~~~~~TPgrl~---------- 90 (200)
+..|.|+++|+-|+||||.|+++.++ ..++..+++||.-... +....-.+.+|||||+.
T Consensus 282 ~~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~l 361 (725)
T KOG0349|consen 282 PAPNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTL 361 (725)
T ss_pred cCCCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceee
Confidence 44789999999999999999999555 5678888999876522 22233334479999998
Q ss_pred --eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCC------CcEE-EEEeeCc-hhHHHHHHHhCCCCeEEEec-
Q psy13288 91 --RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEP------KTKV-SAIATFP-LTVKNFMEKHLKDPYEINLM- 159 (200)
Q Consensus 91 --~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~------~~Q~-lfSAT~~-~~v~~~~~~~l~~~~~i~v~- 159 (200)
+.++|+ ||||.+|.+|+.+-| ..+.+++|+ ..|. ++|||+. -+|+.+.++.|+-|++++++
T Consensus 362 t~crFlvl-----Dead~lL~qgy~d~I---~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkg 433 (725)
T KOG0349|consen 362 THCRFLVL-----DEADLLLGQGYDDKI---YRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKG 433 (725)
T ss_pred eeeEEEEe-----cchhhhhhcccHHHH---HHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccc
Confidence 345555 677999999999998 888888763 4688 9999994 68999999999999999997
Q ss_pred cccccccceEEEEEc
Q psy13288 160 EELTLKGVTQYYAFV 174 (200)
Q Consensus 160 ~~~~~~~i~q~~i~~ 174 (200)
+...++++.|....+
T Consensus 434 eD~vpetvHhvv~lv 448 (725)
T KOG0349|consen 434 EDLVPETVHHVVKLV 448 (725)
T ss_pred ccccchhhccceeec
Confidence 666667777666544
No 44
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.58 E-value=6.2e-14 Score=133.38 Aligned_cols=168 Identities=12% Similarity=0.003 Sum_probs=110.5
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEEeCCccccccCCCCceeeeccccc
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK------VNLPLYVESQGTSKFRSFGKGDIFNAGSVSR 88 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgr 88 (200)
.|+|+|.++..|..+. .....+++|+.||||+|.|+.+.+. .+..+...++|.+... +...+.++|||+
T Consensus 29 TGSGKTt~~pl~lL~~--~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~~---~~t~I~v~T~G~ 103 (812)
T PRK11664 29 TGAGKSTWLPLQLLQH--GGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVG---PNTRLEVVTEGI 103 (812)
T ss_pred CCCCHHHHHHHHHHHc--CCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccccC---CCCcEEEEChhH
Confidence 3455555554444221 1223589999999999999999875 4556666677765411 222344799999
Q ss_pred eee-----------eeeeecCCCCChhhc-cccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCCeE
Q psy13288 89 ITR-----------HTFAMTPSVGPIVDR-KFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDPYE 155 (200)
Q Consensus 89 l~~-----------~~~v~d~~~~DEAD~-ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~ 155 (200)
+.. .++|+ ||||. +++.++.-.+ +.++.+.++++.|+ +||||++.+. ...|+.++..
T Consensus 104 Llr~l~~d~~L~~v~~IIl-----DEaHER~l~~Dl~L~l--l~~i~~~lr~~lqlilmSATl~~~~---l~~~~~~~~~ 173 (812)
T PRK11664 104 LTRMIQRDPELSGVGLVIL-----DEFHERSLQADLALAL--LLDVQQGLRDDLKLLIMSATLDNDR---LQQLLPDAPV 173 (812)
T ss_pred HHHHHhhCCCcCcCcEEEE-----cCCCccccccchHHHH--HHHHHHhCCccceEEEEecCCCHHH---HHHhcCCCCE
Confidence 982 34444 67785 6766543222 26677788889999 9999998652 3577887777
Q ss_pred EEeccccccccceEEEEEcccccHHH-----HHHHHHhhCCCCeEEEEeC
Q psy13288 156 INLMEELTLKGVTQYYAFVQERQKVH-----CLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 156 i~v~~~~~~~~i~q~~i~~~~~~K~~-----~L~~ll~~~~~~k~iIF~n 200 (200)
|.+... ...++++|+.++..+|.. .+..+++. ..+++|||||
T Consensus 174 I~~~gr--~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlp 220 (812)
T PRK11664 174 IVSEGR--SFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLP 220 (812)
T ss_pred EEecCc--cccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcC
Confidence 765422 124889999887766664 45555543 4689999996
No 45
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.57 E-value=8.8e-14 Score=132.29 Aligned_cols=150 Identities=13% Similarity=0.063 Sum_probs=102.9
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEEeCCccccccCCCCceeeeccccceee-----------eeeeec
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK------VNLPLYVESQGTSKFRSFGKGDIFNAGSVSRITR-----------HTFAMT 97 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~~-----------~~~v~d 97 (200)
...+++|+.||||+|.|+.+.+. .+..+...+++.+.. +....+.++|||+++. .++|+
T Consensus 44 ~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~~---s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIi- 119 (819)
T TIGR01970 44 IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENKV---SRRTRLEVVTEGILTRMIQDDPELDGVGALIF- 119 (819)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccccc---CCCCcEEEECCcHHHHHHhhCcccccCCEEEE-
Confidence 34699999999999999999875 344555555555431 1222344799999982 34444
Q ss_pred CCCCChhh-ccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCCeEEEeccccccccceEEEEEcc
Q psy13288 98 PSVGPIVD-RKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQ 175 (200)
Q Consensus 98 ~~~~DEAD-~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~q~~i~~~ 175 (200)
|||| ++++.+|.-.+ +.++.+.++++.|+ +||||++.+. ...|+.++..|.+... ...++++|..++
T Consensus 120 ----DEaHER~L~~Dl~L~l--l~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr--~~pVe~~y~~~~ 188 (819)
T TIGR01970 120 ----DEFHERSLDADLGLAL--ALDVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESEGR--SFPVEIRYLPLR 188 (819)
T ss_pred ----eccchhhhccchHHHH--HHHHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc--ceeeeeEEeecc
Confidence 7779 68887765433 25666777889999 9999999764 3678887766665422 124789998877
Q ss_pred cccHH-----HHHHHHHhhCCCCeEEEEeC
Q psy13288 176 ERQKV-----HCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 176 ~~~K~-----~~L~~ll~~~~~~k~iIF~n 200 (200)
..+|. ..+..+++. ..+++|||||
T Consensus 189 ~~~~~~~~v~~~l~~~l~~-~~g~iLVFlp 217 (819)
T TIGR01970 189 GDQRLEDAVSRAVEHALAS-ETGSILVFLP 217 (819)
T ss_pred hhhhHHHHHHHHHHHHHHh-cCCcEEEEEC
Confidence 65553 345555544 4689999996
No 46
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.57 E-value=4.3e-15 Score=118.82 Aligned_cols=136 Identities=23% Similarity=0.283 Sum_probs=103.4
Q ss_pred hhhcCccEEEecCcc-cccccC--CCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc---cCCCCcee
Q psy13288 13 ILKKSDFTLKISCPR-SQLTVQ--ELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR---SFGKGDIF 81 (200)
Q Consensus 13 ~l~~~~~~l~~~~p~-~~~~~~--~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~---~~~~~~~~ 81 (200)
+-.|+|+|+.+..|. ..+... .++++++|++||++|+.|+.+.++ .++++....||.+... .......+
T Consensus 43 ~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 122 (203)
T cd00268 43 AQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHI 122 (203)
T ss_pred CCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCE
Confidence 334566666666665 333333 478999999999999999998887 4788888888876421 12112223
Q ss_pred eecccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHH
Q psy13288 82 NAGSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEK 148 (200)
Q Consensus 82 ~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~ 148 (200)
.++||+++. ...+|+ ||||.+.+.+|...+ ..+.+.++++.|+ ++|||+++++.++++.
T Consensus 123 iv~T~~~l~~~l~~~~~~~~~l~~lIv-----DE~h~~~~~~~~~~~---~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~ 194 (203)
T cd00268 123 VVATPGRLLDLLERGKLDLSKVKYLVL-----DEADRMLDMGFEDQI---REILKLLPKDRQTLLFSATMPKEVRDLARK 194 (203)
T ss_pred EEEChHHHHHHHHcCCCChhhCCEEEE-----eChHHhhccChHHHH---HHHHHhCCcccEEEEEeccCCHHHHHHHHH
Confidence 379998876 233444 778999999999998 8899999989999 9999999999999999
Q ss_pred hCCCCeEE
Q psy13288 149 HLKDPYEI 156 (200)
Q Consensus 149 ~l~~~~~i 156 (200)
++++|+.|
T Consensus 195 ~~~~~~~~ 202 (203)
T cd00268 195 FLRNPVRI 202 (203)
T ss_pred HCCCCEEe
Confidence 99999886
No 47
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.50 E-value=2.3e-14 Score=124.37 Aligned_cols=176 Identities=13% Similarity=0.006 Sum_probs=108.8
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh--cCCcEEEEeCCccccc-------------------
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK--VNLPLYVESQGTSKFR------------------- 73 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~--~~l~~~~~~gg~~~~~------------------- 73 (200)
.|+|+|+++..|..+........++++++|||+|+.|+++.++ .+-++....|+.....
T Consensus 8 TGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (358)
T TIGR01587 8 TGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIH 87 (358)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHHHHHHHhh
Confidence 5788888887777443333456799999999999999999988 2434444444332100
Q ss_pred ---cCCCCceeeeccccceee------------------eeeeecCCCCChhhccccccchhhhhcHHHHHhhCC-CCcE
Q psy13288 74 ---SFGKGDIFNAGSVSRITR------------------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLE-PKTK 131 (200)
Q Consensus 74 ---~~~~~~~~~~~TPgrl~~------------------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~-~~~Q 131 (200)
.....++ .++||+++.. .++|+ ||||.+.+.++.. + ..+++.++ .+.|
T Consensus 88 ~~~~~~~~~I-~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iVi-----DE~h~~~~~~~~~-l---~~~l~~l~~~~~~ 157 (358)
T TIGR01587 88 SNDKLFLDPI-TVCTIDQVLKSVFGEFGHYEFTLASIANSLLIF-----DEVHFYDEYTLAL-I---LAVLEVLKDNDVP 157 (358)
T ss_pred chhhhhhCCe-eeCCHHHHHHHHhcccchHHHHHHHhcCCEEEE-----eCCCCCCHHHHHH-H---HHHHHHHHHcCCC
Confidence 0011223 3699988651 24555 6779999875544 4 55555554 4688
Q ss_pred E-EEEeeCchhHHHHHHHhCCCCeEEEeccccccccceEEEEEccc--ccHHHHHHHHHhhC-CCCeEEEEeC
Q psy13288 132 V-SAIATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQE--RQKVHCLNTLFSKC-CSLLGVFTCT 200 (200)
Q Consensus 132 ~-lfSAT~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~q~~i~~~~--~~K~~~L~~ll~~~-~~~k~iIF~n 200 (200)
+ ++|||+|+.+.+++..+...+.....+.........|.+..+.. ..|...+..+++.. ..+++|||||
T Consensus 158 ~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~ 230 (358)
T TIGR01587 158 ILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVN 230 (358)
T ss_pred EEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEEC
Confidence 9 99999998888887776544322211111111112444444332 35677777777654 4679999997
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.47 E-value=4.8e-13 Score=131.02 Aligned_cols=148 Identities=11% Similarity=-0.002 Sum_probs=102.9
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc--------CCCCceeeecccccee-------eeee
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS--------FGKGDIFNAGSVSRIT-------RHTF 94 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~--------~~~~~~~~~~TPgrl~-------~~~~ 94 (200)
++.|++||+||||||.|+++.++ .++++..+.|+.+...+ -+..+++ +|||+.+. ..++
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIV-VgTp~lL~~~v~~~~L~lL 726 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDIL-IGTHKLLQSDVKWKDLGLL 726 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEE-EECHHHHhCCCCHhhCCEE
Confidence 57899999999999999999997 35778778877653111 1234554 79997553 2334
Q ss_pred eecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCCeEEEeccccccccceEEEEE
Q psy13288 95 AMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAF 173 (200)
Q Consensus 95 v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~q~~i~ 173 (200)
|+ ||||++ |+. + ...++.++.+.|+ +||||.+..+..++...++++..|..... ....+++++..
T Consensus 727 VI-----DEahrf---G~~-~----~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~-~r~~v~~~~~~ 792 (1147)
T PRK10689 727 IV-----DEEHRF---GVR-H----KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA-RRLAVKTFVRE 792 (1147)
T ss_pred EE-----echhhc---chh-H----HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC-CCCCceEEEEe
Confidence 45 777997 433 2 3456778889999 99999988888999999999998876411 12346666655
Q ss_pred ccc-ccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 174 VQE-RQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 174 ~~~-~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
... ..|...+..+. ..++++||||
T Consensus 793 ~~~~~~k~~il~el~---r~gqv~vf~n 817 (1147)
T PRK10689 793 YDSLVVREAILREIL---RGGQVYYLYN 817 (1147)
T ss_pred cCcHHHHHHHHHHHh---cCCeEEEEEC
Confidence 443 23444455554 3579999997
No 49
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.47 E-value=1.5e-13 Score=136.21 Aligned_cols=134 Identities=14% Similarity=0.077 Sum_probs=91.8
Q ss_pred hcCccEEEecCcc-ccccc----------CCCCeeEEEEcCCHHHHHHHHHHhh-----------------cCCcEEEEe
Q psy13288 15 KKSDFTLKISCPR-SQLTV----------QELSLRLVMCVIFREVLLKISSWEK-----------------VNLPLYVES 66 (200)
Q Consensus 15 ~~~~~~l~~~~p~-~~~~~----------~~~~~~~lIl~PTRELa~Qi~~~~~-----------------~~l~~~~~~ 66 (200)
.+|+||+++.+|. +++.. ..+++++|+|+|||||+.|+++.++ .++++....
T Consensus 5 TGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrt 84 (1490)
T PRK09751 5 TGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRT 84 (1490)
T ss_pred CCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEE
Confidence 5788899888876 33321 1247899999999999999998764 257888889
Q ss_pred CCccccc---cC-CCCceeeecccccee-------------eeeeeecCCCCChhhccccccchhhhh-cHHHHHhhCCC
Q psy13288 67 QGTSKFR---SF-GKGDIFNAGSVSRIT-------------RHTFAMTPSVGPIVDRKFGQIFNGQIL-VPKHVLRSLEP 128 (200)
Q Consensus 67 gg~~~~~---~~-~~~~~~~~~TPgrl~-------------~~~~v~d~~~~DEAD~ll~~~f~~~i~-~i~~i~~~l~~ 128 (200)
|+++... .. ...+|+ ++||+++. ++++|+ ||+|.|++..+..++. .+.++...++.
T Consensus 85 GDt~~~eR~rll~~ppdIL-VTTPEsL~~LLtsk~r~~L~~Vr~VIV-----DE~H~L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 85 GDTPAQERSKLTRNPPDIL-ITTPESLYLMLTSRARETLRGVETVII-----DEVHAVAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred CCCCHHHHHHHhcCCCCEE-EecHHHHHHHHhhhhhhhhccCCEEEE-----ecHHHhcccccccHHHHHHHHHHHhCCC
Confidence 9887522 11 234555 89999986 234555 7779999864333221 12566566677
Q ss_pred CcEE-EEEeeCchhHHHHHHHhCC--CCeEE
Q psy13288 129 KTKV-SAIATFPLTVKNFMEKHLK--DPYEI 156 (200)
Q Consensus 129 ~~Q~-lfSAT~~~~v~~~~~~~l~--~~~~i 156 (200)
+.|+ .+|||++. ..++++ |+. +|..|
T Consensus 159 ~~QrIgLSATI~n-~eevA~-~L~g~~pv~I 187 (1490)
T PRK09751 159 SAQRIGLSATVRS-ASDVAA-FLGGDRPVTV 187 (1490)
T ss_pred CCeEEEEEeeCCC-HHHHHH-HhcCCCCEEE
Confidence 8999 99999976 456664 553 46555
No 50
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=4.5e-13 Score=120.79 Aligned_cols=178 Identities=13% Similarity=0.054 Sum_probs=110.6
Q ss_pred hHHhHhhhcC----------ccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCcccc----
Q psy13288 8 HSILLILKKS----------DFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSKF---- 72 (200)
Q Consensus 8 ~~i~~~l~~~----------~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~~---- 72 (200)
.+|+.+++++ |+|+.|..|... ....+||++|||||+.|..+.++ .++.+..+.|+....
T Consensus 18 ~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~-----~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~ 92 (470)
T TIGR00614 18 EVINAVLLGRDCFVVMPTGGGKSLCYQLPALC-----SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKN 92 (470)
T ss_pred HHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH-----cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 4556666554 445555555532 23469999999999999888888 788877777665431
Q ss_pred --ccC--CCCceeeeccccceee--------------eeeeecCCCCChhhcccccc--chhhhhcHHHHHhhCCCCcEE
Q psy13288 73 --RSF--GKGDIFNAGSVSRITR--------------HTFAMTPSVGPIVDRKFGQI--FNGQILVPKHVLRSLEPKTKV 132 (200)
Q Consensus 73 --~~~--~~~~~~~~~TPgrl~~--------------~~~v~d~~~~DEAD~ll~~~--f~~~i~~i~~i~~~l~~~~Q~ 132 (200)
... ++.+++ ++||+++.. .++|+ ||||++.+.| |.++...+..+.+.+| +.|+
T Consensus 93 i~~~~~~~~~~il-~~TPe~l~~~~~~~~~l~~~~~i~~iVi-----DEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~ 165 (470)
T TIGR00614 93 VLTDLKDGKIKLL-YVTPEKCSASNRLLQTLEERKGITLIAV-----DEAHCISQWGHDFRPDYKALGSLKQKFP-NVPI 165 (470)
T ss_pred HHHHHhcCCCCEE-EECHHHHcCchhHHHHHHhcCCcCEEEE-----eCCcccCccccccHHHHHHHHHHHHHcC-CCce
Confidence 011 122333 599998762 23344 7789998754 7787745555666665 6778
Q ss_pred -EEEeeCchhHHHHHHHhC--CCCeEEEeccccccccceEEEEEcccccHHHHHHHHHhhC-CCCeEEEEeC
Q psy13288 133 -SAIATFPLTVKNFMEKHL--KDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKC-CSLLGVFTCT 200 (200)
Q Consensus 133 -lfSAT~~~~v~~~~~~~l--~~~~~i~v~~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~-~~~k~iIF~n 200 (200)
++|||.+..+...+...+ .+|..+... ...+++. +.+.-...++...+..++.+. ...++|||||
T Consensus 166 l~lTAT~~~~~~~di~~~l~l~~~~~~~~s--~~r~nl~-~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~ 234 (470)
T TIGR00614 166 MALTATASPSVREDILRQLNLKNPQIFCTS--FDRPNLY-YEVRRKTPKILEDLLRFIRKEFKGKSGIIYCP 234 (470)
T ss_pred EEEecCCCHHHHHHHHHHcCCCCCcEEeCC--CCCCCcE-EEEEeCCccHHHHHHHHHHHhcCCCceEEEEC
Confidence 999999999887666554 466655433 1122332 222212224566677777633 4456699996
No 51
>PRK02362 ski2-like helicase; Provisional
Probab=99.42 E-value=2.5e-13 Score=128.52 Aligned_cols=117 Identities=15% Similarity=0.074 Sum_probs=82.5
Q ss_pred hcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh----cCCcEEEEeCCcccccc-CCCCceeeeccccc
Q psy13288 15 KKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK----VNLPLYVESQGTSKFRS-FGKGDIFNAGSVSR 88 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~----~~l~~~~~~gg~~~~~~-~~~~~~~~~~TPgr 88 (200)
.++|+|+.+..|.. .+. ++.++|+++||||||.|.++.++ .++++....|+...... .+..+++ ++||+|
T Consensus 48 TGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~~l~~~~Ii-V~Tpek 123 (737)
T PRK02362 48 TASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDEWLGDNDII-VATSEK 123 (737)
T ss_pred CcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCccccccCCCCEE-EECHHH
Confidence 44566665555542 232 35689999999999999999988 37889888888765222 3345555 799998
Q ss_pred ee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCch
Q psy13288 89 IT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPL 140 (200)
Q Consensus 89 l~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~ 140 (200)
+. +.++|+ ||||.+.+.++...+..+-.-+++.+++.|+ .+|||++.
T Consensus 124 ~~~llr~~~~~l~~v~lvVi-----DE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n 183 (737)
T PRK02362 124 VDSLLRNGAPWLDDITCVVV-----DEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN 183 (737)
T ss_pred HHHHHhcChhhhhhcCEEEE-----ECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC
Confidence 74 344555 6779999988888873323334445678899 99999963
No 52
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.41 E-value=1.2e-12 Score=125.96 Aligned_cols=166 Identities=13% Similarity=-0.031 Sum_probs=105.3
Q ss_pred cCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccc------cc--CCCCceee
Q psy13288 16 KSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKF------RS--FGKGDIFN 82 (200)
Q Consensus 16 ~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~------~~--~~~~~~~~ 82 (200)
|+|+|+.+..|.-+.- .++.|++|++||+|||.|+++.++ .++++..+.|+.+.. .. -++.+++
T Consensus 482 GsGKT~val~a~l~al--~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIV- 558 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAV--LDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDIL- 558 (926)
T ss_pred CccHHHHHHHHHHHHH--HhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEE-
Confidence 5777777766653321 245799999999999999999988 467888888876521 01 1234554
Q ss_pred ecccccee-------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCCe
Q psy13288 83 AGSVSRIT-------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDPY 154 (200)
Q Consensus 83 ~~TPgrl~-------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~ 154 (200)
+|||.-+. ..++|+ ||||++ . ... ...++.++++.|+ +||||.+.....++...+.++.
T Consensus 559 IGTp~ll~~~v~f~~L~llVI-----DEahrf-g----v~~---~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s 625 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLII-----DEEQRF-G----VKQ---KEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLS 625 (926)
T ss_pred EchHHHhhCCCCcccCCEEEe-----eccccc-c----hhH---HHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcE
Confidence 79994332 234444 777984 2 222 4556677788999 9999987777777777778888
Q ss_pred EEEeccccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 155 EINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 155 ~i~v~~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
.|..... ....+++++...+...-...+..-+. ..++++||||
T Consensus 626 ~I~~~p~-~R~~V~t~v~~~~~~~i~~~i~~el~--~g~qv~if~n 668 (926)
T TIGR00580 626 IIATPPE-DRLPVRTFVMEYDPELVREAIRRELL--RGGQVFYVHN 668 (926)
T ss_pred EEecCCC-CccceEEEEEecCHHHHHHHHHHHHH--cCCeEEEEEC
Confidence 8765411 11246666654332211122222222 4579999997
No 53
>PRK00254 ski2-like helicase; Provisional
Probab=99.41 E-value=5.2e-13 Score=126.06 Aligned_cols=125 Identities=14% Similarity=0.064 Sum_probs=90.4
Q ss_pred hcCccEEEecCcccc-cccCCCCeeEEEEcCCHHHHHHHHHHhh----cCCcEEEEeCCcccccc-CCCCceeeeccccc
Q psy13288 15 KKSDFTLKISCPRSQ-LTVQELSLRLVMCVIFREVLLKISSWEK----VNLPLYVESQGTSKFRS-FGKGDIFNAGSVSR 88 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~-~~~~~~~~~~lIl~PTRELa~Qi~~~~~----~~l~~~~~~gg~~~~~~-~~~~~~~~~~TPgr 88 (200)
.++|+|+.+..|..+ +. .++.++|+|+|||+||.|.++.++ .++++....|+.+.... .+..+++ ++||++
T Consensus 48 TGsGKT~~~~l~il~~l~--~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~~~~~~Ii-V~Tpe~ 124 (720)
T PRK00254 48 TASGKTLVAEIVMVNKLL--REGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDEWLGKYDII-IATAEK 124 (720)
T ss_pred CCcHHHHHHHHHHHHHHH--hcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchhhhccCCEE-EEcHHH
Confidence 445555555555522 22 235699999999999999998887 57888888888764221 2344554 799998
Q ss_pred ee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCC
Q psy13288 89 IT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKD 152 (200)
Q Consensus 89 l~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~ 152 (200)
+. +.++|+ ||+|.+.+.++...+ ..++.+++.+.|+ ++|||++. ..++++ |+..
T Consensus 125 ~~~ll~~~~~~l~~l~lvVi-----DE~H~l~~~~rg~~l---e~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~ 191 (720)
T PRK00254 125 FDSLLRHGSSWIKDVKLVVA-----DEIHLIGSYDRGATL---EMILTHMLGRAQILGLSATVGN-AEELAE-WLNA 191 (720)
T ss_pred HHHHHhCCchhhhcCCEEEE-----cCcCccCCccchHHH---HHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCC
Confidence 75 244455 677999998888887 8899999889999 99999974 455554 5553
No 54
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.40 E-value=1e-12 Score=126.78 Aligned_cols=182 Identities=12% Similarity=0.089 Sum_probs=113.7
Q ss_pred hHHhHhhhcC----------ccEEEecCcccccccCCCCeeEEEEcCCHHHHH-HHHHHhhcCCcEEEEeCCccccc---
Q psy13288 8 HSILLILKKS----------DFTLKISCPRSQLTVQELSLRLVMCVIFREVLL-KISSWEKVNLPLYVESQGTSKFR--- 73 (200)
Q Consensus 8 ~~i~~~l~~~----------~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~-Qi~~~~~~~l~~~~~~gg~~~~~--- 73 (200)
.+|+.+|.++ |+++.|.+|.... ...+|||+|++||+. |+.+....+++...+.||.....
T Consensus 467 eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ 541 (1195)
T PLN03137 467 EIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLE 541 (1195)
T ss_pred HHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHH
Confidence 4566666554 5555566776332 246999999999997 77777778899988888875411
Q ss_pred ---cC----CCCceeeeccccceeee-----ee-------eecCCCCChhhcccccc--chhhhhcHHHHHhhCCCCcEE
Q psy13288 74 ---SF----GKGDIFNAGSVSRITRH-----TF-------AMTPSVGPIVDRKFGQI--FNGQILVPKHVLRSLEPKTKV 132 (200)
Q Consensus 74 ---~~----~~~~~~~~~TPgrl~~~-----~~-------v~d~~~~DEAD~ll~~~--f~~~i~~i~~i~~~l~~~~Q~ 132 (200)
.. +..+++ ++||+|+... .+ .+...+.||||++++.| |.++...+..+.+.+| +.|+
T Consensus 542 ilr~l~s~~g~~~IL-yvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp-~vPi 619 (1195)
T PLN03137 542 ILQELSSEYSKYKLL-YVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-NIPV 619 (1195)
T ss_pred HHHHHHhcCCCCCEE-EEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCC-CCCe
Confidence 11 223333 6999998521 00 01222448889999865 8888733344445554 6788
Q ss_pred -EEEeeCchhHHHHHHHhCC--CCeEEEeccccccccceEEEEEcccccH-HHHHHHHHhhC-CCCeEEEEeC
Q psy13288 133 -SAIATFPLTVKNFMEKHLK--DPYEINLMEELTLKGVTQYYAFVQERQK-VHCLNTLFSKC-CSLLGVFTCT 200 (200)
Q Consensus 133 -lfSAT~~~~v~~~~~~~l~--~~~~i~v~~~~~~~~i~q~~i~~~~~~K-~~~L~~ll~~~-~~~k~iIF~n 200 (200)
++|||.+..+++.+...+. ++..+... ...+++ +|..++...+ ...+..+++.. ...++||||+
T Consensus 620 lALTATAT~~V~eDI~~~L~l~~~~vfr~S--f~RpNL--~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~ 688 (1195)
T PLN03137 620 LALTATATASVKEDVVQALGLVNCVVFRQS--FNRPNL--WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCL 688 (1195)
T ss_pred EEEEecCCHHHHHHHHHHcCCCCcEEeecc--cCccce--EEEEeccchhHHHHHHHHHHhcccCCCceeEeC
Confidence 9999999999986665554 44443322 222333 4444444433 45666666543 3568999996
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.37 E-value=2.3e-12 Score=120.99 Aligned_cols=172 Identities=14% Similarity=0.020 Sum_probs=101.1
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc------c--CCCCcee
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR------S--FGKGDIF 81 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~------~--~~~~~~~ 81 (200)
.|+|+|+.+..|..+.- .++.|++|++||||||.|+++.++ .++++.++.||.+... . .+..+++
T Consensus 291 TGSGKT~va~~~il~~~--~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~Iv 368 (681)
T PRK10917 291 VGSGKTVVAALAALAAI--EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIV 368 (681)
T ss_pred CCCcHHHHHHHHHHHHH--HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEE
Confidence 46888888888874432 357899999999999999999988 4799999999986310 1 1234544
Q ss_pred eeccccceeee--eeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCCeEEEe
Q psy13288 82 NAGSVSRITRH--TFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDPYEINL 158 (200)
Q Consensus 82 ~~~TPgrl~~~--~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v 158 (200)
+|||+++... +.-+.-.+.||||++ ... + ...+...+.+.|+ ++|||.......+......++..+..
T Consensus 369 -VgT~~ll~~~v~~~~l~lvVIDE~Hrf-g~~---q----r~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~ 439 (681)
T PRK10917 369 -IGTHALIQDDVEFHNLGLVIIDEQHRF-GVE---Q----RLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDE 439 (681)
T ss_pred -EchHHHhcccchhcccceEEEechhhh-hHH---H----HHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEec
Confidence 7999998622 111112223778986 211 1 2333344556889 99999765544433321223333321
Q ss_pred ccccccccceEEEEEcccccHH-HHHHHHHhhCCCCeEEEEeC
Q psy13288 159 MEELTLKGVTQYYAFVQERQKV-HCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 159 ~~~~~~~~i~q~~i~~~~~~K~-~~L~~ll~~~~~~k~iIF~n 200 (200)
. ......++++++..+..++. ..+...+. ...+++|||+
T Consensus 440 ~-p~~r~~i~~~~~~~~~~~~~~~~i~~~~~--~g~q~~v~~~ 479 (681)
T PRK10917 440 L-PPGRKPITTVVIPDSRRDEVYERIREEIA--KGRQAYVVCP 479 (681)
T ss_pred C-CCCCCCcEEEEeCcccHHHHHHHHHHHHH--cCCcEEEEEc
Confidence 1 11122366665543332222 22323222 4569999995
No 56
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.35 E-value=2.6e-12 Score=119.21 Aligned_cols=170 Identities=11% Similarity=0.042 Sum_probs=109.9
Q ss_pred cCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccccc------cCCCCce-eeecccc
Q psy13288 16 KSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSKFR------SFGKGDI-FNAGSVS 87 (200)
Q Consensus 16 ~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~~~------~~~~~~~-~~~~TPg 87 (200)
|+|+|+.|..|.... ...+||++||+||+.|..+.++ .++......++.+... .....+. +.++||+
T Consensus 50 GsGKTl~y~lpal~~-----~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe 124 (607)
T PRK11057 50 GGGKSLCYQIPALVL-----DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPE 124 (607)
T ss_pred CchHHHHHHHHHHHc-----CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChH
Confidence 345555556665321 2368999999999999888888 7787777666544310 0111111 2259999
Q ss_pred ceee------------eeeeecCCCCChhhccccc--cchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHh--C
Q psy13288 88 RITR------------HTFAMTPSVGPIVDRKFGQ--IFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKH--L 150 (200)
Q Consensus 88 rl~~------------~~~v~d~~~~DEAD~ll~~--~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~--l 150 (200)
|+.. .++|+ ||||++.+. +|.+++..+..+.+.+| +.|+ ++|||.+..++..+... +
T Consensus 125 ~l~~~~~~~~l~~~~l~~iVI-----DEaH~i~~~G~~fr~~y~~L~~l~~~~p-~~~~v~lTAT~~~~~~~di~~~l~l 198 (607)
T PRK11057 125 RLMMDNFLEHLAHWNPALLAV-----DEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGL 198 (607)
T ss_pred HhcChHHHHHHhhCCCCEEEE-----eCccccccccCcccHHHHHHHHHHHhCC-CCcEEEEecCCChhHHHHHHHHhCC
Confidence 9872 34555 777999875 48877755566666665 6788 99999999887644443 4
Q ss_pred CCCeEEEeccccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 151 KDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 151 ~~~~~i~v~~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
.+|...... ...+++ +|..++...+...|..++......++|||||
T Consensus 199 ~~~~~~~~~--~~r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~ 244 (607)
T PRK11057 199 NDPLIQISS--FDRPNI--RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCN 244 (607)
T ss_pred CCeEEEECC--CCCCcc--eeeeeeccchHHHHHHHHHhcCCCCEEEEEC
Confidence 566544322 112233 3444555567777888877777789999997
No 57
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.30 E-value=3.2e-12 Score=122.99 Aligned_cols=120 Identities=10% Similarity=-0.030 Sum_probs=78.2
Q ss_pred hcCccEEEecCccc-cccc------CCCCeeEEEEcCCHHHHHHHHHHhh-----------------cCCcEEEEeCCcc
Q psy13288 15 KKSDFTLKISCPRS-QLTV------QELSLRLVMCVIFREVLLKISSWEK-----------------VNLPLYVESQGTS 70 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~~~------~~~~~~~lIl~PTRELa~Qi~~~~~-----------------~~l~~~~~~gg~~ 70 (200)
.|+|+|+++..|.. .+.. ..+++++|+++||||||.|+++.+. .++++....|+++
T Consensus 56 TGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~ 135 (876)
T PRK13767 56 TGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTS 135 (876)
T ss_pred CCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCC
Confidence 45667776776652 2211 1457899999999999999986432 1667888888876
Q ss_pred ccc---cCC-CCceeeecccccee--------------eeeeeecCCCCChhhccccccchhhhhc-HHHHHhhCCCCcE
Q psy13288 71 KFR---SFG-KGDIFNAGSVSRIT--------------RHTFAMTPSVGPIVDRKFGQIFNGQILV-PKHVLRSLEPKTK 131 (200)
Q Consensus 71 ~~~---~~~-~~~~~~~~TPgrl~--------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~-i~~i~~~l~~~~Q 131 (200)
... ... ..+++ ++||+++. ++++|+ ||||.+++..+...+.. +..+....+.+.|
T Consensus 136 ~~~r~~~l~~~p~Il-VtTPE~L~~ll~~~~~~~~l~~l~~VVI-----DE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q 209 (876)
T PRK13767 136 SYEKQKMLKKPPHIL-ITTPESLAILLNSPKFREKLRTVKWVIV-----DEIHSLAENKRGVHLSLSLERLEELAGGEFV 209 (876)
T ss_pred HHHHHHHHhCCCCEE-EecHHHHHHHhcChhHHHHHhcCCEEEE-----echhhhccCccHHHHHHHHHHHHHhcCCCCe
Confidence 421 111 23444 79999985 244555 77799998766554411 1333333446789
Q ss_pred E-EEEeeCch
Q psy13288 132 V-SAIATFPL 140 (200)
Q Consensus 132 ~-lfSAT~~~ 140 (200)
. .+|||++.
T Consensus 210 ~IglSATl~~ 219 (876)
T PRK13767 210 RIGLSATIEP 219 (876)
T ss_pred EEEEecccCC
Confidence 9 99999964
No 58
>PRK01172 ski2-like helicase; Provisional
Probab=99.28 E-value=4.1e-12 Score=119.19 Aligned_cols=108 Identities=8% Similarity=0.046 Sum_probs=77.2
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh----cCCcEEEEeCCcccccc-CCCCceeeecccccee------------eeeeeecC
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK----VNLPLYVESQGTSKFRS-FGKGDIFNAGSVSRIT------------RHTFAMTP 98 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~----~~l~~~~~~gg~~~~~~-~~~~~~~~~~TPgrl~------------~~~~v~d~ 98 (200)
+.++|+++|||+||.|+++.++ .+.++...+|+...... .+..+++ ++||+|+. ..++|+
T Consensus 65 ~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~dIi-v~Tpek~~~l~~~~~~~l~~v~lvVi-- 141 (674)
T PRK01172 65 GLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPDFIKRYDVV-ILTSEKADSLIHHDPYIINDVGLIVA-- 141 (674)
T ss_pred CCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChhhhccCCEE-EECHHHHHHHHhCChhHHhhcCEEEE--
Confidence 4689999999999999999887 57888888887654222 2334554 79999864 244555
Q ss_pred CCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCC
Q psy13288 99 SVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLK 151 (200)
Q Consensus 99 ~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~ 151 (200)
||||++.+.++...+..+...++.++++.|+ ++|||++. ..++++ |+.
T Consensus 142 ---DEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~ 190 (674)
T PRK01172 142 ---DEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLN 190 (674)
T ss_pred ---ecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhC
Confidence 6779999888887773334444556678899 99999964 455554 443
No 59
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.26 E-value=5.3e-11 Score=110.15 Aligned_cols=152 Identities=11% Similarity=0.050 Sum_probs=104.2
Q ss_pred eEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCcccc------ccC--CCCceeeecccccee------------eeeeee
Q psy13288 38 RLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSKF------RSF--GKGDIFNAGSVSRIT------------RHTFAM 96 (200)
Q Consensus 38 ~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~~------~~~--~~~~~~~~~TPgrl~------------~~~~v~ 96 (200)
.++|++|+++|+.|..+.++ .++.+..+.++.+.. +.. +..++. ++||.|+. ..++|+
T Consensus 55 ~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il-~~tpe~l~~~~~~~~l~~~~l~~iVi 133 (591)
T TIGR01389 55 LTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLL-YVAPERLEQDYFLNMLQRIPIALVAV 133 (591)
T ss_pred cEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEE-EEChhHhcChHHHHHHhcCCCCEEEE
Confidence 58999999999998888887 788877776665431 001 122222 59999986 244555
Q ss_pred cCCCCChhhcccc--ccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCC--CCeEEEeccccccccceEEE
Q psy13288 97 TPSVGPIVDRKFG--QIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLK--DPYEINLMEELTLKGVTQYY 171 (200)
Q Consensus 97 d~~~~DEAD~ll~--~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~--~~~~i~v~~~~~~~~i~q~~ 171 (200)
||||.+.+ .+|.+++..+..+.+.+|.. ++ ++|||.+..+..-+...+. ++..+... ...+++ +|
T Consensus 134 -----DEaH~i~~~g~~frp~y~~l~~l~~~~~~~-~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~--~~r~nl--~~ 203 (591)
T TIGR01389 134 -----DEAHCVSQWGHDFRPEYQRLGSLAERFPQV-PRIALTATADAETRQDIRELLRLADANEFITS--FDRPNL--RF 203 (591)
T ss_pred -----eCCcccccccCccHHHHHHHHHHHHhCCCC-CEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC--CCCCCc--EE
Confidence 67799987 45888876666777777644 48 9999999999887776664 44443211 112222 34
Q ss_pred EEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 172 AFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 172 i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
...+..+|...+..++......++|||||
T Consensus 204 ~v~~~~~~~~~l~~~l~~~~~~~~IIf~~ 232 (591)
T TIGR01389 204 SVVKKNNKQKFLLDYLKKHRGQSGIIYAS 232 (591)
T ss_pred EEEeCCCHHHHHHHHHHhcCCCCEEEEEC
Confidence 44456678888888888766789999997
No 60
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.24 E-value=5.7e-12 Score=97.31 Aligned_cols=124 Identities=18% Similarity=0.193 Sum_probs=88.7
Q ss_pred HhhhcCccEEEecCcccc-cccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc----cC-CCCce
Q psy13288 12 LILKKSDFTLKISCPRSQ-LTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR----SF-GKGDI 80 (200)
Q Consensus 12 ~~l~~~~~~l~~~~p~~~-~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~----~~-~~~~~ 80 (200)
.+-.|+|+|..+..|..+ +... +..++++++||++|+.|..+.+. .++++..+.||.+... .. +..++
T Consensus 20 ~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 98 (169)
T PF00270_consen 20 SAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADI 98 (169)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSE
T ss_pred ECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 344556666666666643 3333 45699999999999999999988 4678999999876420 11 23455
Q ss_pred eeecccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCC--CCcEE-EEEeeCchhHHHH
Q psy13288 81 FNAGSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLE--PKTKV-SAIATFPLTVKNF 145 (200)
Q Consensus 81 ~~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~--~~~Q~-lfSAT~~~~v~~~ 145 (200)
. ++||+++. ..++|+ ||+|.+.+.++.+.+ ..+++.+. ++.|+ ++|||++++++++
T Consensus 99 l-v~T~~~l~~~~~~~~~~~~~~~~iVi-----DE~h~l~~~~~~~~~---~~i~~~~~~~~~~~~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 99 L-VTTPEQLLDLISNGKINISRLSLIVI-----DEAHHLSDETFRAML---KSILRRLKRFKNIQIILLSATLPSNVEKL 169 (169)
T ss_dssp E-EEEHHHHHHHHHTTSSTGTTESEEEE-----ETHHHHHHTTHHHHH---HHHHHHSHTTTTSEEEEEESSSTHHHHHH
T ss_pred c-ccCcchhhccccccccccccceeecc-----CcccccccccHHHHH---HHHHHHhcCCCCCcEEEEeeCCChhHhhC
Confidence 4 79999887 233344 778999998888887 77777762 35889 9999999777653
No 61
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.21 E-value=3.3e-11 Score=112.38 Aligned_cols=168 Identities=11% Similarity=-0.066 Sum_probs=95.8
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc------c--CCCCcee
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR------S--FGKGDIF 81 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~------~--~~~~~~~ 81 (200)
.|+|+|+.+..|....- .++.|+++++||+|||.|+++.++ .++++.++.||.+... . .+..+++
T Consensus 265 TGSGKT~va~l~il~~~--~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~Ii 342 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAI--EAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLV 342 (630)
T ss_pred CCCcHHHHHHHHHHHHH--HcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEE
Confidence 46888888877764322 246799999999999999999988 4799999999976411 1 1233544
Q ss_pred eecccccee-------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCC--CCcEE-EEEeeCchhHHHHHHHhCC
Q psy13288 82 NAGSVSRIT-------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLE--PKTKV-SAIATFPLTVKNFMEKHLK 151 (200)
Q Consensus 82 ~~~TPgrl~-------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~--~~~Q~-lfSAT~~~~v~~~~~~~l~ 151 (200)
+|||+++. ..++|+ ||||++- .. +- ..+....+ .+.|+ ++|||.......+....--
T Consensus 343 -VgT~~ll~~~~~~~~l~lvVI-----DEaH~fg---~~-qr---~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l 409 (630)
T TIGR00643 343 -VGTHALIQEKVEFKRLALVII-----DEQHRFG---VE-QR---KKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDL 409 (630)
T ss_pred -EecHHHHhccccccccceEEE-----echhhcc---HH-HH---HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCc
Confidence 79999987 233444 7779852 11 11 23333333 26788 9999965443332211111
Q ss_pred CCeEEEeccccccccceEEEEEcccccHHHHHHHHHhhC-CCCeEEEEeC
Q psy13288 152 DPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKC-CSLLGVFTCT 200 (200)
Q Consensus 152 ~~~~i~v~~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~-~~~k~iIF~n 200 (200)
+...+.. .......+.++++. ..++...+..+.+.. ...+++|||+
T Consensus 410 ~~~~i~~-~p~~r~~i~~~~~~--~~~~~~~~~~i~~~l~~g~q~~v~~~ 456 (630)
T TIGR00643 410 DTSIIDE-LPPGRKPITTVLIK--HDEKDIVYEFIEEEIAKGRQAYVVYP 456 (630)
T ss_pred ceeeecc-CCCCCCceEEEEeC--cchHHHHHHHHHHHHHhCCcEEEEEc
Confidence 2222211 11111234554443 333322332332222 4568999985
No 62
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.16 E-value=6.4e-10 Score=109.32 Aligned_cols=180 Identities=13% Similarity=0.065 Sum_probs=104.6
Q ss_pred chhhHHhHhhhcCccEEEecCccc-------cc-ccCCCCeeEEEE--cC----CHHHHHHHHHHhh--cCCcEEEEeCC
Q psy13288 5 SFEHSILLILKKSDFTLKISCPRS-------QL-TVQELSLRLVMC--VI----FREVLLKISSWEK--VNLPLYVESQG 68 (200)
Q Consensus 5 ~~~~~i~~~l~~~~~~l~~~~p~~-------~~-~~~~~~~~~lIl--~P----TRELa~Qi~~~~~--~~l~~~~~~gg 68 (200)
.+...|+.++++.+.++-...+.+ ++ .....+..+.|+ -| +||||.||.+++. .+-.+..-+..
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vrf 156 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRF 156 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeecC
Confidence 345567777776666655433332 11 111122223333 24 7899999999998 33333222222
Q ss_pred ccccccCCCCceeeecccccee-----------eeeeeecCCCCChhh-ccccccchhhhhcHHHHHhhCCCCcEE-EEE
Q psy13288 69 TSKFRSFGKGDIFNAGSVSRIT-----------RHTFAMTPSVGPIVD-RKFGQIFNGQILVPKHVLRSLEPKTKV-SAI 135 (200)
Q Consensus 69 ~~~~~~~~~~~~~~~~TPgrl~-----------~~~~v~d~~~~DEAD-~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfS 135 (200)
.+ ..+..-.+.++|||+++ ..++|+ |||| ++++.+|...+ +..++..- ++.|+ +||
T Consensus 157 ~~---~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~III-----DEAHERsLn~DfLLg~--Lk~lL~~r-pdlKvILmS 225 (1294)
T PRK11131 157 ND---QVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIII-----DEAHERSLNIDFILGY--LKELLPRR-PDLKVIITS 225 (1294)
T ss_pred cc---ccCCCCCEEEEChHHHHHHHhcCCccccCcEEEe-----cCccccccccchHHHH--HHHhhhcC-CCceEEEee
Confidence 21 12233344589999998 234444 7779 79999987543 36665443 36799 999
Q ss_pred eeCchhHHHHHHHhCCCCeEEEeccccccccceEEEEEccccc---HHHHHHHHHh------hCCCCeEEEEeC
Q psy13288 136 ATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQ---KVHCLNTLFS------KCCSLLGVFTCT 200 (200)
Q Consensus 136 AT~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~q~~i~~~~~~---K~~~L~~ll~------~~~~~k~iIF~n 200 (200)
||++. ..+++.|.+.|+ +.+.... ..++++|..+...+ +.+.+..++. ....+++|||||
T Consensus 226 ATid~--e~fs~~F~~apv-I~V~Gr~--~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLp 294 (1294)
T PRK11131 226 ATIDP--ERFSRHFNNAPI-IEVSGRT--YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMS 294 (1294)
T ss_pred CCCCH--HHHHHHcCCCCE-EEEcCcc--ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 99974 467776666663 5554221 24788888765322 3344443332 235688999996
No 63
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=7.7e-10 Score=102.75 Aligned_cols=67 Identities=6% Similarity=-0.136 Sum_probs=52.7
Q ss_pred EEEeeCchhHHHHHHHhCCCCeEEEeccccccccceEEEEEcccccHHHHHHHHHhhC--CCCeEEEEeC
Q psy13288 133 SAIATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKC--CSLLGVFTCT 200 (200)
Q Consensus 133 lfSAT~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~--~~~k~iIF~n 200 (200)
-||||.+....++.+.|.-+++.|-... .......+.+++++..+|..+|..+++.. ...++|||||
T Consensus 413 GmTGTa~~~~~El~~~y~l~vv~IPt~k-p~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~ 481 (656)
T PRK12898 413 GMTGTAREVAGELWSVYGLPVVRIPTNR-PSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTR 481 (656)
T ss_pred cccCcChHHHHHHHHHHCCCeEEeCCCC-CccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4899999988899999988877765432 22344667788899999999999999864 3568999996
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.98 E-value=1.1e-08 Score=93.21 Aligned_cols=96 Identities=7% Similarity=-0.023 Sum_probs=65.0
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccccCCCCceeeeccccceeeee----eeecCCCCChhh
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRSFGKGDIFNAGSVSRITRHT----FAMTPSVGPIVD 105 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~~~~----~v~d~~~~DEAD 105 (200)
...++|||+||+||+.|+.+.++ ....+..+.||.... ...++. ++||+++.... .-++-.+.||||
T Consensus 157 ~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~---~~~~I~-VaT~qsl~~~~~~~~~~~~~iIvDEaH 232 (501)
T PHA02558 157 YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD---TDAPIV-VSTWQSAVKQPKEWFDQFGMVIVDECH 232 (501)
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC---CCCCEE-EeeHHHHhhchhhhccccCEEEEEchh
Confidence 34599999999999999999988 223455666776541 123443 79999986321 011112227889
Q ss_pred ccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchh
Q psy13288 106 RKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLT 141 (200)
Q Consensus 106 ~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~ 141 (200)
++.+.+ + ..+++.+++.+|+ .||||.+..
T Consensus 233 ~~~~~~----~---~~il~~~~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 233 LFTGKS----L---TSIITKLDNCKFKFGLTGSLRDG 262 (501)
T ss_pred cccchh----H---HHHHHhhhccceEEEEeccCCCc
Confidence 998643 3 6677778777899 999998653
No 65
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.94 E-value=3.3e-10 Score=107.74 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=56.9
Q ss_pred HhhhcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc--CCCCceeee
Q psy13288 12 LILKKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS--FGKGDIFNA 83 (200)
Q Consensus 12 ~~l~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~--~~~~~~~~~ 83 (200)
.+-.|+|+|+++.+|.. ++... -.++||+||||||.|+.+++. .++++.+++||.+..++ ....++. +
T Consensus 113 eaqTGeGKTLAf~LP~l~~aL~g---~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIV-y 188 (970)
T PRK12899 113 EMQTGEGKTLTAVMPLYLNALTG---KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVV-Y 188 (970)
T ss_pred EeCCCCChHHHHHHHHHHHHhhc---CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHcCCCEE-E
Confidence 34467999999999984 33222 148999999999999999998 68999999999886332 1134554 7
Q ss_pred ccccce
Q psy13288 84 GSVSRI 89 (200)
Q Consensus 84 ~TPgrl 89 (200)
|||||+
T Consensus 189 gTPgRL 194 (970)
T PRK12899 189 GTASEF 194 (970)
T ss_pred ECCChh
Confidence 999999
No 66
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.82 E-value=9.8e-09 Score=96.60 Aligned_cols=123 Identities=14% Similarity=-0.032 Sum_probs=76.1
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh--cCCcEEEEeCCcccc------cc--CCCCceeeec
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK--VNLPLYVESQGTSKF------RS--FGKGDIFNAG 84 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~--~~l~~~~~~gg~~~~------~~--~~~~~~~~~~ 84 (200)
.|+|+|..+..+..+.-. .+.++||++||++|+.|+.+.++ .+.++....||.+.. +. .+..+++ +|
T Consensus 171 TGSGKT~v~l~~i~~~l~--~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IV-Vg 247 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLA--QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVV-IG 247 (679)
T ss_pred CCChHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEE-Ee
Confidence 356667666555433211 35689999999999999999998 678888888886531 11 1233444 79
Q ss_pred ccccee-----eeeeeecCCCCChhhcccccc---chhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHH
Q psy13288 85 SVSRIT-----RHTFAMTPSVGPIVDRKFGQI---FNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFM 146 (200)
Q Consensus 85 TPgrl~-----~~~~v~d~~~~DEAD~ll~~~---f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~ 146 (200)
||+++. ..++|+ ||+|..--.+ ..-+...+ .+.+....+.|+ ++|||-+.+....+
T Consensus 248 Trsal~~p~~~l~liVv-----DEeh~~s~~~~~~p~y~~r~v-a~~ra~~~~~~~il~SATps~~s~~~~ 312 (679)
T PRK05580 248 ARSALFLPFKNLGLIIV-----DEEHDSSYKQQEGPRYHARDL-AVVRAKLENIPVVLGSATPSLESLANA 312 (679)
T ss_pred ccHHhcccccCCCEEEE-----ECCCccccccCcCCCCcHHHH-HHHHhhccCCCEEEEcCCCCHHHHHHH
Confidence 999887 345666 4556532111 10011001 233444568899 99999775655444
No 67
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.81 E-value=3.1e-08 Score=86.59 Aligned_cols=174 Identities=14% Similarity=-0.066 Sum_probs=94.4
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh--c-------CCcEEEEeCCccc----cc----c---
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK--V-------NLPLYVESQGTSK----FR----S--- 74 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~--~-------~l~~~~~~gg~~~----~~----~--- 74 (200)
.++|+|+.+..|... ...++++++||++|+.|.++.++ . +..+....|.+.. +. .
T Consensus 23 TGsGKT~~~~~~~l~-----~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~ 97 (357)
T TIGR03158 23 TGAGKTLAWLTPLLH-----GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSK 97 (357)
T ss_pred CCCCHHHHHHHHHHH-----cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCc
Confidence 556666666655432 23468999999999999888776 1 3444444442111 00 0
Q ss_pred -------------CCCCceeeecccccee--------------------eeeeeecCCCCChhhcccccc--chhhhhcH
Q psy13288 75 -------------FGKGDIFNAGSVSRIT--------------------RHTFAMTPSVGPIVDRKFGQI--FNGQILVP 119 (200)
Q Consensus 75 -------------~~~~~~~~~~TPgrl~--------------------~~~~v~d~~~~DEAD~ll~~~--f~~~i~~i 119 (200)
.+..+++ ++||.-+. ...+|+ ||+|.+=..+ +.......
T Consensus 98 g~~~~~~~r~~~~~~~p~il-lT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~-----DE~H~~~~~~~~~~~~~l~~ 171 (357)
T TIGR03158 98 GEKLYNLLRNPIGTSTPIIL-LTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF-----DEFHLYDAKQLVGMLFLLAY 171 (357)
T ss_pred cchhhhhHHHHHhcCCCCEE-EecHHHHHHHHhhhccCcccchhhhhcCCCEEEE-----ecccccCcccchhhhhhhHH
Confidence 0112222 45553322 123333 7778754321 11100011
Q ss_pred HHHHhhCCCCcEE-EEEeeCchhHHHHHHHh--CCCCeEEEecc-------------------ccccccceEEEEEcccc
Q psy13288 120 KHVLRSLEPKTKV-SAIATFPLTVKNFMEKH--LKDPYEINLME-------------------ELTLKGVTQYYAFVQER 177 (200)
Q Consensus 120 ~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~--l~~~~~i~v~~-------------------~~~~~~i~q~~i~~~~~ 177 (200)
..+++..+...+. +.|||++..+.+..... +.+|....-+. ....+.+.+.+.. ...
T Consensus 172 ~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 250 (357)
T TIGR03158 172 MQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APD 250 (357)
T ss_pred HHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCc
Confidence 3444444445788 99999999988877765 55554332111 0112367777766 555
Q ss_pred cHHHHHHHHHhh-------CCCCeEEEEeC
Q psy13288 178 QKVHCLNTLFSK-------CCSLLGVFTCT 200 (200)
Q Consensus 178 ~K~~~L~~ll~~-------~~~~k~iIF~n 200 (200)
.|...|..+++. .+.+++|||||
T Consensus 251 ~~~~~l~~l~~~i~~~~~~~~~~k~LIf~n 280 (357)
T TIGR03158 251 FKEEELSELAEEVIERFRQLPGERGAIILD 280 (357)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCeEEEEEC
Confidence 566655444442 24579999997
No 68
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.61 E-value=1.8e-07 Score=88.86 Aligned_cols=155 Identities=6% Similarity=-0.012 Sum_probs=97.2
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh----cCCcEEEEeCCccccc-cCCCCceeeecccccee------------eeeeeecC
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK----VNLPLYVESQGTSKFR-SFGKGDIFNAGSVSRIT------------RHTFAMTP 98 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~----~~l~~~~~~gg~~~~~-~~~~~~~~~~~TPgrl~------------~~~~v~d~ 98 (200)
+-+++-+||+|-||.+.++.++ .++++...+|...... .....+++ ++||-++- +..+|+
T Consensus 76 ~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~l~~~~Vi-VtT~EK~Dsl~R~~~~~~~~V~lvVi-- 152 (766)
T COG1204 76 GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDERLARYDVI-VTTPEKLDSLTRKRPSWIEEVDLVVI-- 152 (766)
T ss_pred CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchhhhccCCEE-EEchHHhhHhhhcCcchhhcccEEEE--
Confidence 5789999999999999999998 8999999999987533 34455665 78887765 455556
Q ss_pred CCCChhhccccccchhhhhcHHHHHhh---CCCCcEE-EEEeeCchhHHHHHHHhCCCCeEEEec--cccccccceEEEE
Q psy13288 99 SVGPIVDRKFGQIFNGQILVPKHVLRS---LEPKTKV-SAIATFPLTVKNFMEKHLKDPYEINLM--EELTLKGVTQYYA 172 (200)
Q Consensus 99 ~~~DEAD~ll~~~f~~~i~~i~~i~~~---l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~--~~~~~~~i~q~~i 172 (200)
||+|.+-|..-..-+ +.|..+ .....|+ -.|||+| +..+++.-.=-++..-... ......-..+.++
T Consensus 153 ---DEiH~l~d~~RG~~l---E~iv~r~~~~~~~~rivgLSATlp-N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~ 225 (766)
T COG1204 153 ---DEIHLLGDRTRGPVL---ESIVARMRRLNELIRIVGLSATLP-NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFL 225 (766)
T ss_pred ---eeeeecCCcccCcee---hhHHHHHHhhCcceEEEEEeeecC-CHHHHHHHhCCcccccCCCCcccccCCccceEEE
Confidence 566888777555555 444443 3344788 8999997 4455554322233321221 1111112334444
Q ss_pred EcccccH-------HHHHHHHHhhC-CCCeEEEEeC
Q psy13288 173 FVQERQK-------VHCLNTLFSKC-CSLLGVFTCT 200 (200)
Q Consensus 173 ~~~~~~K-------~~~L~~ll~~~-~~~k~iIF~n 200 (200)
......| ...+..++... ..+|++||||
T Consensus 226 ~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~ 261 (766)
T COG1204 226 GADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVH 261 (766)
T ss_pred EecCccccccccchHHHHHHHHHHHhcCCeEEEEEe
Confidence 4443332 44444555544 5679999996
No 69
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.60 E-value=2.4e-08 Score=95.11 Aligned_cols=76 Identities=18% Similarity=0.124 Sum_probs=58.9
Q ss_pred HhHhhhcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc--CCCCcee
Q psy13288 10 ILLILKKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS--FGKGDIF 81 (200)
Q Consensus 10 i~~~l~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~--~~~~~~~ 81 (200)
|..+-.|+|+|+++.+|.. +... +.++.|++||+|||.|.++++. .++++.++.||.+.... ....++.
T Consensus 99 Iaem~TGeGKTL~a~Lpa~~~al~---G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y~~dIv 175 (896)
T PRK13104 99 IAEMRTGEGKTLVATLPAYLNAIS---GRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAYKADIV 175 (896)
T ss_pred cccccCCCCchHHHHHHHHHHHhc---CCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHhCCCEE
Confidence 4566678999999999994 4322 3469999999999999999998 78999999999764211 1134554
Q ss_pred eeccccce
Q psy13288 82 NAGSVSRI 89 (200)
Q Consensus 82 ~~~TPgrl 89 (200)
+|||||+
T Consensus 176 -ygT~grl 182 (896)
T PRK13104 176 -YGTNNEY 182 (896)
T ss_pred -EECChhh
Confidence 7999998
No 70
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.57 E-value=2e-07 Score=72.30 Aligned_cols=138 Identities=22% Similarity=0.199 Sum_probs=92.0
Q ss_pred hhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh--c-C--CcEEEEeCCccc---cccCCCCc-eeeec
Q psy13288 14 LKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK--V-N--LPLYVESQGTSK---FRSFGKGD-IFNAG 84 (200)
Q Consensus 14 l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~--~-~--l~~~~~~gg~~~---~~~~~~~~-~~~~~ 84 (200)
-.|+|+|..+..+..........-++++++||++++.|..+.+. . . .......+|... ........ -..++
T Consensus 32 ~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 111 (201)
T smart00487 32 PTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVT 111 (201)
T ss_pred CCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEe
Confidence 34566666555554332222224579999999999999998888 1 1 234444555431 00011221 22358
Q ss_pred ccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCC
Q psy13288 85 SVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLK 151 (200)
Q Consensus 85 TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~ 151 (200)
|++++. ..++|+ ||||.+....+.+.+ ..+++.+++..+. ++|||.++.....+..++.
T Consensus 112 t~~~l~~~~~~~~~~~~~~~~iIi-----DE~h~~~~~~~~~~~---~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 112 TPGRLLDLLENDLLELSNVDLVIL-----DEAHRLLDGGFGDQL---EKLLKLLPKNVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred ChHHHHHHHHcCCcCHhHCCEEEE-----ECHHHHhcCCcHHHH---HHHHHhCCccceEEEEecCCchhHHHHHHHhcC
Confidence 887666 124455 677999876777776 8888888778888 9999999999999999999
Q ss_pred CCeEEEec
Q psy13288 152 DPYEINLM 159 (200)
Q Consensus 152 ~~~~i~v~ 159 (200)
+...+..+
T Consensus 184 ~~~~~~~~ 191 (201)
T smart00487 184 DPVFIDVG 191 (201)
T ss_pred CCEEEeCC
Confidence 87777654
No 71
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.56 E-value=2.3e-06 Score=84.87 Aligned_cols=181 Identities=12% Similarity=0.012 Sum_probs=101.2
Q ss_pred chhhHHhHhhhcCccEEEecCccc-------ccc-cCCCCeeEEE--EcCC----HHHHHHHHHHhhcCCcEEEEeCC-c
Q psy13288 5 SFEHSILLILKKSDFTLKISCPRS-------QLT-VQELSLRLVM--CVIF----REVLLKISSWEKVNLPLYVESQG-T 69 (200)
Q Consensus 5 ~~~~~i~~~l~~~~~~l~~~~p~~-------~~~-~~~~~~~~lI--l~PT----RELa~Qi~~~~~~~l~~~~~~gg-~ 69 (200)
++...|..++++.+.++-...|.+ ++. ....+.++.| .-|- +++|.++.+.+. ..+...+|. .
T Consensus 70 ~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg--~~lG~~VGY~v 147 (1283)
T TIGR01967 70 AKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELG--TPLGEKVGYKV 147 (1283)
T ss_pred HHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhC--CCcceEEeeEE
Confidence 345667777777776666655543 111 1111222333 3344 445555555554 333334443 1
Q ss_pred cccccCCCCceeeeccccceee-----------eeeeecCCCCChhh-ccccccchhhhhcHHHHHhhCCCCcEE-EEEe
Q psy13288 70 SKFRSFGKGDIFNAGSVSRITR-----------HTFAMTPSVGPIVD-RKFGQIFNGQILVPKHVLRSLEPKTKV-SAIA 136 (200)
Q Consensus 70 ~~~~~~~~~~~~~~~TPgrl~~-----------~~~v~d~~~~DEAD-~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSA 136 (200)
...+..+..-.+.++|||+++. .++|+ |||| ++++.+|.-.+ +.+++...| +.|+ ++||
T Consensus 148 R~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~III-----DEaHERsL~~D~LL~l--Lk~il~~rp-dLKlIlmSA 219 (1283)
T TIGR01967 148 RFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIII-----DEAHERSLNIDFLLGY--LKQLLPRRP-DLKIIITSA 219 (1283)
T ss_pred cCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEE-----cCcchhhccchhHHHH--HHHHHhhCC-CCeEEEEeC
Confidence 2212222334455799999982 33444 7789 69999888663 377766554 6789 9999
Q ss_pred eCchhHHHHHHHhCCCCeEEEeccccccccceEEEEEccc------ccHHHHHHHHHhh---CCCCeEEEEeC
Q psy13288 137 TFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQE------RQKVHCLNTLFSK---CCSLLGVFTCT 200 (200)
Q Consensus 137 T~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~q~~i~~~~------~~K~~~L~~ll~~---~~~~k~iIF~n 200 (200)
|++. ..+++.|.+.|+ |.+.... ..++.+|..+.. .++...+...+.. ...+++|||++
T Consensus 220 Tld~--~~fa~~F~~apv-I~V~Gr~--~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLp 287 (1283)
T TIGR01967 220 TIDP--ERFSRHFNNAPI-IEVSGRT--YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLP 287 (1283)
T ss_pred CcCH--HHHHHHhcCCCE-EEECCCc--ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCC
Confidence 9974 567766655554 5554211 235667765532 1344444444432 25689999996
No 72
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.55 E-value=2.5e-08 Score=94.53 Aligned_cols=78 Identities=10% Similarity=-0.008 Sum_probs=59.8
Q ss_pred HhHhhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccc--c-ccCCCCcee
Q psy13288 10 ILLILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSK--F-RSFGKGDIF 81 (200)
Q Consensus 10 i~~~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~--~-~~~~~~~~~ 81 (200)
|..+-.|+|+|++...|.-. ...++.++.|++||++||.|.++++. .+++++++.||.+. . +.....++.
T Consensus 95 Iaem~TGeGKTL~a~lp~~l--~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y~~dIv 172 (790)
T PRK09200 95 IAEMQTGEGKTLTATMPLYL--NALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIYEADII 172 (790)
T ss_pred eeeecCCCcchHHHHHHHHH--HHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhcCCCEE
Confidence 44556789999999988842 11247789999999999999999998 79999999999872 1 112244554
Q ss_pred eecccccee
Q psy13288 82 NAGSVSRIT 90 (200)
Q Consensus 82 ~~~TPgrl~ 90 (200)
+|||||+-
T Consensus 173 -ygT~~~l~ 180 (790)
T PRK09200 173 -YTTNSELG 180 (790)
T ss_pred -EECCcccc
Confidence 79999993
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=98.46 E-value=3.5e-08 Score=92.65 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=57.3
Q ss_pred HhHhhhcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc--cCCCCcee
Q psy13288 10 ILLILKKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR--SFGKGDIF 81 (200)
Q Consensus 10 i~~~l~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~--~~~~~~~~ 81 (200)
|...-.|+|+|+.+..|.. .... +-++.|++||+|||.|.++++. .++++.++.||.+... .....++.
T Consensus 73 Iaem~TGeGKTLva~lpa~l~aL~---G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~~dIv 149 (745)
T TIGR00963 73 IAEMKTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDIT 149 (745)
T ss_pred eeeecCCCccHHHHHHHHHHHHHh---CCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcCCCEE
Confidence 4445678999999999872 3222 3479999999999999999998 7899999999976421 11133544
Q ss_pred eeccccce
Q psy13288 82 NAGSVSRI 89 (200)
Q Consensus 82 ~~~TPgrl 89 (200)
+|||||+
T Consensus 150 -yGT~~rl 156 (745)
T TIGR00963 150 -YGTNNEL 156 (745)
T ss_pred -EECCCch
Confidence 7999999
No 74
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=1.9e-06 Score=78.66 Aligned_cols=122 Identities=16% Similarity=-0.054 Sum_probs=71.2
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh--cCCcEEEEeCCcccc------cc--CCCCceeeec
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK--VNLPLYVESQGTSKF------RS--FGKGDIFNAG 84 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~--~~l~~~~~~gg~~~~------~~--~~~~~~~~~~ 84 (200)
.|+|+|..|.....+.- ..+-++|+++||++|+.|+.+.++ .+.++....|+.+.. +. .+..++ .+|
T Consensus 6 TGsGKT~v~l~~i~~~l--~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~I-VVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVL--ALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILV-VIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCE-EEC
Confidence 46777776644332221 235589999999999999999998 567787887775431 11 123334 379
Q ss_pred ccccee-----eeeeeecCCCCChhhccc-cc--cchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHH
Q psy13288 85 SVSRIT-----RHTFAMTPSVGPIVDRKF-GQ--IFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNF 145 (200)
Q Consensus 85 TPgrl~-----~~~~v~d~~~~DEAD~ll-~~--~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~ 145 (200)
|++.+. ...+|+| |+|..- .+ +..-+...+ ..++....+.++ ++|||-+.+....
T Consensus 83 Trsalf~p~~~l~lIIVD-----Eeh~~sykq~~~p~y~ar~~-a~~ra~~~~~~vil~SATPsles~~~ 146 (505)
T TIGR00595 83 TRSALFLPFKNLGLIIVD-----EEHDSSYKQEEGPRYHARDV-AVYRAKKFNCPVVLGSATPSLESYHN 146 (505)
T ss_pred ChHHHcCcccCCCEEEEE-----CCCccccccccCCCCcHHHH-HHHHHHhcCCCEEEEeCCCCHHHHHH
Confidence 998876 3445664 445443 21 111011001 223333457889 9999965444333
No 75
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.32 E-value=1.9e-07 Score=88.16 Aligned_cols=77 Identities=12% Similarity=-0.006 Sum_probs=55.4
Q ss_pred HhHhhhcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcc---cc----ccCC
Q psy13288 10 ILLILKKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTS---KF----RSFG 76 (200)
Q Consensus 10 i~~~l~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~---~~----~~~~ 76 (200)
|...=.|+|+|+.+..|.. +.. .+..++|++||++||.|..+++. .++++.++++|.. .. +...
T Consensus 87 Iaem~TGeGKTLta~Lpa~l~aL---~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y 163 (762)
T TIGR03714 87 IAEMKTGEGKTLTATMPLYLNAL---TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIY 163 (762)
T ss_pred eeEecCCcchHHHHHHHHHHHhh---cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhC
Confidence 3444567999999999973 222 34579999999999999999996 7899988887622 11 1122
Q ss_pred CCceeeecccccee
Q psy13288 77 KGDIFNAGSVSRIT 90 (200)
Q Consensus 77 ~~~~~~~~TPgrl~ 90 (200)
..++. +||||++.
T Consensus 164 ~~dIv-ygTp~~Lg 176 (762)
T TIGR03714 164 NSDIV-YTTNSALG 176 (762)
T ss_pred CCCEE-EECchhhh
Confidence 44554 79999993
No 76
>PRK13766 Hef nuclease; Provisional
Probab=98.13 E-value=7.2e-06 Score=78.29 Aligned_cols=125 Identities=10% Similarity=0.033 Sum_probs=72.6
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh--cCC---cEEEEeCCccccc---cCCCCceeeeccc
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK--VNL---PLYVESQGTSKFR---SFGKGDIFNAGSV 86 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~--~~l---~~~~~~gg~~~~~---~~~~~~~~~~~TP 86 (200)
.|.|+|+.+..+..... ...+.++|||+||++|+.|..+.++ .++ ++....|+.+... .+...+++ ++||
T Consensus 38 tG~GKT~~a~~~i~~~l-~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~~~ii-v~T~ 115 (773)
T PRK13766 38 TGLGKTAIALLVIAERL-HKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEKAKVI-VATP 115 (773)
T ss_pred CCccHHHHHHHHHHHHH-HhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhCCCEE-EECH
Confidence 34555543333332211 1235689999999999999999888 343 6666777654310 12233444 7999
Q ss_pred ccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCc---hhHHHHHHHh
Q psy13288 87 SRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFP---LTVKNFMEKH 149 (200)
Q Consensus 87 grl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~---~~v~~~~~~~ 149 (200)
+.+. ...+|+ ||||++.+......+ ...+....+..++ .+|||-. ..+..+.+..
T Consensus 116 ~~l~~~l~~~~~~~~~~~liVv-----DEaH~~~~~~~~~~i---~~~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L 186 (773)
T PRK13766 116 QVIENDLIAGRISLEDVSLLIF-----DEAHRAVGNYAYVYI---AERYHEDAKNPLVLGLTASPGSDEEKIKEVCENL 186 (773)
T ss_pred HHHHHHHHcCCCChhhCcEEEE-----ECCccccccccHHHH---HHHHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhC
Confidence 7664 233444 778999765443333 3334334445677 9999953 3444444443
No 77
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.07 E-value=1.5e-06 Score=82.77 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=57.5
Q ss_pred HhHhhhcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc--cCCCCcee
Q psy13288 10 ILLILKKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR--SFGKGDIF 81 (200)
Q Consensus 10 i~~~l~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~--~~~~~~~~ 81 (200)
|...-.|+|+|+.+..|.- .... +-++-|++||++||.|.++++. .++++.++.||.+... .....++.
T Consensus 98 Iaem~TGeGKTLva~lpa~l~aL~---G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~~dI~ 174 (830)
T PRK12904 98 IAEMKTGEGKTLVATLPAYLNALT---GKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYAADIT 174 (830)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcCCCeE
Confidence 5666778999999999883 3322 2246699999999999999998 7999999999976421 11134544
Q ss_pred eeccccce
Q psy13288 82 NAGSVSRI 89 (200)
Q Consensus 82 ~~~TPgrl 89 (200)
.|||||+
T Consensus 175 -ygT~~el 181 (830)
T PRK12904 175 -YGTNNEF 181 (830)
T ss_pred -EECCcch
Confidence 7999999
No 78
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=97.88 E-value=5.6e-06 Score=79.20 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=58.1
Q ss_pred HhHhhhcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc--CCCCcee
Q psy13288 10 ILLILKKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS--FGKGDIF 81 (200)
Q Consensus 10 i~~~l~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~--~~~~~~~ 81 (200)
|...-.|+|+||.+..|.. .... +..+.|++||++||.|..+++. .++++.++.||.+.... ....++.
T Consensus 99 IaEm~TGEGKTL~a~lp~~l~al~---g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~Y~~dI~ 175 (908)
T PRK13107 99 IAEMRTGEGKTLTATLPAYLNALT---GKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAAYNADIT 175 (908)
T ss_pred cccccCCCCchHHHHHHHHHHHhc---CCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhcCCCCeE
Confidence 4455678999999999984 3322 3349999999999999999998 89999999998764211 1134554
Q ss_pred eecccccee
Q psy13288 82 NAGSVSRIT 90 (200)
Q Consensus 82 ~~~TPgrl~ 90 (200)
.||||++-
T Consensus 176 -YgT~~e~g 183 (908)
T PRK13107 176 -YGTNNEFG 183 (908)
T ss_pred -EeCCCccc
Confidence 79999993
No 79
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.86 E-value=1.5e-05 Score=58.06 Aligned_cols=116 Identities=22% Similarity=0.102 Sum_probs=72.3
Q ss_pred hhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh--c--CCcEEEEeCCccccc----cCCCCceeeecc
Q psy13288 14 LKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK--V--NLPLYVESQGTSKFR----SFGKGDIFNAGS 85 (200)
Q Consensus 14 l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~--~--~l~~~~~~gg~~~~~----~~~~~~~~~~~T 85 (200)
-.|+|+|..+..............++++++|++.|+.|..+.+. . ...+....++..... ......+ .++|
T Consensus 8 ~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~i~t 86 (144)
T cd00046 8 PTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKTDI-VVGT 86 (144)
T ss_pred CCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCCCE-EEEC
Confidence 34567776655555333222345689999999999999998888 3 377777776654421 1223333 3688
Q ss_pred cccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeC
Q psy13288 86 VSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATF 138 (200)
Q Consensus 86 Pgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~ 138 (200)
++++. ..++++ ||||.+-+..+.... .......+...+. ++|||.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~iii-----DE~h~~~~~~~~~~~---~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 87 PGRLLDELERLKLSLKKLDLLIL-----DEAHRLLNQGFGLLG---LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cHHHHHHHHcCCcchhcCCEEEE-----eCHHHHhhcchHHHH---HHHHhhCCccceEEEEeccC
Confidence 88665 233444 778999877655442 1223334567788 999993
No 80
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.85 E-value=0.00011 Score=71.05 Aligned_cols=180 Identities=12% Similarity=0.075 Sum_probs=109.1
Q ss_pred HhhhcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHH-HHHHHhh----c--CCcEEEEeCCcccccc----CCCCc
Q psy13288 12 LILKKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLL-KISSWEK----V--NLPLYVESQGTSKFRS----FGKGD 79 (200)
Q Consensus 12 ~~l~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~-Qi~~~~~----~--~l~~~~~~gg~~~~~~----~~~~~ 79 (200)
..-.+|++|..|.+|.. ++..+.. -+||+|-||+.||. |..+.-+ . +++.....|.+.-.+. .+..+
T Consensus 91 tTgTgSGKTe~FllPIld~~l~~~~-a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~ 169 (851)
T COG1205 91 TTGTGSGKTESFLLPILDHLLRDPS-ARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPD 169 (851)
T ss_pred ECCCCCchhHHHHHHHHHHHhhCcC-ccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCC
Confidence 34567999999999994 4444433 39999999999996 4433333 2 3566655555543211 22333
Q ss_pred eeeecccccee----------------eeeeeecCCCCChhhccccccchhhh----hcHHHHHhhCCCCcEE-EEEeeC
Q psy13288 80 IFNAGSVSRIT----------------RHTFAMTPSVGPIVDRKFGQIFNGQI----LVPKHVLRSLEPKTKV-SAIATF 138 (200)
Q Consensus 80 ~~~~~TPgrl~----------------~~~~v~d~~~~DEAD~ll~~~f~~~i----~~i~~i~~~l~~~~Q~-lfSAT~ 138 (200)
|+ +++|.=|- .+++|+|| +|.--. -|..++ +.+..+++..+.+.|. ..|||+
T Consensus 170 Il-lTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDE-----lHtYrG-v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~ 242 (851)
T COG1205 170 IL-LTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDE-----LHTYRG-VQGSEVALLLRRLLRRLRRYGSPLQIICTSATL 242 (851)
T ss_pred EE-EeCHHHHHHHhccCcchHHHHHhcCcEEEEec-----ceeccc-cchhHHHHHHHHHHHHHhccCCCceEEEEeccc
Confidence 33 45554222 46777744 465422 244443 2234444455678899 999998
Q ss_pred chhHHHHHHHhCCCCeEEEeccccccccceEEEEEcc---------cccHHHHHHHHHhhC--CCCeEEEEeC
Q psy13288 139 PLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQ---------ERQKVHCLNTLFSKC--CSLLGVFTCT 200 (200)
Q Consensus 139 ~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~q~~i~~~---------~~~K~~~L~~ll~~~--~~~k~iIF~n 200 (200)
. +..+++..+........+.+...+..-+.++..-+ ..++...+..+.... +.-|+|+|+.
T Consensus 243 ~-np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~ 314 (851)
T COG1205 243 A-NPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFR 314 (851)
T ss_pred c-ChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEe
Confidence 4 45667777777666655665555666677766655 235555555555533 5679999983
No 81
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.70 E-value=0.0013 Score=58.96 Aligned_cols=71 Identities=7% Similarity=0.068 Sum_probs=47.7
Q ss_pred cEE-EEEeeCchhHHHHHHHhCCCC-eEEEec---c-----ccccccceEEEEEccc-------ccHHHHHHH-HHh---
Q psy13288 130 TKV-SAIATFPLTVKNFMEKHLKDP-YEINLM---E-----ELTLKGVTQYYAFVQE-------RQKVHCLNT-LFS--- 188 (200)
Q Consensus 130 ~Q~-lfSAT~~~~v~~~~~~~l~~~-~~i~v~---~-----~~~~~~i~q~~i~~~~-------~~K~~~L~~-ll~--- 188 (200)
||+ +||+..+.++..+.+.++.|. -.+.+. . ......++|.|...+. +.++++..+ +|.
T Consensus 216 RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~ 295 (442)
T PF06862_consen 216 RQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLK 295 (442)
T ss_pred eEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhh
Confidence 799 999999999999999987764 333332 2 2345568999988553 225554443 333
Q ss_pred -hCCCCeEEEEeC
Q psy13288 189 -KCCSLLGVFTCT 200 (200)
Q Consensus 189 -~~~~~k~iIF~n 200 (200)
....+.+|||+.
T Consensus 296 ~~~~~~~~LIfIP 308 (442)
T PF06862_consen 296 RDSKMSGTLIFIP 308 (442)
T ss_pred hccCCCcEEEEec
Confidence 234578999984
No 82
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=97.65 E-value=0.0003 Score=67.31 Aligned_cols=173 Identities=10% Similarity=-0.033 Sum_probs=102.8
Q ss_pred cCccEEEecCcc-cccc-----cCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccc---ccCCCCcee
Q psy13288 16 KSDFTLKISCPR-SQLT-----VQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKF---RSFGKGDIF 81 (200)
Q Consensus 16 ~~~~~l~~~~p~-~~~~-----~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~---~~~~~~~~~ 81 (200)
|+|+|++--+|. ..+. +...++.||-|+|=|.|+.=+..-++ .++.+.+-.|-++.. +...+...+
T Consensus 47 GsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdI 126 (814)
T COG1201 47 GSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHI 126 (814)
T ss_pred CCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcE
Confidence 455555545554 2221 22467999999999999999988887 788888888877642 233344444
Q ss_pred eecccccee--------------eeeeeecCCCCChhhccccccchhhhh-cHHHHHhhCCCCcEE-EEEeeCchhHHHH
Q psy13288 82 NAGSVSRIT--------------RHTFAMTPSVGPIVDRKFGQIFNGQIL-VPKHVLRSLEPKTKV-SAIATFPLTVKNF 145 (200)
Q Consensus 82 ~~~TPgrl~--------------~~~~v~d~~~~DEAD~ll~~~f~~~i~-~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~ 145 (200)
-+.||..+. ++++|+ ||.|.+.+..-..++. .+.++-...+ +-|. -.|||.. +...+
T Consensus 127 LiTTPEsL~lll~~~~~r~~l~~vr~VIV-----DEiHel~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~-~~~~v 199 (814)
T COG1201 127 LITTPESLAILLNSPKFRELLRDVRYVIV-----DEIHALAESKRGVQLALSLERLRELAG-DFQRIGLSATVG-PPEEV 199 (814)
T ss_pred EEeChhHHHHHhcCHHHHHHhcCCcEEEe-----ehhhhhhccccchhhhhhHHHHHhhCc-ccEEEeehhccC-CHHHH
Confidence 479999776 567777 4559999764444431 2344444445 7888 8899995 34444
Q ss_pred HHHhCCC--CeEE-EeccccccccceEEEEEcc-------cc--cHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 146 MEKHLKD--PYEI-NLMEELTLKGVTQYYAFVQ-------ER--QKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 146 ~~~~l~~--~~~i-~v~~~~~~~~i~q~~i~~~-------~~--~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
++-...+ +..| .+.... +.+...+... .. .-+..+..+.++. ..++||+|
T Consensus 200 arfL~g~~~~~~Iv~~~~~k---~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~N 261 (814)
T COG1201 200 AKFLVGFGDPCEIVDVSAAK---KLEIKVISPVEDLIYDEELWAALYERIAELVKKH--RTTLIFTN 261 (814)
T ss_pred HHHhcCCCCceEEEEcccCC---cceEEEEecCCccccccchhHHHHHHHHHHHhhc--CcEEEEEe
Confidence 4433333 4444 333211 1122222111 11 1344555665543 48999998
No 83
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=97.50 E-value=0.0018 Score=59.58 Aligned_cols=153 Identities=12% Similarity=0.036 Sum_probs=97.6
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccccC---------CCCceeeecccc---------cee--
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRSF---------GKGDIFNAGSVS---------RIT-- 90 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~~---------~~~~~~~~~TPg---------rl~-- 90 (200)
+-+-|.|||--.||.|=++.|+ .++++.+-+|-.-+ +.. -..+|+ +||-- +.+
T Consensus 261 g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srI-k~~~~pv~~~t~~dADII-VGTYEGiD~lLRtg~~lgd 338 (830)
T COG1202 261 GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRI-KTREEPVVVDTSPDADII-VGTYEGIDYLLRTGKDLGD 338 (830)
T ss_pred CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhh-cccCCccccCCCCCCcEE-EeechhHHHHHHcCCcccc
Confidence 4568999999999999999998 77888777764332 111 133444 44421 111
Q ss_pred eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCCeEEEeccccccccceE
Q psy13288 91 RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ 169 (200)
Q Consensus 91 ~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~q 169 (200)
+.++|+ ||.|.+-|..-..-++-+..-++++-+..|. ..|||.- +-.++++.+--+++..+ +... -++-
T Consensus 339 iGtVVI-----DEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVg-Np~elA~~l~a~lV~y~---~RPV-plEr 408 (830)
T COG1202 339 IGTVVI-----DEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVG-NPEELAKKLGAKLVLYD---ERPV-PLER 408 (830)
T ss_pred cceEEe-----eeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecC-ChHHHHHHhCCeeEeec---CCCC-ChhH
Confidence 455666 4558777655555542223444555668999 9999983 44667777644544442 2222 2455
Q ss_pred EEEEcc-cccHHHHHHHHHhhC--------CCCeEEEEeC
Q psy13288 170 YYAFVQ-ERQKVHCLNTLFSKC--------CSLLGVFTCT 200 (200)
Q Consensus 170 ~~i~~~-~~~K~~~L~~ll~~~--------~~~k~iIF~n 200 (200)
+.++|. +.+|.+....|.+.. -.+|+|||.|
T Consensus 409 Hlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~ 448 (830)
T COG1202 409 HLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTY 448 (830)
T ss_pred eeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEec
Confidence 556676 678999888888632 4589999986
No 84
>KOG0952|consensus
Probab=97.47 E-value=0.0033 Score=61.09 Aligned_cols=157 Identities=9% Similarity=0.106 Sum_probs=94.1
Q ss_pred cccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc-CCCCceeeecccccee-------------
Q psy13288 30 LTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS-FGKGDIFNAGSVSRIT------------- 90 (200)
Q Consensus 30 ~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~-~~~~~~~~~~TPgrl~------------- 90 (200)
.+-..+..+.+-|+|++.||.-+.+-+. .+++|.-++|.+...+. ....|++ +.||-+.=
T Consensus 158 ~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~tei~~tqii-VTTPEKwDvvTRk~~~d~~l~ 236 (1230)
T KOG0952|consen 158 GDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTEIADTQII-VTTPEKWDVVTRKSVGDSALF 236 (1230)
T ss_pred cccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHHHHhcCEE-Eecccceeeeeeeeccchhhh
Confidence 4456688999999999999998887777 58889888988776332 3355665 78887653
Q ss_pred --eeeeeecCCCCChhhccccccchhhhhcHHHHHhhC----C---CCcEE-EEEeeCchhHHHHHHHhCC-CCeE-E-E
Q psy13288 91 --RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSL----E---PKTKV-SAIATFPLTVKNFMEKHLK-DPYE-I-N 157 (200)
Q Consensus 91 --~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l----~---~~~Q~-lfSAT~~~~v~~~~~~~l~-~~~~-i-~ 157 (200)
++.+++ ||.|.| .+.-.+-+ +.|..+. . ..-.+ -.|||+| +..+++. |++ ||.. + .
T Consensus 237 ~~V~LviI-----DEVHlL-hd~RGpvl---EtiVaRtlr~vessqs~IRivgLSATlP-N~eDvA~-fL~vn~~~glfs 305 (1230)
T KOG0952|consen 237 SLVRLVII-----DEVHLL-HDDRGPVL---ETIVARTLRLVESSQSMIRIVGLSATLP-NYEDVAR-FLRVNPYAGLFS 305 (1230)
T ss_pred hheeeEEe-----eeehhh-cCcccchH---HHHHHHHHHHHHhhhhheEEEEeeccCC-CHHHHHH-HhcCCCccceee
Confidence 344455 555655 44444444 4444332 1 23345 7899998 4556554 343 4322 1 2
Q ss_pred eccccccccceEEEEEcccc---c--------HHHHHHHHHhhCCCCeEEEEeC
Q psy13288 158 LMEELTLKGVTQYYAFVQER---Q--------KVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 158 v~~~~~~~~i~q~~i~~~~~---~--------K~~~L~~ll~~~~~~k~iIF~n 200 (200)
.+..--+--++|.++-++.. . +++.+.+.+. ...|++|||.
T Consensus 306 Fd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~--~g~qVlvFvh 357 (1230)
T KOG0952|consen 306 FDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQ--EGHQVLVFVH 357 (1230)
T ss_pred ecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHH--cCCeEEEEEe
Confidence 22222222366776655543 1 3333333333 4579999984
No 85
>PRK09694 helicase Cas3; Provisional
Probab=97.37 E-value=0.00059 Score=66.14 Aligned_cols=123 Identities=18% Similarity=0.137 Sum_probs=71.1
Q ss_pred hhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-------cCCcEEEEeCCccccccC----------
Q psy13288 13 ILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-------VNLPLYVESQGTSKFRSF---------- 75 (200)
Q Consensus 13 ~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-------~~l~~~~~~gg~~~~~~~---------- 75 (200)
+=.|+++|-+......++......-++++..||+..+.|.++.++ ..-++.+..|+......+
T Consensus 308 ApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~ 387 (878)
T PRK09694 308 APTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATE 387 (878)
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccc
Confidence 334566666544444333233345689999999999999998775 234566666554321100
Q ss_pred ----------------C-C----Cceeeecccccee-----------------eeeeeecCCCCChhhccccccchhhhh
Q psy13288 76 ----------------G-K----GDIFNAGSVSRIT-----------------RHTFAMTPSVGPIVDRKFGQIFNGQIL 117 (200)
Q Consensus 76 ----------------~-~----~~~~~~~TPgrl~-----------------~~~~v~d~~~~DEAD~ll~~~f~~~i~ 117 (200)
+ + .++ .+||+..++ .+++|+ ||+|.. +..+...+
T Consensus 388 ~~~~~~~~~~~~w~~~~~kr~llapi-~V~TiDQlL~a~l~~kh~~lR~~~La~svvIi-----DEVHAy-D~ym~~lL- 459 (878)
T PRK09694 388 QGQEEAWVQCCEWLSQSNKRVFLGQI-GVCTIDQVLISVLPVKHRFIRGFGLGRSVLIV-----DEVHAY-DAYMYGLL- 459 (878)
T ss_pred cccchhhhHHHHHHhhhhhhhhcCCE-EEcCHHHHHHHHHccchHHHHHHhhccCeEEE-----echhhC-CHHHHHHH-
Confidence 0 0 122 246666555 245666 555765 54334443
Q ss_pred cHHHHHhhCCC-CcEE-EEEeeCchhHHHH
Q psy13288 118 VPKHVLRSLEP-KTKV-SAIATFPLTVKNF 145 (200)
Q Consensus 118 ~i~~i~~~l~~-~~Q~-lfSAT~~~~v~~~ 145 (200)
..+++.+.+ ...+ +.|||+|...++.
T Consensus 460 --~~~L~~l~~~g~~vIllSATLP~~~r~~ 487 (878)
T PRK09694 460 --EAVLKAQAQAGGSVILLSATLPATLKQK 487 (878)
T ss_pred --HHHHHHHHhcCCcEEEEeCCCCHHHHHH
Confidence 566655432 4567 9999999888763
No 86
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.98 E-value=0.018 Score=54.92 Aligned_cols=89 Identities=12% Similarity=0.093 Sum_probs=51.6
Q ss_pred eeEEEEcCCHHHHHHHHHHhh--c---CCcEEEEeCCccccccCCCCceeeecccccee--------------------e
Q psy13288 37 LRLVMCVIFREVLLKISSWEK--V---NLPLYVESQGTSKFRSFGKGDIFNAGSVSRIT--------------------R 91 (200)
Q Consensus 37 ~~~lIl~PTRELa~Qi~~~~~--~---~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~--------------------~ 91 (200)
-++||||||.+|+.|-.+.++ . ...+....|+... +..+...+ .++|..-+. .
T Consensus 299 k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~-~~~~~~~V-vVtTYq~l~~~~~r~~~~~~~l~~l~~~~~ 376 (732)
T TIGR00603 299 KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKE-RFHGEAGV-VVSTYSMVAHTGKRSYESEKVMEWLTNREW 376 (732)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCccc-ccccCCcE-EEEEHHHhhcccccchhhhHHHHHhccccC
Confidence 359999999999999998887 2 3444555554322 11111223 255553221 1
Q ss_pred eeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEEEEEeeCc
Q psy13288 92 HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKVSAIATFP 139 (200)
Q Consensus 92 ~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~lfSAT~~ 139 (200)
.++|+ ||||.+-...| ..++..+...+.+.+|||..
T Consensus 377 gLII~-----DEvH~lpA~~f-------r~il~~l~a~~RLGLTATP~ 412 (732)
T TIGR00603 377 GLILL-----DEVHVVPAAMF-------RRVLTIVQAHCKLGLTATLV 412 (732)
T ss_pred CEEEE-----EccccccHHHH-------HHHHHhcCcCcEEEEeecCc
Confidence 12333 78899855433 44555555455557799984
No 87
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.85 E-value=0.00032 Score=67.68 Aligned_cols=62 Identities=10% Similarity=-0.078 Sum_probs=48.7
Q ss_pred hhHHhHhhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHH-HHhh-----cCCcEEEEeCCccc
Q psy13288 7 EHSILLILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKIS-SWEK-----VNLPLYVESQGTSK 71 (200)
Q Consensus 7 ~~~i~~~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~-~~~~-----~~l~~~~~~gg~~~ 71 (200)
.+.+..+-.|.|+|++|+.|..... ++.++||++|||||+.|+. +.+. .++++.++.||.+.
T Consensus 265 ~~~~~eA~tGtGKT~ayllp~l~~~---~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~~~~~~~kg~~~y 332 (820)
T PRK07246 265 PASFIEAQTGIGKTYGYLLPLLAQS---DQRQIIVSVPTKILQDQIMAEEVKAIQEVFHIDCHSLKGPQNY 332 (820)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHhc---CCCcEEEEeCcHHHHHHHHHHHHHHHHHhcCCcEEEEECCccc
Confidence 3445667789999999999974321 3578999999999999994 5555 67888888998764
No 88
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.0082 Score=55.71 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=88.5
Q ss_pred EEEEcCCHHHH-HHHHHHhhcCCcEEEEeCCccc------cccCCCCceeee-cccccee------------eeeeeecC
Q psy13288 39 LVMCVIFREVL-LKISSWEKVNLPLYVESQGTSK------FRSFGKGDIFNA-GSVSRIT------------RHTFAMTP 98 (200)
Q Consensus 39 ~lIl~PTRELa-~Qi~~~~~~~l~~~~~~gg~~~------~~~~~~~~~~~~-~TPgrl~------------~~~~v~d~ 98 (200)
.||++|=--|- .|+...-..+++...+-++.+. .+.+...+...+ -+|-|+. ...+++
T Consensus 60 TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vI-- 137 (590)
T COG0514 60 TLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAI-- 137 (590)
T ss_pred EEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEe--
Confidence 67777776664 2444443467666655554332 111222222212 5666666 344455
Q ss_pred CCCChhhccccc--cchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCC--CCeEEEeccccccccceEEEEE
Q psy13288 99 SVGPIVDRKFGQ--IFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLK--DPYEINLMEELTLKGVTQYYAF 173 (200)
Q Consensus 99 ~~~DEAD~ll~~--~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~--~~~~i~v~~~~~~~~i~q~~i~ 173 (200)
||||.+-+- +|.++...+..+...+| +..+ .++||-++.++.-+...+. ++..+... ...+||.-....
T Consensus 138 ---DEAHCiSqWGhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s--fdRpNi~~~v~~ 211 (590)
T COG0514 138 ---DEAHCISQWGHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGS--FDRPNLALKVVE 211 (590)
T ss_pred ---chHHHHhhcCCccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec--CCCchhhhhhhh
Confidence 778999775 59999988888888888 7777 9999999999997666554 55444322 222333222111
Q ss_pred c-ccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 174 V-QERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 174 ~-~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
. +..+|+..+.. ......+.+||||+
T Consensus 212 ~~~~~~q~~fi~~-~~~~~~~~GIIYc~ 238 (590)
T COG0514 212 KGEPSDQLAFLAT-VLPQLSKSGIIYCL 238 (590)
T ss_pred cccHHHHHHHHHh-hccccCCCeEEEEe
Confidence 1 23445554444 12334566899984
No 89
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=96.30 E-value=0.006 Score=54.96 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=46.7
Q ss_pred EEEEcCCHHHHHHHHHHhh--cCC--cEEEEeCCccccccCCCCceeeecc---ccce--e-------eeeeeecCCCCC
Q psy13288 39 LVMCVIFREVLLKISSWEK--VNL--PLYVESQGTSKFRSFGKGDIFNAGS---VSRI--T-------RHTFAMTPSVGP 102 (200)
Q Consensus 39 ~lIl~PTRELa~Qi~~~~~--~~l--~~~~~~gg~~~~~~~~~~~~~~~~T---Pgrl--~-------~~~~v~d~~~~D 102 (200)
+||||||+||+.|-.+.+. ... .+....||....+ . ..+.++| -.|- . ...+|+ |
T Consensus 83 ~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~-----D 153 (442)
T COG1061 83 TLVLVPTKELLDQWAEALKKFLLLNDEIGIYGGGEKELE---P-AKVTVATVQTLARRQLLDEFLGNEFGLIIF-----D 153 (442)
T ss_pred EEEEECcHHHHHHHHHHHHHhcCCccccceecCceeccC---C-CcEEEEEhHHHhhhhhhhhhcccccCEEEE-----E
Confidence 9999999999999976665 333 2344444443311 1 1122322 2221 0 122333 7
Q ss_pred hhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCc
Q psy13288 103 IVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFP 139 (200)
Q Consensus 103 EAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~ 139 (200)
|||++-...|.... . .+.. ..-. -+|||.+
T Consensus 154 E~Hh~~a~~~~~~~---~-~~~~---~~~~LGLTATp~ 184 (442)
T COG1061 154 EVHHLPAPSYRRIL---E-LLSA---AYPRLGLTATPE 184 (442)
T ss_pred ccccCCcHHHHHHH---H-hhhc---ccceeeeccCce
Confidence 78999988776554 2 2222 1216 7799954
No 90
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.24 E-value=0.0013 Score=61.59 Aligned_cols=63 Identities=8% Similarity=-0.056 Sum_probs=47.7
Q ss_pred HHhHhhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh--c------CCcEEEEeCCccc
Q psy13288 9 SILLILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK--V------NLPLYVESQGTSK 71 (200)
Q Consensus 9 ~i~~~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~--~------~l~~~~~~gg~~~ 71 (200)
.+..+-.|.++|++|+.|.........+.++||.+||+||+.|+.+.+. . .+++.++.|+.+.
T Consensus 19 lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkGr~nY 89 (636)
T TIGR03117 19 GMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPGSQEF 89 (636)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEECCccc
Confidence 3455677899999999998432222235799999999999999998776 2 4667777888765
No 91
>KOG0951|consensus
Probab=95.56 E-value=0.11 Score=51.91 Aligned_cols=158 Identities=8% Similarity=0.095 Sum_probs=88.4
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccc-ccCCCCceeeecccccee--------------eeee
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKF-RSFGKGDIFNAGSVSRIT--------------RHTF 94 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~-~~~~~~~~~~~~TPgrl~--------------~~~~ 94 (200)
...+.+-++|..-|++-.-..+. .+++|.-.+|..+.- .++...+++ ++||-+-= ++.+
T Consensus 363 ~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVI-V~TPEK~DiITRk~gdraY~qlvrLl 441 (1674)
T KOG0951|consen 363 APFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVI-VTTPEKWDIITRKSGDRAYEQLVRLL 441 (1674)
T ss_pred ccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhhcceeE-EeccchhhhhhcccCchhHHHHHHHH
Confidence 45589999999999987776665 788888888775532 234455555 79996441 1222
Q ss_pred eecCCCCChhhccccccchhhhhc-HHHHHhhC---CCCcEE-EEEeeCchhHHHHHHHhCCCCeEE-Eeccccccccce
Q psy13288 95 AMTPSVGPIVDRKFGQIFNGQILV-PKHVLRSL---EPKTKV-SAIATFPLTVKNFMEKHLKDPYEI-NLMEELTLKGVT 168 (200)
Q Consensus 95 v~d~~~~DEAD~ll~~~f~~~i~~-i~~i~~~l---~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i-~v~~~~~~~~i~ 168 (200)
++ ||.|.+-|. -.+-++. +-+.+++. -..... -.|||+|. -.+++.-..-++.-+ ..+..--+--++
T Consensus 442 II-----DEIHLLhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPN-y~DV~~Fl~v~~~glf~fd~syRpvPL~ 514 (1674)
T KOG0951|consen 442 II-----DEIHLLHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPN-YEDVASFLRVDPEGLFYFDSSYRPVPLK 514 (1674)
T ss_pred hh-----hhhhhcccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCc-hhhhHHHhccCcccccccCcccCcCCcc
Confidence 33 555655442 2222200 12333322 224556 78999983 233333222233211 223223334589
Q ss_pred EEEEEccccc--HH-H-----HHHHHHhhCCCCeEEEEeC
Q psy13288 169 QYYAFVQERQ--KV-H-----CLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 169 q~~i~~~~~~--K~-~-----~L~~ll~~~~~~k~iIF~n 200 (200)
|.|+-+.+.+ |. . +-.+.++....+|++|||.
T Consensus 515 qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVH 554 (1674)
T KOG0951|consen 515 QQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVH 554 (1674)
T ss_pred ceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 9999887654 22 2 2234555556689999984
No 92
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=95.40 E-value=0.011 Score=56.04 Aligned_cols=43 Identities=14% Similarity=-0.003 Sum_probs=29.1
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK 57 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~ 57 (200)
+|+|+|+.+..-..++......+++|+|+|++||..|+.+.++
T Consensus 272 TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 272 QGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred cCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHH
Confidence 3455554332222222234557899999999999999999998
No 93
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=95.28 E-value=0.17 Score=46.05 Aligned_cols=132 Identities=12% Similarity=0.141 Sum_probs=75.9
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh--cCC---cEEEEeCCcccc-cc--CCCCceeeecccccee------------eeee
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK--VNL---PLYVESQGTSKF-RS--FGKGDIFNAGSVSRIT------------RHTF 94 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~--~~l---~~~~~~gg~~~~-~~--~~~~~~~~~~TPgrl~------------~~~~ 94 (200)
.+ .+|+++||+-|+.|=.+.+. .++ .++.+.|-..-. |. ..+..+. ++||--+. ..++
T Consensus 58 ~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~~kVf-vaTPQvveNDl~~Grid~~dv~~l 135 (542)
T COG1111 58 GG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKKKVF-VATPQVVENDLKAGRIDLDDVSLL 135 (542)
T ss_pred CC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhhCCEE-EeccHHHHhHHhcCccChHHceEE
Confidence 44 89999999999999988888 444 566777765431 11 1122333 58884443 2223
Q ss_pred eecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCc---hhHHHHHHHhCCCCeEEEeccc----ccccc
Q psy13288 95 AMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFP---LTVKNFMEKHLKDPYEINLMEE----LTLKG 166 (200)
Q Consensus 95 v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~---~~v~~~~~~~l~~~~~i~v~~~----~~~~~ 166 (200)
|. |||||--...-.-.+ .+..++. .++.-+ -.+||=- +.++++++..--+-+.+...+. .-...
T Consensus 136 if-----DEAHRAvGnyAYv~V--a~~y~~~-~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~ 207 (542)
T COG1111 136 IF-----DEAHRAVGNYAYVFV--AKEYLRS-AKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKK 207 (542)
T ss_pred Ee-----chhhhccCcchHHHH--HHHHHHh-ccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhcc
Confidence 33 788998876544443 2444443 345566 7799863 4455555554334444443311 22344
Q ss_pred ceEEEEEccc
Q psy13288 167 VTQYYAFVQE 176 (200)
Q Consensus 167 i~q~~i~~~~ 176 (200)
++-.++.|+-
T Consensus 208 ~kve~ikV~l 217 (542)
T COG1111 208 IKVEWIKVDL 217 (542)
T ss_pred ceeEEEeccC
Confidence 6666677664
No 94
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=95.09 E-value=0.14 Score=50.54 Aligned_cols=113 Identities=11% Similarity=-0.049 Sum_probs=72.4
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh-cCCc----EEEEeCCccccccCCCCceee--ecccccee-------------eeee
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK-VNLP----LYVESQGTSKFRSFGKGDIFN--AGSVSRIT-------------RHTF 94 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~-~~l~----~~~~~gg~~~~~~~~~~~~~~--~~TPgrl~-------------~~~~ 94 (200)
++-+++-.+|.+.|..|.+..+. .--. +.+.+|..++ .++..- ..| -++ +..+
T Consensus 161 ~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~I-----N~~A~clvMTT--EILRnMlyrg~~~~~~i~~V 233 (1041)
T COG4581 161 DGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSI-----NPDAPCLVMTT--EILRNMLYRGSESLRDIEWV 233 (1041)
T ss_pred cCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceecceee-----CCCCceEEeeH--HHHHHHhccCcccccccceE
Confidence 34459999999999999999998 2222 3666777666 333221 111 111 3344
Q ss_pred eecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCc--hhHHHHHHHhCCCCeEEEecccc
Q psy13288 95 AMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFP--LTVKNFMEKHLKDPYEINLMEEL 162 (200)
Q Consensus 95 v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~--~~v~~~~~~~l~~~~~i~v~~~~ 162 (200)
|+ ||.|.|=|.+-.--. +.++-.+|+..|. ++|||.| .+........-..|..+...+..
T Consensus 234 iF-----DEvHyi~D~eRG~VW---EE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~R 296 (1041)
T COG4581 234 VF-----DEVHYIGDRERGVVW---EEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHR 296 (1041)
T ss_pred EE-----EeeeeccccccchhH---HHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCC
Confidence 45 666888776555555 7788899999999 9999996 34444444444566666544333
No 95
>KOG2340|consensus
Probab=94.68 E-value=0.015 Score=53.13 Aligned_cols=51 Identities=24% Similarity=0.182 Sum_probs=37.2
Q ss_pred hhHHhHhhhcCccEEEecCc-c----------cccccCCCCeeEEEEcCCHHHHHHHHHHhh
Q psy13288 7 EHSILLILKKSDFTLKISCP-R----------SQLTVQELSLRLVMCVIFREVLLKISSWEK 57 (200)
Q Consensus 7 ~~~i~~~l~~~~~~l~~~~p-~----------~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~ 57 (200)
+|+|--.+|.+|-+|.=... + +-.+..-..|.+||+|||||-|..|-+.+-
T Consensus 253 lH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRpkVLivvpfRe~A~riVn~li 314 (698)
T KOG2340|consen 253 LHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRPKVLIVVPFRESAYRIVNLLI 314 (698)
T ss_pred HHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCceEEEEecchHHHHHHHHHHH
Confidence 57777778888777764333 2 223445578999999999999998877665
No 96
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=94.24 E-value=0.015 Score=56.61 Aligned_cols=63 Identities=10% Similarity=0.001 Sum_probs=47.2
Q ss_pred hhHHhHhhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHH-Hhh-------cCCcEEEEeCCccc
Q psy13288 7 EHSILLILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISS-WEK-------VNLPLYVESQGTSK 71 (200)
Q Consensus 7 ~~~i~~~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~-~~~-------~~l~~~~~~gg~~~ 71 (200)
.+.+..+-.|.|+|++|+.|...... ++-+++|.+||++|..|+.. .+. ..+++.++.|+.+.
T Consensus 265 ~~~~~eA~TG~GKT~ayLlp~~~~~~--~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~y 335 (850)
T TIGR01407 265 EKSLIEAPTGTGKTLGYLLPALYYAI--TEKPVVISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNY 335 (850)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhh
Confidence 34556778899999999999843322 23489999999999999864 343 34888888888764
No 97
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=93.72 E-value=0.095 Score=40.26 Aligned_cols=23 Identities=22% Similarity=0.093 Sum_probs=19.7
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK 57 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~ 57 (200)
.+.+.|||.|||-+|.-+.+.++
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~ 54 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALK 54 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTT
T ss_pred ccCeEEEecccHHHHHHHHHHHh
Confidence 67899999999999999999998
No 98
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=92.96 E-value=0.29 Score=47.01 Aligned_cols=136 Identities=16% Similarity=0.071 Sum_probs=76.8
Q ss_pred hhcCccEEEecCcccccc-c-CCCCeeEEEEcCCHHHHHHHHHHhh--cCC-cEEEE-eCCccccccCCCCce---eeec
Q psy13288 14 LKKSDFTLKISCPRSQLT-V-QELSLRLVMCVIFREVLLKISSWEK--VNL-PLYVE-SQGTSKFRSFGKGDI---FNAG 84 (200)
Q Consensus 14 l~~~~~~l~~~~p~~~~~-~-~~~~~~~lIl~PTRELa~Qi~~~~~--~~l-~~~~~-~gg~~~~~~~~~~~~---~~~~ 84 (200)
=.|.|+|.+.+.+..... . .....+.+-+.|+|-+..++++-++ .+. .+... ..|.....-+...+. ..+.
T Consensus 222 PTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~ 301 (733)
T COG1203 222 PTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLT 301 (733)
T ss_pred CCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhccccccceeEE
Confidence 346777777777764322 2 2378899999999999999999888 111 11111 233332221111111 1111
Q ss_pred cccce---------------e----------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCC-CcEE
Q psy13288 85 SVSRI---------------T----------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEP-KTKV 132 (200)
Q Consensus 85 TPgrl---------------~----------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~-~~Q~ 132 (200)
|+.+. . ...+| .||+|.+-+.....-+ ..++..+.. +..+
T Consensus 302 ~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vI-----lDE~h~~~~~~~~~~l---~~~i~~l~~~g~~i 373 (733)
T COG1203 302 TNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVI-----LDEVHLYADETMLAAL---LALLEALAEAGVPV 373 (733)
T ss_pred ecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchh-----hccHHhhcccchHHHH---HHHHHHHHhCCCCE
Confidence 11111 1 11122 2777777666433333 444444432 4567
Q ss_pred -EEEeeCchhHHHHHHHhCCCCeEEE
Q psy13288 133 -SAIATFPLTVKNFMEKHLKDPYEIN 157 (200)
Q Consensus 133 -lfSAT~~~~v~~~~~~~l~~~~~i~ 157 (200)
+.|||+|...++.....+.+...+.
T Consensus 374 ll~SATlP~~~~~~l~~~~~~~~~~~ 399 (733)
T COG1203 374 LLMSATLPPFLKEKLKKALGKGREVV 399 (733)
T ss_pred EEEecCCCHHHHHHHHHHHhccccee
Confidence 9999999999998888876655543
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=92.89 E-value=2.6 Score=37.15 Aligned_cols=152 Identities=11% Similarity=0.043 Sum_probs=86.9
Q ss_pred CCCeeEEEEcCCHHHHHHHHHHhh---cCCcEEEEeCCccccccCCCCceeeecccccee-----eeeeeecCCCCChhh
Q psy13288 34 ELSLRLVMCVIFREVLLKISSWEK---VNLPLYVESQGTSKFRSFGKGDIFNAGSVSRIT-----RHTFAMTPSVGPIVD 105 (200)
Q Consensus 34 ~~~~~~lIl~PTRELa~Qi~~~~~---~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~-----~~~~v~d~~~~DEAD 105 (200)
+++-++.|-+|--+-+.-++.-++ .+..+.+++|+..-+ + ..+.+ ++|.-.++ ...+++ ||+|
T Consensus 142 ~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~--f-r~plv-VaTtHQLlrFk~aFD~liI-----DEVD 212 (441)
T COG4098 142 NQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSY--F-RAPLV-VATTHQLLRFKQAFDLLII-----DEVD 212 (441)
T ss_pred hcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchh--c-cccEE-EEehHHHHHHHhhccEEEE-----eccc
Confidence 457788889999888888888887 668888999887641 1 23433 67776666 344455 5557
Q ss_pred ccccccchhhhhcHHHHHh-hCCCCcEE-EEEeeCchhHHHHHHHhCCCCeEEEec-cccccccceEEEEEcccccHHH-
Q psy13288 106 RKFGQIFNGQILVPKHVLR-SLEPKTKV-SAIATFPLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVH- 181 (200)
Q Consensus 106 ~ll~~~f~~~i~~i~~i~~-~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~- 181 (200)
.. -|.++- .+..-.+ ...++.-+ ..|||=++++++-+... +-..+.+. ..-..+-..=.|+.+..-+|..
T Consensus 213 AF---P~~~d~-~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~ 286 (441)
T COG4098 213 AF---PFSDDQ-SLQYAVKKARKKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQ 286 (441)
T ss_pred cc---cccCCH-HHHHHHHHhhcccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhh
Confidence 64 122221 1122232 33345566 88999987776644432 22333443 1111112223444454433222
Q ss_pred ------HHHHHHhhC--CCCeEEEEeC
Q psy13288 182 ------CLNTLFSKC--CSLLGVFTCT 200 (200)
Q Consensus 182 ------~L~~ll~~~--~~~k~iIF~n 200 (200)
.|...+++. ...+++||++
T Consensus 287 r~kl~~kl~~~lekq~~~~~P~liF~p 313 (441)
T COG4098 287 RNKLPLKLKRWLEKQRKTGRPVLIFFP 313 (441)
T ss_pred hccCCHHHHHHHHHHHhcCCcEEEEec
Confidence 677777765 4468999975
No 100
>PRK14873 primosome assembly protein PriA; Provisional
Probab=92.53 E-value=0.42 Score=45.40 Aligned_cols=129 Identities=12% Similarity=0.053 Sum_probs=73.8
Q ss_pred hHhhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh--cC-CcEEEEeCCccc------ccc--CCCCc
Q psy13288 11 LLILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK--VN-LPLYVESQGTSK------FRS--FGKGD 79 (200)
Q Consensus 11 ~~~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~--~~-l~~~~~~gg~~~------~~~--~~~~~ 79 (200)
..++.||+||-.|..-..+.-. .+=|+|||+|...|+.|+.+-++ .+ -.+....++.+- +.. .|+..
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l~--~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~ 242 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATLR--AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR 242 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHHH--cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc
Confidence 3334577777766654433222 24479999999999999999999 43 556666655432 111 12223
Q ss_pred eeeecccccee-----eeeeeecCCCCChhhccccccchhhhhcHHHH--HhhCCCCcEE-EEEeeCchhHHHHHH
Q psy13288 80 IFNAGSVSRIT-----RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHV--LRSLEPKTKV-SAIATFPLTVKNFME 147 (200)
Q Consensus 80 ~~~~~TPgrl~-----~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i--~~~l~~~~Q~-lfSAT~~~~v~~~~~ 147 (200)
+ .+||-+-+. ...+|+| ||.|.-+.++-..-. +..++ ++.--.+..+ |.|||=+-+....+.
T Consensus 243 I-ViGtRSAvFaP~~~LgLIIvd----EEhd~sykq~~~p~y-haRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~ 312 (665)
T PRK14873 243 V-VVGTRSAVFAPVEDLGLVAIW----DDGDDLLAEPRAPYP-HAREVALLRAHQHGCALLIGGHARTAEAQALVE 312 (665)
T ss_pred E-EEEcceeEEeccCCCCEEEEE----cCCchhhcCCCCCCc-cHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHh
Confidence 3 368855444 3556666 466766654311110 11222 2322356778 999997755554443
No 101
>KOG0354|consensus
Probab=91.28 E-value=0.73 Score=44.06 Aligned_cols=108 Identities=8% Similarity=-0.028 Sum_probs=63.8
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh---cCCcEEEEeCCccccccCC----CCceeeecccccee-------------eeee
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK---VNLPLYVESQGTSKFRSFG----KGDIFNAGSVSRIT-------------RHTF 94 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~---~~l~~~~~~gg~~~~~~~~----~~~~~~~~TPgrl~-------------~~~~ 94 (200)
..-++|+++|||-|+.|=...++ .+-.+-...||+.-.+.++ ..++. +.||--+. ..+.
T Consensus 105 p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~~l~~~~~~~~r~~i~~s~~vf-f~TpQil~ndL~~~~~~~ls~fs~i 183 (746)
T KOG0354|consen 105 PKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTGQLGDTVPRSNRGEIVASKRVF-FRTPQILENDLKSGLHDELSDFSLI 183 (746)
T ss_pred CcceEEEeeCCchHHHHHHHHHhhccCcccceeeccCccCCCchhhhhcccceE-EeChHhhhhhcccccccccceEEEE
Confidence 34789999999999988777777 3334444555543322211 11221 35553222 1223
Q ss_pred eecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhC
Q psy13288 95 AMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHL 150 (200)
Q Consensus 95 v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l 150 (200)
|+ ||||+--...-...+ +...+..-..+.|+ -.+||...+..++.+-..
T Consensus 184 v~-----DE~Hra~kn~~Y~~V--mr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~ 233 (746)
T KOG0354|consen 184 VF-----DECHRTSKNHPYNNI--MREYLDLKNQGNQILGLTASPGSKLEQVQNVID 233 (746)
T ss_pred EE-----cccccccccccHHHH--HHHHHHhhhccccEEEEecCCCccHHHHHHHHH
Confidence 33 788999887655554 24555444445599 899999766666555443
No 102
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.17 E-value=1.7 Score=41.79 Aligned_cols=175 Identities=12% Similarity=0.001 Sum_probs=95.2
Q ss_pred HhhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh--cCCcEEEEeCCccc------cccCC-CCceee
Q psy13288 12 LILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK--VNLPLYVESQGTSK------FRSFG-KGDIFN 82 (200)
Q Consensus 12 ~~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~--~~l~~~~~~gg~~~------~~~~~-~~~~~~ 82 (200)
..-.||++|=.|.--..+.. ..+-|+|||+|--.|--|+.+-|+ .+.++.+...|-+- ++... .+-.+.
T Consensus 223 ~GvTGSGKTEvYl~~i~~~L--~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vV 300 (730)
T COG1198 223 DGVTGSGKTEVYLEAIAKVL--AQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVV 300 (730)
T ss_pred eCCCCCcHHHHHHHHHHHHH--HcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEE
Confidence 34445666654443222221 345689999999999999999999 66777666666442 11211 122222
Q ss_pred ecccccee-----eeeeeecCCCCChhhcccccc-----chhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCC
Q psy13288 83 AGSVSRIT-----RHTFAMTPSVGPIVDRKFGQI-----FNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLK 151 (200)
Q Consensus 83 ~~TPgrl~-----~~~~v~d~~~~DEAD~ll~~~-----f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~ 151 (200)
+||=.-+. ....|+|| |-|.-..+. ..-++ .+++.--.+.++ |-|||=+ ++...+..-.
T Consensus 301 IGtRSAlF~Pf~~LGLIIvDE----EHD~sYKq~~~prYhARdv----A~~Ra~~~~~pvvLgSATPS--LES~~~~~~g 370 (730)
T COG1198 301 IGTRSALFLPFKNLGLIIVDE----EHDSSYKQEDGPRYHARDV----AVLRAKKENAPVVLGSATPS--LESYANAESG 370 (730)
T ss_pred EEechhhcCchhhccEEEEec----cccccccCCcCCCcCHHHH----HHHHHHHhCCCEEEecCCCC--HHHHHhhhcC
Confidence 57633332 46677876 566666532 22232 334433457889 9999954 5555544322
Q ss_pred CCeEEEec---cccccccceEEEEEccccc-HH-----HHHHHHHh-hC-CCCeEEEEeC
Q psy13288 152 DPYEINLM---EELTLKGVTQYYAFVQERQ-KV-----HCLNTLFS-KC-CSLLGVFTCT 200 (200)
Q Consensus 152 ~~~~i~v~---~~~~~~~i~q~~i~~~~~~-K~-----~~L~~ll~-~~-~~~k~iIF~n 200 (200)
....+.+. .....+ +..++.+..+. +. ..|.+.++ .+ ...|+|+|.|
T Consensus 371 ~y~~~~L~~R~~~a~~p--~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llfln 428 (730)
T COG1198 371 KYKLLRLTNRAGRARLP--RVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLN 428 (730)
T ss_pred ceEEEEccccccccCCC--cceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEc
Confidence 33444444 222223 33444444332 22 33444443 22 5679999987
No 103
>KOG0947|consensus
Probab=86.71 E-value=4.6 Score=39.98 Aligned_cols=125 Identities=10% Similarity=-0.059 Sum_probs=76.7
Q ss_pred hHHhHhhhcCccEEEecCccccc--------ccCCCCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccccccCCCC
Q psy13288 8 HSILLILKKSDFTLKISCPRSQL--------TVQELSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSKFRSFGKG 78 (200)
Q Consensus 8 ~~i~~~l~~~~~~l~~~~p~~~~--------~~~~~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~~~~~~~~ 78 (200)
.+|-...+++..-++-+...-+- ..+.+..|++--+|-+.|..|=++.|+ +-=.+.+++|...+ ..
T Consensus 304 ~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~DvgLlTGDvqi-----nP 378 (1248)
T KOG0947|consen 304 EAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVGLLTGDVQI-----NP 378 (1248)
T ss_pred HHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccceeecceee-----CC
Confidence 45666666666666655444321 124578999999999999999999999 21122367777766 33
Q ss_pred ce--eeeccccceeee-----eee---ecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhH
Q psy13288 79 DI--FNAGSVSRITRH-----TFA---MTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTV 142 (200)
Q Consensus 79 ~~--~~~~TPgrl~~~-----~~v---~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v 142 (200)
+. ...+| -++.. ..+ ++..+.||+|.+=|..-.--. ++++-.+|++.+. +.|||.|...
T Consensus 379 eAsCLIMTT--EILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVW---EEViIMlP~HV~~IlLSATVPN~~ 448 (1248)
T KOG0947|consen 379 EASCLIMTT--EILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVW---EEVIIMLPRHVNFILLSATVPNTL 448 (1248)
T ss_pred CcceEeehH--HHHHHHHhcccchhhccceEEEeeeeecccccccccc---eeeeeeccccceEEEEeccCCChH
Confidence 32 11122 11100 000 112223777888776544444 6667788999999 9999997544
No 104
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=86.38 E-value=2.4 Score=42.08 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=21.3
Q ss_pred CCCeeEEEEcCCHHHHHHHHHHhh
Q psy13288 34 ELSLRLVMCVIFREVLLKISSWEK 57 (200)
Q Consensus 34 ~~~~~~lIl~PTRELa~Qi~~~~~ 57 (200)
.++-++++|+||+-|+.|+.+-++
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHH
Confidence 345789999999999999999888
No 105
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=85.49 E-value=0.59 Score=45.45 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=46.2
Q ss_pred HhHhhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccc
Q psy13288 10 ILLILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSK 71 (200)
Q Consensus 10 i~~~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~ 71 (200)
|...-.|+|+||....|..- ....+-.+-|++++.+||.+-++++. .++++.++.++.+.
T Consensus 93 IaEm~TGEGKTL~a~l~ayl--~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~ 157 (870)
T CHL00122 93 IAEMKTGEGKTLVATLPAYL--NALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSS 157 (870)
T ss_pred cccccCCCCchHHHHHHHHH--HHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCCh
Confidence 44455678999988887731 11235568999999999999999998 89999998887663
No 106
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=84.71 E-value=16 Score=35.84 Aligned_cols=182 Identities=12% Similarity=0.009 Sum_probs=88.7
Q ss_pred cchhhHHhHhhhcCccEEEecCcccc---------cccCCCCeeEEEEcCCHHHHH-H----HHHHhh--cCCcEEEEeC
Q psy13288 4 TSFEHSILLILKKSDFTLKISCPRSQ---------LTVQELSLRLVMCVIFREVLL-K----ISSWEK--VNLPLYVESQ 67 (200)
Q Consensus 4 ~~~~~~i~~~l~~~~~~l~~~~p~~~---------~~~~~~~~~~lIl~PTRELa~-Q----i~~~~~--~~l~~~~~~g 67 (200)
++.+.-|..++.....++-...+.+- .+........|+++==|.||. - +.+.+. .+=.|...+-
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iR 131 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIR 131 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEE
Confidence 34455566666666666665555531 111112233444444444442 2 333333 2223333333
Q ss_pred CccccccCCCCceeeecccccee-----------eeeeeecCCCCChhh-ccccccchhhhhcHHHHHhhCCCCcEE-EE
Q psy13288 68 GTSKFRSFGKGDIFNAGSVSRIT-----------RHTFAMTPSVGPIVD-RKFGQIFNGQILVPKHVLRSLEPKTKV-SA 134 (200)
Q Consensus 68 g~~~~~~~~~~~~~~~~TPgrl~-----------~~~~v~d~~~~DEAD-~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lf 134 (200)
..+. .+..-.+++-|-|=|+ ..++++ |||| |-++-+|.=-+ +.+++...++.-.+ +.
T Consensus 132 fe~~---~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIi-----DEaHERSl~tDilLgl--lk~~~~~rr~DLKiIim 201 (845)
T COG1643 132 FESK---VSPRTRIKVMTDGILLREIQNDPLLSGYSVVII-----DEAHERSLNTDILLGL--LKDLLARRRDDLKLIIM 201 (845)
T ss_pred eecc---CCCCceeEEeccHHHHHHHhhCcccccCCEEEE-----cchhhhhHHHHHHHHH--HHHHHhhcCCCceEEEE
Confidence 3333 1233344456777555 344555 5556 44554444333 46667777766666 89
Q ss_pred EeeCchhHHHHHHHhCCCCeEEEeccccccccceEEEEEcccccH--HHHHHHHHh---hCCCCeEEEEeC
Q psy13288 135 IATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQK--VHCLNTLFS---KCCSLLGVFTCT 200 (200)
Q Consensus 135 SAT~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~q~~i~~~~~~K--~~~L~~ll~---~~~~~k~iIF~n 200 (200)
|||+.. +++ ..|++++-.+.+.... --|+-+|..-...+. ...+...+. ....|..+||.+
T Consensus 202 SATld~--~rf-s~~f~~apvi~i~GR~--fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLp 267 (845)
T COG1643 202 SATLDA--ERF-SAYFGNAPVIEIEGRT--YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLP 267 (845)
T ss_pred ecccCH--HHH-HHHcCCCCEEEecCCc--cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECC
Confidence 999973 333 4566765555554111 124556644332222 223333332 335788899963
No 107
>KOG0351|consensus
Probab=83.71 E-value=21 Score=35.57 Aligned_cols=180 Identities=12% Similarity=0.088 Sum_probs=101.7
Q ss_pred hhHHhHhhhcCccEEEe----------cCcccccccCCCCeeEEEEcCCHHHHH-HHHHHhhcCCcEEEEeCCccc----
Q psy13288 7 EHSILLILKKSDFTLKI----------SCPRSQLTVQELSLRLVMCVIFREVLL-KISSWEKVNLPLYVESQGTSK---- 71 (200)
Q Consensus 7 ~~~i~~~l~~~~~~l~~----------~~p~~~~~~~~~~~~~lIl~PTRELa~-Qi~~~~~~~l~~~~~~gg~~~---- 71 (200)
+.+|-..|.|+|..+.+ -+|+-- ...-.|||.|=.-|.. |+....+.++....+.++...
T Consensus 270 ~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l-----~~gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~ 344 (941)
T KOG0351|consen 270 LEAINATLSGKDCFVLMPTGGGKSLCYQLPALL-----LGGVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERL 344 (941)
T ss_pred HHHHHHHHcCCceEEEeecCCceeeEeeccccc-----cCCceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHH
Confidence 34555666666666554 344422 1226788999998874 555554477877777666443
Q ss_pred --cccCCCC-ceeee--cccccee-----------------eeeeeecCCCCChhhcccc--ccchhhhhcHHHHHhhCC
Q psy13288 72 --FRSFGKG-DIFNA--GSVSRIT-----------------RHTFAMTPSVGPIVDRKFG--QIFNGQILVPKHVLRSLE 127 (200)
Q Consensus 72 --~~~~~~~-~~~~~--~TPgrl~-----------------~~~~v~d~~~~DEAD~ll~--~~f~~~i~~i~~i~~~l~ 127 (200)
+..+..+ .++++ -||-++. ...+|+ ||||..-. .+|.++...+..+..+.|
T Consensus 345 ~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vI-----DEAHCVSqWgHdFRp~Yk~l~~l~~~~~ 419 (941)
T KOG0351|consen 345 AILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVI-----DEAHCVSQWGHDFRPSYKRLGLLRIRFP 419 (941)
T ss_pred HHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEe-----cHHHHhhhhcccccHHHHHHHHHHhhCC
Confidence 1111111 12223 3443333 234455 77899965 579999866677777776
Q ss_pred CCcEE-EEEeeCchhHHHHHHHh--CCCCeEEEeccccccccceEEEEEccc-ccHHHHHHHHHhhC-CCCeEEEEeC
Q psy13288 128 PKTKV-SAIATFPLTVKNFMEKH--LKDPYEINLMEELTLKGVTQYYAFVQE-RQKVHCLNTLFSKC-CSLLGVFTCT 200 (200)
Q Consensus 128 ~~~Q~-lfSAT~~~~v~~~~~~~--l~~~~~i~v~~~~~~~~i~q~~i~~~~-~~K~~~L~~ll~~~-~~~k~iIF~n 200 (200)
. .-+ ..+||-+..|++-+-.. +++|..+. ..-..+|+. |.+..+. .+....+....+.. ..+.+||+|.
T Consensus 420 ~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~--~sfnR~NL~-yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~ 493 (941)
T KOG0351|consen 420 G-VPFIALTATATERVREDVIRSLGLRNPELFK--SSFNRPNLK-YEVSPKTDKDALLDILEESKLRHPDQSGIIYCL 493 (941)
T ss_pred C-CCeEEeehhccHHHHHHHHHHhCCCCcceec--ccCCCCCce-EEEEeccCccchHHHHHHhhhcCCCCCeEEEeC
Confidence 5 666 78999999998844444 55777553 222233333 3232232 23333334444433 5567899984
No 108
>KOG0948|consensus
Probab=83.25 E-value=4.4 Score=39.18 Aligned_cols=110 Identities=8% Similarity=-0.031 Sum_probs=64.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHhhcC-CcEEEEeCCccccccCCCCcee--eeccc-cc--------ee--eeeeeecCCCC
Q psy13288 36 SLRLVMCVIFREVLLKISSWEKVN-LPLYVESQGTSKFRSFGKGDIF--NAGSV-SR--------IT--RHTFAMTPSVG 101 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~~~-l~~~~~~gg~~~~~~~~~~~~~--~~~TP-gr--------l~--~~~~v~d~~~~ 101 (200)
.-|+|--.|-+.|..|=++++... -.+.+.+|...+ ..+.- ..+|- -| ++ +..++.
T Consensus 172 kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTI-----nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIF----- 241 (1041)
T KOG0948|consen 172 KQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTI-----NPDASCLVMTTEILRSMLYRGSEVMREVAWVIF----- 241 (1041)
T ss_pred cCeEEeeChhhhhcchhHHHHHHHhcccceeecceee-----CCCCceeeeHHHHHHHHHhccchHhheeeeEEe-----
Confidence 457899999999999999999822 124445555554 22211 00110 00 00 334444
Q ss_pred ChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHH--HHHHHhCCCCeEEEe
Q psy13288 102 PIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVK--NFMEKHLKDPYEINL 158 (200)
Q Consensus 102 DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~--~~~~~~l~~~~~i~v 158 (200)
||.|-|-|..-.--+ ++-+-.+|++... +.|||+|.-.+ +.+...-+.|-++.-
T Consensus 242 DEIHYMRDkERGVVW---EETIIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVY 298 (1041)
T KOG0948|consen 242 DEIHYMRDKERGVVW---EETIILLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVY 298 (1041)
T ss_pred eeehhccccccceee---eeeEEeccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEe
Confidence 667999886432222 2223367888888 99999985433 344555678877643
No 109
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=83.16 E-value=5.3 Score=32.99 Aligned_cols=88 Identities=11% Similarity=0.017 Sum_probs=44.3
Q ss_pred eEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCc-c---ccccCCCCceeeecccccee---------------eee
Q psy13288 38 RLVMCVIFREVLLKISSWEK-----VNLPLYVESQGT-S---KFRSFGKGDIFNAGSVSRIT---------------RHT 93 (200)
Q Consensus 38 ~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~-~---~~~~~~~~~~~~~~TPgrl~---------------~~~ 93 (200)
.+||++|+ .+..|=.+++. ..+++....|+. . ........++. +.|...+. ...
T Consensus 60 ~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vv-i~ty~~~~~~~~~~~~~~l~~~~~~~ 137 (299)
T PF00176_consen 60 KTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVV-ITTYETLRKARKKKDKEDLKQIKWDR 137 (299)
T ss_dssp -EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEE-EEEHHHHH--TSTHTTHHHHTSEEEE
T ss_pred ceeEeecc-chhhhhhhhhccccccccccccccccccccccccccccccceee-ecccccccccccccccccccccccee
Confidence 49999999 66677666666 257777666665 1 11112223332 33333332 344
Q ss_pred eeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeC
Q psy13288 94 FAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATF 138 (200)
Q Consensus 94 ~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~ 138 (200)
+|+ |||+.+= +..... ...+..+. .... ++|||-
T Consensus 138 vIv-----DEaH~~k--~~~s~~---~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 138 VIV-----DEAHRLK--NKDSKR---YKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp EEE-----TTGGGGT--TTTSHH---HHHHHCCC-ECEEEEE-SS-
T ss_pred EEE-----ecccccc--cccccc---cccccccc-cceEEeecccc
Confidence 455 6778882 222222 44455564 4555 889993
No 110
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=81.80 E-value=0.83 Score=43.74 Aligned_cols=55 Identities=9% Similarity=0.037 Sum_probs=43.2
Q ss_pred hhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcc
Q psy13288 14 LKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTS 70 (200)
Q Consensus 14 l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~ 70 (200)
-.|+++||....|.... ...+-++-|++||--||.|=++++. .++++.++.++.+
T Consensus 99 ~TGEGKTLvA~l~a~l~--AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~ 158 (764)
T PRK12326 99 ATGEGKTLAGAIAAAGY--ALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEEST 158 (764)
T ss_pred cCCCCHHHHHHHHHHHH--HHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCC
Confidence 34688888777766332 2456679999999999999999988 7999999888765
No 111
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=74.41 E-value=21 Score=36.06 Aligned_cols=110 Identities=19% Similarity=0.125 Sum_probs=69.7
Q ss_pred CCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccc--cc------cCCCCceeeecccccee--------ee
Q psy13288 34 ELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSK--FR------SFGKGDIFNAGSVSRIT--------RH 92 (200)
Q Consensus 34 ~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~--~~------~~~~~~~~~~~TPgrl~--------~~ 92 (200)
.++-|+.|||||-=||.|=++.|+ .++++..++-=.+. .+ ..|+-+|+ +||= ||+ ..
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIv-IGTH-rLL~kdv~FkdLG 718 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIV-IGTH-RLLSKDVKFKDLG 718 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEE-Eech-HhhCCCcEEecCC
Confidence 367899999999999999999999 45555544321111 00 12344544 5774 444 34
Q ss_pred eeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCCeEEEe
Q psy13288 93 TFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDPYEINL 158 (200)
Q Consensus 93 ~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v 158 (200)
.+|+|| ..=|.-...+. ++.+..+.-+ =.|||=-+....++-.-++|-..|..
T Consensus 719 LlIIDE------EqRFGVk~KEk-------LK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~T 772 (1139)
T COG1197 719 LLIIDE------EQRFGVKHKEK-------LKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIAT 772 (1139)
T ss_pred eEEEec------hhhcCccHHHH-------HHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccC
Confidence 456655 23333334433 4455556667 67999878888888888888777754
No 112
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=73.74 E-value=2.2 Score=41.82 Aligned_cols=76 Identities=13% Similarity=0.027 Sum_probs=52.6
Q ss_pred HhhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccc--ccCCCCceeeec
Q psy13288 12 LILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKF--RSFGKGDIFNAG 84 (200)
Q Consensus 12 ~~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~--~~~~~~~~~~~~ 84 (200)
..-.|+|+||....|..- ....+-.+-|++++..||.+=.+++. .+++|.++.++.+.. +.....++. -|
T Consensus 104 EM~TGEGKTL~atlpayl--nAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~aY~~DIt-Yg 180 (939)
T PRK12902 104 EMKTGEGKTLVATLPSYL--NALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKNYACDIT-YA 180 (939)
T ss_pred eecCCCChhHHHHHHHHH--HhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHhcCCCeE-Ee
Confidence 344678999988877732 12234458999999999999999888 899999887765431 111234443 58
Q ss_pred ccccee
Q psy13288 85 SVSRIT 90 (200)
Q Consensus 85 TPgrl~ 90 (200)
|++.+-
T Consensus 181 Tn~e~g 186 (939)
T PRK12902 181 TNSELG 186 (939)
T ss_pred cCCccc
Confidence 888774
No 113
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=73.38 E-value=1.5 Score=42.39 Aligned_cols=59 Identities=10% Similarity=-0.035 Sum_probs=45.0
Q ss_pred HhHhhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcc
Q psy13288 10 ILLILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTS 70 (200)
Q Consensus 10 i~~~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~ 70 (200)
|...-.|+|+||....|.-. ....+-++-|++||--||.|=++++. .++++.++.|+.+
T Consensus 97 iaEm~TGEGKTLvA~l~a~l--~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~ 160 (796)
T PRK12906 97 IAEMKTGEGKTLTATLPVYL--NALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMS 160 (796)
T ss_pred cccccCCCCCcHHHHHHHHH--HHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCC
Confidence 44445678888877776632 22346679999999999999988887 7999999988754
No 114
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=71.92 E-value=1 Score=34.30 Aligned_cols=40 Identities=10% Similarity=-0.099 Sum_probs=27.7
Q ss_pred hhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh
Q psy13288 13 ILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK 57 (200)
Q Consensus 13 ~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~ 57 (200)
+-.|+|+|..+.....++.. ++++++|++.|+.|..+.++
T Consensus 32 ~~tGsGKT~~~~~~~~~l~~-----~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 32 APTGSGKTIIALALILELAR-----KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp ESTTSSHHHHHHHHHHHHHC-----EEEEEESSHHHHHHHHHHHH
T ss_pred ECCCCCcChhhhhhhhcccc-----ceeEecCHHHHHHHHHHHHH
Confidence 34456666654432223322 89999999999999999995
No 115
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=71.50 E-value=2.5 Score=41.53 Aligned_cols=76 Identities=11% Similarity=0.001 Sum_probs=52.1
Q ss_pred hHhhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccc--ccCCCCceeee
Q psy13288 11 LLILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKF--RSFGKGDIFNA 83 (200)
Q Consensus 11 ~~~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~--~~~~~~~~~~~ 83 (200)
...-.|+|+|+....|... ....+-++-|++||--||.|=++++. .++++.++.|+.+.. +.....++. .
T Consensus 100 aEM~TGEGKTLvA~l~a~l--~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~~dI~-Y 176 (913)
T PRK13103 100 AEMRTGEGKTLVGTLAVYL--NALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYAADIT-Y 176 (913)
T ss_pred ccccCCCCChHHHHHHHHH--HHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhcCCEE-E
Confidence 3444678888877776632 22356679999999999999999988 789999988775431 111123443 5
Q ss_pred ccccce
Q psy13288 84 GSVSRI 89 (200)
Q Consensus 84 ~TPgrl 89 (200)
||.+-+
T Consensus 177 GT~~e~ 182 (913)
T PRK13103 177 GTNNEF 182 (913)
T ss_pred Eccccc
Confidence 777665
No 116
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=69.35 E-value=1.5 Score=36.77 Aligned_cols=26 Identities=4% Similarity=-0.167 Sum_probs=18.2
Q ss_pred cCCCCeeEEEEcCCHHHHHHHHHHhh
Q psy13288 32 VQELSLRLVMCVIFREVLLKISSWEK 57 (200)
Q Consensus 32 ~~~~~~~~lIl~PTRELa~Qi~~~~~ 57 (200)
.....|.+||++.+=--|.=+.+.++
T Consensus 122 ~~~gsP~~lvvs~SalRa~dl~R~l~ 147 (252)
T PF14617_consen 122 KEKGSPHVLVVSSSALRAADLIRALR 147 (252)
T ss_pred cCCCCCEEEEEcchHHHHHHHHHHHH
Confidence 34568999999998665655555554
No 117
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=65.06 E-value=14 Score=36.92 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.0
Q ss_pred cHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 178 QKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 178 ~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
.|..+|..+++.....|+||||+
T Consensus 479 ~Ki~~L~~~L~~~~~~KvLVF~~ 501 (956)
T PRK04914 479 PRVEWLIDFLKSHRSEKVLVICA 501 (956)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeC
Confidence 38889999999887889999996
No 118
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=63.71 E-value=2.5 Score=41.82 Aligned_cols=63 Identities=8% Similarity=0.030 Sum_probs=47.2
Q ss_pred hhHHhHhhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHH----hh----cCCcEEEEeCCcc
Q psy13288 7 EHSILLILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSW----EK----VNLPLYVESQGTS 70 (200)
Q Consensus 7 ~~~i~~~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~----~~----~~l~~~~~~gg~~ 70 (200)
.+.+..+-.|.|+|++|+.|...... .++-+++|-++|+.|-.|+.+- ++ ..++++++-|..+
T Consensus 277 ~~~~iEA~TGtGKTlaYLlpa~~~a~-~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~~~~~~~~~~lKGr~n 347 (928)
T PRK08074 277 EHALIEAGTGTGKSLAYLLPAAYFAK-KKEEPVVISTYTIQLQQQLLEKDIPLLQKIFPFPVEAALLKGRSH 347 (928)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHhh-ccCCeEEEEcCCHHHHHHHHHhhHHHHHHHcCCCceEEEEEcccc
Confidence 45567788899999999999854332 2346799999999999998652 22 4677787777665
No 119
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=62.00 E-value=17 Score=35.44 Aligned_cols=66 Identities=11% Similarity=0.022 Sum_probs=39.3
Q ss_pred EEEeeCchhHHHHHHHhCCCCeEEEeccccccccce-EEEEEcccccHHHHHHHHHhhC--CCCeEEEEeC
Q psy13288 133 SAIATFPLTVKNFMEKHLKDPYEINLMEELTLKGVT-QYYAFVQERQKVHCLNTLFSKC--CSLLGVFTCT 200 (200)
Q Consensus 133 lfSAT~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~-q~~i~~~~~~K~~~L~~ll~~~--~~~k~iIF~n 200 (200)
-.|.|...+-.++.+.| +-..+.++.+....... .-.++++.++|..+|...+... ...++||||+
T Consensus 368 GmTGTa~t~~~e~~~~Y--~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~ 436 (790)
T PRK09200 368 GMTGTAKTEEKEFFEVY--NMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTG 436 (790)
T ss_pred ccCCCChHHHHHHHHHh--CCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 35666544444454444 22333444333322222 2356678889999999988753 5679999996
No 120
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=58.84 E-value=2.8 Score=42.31 Aligned_cols=24 Identities=13% Similarity=-0.118 Sum_probs=21.3
Q ss_pred CCCeeEEEEcCCHHHHHHHHHHhh
Q psy13288 34 ELSLRLVMCVIFREVLLKISSWEK 57 (200)
Q Consensus 34 ~~~~~~lIl~PTRELa~Qi~~~~~ 57 (200)
....++|+|+|++||+.|..+.|+
T Consensus 461 ~~~~rVLfLvDR~~L~~Qa~~~F~ 484 (1123)
T PRK11448 461 KRFRRILFLVDRSALGEQAEDAFK 484 (1123)
T ss_pred CccCeEEEEecHHHHHHHHHHHHH
Confidence 345689999999999999999998
No 121
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=56.17 E-value=24 Score=34.62 Aligned_cols=30 Identities=7% Similarity=0.008 Sum_probs=24.5
Q ss_pred EEEcccccHHHHHHHHHhh--CCCCeEEEEeC
Q psy13288 171 YAFVQERQKVHCLNTLFSK--CCSLLGVFTCT 200 (200)
Q Consensus 171 ~i~~~~~~K~~~L~~ll~~--~~~~k~iIF~n 200 (200)
.++....+|..++...+.. ....|+||||+
T Consensus 407 ~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~ 438 (830)
T PRK12904 407 LIYKTEKEKFDAVVEDIKERHKKGQPVLVGTV 438 (830)
T ss_pred eEEECHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 5666778899999999875 46679999996
No 122
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=55.07 E-value=26 Score=34.11 Aligned_cols=30 Identities=3% Similarity=-0.121 Sum_probs=24.9
Q ss_pred EEEcccccHHHHHHHHHhh--CCCCeEEEEeC
Q psy13288 171 YAFVQERQKVHCLNTLFSK--CCSLLGVFTCT 200 (200)
Q Consensus 171 ~i~~~~~~K~~~L~~ll~~--~~~~k~iIF~n 200 (200)
.+++...+|..++...++. ....|+|||||
T Consensus 401 ~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~ 432 (762)
T TIGR03714 401 KIYATLPEKLMATLEDVKEYHETGQPVLLITG 432 (762)
T ss_pred eEEECHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 5778888999999998875 35679999996
No 123
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=47.25 E-value=34 Score=33.49 Aligned_cols=65 Identities=8% Similarity=-0.057 Sum_probs=37.8
Q ss_pred EEeeCchhHHHHHHHhCCCCeEEEeccccccccc-eEEEEEcccccHHHHHHHHHhhC--CCCeEEEEeC
Q psy13288 134 AIATFPLTVKNFMEKHLKDPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSKC--CSLLGVFTCT 200 (200)
Q Consensus 134 fSAT~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i-~q~~i~~~~~~K~~~L~~ll~~~--~~~k~iIF~n 200 (200)
.+.|...+-.++.+.| +--.+.++.+...... ..-.++....+|..++...+... ...|+||||+
T Consensus 381 mTGTa~~e~~Ef~~iY--~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~ 448 (796)
T PRK12906 381 MTGTAKTEEEEFREIY--NMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTV 448 (796)
T ss_pred cCCCCHHHHHHHHHHh--CCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 4556554444454444 2223334432222222 23346667788999999888644 6679999996
No 124
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=46.88 E-value=2.8e+02 Score=26.80 Aligned_cols=52 Identities=6% Similarity=-0.098 Sum_probs=38.7
Q ss_pred CccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcc
Q psy13288 17 SDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTS 70 (200)
Q Consensus 17 ~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~ 70 (200)
|++|+-.++-.-. .-.++-||..++||-=||.|=++.+. .++++..++|...
T Consensus 294 SGKTvVA~laml~--ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~k 350 (677)
T COG1200 294 SGKTVVALLAMLA--AIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLK 350 (677)
T ss_pred CCHHHHHHHHHHH--HHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccc
Confidence 6666643332212 23467899999999999999888777 6899999998764
No 125
>KOG0854|consensus
Probab=41.42 E-value=30 Score=27.69 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=14.7
Q ss_pred CeeEEEEcCCHHHHHHH
Q psy13288 36 SLRLVMCVIFREVLLKI 52 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi 52 (200)
-+.-||==|+||||.+.
T Consensus 98 ~~yPIIaD~~rela~~l 114 (224)
T KOG0854|consen 98 VPYPIIADPNRELAFLL 114 (224)
T ss_pred CCCCeecCCchhhhhhh
Confidence 66778889999999986
No 126
>KOG0353|consensus
Probab=39.56 E-value=1e+02 Score=27.78 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=50.8
Q ss_pred Chhhccc--cccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCC--CCeEEEeccccccccceEEEEEccc
Q psy13288 102 PIVDRKF--GQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLK--DPYEINLMEELTLKGVTQYYAFVQE 176 (200)
Q Consensus 102 DEAD~ll--~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~--~~~~i~v~~~~~~~~i~q~~i~~~~ 176 (200)
||++..- ..+|..+...+.-+-+++ ++..+ -..||-+..|..-++..+- .....+ ..-+.++++-.+..-+.
T Consensus 222 devhccsqwghdfr~dy~~l~ilkrqf-~~~~iigltatatn~vl~d~k~il~ie~~~tf~--a~fnr~nl~yev~qkp~ 298 (695)
T KOG0353|consen 222 DEVHCCSQWGHDFRPDYKALGILKRQF-KGAPIIGLTATATNHVLDDAKDILCIEAAFTFR--AGFNRPNLKYEVRQKPG 298 (695)
T ss_pred cceeehhhhCcccCcchHHHHHHHHhC-CCCceeeeehhhhcchhhHHHHHHhHHhhheee--cccCCCCceeEeeeCCC
Confidence 6668764 467888863333333344 46666 6788888888777776653 222232 22223344433333232
Q ss_pred --ccHHHHHHHHHhh-CCCCeEEEEe
Q psy13288 177 --RQKVHCLNTLFSK-CCSLLGVFTC 199 (200)
Q Consensus 177 --~~K~~~L~~ll~~-~~~~k~iIF~ 199 (200)
++=.+-+.++++. ......||+|
T Consensus 299 n~dd~~edi~k~i~~~f~gqsgiiyc 324 (695)
T KOG0353|consen 299 NEDDCIEDIAKLIKGDFAGQSGIIYC 324 (695)
T ss_pred ChHHHHHHHHHHhccccCCCcceEEE
Confidence 2233344455542 3445678887
No 127
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=37.95 E-value=57 Score=32.75 Aligned_cols=31 Identities=6% Similarity=0.000 Sum_probs=25.1
Q ss_pred EEEEcccccHHHHHHHHHhhC--CCCeEEEEeC
Q psy13288 170 YYAFVQERQKVHCLNTLFSKC--CSLLGVFTCT 200 (200)
Q Consensus 170 ~~i~~~~~~K~~~L~~ll~~~--~~~k~iIF~n 200 (200)
-.++....+|..+|...+... ...|+||||+
T Consensus 574 d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~ 606 (1025)
T PRK12900 574 DLVYKTRREKYNAIVLKVEELQKKGQPVLVGTA 606 (1025)
T ss_pred CeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 356677888999999998654 6679999996
No 128
>KOG0352|consensus
Probab=37.12 E-value=57 Score=29.91 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=45.5
Q ss_pred eeeeeecCCCCChhhccc--cccchhhhhcHHHHHhhCCCCcEEEEEeeCchhHHH--HHHHhCCCCeEE
Q psy13288 91 RHTFAMTPSVGPIVDRKF--GQIFNGQILVPKHVLRSLEPKTKVSAIATFPLTVKN--FMEKHLKDPYEI 156 (200)
Q Consensus 91 ~~~~v~d~~~~DEAD~ll--~~~f~~~i~~i~~i~~~l~~~~Q~lfSAT~~~~v~~--~~~~~l~~~~~i 156 (200)
..++++ ||||..- ..+|.+|...+-.+-+.++.-..+...||-+.+|++ .....+++|+-+
T Consensus 142 L~Y~vV-----DEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAi 206 (641)
T KOG0352|consen 142 LRYIVV-----DEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAI 206 (641)
T ss_pred eeeEEe-----chhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHh
Confidence 455555 6779874 467999987777777788766666669999999988 445567788776
No 129
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=36.76 E-value=36 Score=34.07 Aligned_cols=29 Identities=14% Similarity=-0.051 Sum_probs=20.5
Q ss_pred eeEEEEcCCHHHHHHHHHHhh--cCCcEEEEe
Q psy13288 37 LRLVMCVIFREVLLKISSWEK--VNLPLYVES 66 (200)
Q Consensus 37 ~~~lIl~PTRELa~Qi~~~~~--~~l~~~~~~ 66 (200)
-++||+||+ -|..|=..++. .++...+.-
T Consensus 200 ~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~ 230 (956)
T PRK04914 200 ERVLILVPE-TLQHQWLVEMLRRFNLRFSLFD 230 (956)
T ss_pred CcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEc
Confidence 479999998 78888777775 455544443
No 130
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=33.74 E-value=78 Score=30.79 Aligned_cols=65 Identities=8% Similarity=-0.057 Sum_probs=35.0
Q ss_pred EEeeCchhHHHHHHHhCCCCeEEEeccccccccc-eEEEEEcccccHHHHHHHHHhhC--CCCeEEEEeC
Q psy13288 134 AIATFPLTVKNFMEKHLKDPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSKC--CSLLGVFTCT 200 (200)
Q Consensus 134 fSAT~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i-~q~~i~~~~~~K~~~L~~ll~~~--~~~k~iIF~n 200 (200)
.+.|...+-.++.+.|--+ .+.++.+...... ..-.++....+|..++.+.+... ...++||||+
T Consensus 346 mTGTa~te~~E~~~iY~l~--vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~ 413 (745)
T TIGR00963 346 MTGTAKTEEEEFEKIYNLE--VVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTT 413 (745)
T ss_pred cCCCcHHHHHHHHHHhCCC--EEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4555544444554444222 2333322222222 22235566778998888766432 5678999996
No 131
>PF13245 AAA_19: Part of AAA domain
Probab=31.61 E-value=61 Score=21.58 Aligned_cols=21 Identities=10% Similarity=0.022 Sum_probs=18.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHh
Q psy13288 36 SLRLVMCVIFREVLLKISSWE 56 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~ 56 (200)
+-++++++|||..+..+.+-+
T Consensus 42 ~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 42 GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCHHHHHHHHHHH
Confidence 568999999999999988766
No 132
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=30.75 E-value=3.6e+02 Score=26.71 Aligned_cols=121 Identities=13% Similarity=0.096 Sum_probs=65.8
Q ss_pred CCCeeEEEEcCCHHHHHHHHHHhh-c---CCcEEEEeCCccccccCCCCceeeecccccee------eeeeeecCCCCCh
Q psy13288 34 ELSLRLVMCVIFREVLLKISSWEK-V---NLPLYVESQGTSKFRSFGKGDIFNAGSVSRIT------RHTFAMTPSVGPI 103 (200)
Q Consensus 34 ~~~~~~lIl~PTRELa~Qi~~~~~-~---~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~------~~~~v~d~~~~DE 103 (200)
.+.-++|+++--|.|+.+..+-++ . ++..+.-.++..+...-.+.-+..+-+--|+. ..++++ ||
T Consensus 76 ~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~~~~rLivqIdSL~R~~~~~l~~yDvVII-----DE 150 (824)
T PF02399_consen 76 NPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDGRPYDRLIVQIDSLHRLDGSLLDRYDVVII-----DE 150 (824)
T ss_pred CCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccccccCeEEEEehhhhhcccccccccCEEEE-----eh
Confidence 356789999999999999999998 3 33333323222220000000001011111221 123333 77
Q ss_pred hhccccccchhhhhcH---HHHHhhC-CCCcEE-EEEeeCchhHHHHHHHhCCC-CeEEEec
Q psy13288 104 VDRKFGQIFNGQILVP---KHVLRSL-EPKTKV-SAIATFPLTVKNFMEKHLKD-PYEINLM 159 (200)
Q Consensus 104 AD~ll~~~f~~~i~~i---~~i~~~l-~~~~Q~-lfSAT~~~~v~~~~~~~l~~-~~~i~v~ 159 (200)
+...+.+=|.+-+.+. .+++..+ .....+ ++-||+++..-++...+..+ ++.+.+.
T Consensus 151 v~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n 212 (824)
T PF02399_consen 151 VMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCRPDENIHVIVN 212 (824)
T ss_pred HHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEe
Confidence 7888887554444332 2223332 233444 99999999999999997653 4444443
No 133
>KOG0920|consensus
Probab=30.70 E-value=3.3e+02 Score=27.31 Aligned_cols=111 Identities=13% Similarity=0.039 Sum_probs=60.8
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEEeCCccccccCCCCceeeecccccee-----------eeeeeec
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK------VNLPLYVESQGTSKFRSFGKGDIFNAGSVSRIT-----------RHTFAMT 97 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~-----------~~~~v~d 97 (200)
.....++=-|-|==|.-+++.+. .+-.|+.-++..+. .+..-.+..+|.|=++ ...+|+|
T Consensus 218 ~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~---~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivD 294 (924)
T KOG0920|consen 218 AACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESK---RSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVD 294 (924)
T ss_pred CCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecc---cCCceeEEEecHHHHHHHhccCcccccCceeeee
Confidence 44556666687777777776665 34444444444443 1111222237777555 3444554
Q ss_pred CCCCChhh-ccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCCeEEEec
Q psy13288 98 PSVGPIVD-RKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDPYEINLM 159 (200)
Q Consensus 98 ~~~~DEAD-~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~ 159 (200)
|+| |=++.+|.--+ ++.++.+- ++.++ +.|||+. .+....|+...-.+.+.
T Consensus 295 -----EVHER~i~~DflLi~--lk~lL~~~-p~LkvILMSAT~d---ae~fs~YF~~~pvi~i~ 347 (924)
T KOG0920|consen 295 -----EVHERSINTDFLLIL--LKDLLPRN-PDLKVILMSATLD---AELFSDYFGGCPVITIP 347 (924)
T ss_pred -----eEEEccCCcccHHHH--HHHHhhhC-CCceEEEeeeecc---hHHHHHHhCCCceEeec
Confidence 444 23444555444 34444444 47788 9999998 44456666676666653
No 134
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=30.37 E-value=19 Score=35.98 Aligned_cols=43 Identities=14% Similarity=-0.045 Sum_probs=35.0
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK 57 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~ 57 (200)
+|||+|+.|..-..++......+.++++|--+||-.|+.++++
T Consensus 282 qGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~ 324 (962)
T COG0610 282 QGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQ 324 (962)
T ss_pred cCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHH
Confidence 5788888765545455455788999999999999999999998
No 135
>KOG0964|consensus
Probab=30.13 E-value=46 Score=33.30 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=43.7
Q ss_pred eecCCCC---ChhhccccccchhhhhcHHHHHhhCCCCcEEEEEeeCchhHHHHHHHhCC
Q psy13288 95 AMTPSVG---PIVDRKFGQIFNGQILVPKHVLRSLEPKTKVSAIATFPLTVKNFMEKHLK 151 (200)
Q Consensus 95 v~d~~~~---DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~lfSAT~~~~v~~~~~~~l~ 151 (200)
-+|++|. ||.|.-||..+...+ ..+++.+..+.| |...||-+++-..+.+|+.
T Consensus 1116 rcDPAPFYlfDEIDAaLDaQyR~aV---a~lIkelS~~aQ-FI~TTFRpEll~vAdKfyg 1171 (1200)
T KOG0964|consen 1116 RCDPAPFYLFDEIDAALDAQYRTAV---ADLIKELSDSAQ-FITTTFRPELLSVADKFYG 1171 (1200)
T ss_pred hcCCcchhhHhHHhhhccHHHHHHH---HHHHHHHhhccc-eEeecccHHHHHHHHhhhc
Confidence 3566655 999999999999998 888998876644 6678999999999999864
No 136
>KOG0922|consensus
Probab=28.34 E-value=5.5e+02 Score=24.78 Aligned_cols=74 Identities=9% Similarity=-0.039 Sum_probs=37.8
Q ss_pred HHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCCeEEEeccccccccceEEEEEcccccH----HHHHHHHHhhCCCCe
Q psy13288 120 KHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQK----VHCLNTLFSKCCSLL 194 (200)
Q Consensus 120 ~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~q~~i~~~~~~K----~~~L~~ll~~~~~~k 194 (200)
++++++-+ .-.+ +.|||+. .+....|+++.-.+.+.... .-|+.+|..-+..+= +....++-...+++-
T Consensus 187 Kki~~~R~-~LklIimSATld---a~kfS~yF~~a~i~~i~GR~--fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GD 260 (674)
T KOG0922|consen 187 KKILKKRP-DLKLIIMSATLD---AEKFSEYFNNAPILTIPGRT--FPVEILYLKEPTADYVDAALITVIQIHLTEPPGD 260 (674)
T ss_pred HHHHhcCC-CceEEEEeeeec---HHHHHHHhcCCceEeecCCC--CceeEEeccCCchhhHHHHHHHHHHHHccCCCCC
Confidence 55555443 3466 9999997 33456677775555554111 124555555333331 122222222345566
Q ss_pred EEEEe
Q psy13288 195 GVFTC 199 (200)
Q Consensus 195 ~iIF~ 199 (200)
++||-
T Consensus 261 ILvFL 265 (674)
T KOG0922|consen 261 ILVFL 265 (674)
T ss_pred EEEEe
Confidence 77774
No 137
>KOG0925|consensus
Probab=28.32 E-value=4.6e+02 Score=24.72 Aligned_cols=73 Identities=15% Similarity=0.067 Sum_probs=43.6
Q ss_pred HHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCCeEEEeccccccccceEEEEEcccccHHHHHH-HHHh---hCCCCe
Q psy13288 120 KHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVHCLN-TLFS---KCCSLL 194 (200)
Q Consensus 120 ~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~q~~i~~~~~~K~~~L~-~ll~---~~~~~k 194 (200)
+++...-| +..+ ..|||+. ..-.+.|+.|+=.+.+.. .+-++-+|..-.+.|-+++-. ..++ ....|-
T Consensus 183 k~v~~~rp-dLk~vvmSatl~---a~Kfq~yf~n~Pll~vpg---~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GD 255 (699)
T KOG0925|consen 183 KEVVRNRP-DLKLVVMSATLD---AEKFQRYFGNAPLLAVPG---THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGD 255 (699)
T ss_pred HHHHhhCC-CceEEEeecccc---hHHHHHHhCCCCeeecCC---CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCC
Confidence 55555555 6677 8999986 333567888877777653 122444555444555554332 3333 336778
Q ss_pred EEEEe
Q psy13288 195 GVFTC 199 (200)
Q Consensus 195 ~iIF~ 199 (200)
+++|.
T Consensus 256 ilvFL 260 (699)
T KOG0925|consen 256 ILVFL 260 (699)
T ss_pred EEEEe
Confidence 88885
No 138
>KOG1556|consensus
Probab=27.94 E-value=1.5e+02 Score=24.99 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=42.8
Q ss_pred Chhh---ccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCc------hhHHHHHHHhCCCCeEEEec
Q psy13288 102 PIVD---RKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFP------LTVKNFMEKHLKDPYEINLM 159 (200)
Q Consensus 102 DEAD---~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~------~~v~~~~~~~l~~~~~i~v~ 159 (200)
||-| ..+|.+|.+.+ ..++++...+-.+ -|--|=| -.+.++.++|..||..+.++
T Consensus 62 Ddk~~svWFlDh~Y~esM---~~mfkKvNakekivGWYhTGPkl~~nDl~In~l~k~y~pnpvLvIId 126 (309)
T KOG1556|consen 62 DDKDKSVWFLDHNYIESM---FGMFKKVNAKEKVVGWYHTGPKLRENDLDINELLKRYVPNPVLVIID 126 (309)
T ss_pred cCCCCceEEeccHHHHHH---HHHHHHhcchhheeeeeccCCccccchhhHHHHHhhcCCCceEEEEe
Confidence 5556 77899999998 9999998776666 6666654 36778999999999887554
No 139
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=27.91 E-value=9.2 Score=32.44 Aligned_cols=50 Identities=14% Similarity=0.005 Sum_probs=35.9
Q ss_pred hHHhHhhhcCccEEEecCccccc-ccCC---CCeeEEEEcCCHHHHHHHHHHhh
Q psy13288 8 HSILLILKKSDFTLKISCPRSQL-TVQE---LSLRLVMCVIFREVLLKISSWEK 57 (200)
Q Consensus 8 ~~i~~~l~~~~~~l~~~~p~~~~-~~~~---~~~~~lIl~PTRELa~Qi~~~~~ 57 (200)
+.+..+=.|.|+|+++++|.... .... ...+.++.++|..+..|....++
T Consensus 29 ~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 29 IGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 44556667899999999988421 1111 23589999999999999876665
No 140
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=27.91 E-value=9.2 Score=32.44 Aligned_cols=50 Identities=14% Similarity=0.005 Sum_probs=35.9
Q ss_pred hHHhHhhhcCccEEEecCccccc-ccCC---CCeeEEEEcCCHHHHHHHHHHhh
Q psy13288 8 HSILLILKKSDFTLKISCPRSQL-TVQE---LSLRLVMCVIFREVLLKISSWEK 57 (200)
Q Consensus 8 ~~i~~~l~~~~~~l~~~~p~~~~-~~~~---~~~~~lIl~PTRELa~Qi~~~~~ 57 (200)
+.+..+=.|.|+|+++++|.... .... ...+.++.++|..+..|....++
T Consensus 29 ~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 29 IGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 44556667899999999988421 1111 23589999999999999876665
No 141
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=26.51 E-value=1.2e+02 Score=28.42 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=32.4
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
...++||.++|++.|.++++.+. .++++..+.|+.+.
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~ 293 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQ 293 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCH
Confidence 45689999999999999999998 88899999988654
No 142
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=26.35 E-value=74 Score=32.26 Aligned_cols=39 Identities=26% Similarity=0.263 Sum_probs=27.9
Q ss_pred ccCCCCeeEEEEcCCHHHHHHHHHHhh--cCC---cEEEEeCCc
Q psy13288 31 TVQELSLRLVMCVIFREVLLKISSWEK--VNL---PLYVESQGT 69 (200)
Q Consensus 31 ~~~~~~~~~lIl~PTRELa~Qi~~~~~--~~l---~~~~~~gg~ 69 (200)
..+..+.|..|-.-=|-|-+|+.+.++ .++ ..++++||.
T Consensus 456 sd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ddLAVlIGs~ 499 (1110)
T TIGR02562 456 RDDKQGARFAIALGLRSLTLQTGHALKTRLNLSDDDLAVLIGGT 499 (1110)
T ss_pred CCCCCCceEEEEccccceeccchHHHHHhcCCCccceEEEECHH
Confidence 345567888888888999999998888 222 256666664
No 143
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=25.94 E-value=1.1e+02 Score=27.01 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=32.3
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
..-++||.++|++-|..+.+.++ .++++..+.|+.+.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~ 281 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQ 281 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCH
Confidence 45689999999999999999998 78898888888653
No 144
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=25.17 E-value=1.2e+02 Score=26.78 Aligned_cols=36 Identities=6% Similarity=-0.093 Sum_probs=31.6
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
.-++||.++|++-|..+.+.+. .+.++..+.|+.+.
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~ 291 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQ 291 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCh
Confidence 4589999999999999999998 78899998888654
No 145
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=23.15 E-value=2e+02 Score=19.86 Aligned_cols=35 Identities=6% Similarity=0.062 Sum_probs=29.5
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCcc
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTS 70 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~ 70 (200)
.-++||.+|+++-+.++.+.++ ....+..+.|+.+
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 63 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGS 63 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCC
Confidence 4579999999999999999998 6777777777754
No 146
>COG4889 Predicted helicase [General function prediction only]
Probab=22.40 E-value=76 Score=31.90 Aligned_cols=43 Identities=7% Similarity=-0.016 Sum_probs=32.3
Q ss_pred ccccCCCCeeEEEEcCCHHHHHHHHHHhh----cCCcEEEEeCCccc
Q psy13288 29 QLTVQELSLRLVMCVIFREVLLKISSWEK----VNLPLYVESQGTSK 71 (200)
Q Consensus 29 ~~~~~~~~~~~lIl~PTRELa~Qi~~~~~----~~l~~~~~~gg~~~ 71 (200)
++.+....-+.|.|||+-.|-.|+.+... ..++.+.+......
T Consensus 199 kisEala~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aVcSD~kv 245 (1518)
T COG4889 199 KISEALAAARILFLVPSISLLSQTLREWTAQKELDFRASAVCSDDKV 245 (1518)
T ss_pred HHHHHHhhhheEeecchHHHHHHHHHHHhhccCccceeEEEecCccc
Confidence 34445566889999999999999998876 66776666655544
No 147
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=21.97 E-value=48 Score=28.75 Aligned_cols=25 Identities=8% Similarity=-0.089 Sum_probs=21.0
Q ss_pred CCCCeeEEEEcCCHHHHHHHHHHhh
Q psy13288 33 QELSLRLVMCVIFREVLLKISSWEK 57 (200)
Q Consensus 33 ~~~~~~~lIl~PTRELa~Qi~~~~~ 57 (200)
...+-.++.+++...|...+.+.+.
T Consensus 28 ~~~~~~~~~l~~n~~l~~~l~~~l~ 52 (352)
T PF09848_consen 28 SEEGKKVLYLCGNHPLRNKLREQLA 52 (352)
T ss_pred cccCCceEEEEecchHHHHHHHHHh
Confidence 3456778999999999999888887
No 148
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=21.59 E-value=1.6e+02 Score=29.38 Aligned_cols=32 Identities=6% Similarity=0.112 Sum_probs=23.9
Q ss_pred EEEEEcccccHHHHHHHHHhhC--CCCeEEEEeC
Q psy13288 169 QYYAFVQERQKVHCLNTLFSKC--CSLLGVFTCT 200 (200)
Q Consensus 169 q~~i~~~~~~K~~~L~~ll~~~--~~~k~iIF~n 200 (200)
.-.++....+|..++..-+... ...|+||||+
T Consensus 419 ~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~ 452 (896)
T PRK13104 419 ADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTV 452 (896)
T ss_pred CCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3356777888999988776533 5678999996
Done!