Query psy13288
Match_columns 200
No_of_seqs 131 out of 1179
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 15:38:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 99.9 5E-26 1.7E-30 200.7 11.3 176 15-200 102-308 (434)
2 3fmo_B ATP-dependent RNA helic 99.9 4.5E-24 1.5E-28 180.3 8.4 136 15-159 140-298 (300)
3 3fmp_B ATP-dependent RNA helic 99.9 2.4E-23 8.3E-28 184.8 8.5 178 15-200 140-341 (479)
4 2j0s_A ATP-dependent RNA helic 99.9 2.1E-23 7.3E-28 180.7 7.5 177 15-200 83-284 (410)
5 2i4i_A ATP-dependent RNA helic 99.9 2.4E-22 8.2E-27 174.0 9.1 157 35-200 100-284 (417)
6 3eiq_A Eukaryotic initiation f 99.9 2.5E-22 8.4E-27 173.6 9.1 177 15-200 86-288 (414)
7 3fht_A ATP-dependent RNA helic 99.9 1.4E-21 4.7E-26 168.6 12.2 178 15-200 73-274 (412)
8 1s2m_A Putative ATP-dependent 99.9 3.3E-21 1.1E-25 166.3 12.0 177 15-200 67-266 (400)
9 3fe2_A Probable ATP-dependent 99.8 5.1E-22 1.7E-26 161.9 5.7 135 16-159 76-238 (242)
10 1xti_A Probable ATP-dependent 99.8 7.2E-21 2.5E-25 163.2 11.6 177 15-200 54-258 (391)
11 1wrb_A DJVLGB; RNA helicase, D 99.8 9.7E-22 3.3E-26 160.9 5.0 148 15-171 69-253 (253)
12 3pey_A ATP-dependent RNA helic 99.8 1.3E-20 4.4E-25 161.2 11.9 177 15-200 53-251 (395)
13 3iuy_A Probable ATP-dependent 99.8 3.4E-21 1.1E-25 155.2 5.9 134 16-158 67-228 (228)
14 1q0u_A Bstdead; DEAD protein, 99.8 5E-21 1.7E-25 153.5 6.1 136 16-160 51-213 (219)
15 2oxc_A Probable ATP-dependent 99.8 6.4E-21 2.2E-25 154.2 5.8 135 15-158 70-228 (230)
16 3ber_A Probable ATP-dependent 99.8 6.3E-21 2.1E-25 156.6 5.8 136 15-159 89-248 (249)
17 1fuu_A Yeast initiation factor 99.8 4.2E-21 1.4E-25 164.7 4.9 176 16-200 68-267 (394)
18 3bor_A Human initiation factor 99.8 8.4E-21 2.9E-25 154.3 4.6 134 17-159 78-235 (237)
19 2pl3_A Probable ATP-dependent 99.8 1.9E-20 6.4E-25 151.6 4.6 136 15-159 71-233 (236)
20 1vec_A ATP-dependent RNA helic 99.8 3.5E-20 1.2E-24 146.6 6.0 133 15-156 49-205 (206)
21 1qde_A EIF4A, translation init 99.8 6E-20 2E-24 147.2 6.0 135 16-159 61-217 (224)
22 3sqw_A ATP-dependent RNA helic 99.8 1.9E-19 6.4E-24 163.8 8.5 177 15-200 69-296 (579)
23 1hv8_A Putative ATP-dependent 99.8 6.9E-19 2.3E-23 149.1 11.1 173 15-200 53-246 (367)
24 3ly5_A ATP-dependent RNA helic 99.8 6.9E-20 2.4E-24 151.5 4.3 130 16-154 101-258 (262)
25 3i5x_A ATP-dependent RNA helic 99.8 2.9E-19 1E-23 161.3 8.6 177 15-200 120-347 (563)
26 2gxq_A Heat resistant RNA depe 99.8 2.5E-19 8.4E-24 141.6 6.5 134 16-158 48-205 (207)
27 3fho_A ATP-dependent RNA helic 99.8 6.1E-19 2.1E-23 158.4 9.9 177 15-200 167-365 (508)
28 3dkp_A Probable ATP-dependent 99.8 1.3E-19 4.3E-24 147.5 4.9 136 15-159 75-241 (245)
29 1t6n_A Probable ATP-dependent 99.8 1.9E-19 6.6E-24 144.0 5.6 134 16-158 61-220 (220)
30 3oiy_A Reverse gyrase helicase 99.7 3.9E-19 1.3E-23 154.7 2.1 167 15-200 45-260 (414)
31 4ddu_A Reverse gyrase; topoiso 99.7 1.1E-18 3.6E-23 169.5 5.2 174 8-200 85-317 (1104)
32 2z0m_A 337AA long hypothetical 99.7 1E-17 3.4E-22 140.5 10.3 167 16-200 41-228 (337)
33 1tf5_A Preprotein translocase 99.7 2.6E-19 8.9E-24 167.8 -0.1 117 14-142 104-290 (844)
34 2fsf_A Preprotein translocase 99.7 1.2E-18 4.2E-23 163.1 3.9 102 15-128 96-240 (853)
35 1gku_B Reverse gyrase, TOP-RG; 99.7 1.5E-18 5.1E-23 167.9 -2.2 168 15-200 80-283 (1054)
36 1nkt_A Preprotein translocase 99.6 3.2E-17 1.1E-21 154.1 3.1 115 15-141 133-317 (922)
37 3l9o_A ATP-dependent RNA helic 99.6 7.1E-16 2.4E-20 149.8 11.1 130 16-159 209-354 (1108)
38 2v1x_A ATP-dependent DNA helic 99.6 1.4E-14 4.6E-19 132.7 12.3 172 17-200 70-275 (591)
39 2xgj_A ATP-dependent RNA helic 99.5 9.5E-14 3.2E-18 133.9 11.2 142 16-173 111-269 (1010)
40 4a4z_A Antiviral helicase SKI2 99.5 1.3E-13 4.4E-18 132.8 12.0 95 35-141 81-191 (997)
41 3o8b_A HCV NS3 protease/helica 99.5 4E-14 1.4E-18 130.9 5.3 93 36-141 257-363 (666)
42 2whx_A Serine protease/ntpase/ 99.4 8.9E-15 3E-19 134.6 -0.0 123 16-159 196-336 (618)
43 1oyw_A RECQ helicase, ATP-depe 99.4 2.9E-13 9.9E-18 122.1 9.7 153 37-200 66-244 (523)
44 4a2p_A RIG-I, retinoic acid in 99.4 3E-13 1E-17 120.7 8.5 117 15-139 31-177 (556)
45 3tbk_A RIG-I helicase domain; 99.4 7.7E-13 2.6E-17 117.7 10.2 117 15-139 28-175 (555)
46 3llm_A ATP-dependent RNA helic 99.4 3.4E-13 1.1E-17 109.3 5.4 108 35-154 108-232 (235)
47 1yks_A Genome polyprotein [con 99.4 4.3E-14 1.5E-18 124.9 -0.4 117 11-145 13-147 (440)
48 2p6r_A Afuhel308 helicase; pro 99.3 1.3E-12 4.3E-17 121.4 8.0 152 36-200 68-250 (702)
49 4a2q_A RIG-I, retinoic acid in 99.3 2.6E-12 8.9E-17 120.9 9.4 117 15-139 272-418 (797)
50 2va8_A SSO2462, SKI2-type heli 99.3 3.2E-12 1.1E-16 118.7 9.3 123 14-148 54-194 (715)
51 2zj8_A DNA helicase, putative 99.3 1.1E-12 3.7E-17 122.1 5.1 168 15-200 48-245 (720)
52 2ykg_A Probable ATP-dependent 99.3 4.6E-13 1.6E-17 123.5 1.7 117 15-139 37-184 (696)
53 2fwr_A DNA repair protein RAD2 99.3 2.4E-13 8.1E-18 120.1 -2.2 162 15-200 117-357 (472)
54 4a2w_A RIG-I, retinoic acid in 99.3 1.9E-11 6.6E-16 117.1 10.6 117 15-139 272-418 (936)
55 4f92_B U5 small nuclear ribonu 99.2 1.2E-11 4.2E-16 124.4 9.2 178 15-200 951-1163(1724)
56 2wv9_A Flavivirin protease NS2 99.2 5E-13 1.7E-17 124.0 -2.2 112 15-144 250-379 (673)
57 2eyq_A TRCF, transcription-rep 99.2 2.9E-11 9.8E-16 118.0 8.1 148 35-200 651-820 (1151)
58 2v6i_A RNA helicase; membrane, 99.2 5.6E-12 1.9E-16 111.0 2.7 117 13-143 9-139 (431)
59 1wp9_A ATP-dependent RNA helic 99.2 2.8E-11 9.7E-16 104.8 7.0 127 12-148 29-179 (494)
60 2xau_A PRE-mRNA-splicing facto 99.2 1.2E-10 4E-15 109.6 11.2 183 5-200 97-311 (773)
61 2jlq_A Serine protease subunit 99.2 8.5E-12 2.9E-16 110.4 3.0 127 16-158 29-168 (451)
62 2z83_A Helicase/nucleoside tri 99.1 2.2E-12 7.6E-17 114.4 -2.1 109 11-145 26-160 (459)
63 2oca_A DAR protein, ATP-depend 99.1 5.1E-12 1.7E-16 112.6 -0.9 113 16-142 138-266 (510)
64 4f92_B U5 small nuclear ribonu 99.1 3.6E-10 1.2E-14 113.9 10.2 158 34-200 132-325 (1724)
65 1rif_A DAR protein, DNA helica 99.0 4.4E-11 1.5E-15 99.1 2.2 113 16-142 138-266 (282)
66 3h1t_A Type I site-specific re 99.0 9.8E-11 3.4E-15 106.3 4.1 96 35-140 234-343 (590)
67 1gm5_A RECG; helicase, replica 99.0 9.8E-11 3.4E-15 110.2 3.2 166 14-200 397-586 (780)
68 4gl2_A Interferon-induced heli 98.9 7E-11 2.4E-15 108.9 -1.9 125 13-140 29-193 (699)
69 3rc3_A ATP-dependent RNA helic 98.9 5.7E-09 1.9E-13 96.9 9.1 93 38-149 181-291 (677)
70 3b6e_A Interferon-induced heli 98.8 2.3E-10 7.7E-15 90.0 -1.1 95 35-137 81-216 (216)
71 2ipc_A Preprotein translocase 98.8 8.1E-10 2.8E-14 104.3 0.4 70 16-89 102-179 (997)
72 2fz4_A DNA repair protein RAD2 98.4 1.8E-07 6E-12 75.8 4.0 85 36-139 133-229 (237)
73 2w00_A HSDR, R.ECOR124I; ATP-b 98.3 3.3E-08 1.1E-12 95.5 -2.2 110 15-140 309-440 (1038)
74 1z63_A Helicase of the SNF2/RA 98.0 2E-06 7E-11 76.0 3.1 110 15-138 65-187 (500)
75 3crv_A XPD/RAD3 related DNA he 97.9 1.2E-06 4.1E-11 79.2 -1.0 56 10-70 26-86 (551)
76 2p6n_A ATP-dependent RNA helic 97.8 2.2E-05 7.7E-10 61.3 4.9 54 146-200 8-62 (191)
77 2d7d_A Uvrabc system protein B 97.7 3E-06 1E-10 78.4 -0.9 67 36-109 255-345 (661)
78 3dmq_A RNA polymerase-associat 97.4 7.8E-05 2.7E-09 71.7 3.8 115 15-138 179-316 (968)
79 3mwy_W Chromo domain-containin 96.1 0.045 1.5E-06 51.4 11.4 91 36-138 286-405 (800)
80 1c4o_A DNA nucleotide excision 96.0 0.012 4E-07 54.3 7.1 15 128-142 379-394 (664)
81 4a15_A XPD helicase, ATP-depen 95.3 0.0018 6.2E-08 59.3 -1.6 60 10-70 26-90 (620)
82 1w36_D RECD, exodeoxyribonucle 95.1 0.012 3.9E-07 53.8 3.4 23 35-57 195-217 (608)
83 2vl7_A XPD; helicase, unknown 94.0 0.012 4.1E-07 52.8 0.6 54 9-67 29-83 (540)
84 1z3i_X Similar to RAD54-like; 90.7 0.28 9.5E-06 44.8 5.2 90 37-138 115-230 (644)
85 3jux_A Protein translocase sub 90.1 0.57 1.9E-05 44.0 6.7 68 131-200 411-482 (822)
86 3jux_A Protein translocase sub 87.0 0.17 5.9E-06 47.4 1.0 50 15-67 97-152 (822)
87 2rb4_A ATP-dependent RNA helic 58.5 14 0.00049 27.0 4.8 37 35-71 33-70 (175)
88 2hjv_A ATP-dependent RNA helic 54.8 16 0.00054 26.4 4.4 36 36-71 35-71 (163)
89 1z5z_A Helicase of the SNF2/RA 54.7 7.6 0.00026 31.2 2.8 27 174-200 92-120 (271)
90 1fuk_A Eukaryotic initiation f 53.5 17 0.0006 26.2 4.5 37 35-71 29-66 (165)
91 2p6n_A ATP-dependent RNA helic 48.6 24 0.00083 26.4 4.7 36 36-71 54-90 (191)
92 1t5i_A C_terminal domain of A 44.6 28 0.00095 25.4 4.4 36 36-71 31-67 (172)
93 2jgn_A DBX, DDX3, ATP-dependen 43.2 29 0.00098 25.8 4.4 37 35-71 45-82 (185)
94 3eaq_A Heat resistant RNA depe 39.9 34 0.0012 25.9 4.4 36 36-71 31-67 (212)
95 3o8b_A HCV NS3 protease/helica 34.9 73 0.0025 29.2 6.3 37 35-71 395-432 (666)
96 1hv8_A Putative ATP-dependent 30.3 66 0.0023 25.6 4.9 37 35-71 237-274 (367)
97 1xti_A Probable ATP-dependent 29.4 67 0.0023 26.0 4.8 37 35-71 249-286 (391)
98 2i4i_A ATP-dependent RNA helic 28.3 82 0.0028 25.7 5.2 37 35-71 275-312 (417)
99 3fht_A ATP-dependent RNA helic 28.1 63 0.0021 26.3 4.4 36 36-71 266-302 (412)
100 1s2m_A Putative ATP-dependent 26.5 77 0.0026 25.8 4.7 36 36-71 258-294 (400)
101 3i32_A Heat resistant RNA depe 24.9 83 0.0028 25.5 4.5 36 36-71 28-64 (300)
102 2yjt_D ATP-dependent RNA helic 30.7 15 0.00053 26.7 0.0 37 35-71 29-66 (170)
103 3pey_A ATP-dependent RNA helic 24.6 79 0.0027 25.4 4.4 37 35-71 242-279 (395)
104 2j0s_A ATP-dependent RNA helic 23.9 83 0.0028 25.7 4.4 35 37-71 277-312 (410)
105 1yks_A Genome polyprotein [con 20.5 83 0.0028 26.7 3.8 33 36-68 177-210 (440)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.93 E-value=5e-26 Score=200.71 Aligned_cols=176 Identities=16% Similarity=0.136 Sum_probs=141.9
Q ss_pred hcCccEEEecCccc-ccc-----cCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc----CCCCc
Q psy13288 15 KKSDFTLKISCPRS-QLT-----VQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS----FGKGD 79 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~~-----~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~----~~~~~ 79 (200)
.|+|+|+++..|.. ++. ....++++||++||||||.|++++++ .++++..++||.+...+ ....+
T Consensus 102 TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~ 181 (434)
T 2db3_A 102 TGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCH 181 (434)
T ss_dssp TTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCS
T ss_pred CCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCC
Confidence 34666776777763 222 22357899999999999999999988 56888999999875211 11234
Q ss_pred eeeecccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhC--CCCcEE-EEEeeCchhHHH
Q psy13288 80 IFNAGSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSL--EPKTKV-SAIATFPLTVKN 144 (200)
Q Consensus 80 ~~~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l--~~~~Q~-lfSAT~~~~v~~ 144 (200)
+. ++||||+. ..++|+ ||||+|++.||.+++ ..+++.+ +.++|+ +||||+|.++++
T Consensus 182 Iv-v~Tp~~l~~~l~~~~~~l~~~~~lVl-----DEah~~~~~gf~~~~---~~i~~~~~~~~~~q~l~~SAT~~~~~~~ 252 (434)
T 2db3_A 182 VV-IATPGRLLDFVDRTFITFEDTRFVVL-----DEADRMLDMGFSEDM---RRIMTHVTMRPEHQTLMFSATFPEEIQR 252 (434)
T ss_dssp EE-EECHHHHHHHHHTTSCCCTTCCEEEE-----ETHHHHTSTTTHHHH---HHHHHCTTSCSSCEEEEEESCCCHHHHH
T ss_pred EE-EEChHHHHHHHHhCCcccccCCeEEE-----ccHhhhhccCcHHHH---HHHHHhcCCCCCceEEEEeccCCHHHHH
Confidence 44 79999997 234455 778999999999998 8998875 678999 999999999999
Q ss_pred HHHHhCCCCeEEEec-cccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 145 FMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 145 ~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
++..+++++..+.+. ......++.|.+..++..+|...|..++..... ++|||||
T Consensus 253 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~~lVF~~ 308 (434)
T 2db3_A 253 MAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQAD-GTIVFVE 308 (434)
T ss_dssp HHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCT-TEEEECS
T ss_pred HHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCC-CEEEEEe
Confidence 999999999999887 566678899999999999999999999988654 4999997
No 2
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.90 E-value=4.5e-24 Score=180.31 Aligned_cols=136 Identities=20% Similarity=0.141 Sum_probs=111.8
Q ss_pred hcCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEEeCCccccccCC-CCceeeeccc
Q psy13288 15 KKSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK------VNLPLYVESQGTSKFRSFG-KGDIFNAGSV 86 (200)
Q Consensus 15 ~~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~~gg~~~~~~~~-~~~~~~~~TP 86 (200)
.|+|+|++|..|. +++.....++++||++||||||.|++++++ .++++....||....+... ..+++ +|||
T Consensus 140 TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Il-V~TP 218 (300)
T 3fmo_B 140 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIV-IGTP 218 (300)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEE-EECH
T ss_pred CCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEE-EECH
Confidence 3467777777777 456666778999999999999999999988 3688999999987644322 23443 8999
Q ss_pred ccee-------------eeeeeecCCCCChhhcccc-ccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCC
Q psy13288 87 SRIT-------------RHTFAMTPSVGPIVDRKFG-QIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLK 151 (200)
Q Consensus 87 grl~-------------~~~~v~d~~~~DEAD~ll~-~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~ 151 (200)
||+. ++++|+ ||||+|++ .+|.+++ ..|++.+++++|+ +||||++.++.++++.+++
T Consensus 219 ~~l~~~l~~~~~~~l~~l~~lVl-----DEad~l~~~~~~~~~~---~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~ 290 (300)
T 3fmo_B 219 GTVLDWCSKLKFIDPKKIKVFVL-----DEADVMIATQGHQDQS---IRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVP 290 (300)
T ss_dssp HHHHHHHTTTCCCCGGGCSEEEE-----TTHHHHHHSTTHHHHH---HHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSS
T ss_pred HHHHHHHHhcCCCChhhceEEEE-----eCHHHHhhccCcHHHH---HHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCC
Confidence 9985 233444 78899998 6899998 8999999999999 9999999999999999999
Q ss_pred CCeEEEec
Q psy13288 152 DPYEINLM 159 (200)
Q Consensus 152 ~~~~i~v~ 159 (200)
+|..|.++
T Consensus 291 ~p~~i~~~ 298 (300)
T 3fmo_B 291 DPNVIKLK 298 (300)
T ss_dssp SCEEEEEC
T ss_pred CCeEEEec
Confidence 99999875
No 3
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.88 E-value=2.4e-23 Score=184.81 Aligned_cols=178 Identities=21% Similarity=0.206 Sum_probs=109.2
Q ss_pred hcCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEEeCCccccccCCCCceeeecccc
Q psy13288 15 KKSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK------VNLPLYVESQGTSKFRSFGKGDIFNAGSVS 87 (200)
Q Consensus 15 ~~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~~gg~~~~~~~~~~~~~~~~TPg 87 (200)
.|+|+|++|..|. ..+......+++|||+||||||.|++++++ .++.+....||....+......-+.++|||
T Consensus 140 TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~ 219 (479)
T 3fmp_B 140 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPG 219 (479)
T ss_dssp SSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHH
T ss_pred CCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECch
Confidence 4567777777777 455566678899999999999999998887 467888888887763332222234479999
Q ss_pred cee-------------eeeeeecCCCCChhhcccc-ccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCC
Q psy13288 88 RIT-------------RHTFAMTPSVGPIVDRKFG-QIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKD 152 (200)
Q Consensus 88 rl~-------------~~~~v~d~~~~DEAD~ll~-~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~ 152 (200)
|+. ..++|+ ||||+|++ .+|...+ ..+.+.+++++|+ +||||++.++..++..++.+
T Consensus 220 ~l~~~l~~~~~~~~~~~~~iVi-----DEah~~~~~~~~~~~~---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~ 291 (479)
T 3fmp_B 220 TVLDWCSKLKFIDPKKIKVFVL-----DEADVMIATQGHQDQS---IRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPD 291 (479)
T ss_dssp HHHHHHTTSCCCCGGGCCEEEE-----CCHHHHHTSTTHHHHH---HHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSS
T ss_pred HHHHHHHhcCCcCcccCCEEEE-----ECHHHHhhcCCcHHHH---HHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCC
Confidence 995 233444 78899998 6888887 8899999999999 99999999999999999999
Q ss_pred CeEEEec-cccccccceEEEEEccc-ccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 153 PYEINLM-EELTLKGVTQYYAFVQE-RQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 153 ~~~i~v~-~~~~~~~i~q~~i~~~~-~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
|..+.+. .......+.|+|+.++. ..|...|..++.....+++|||||
T Consensus 292 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~ 341 (479)
T 3fmp_B 292 PNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCH 341 (479)
T ss_dssp EEEEEEC-------------------------------------------
T ss_pred CeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeC
Confidence 9999887 66777889999999886 579999999998877889999996
No 4
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.88 E-value=2.1e-23 Score=180.71 Aligned_cols=177 Identities=24% Similarity=0.303 Sum_probs=142.6
Q ss_pred hcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc---C-CCCceeeec
Q psy13288 15 KKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS---F-GKGDIFNAG 84 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~---~-~~~~~~~~~ 84 (200)
.|+|+|+.+..|.. .+.....+.++||++||||||.|+.+.++ .++++....||.+.... . ...+++ ++
T Consensus 83 TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iv-v~ 161 (410)
T 2j0s_A 83 SGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVV-AG 161 (410)
T ss_dssp TTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEE-EE
T ss_pred CCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEE-Ec
Confidence 34556666666663 34444567899999999999999999987 57888999999764211 1 122333 79
Q ss_pred ccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCC
Q psy13288 85 SVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLK 151 (200)
Q Consensus 85 TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~ 151 (200)
|||++. ..++|+ ||||++++.+|...+ ..+++.++++.|+ ++|||++.++.++++.++.
T Consensus 162 Tp~~l~~~l~~~~~~~~~~~~vVi-----DEah~~~~~~~~~~~---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 233 (410)
T 2j0s_A 162 TPGRVFDMIRRRSLRTRAIKMLVL-----DEADEMLNKGFKEQI---YDVYRYLPPATQVVLISATLPHEILEMTNKFMT 233 (410)
T ss_dssp CHHHHHHHHHTTSSCCTTCCEEEE-----ETHHHHTSTTTHHHH---HHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCS
T ss_pred CHHHHHHHHHhCCccHhheeEEEE-----ccHHHHHhhhhHHHH---HHHHHhCccCceEEEEEcCCCHHHHHHHHHHcC
Confidence 999987 234455 778999999999998 9999999999999 9999999999999999999
Q ss_pred CCeEEEec-cccccccceEEEEEccccc-HHHHHHHHHhhCCCCeEEEEeC
Q psy13288 152 DPYEINLM-EELTLKGVTQYYAFVQERQ-KVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 152 ~~~~i~v~-~~~~~~~i~q~~i~~~~~~-K~~~L~~ll~~~~~~k~iIF~n 200 (200)
+|..+.+. ......++.|++..++..+ |...|..+++....+++|||||
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~ 284 (410)
T 2j0s_A 234 DPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCN 284 (410)
T ss_dssp SCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECS
T ss_pred CCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99998776 6677788999999988665 9999999999888889999997
No 5
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.87 E-value=2.4e-22 Score=174.05 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=127.1
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc----CCCCceeeecccccee------------eee
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS----FGKGDIFNAGSVSRIT------------RHT 93 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~----~~~~~~~~~~TPgrl~------------~~~ 93 (200)
.++++||++||||||.|+++.++ .++++....||.+.... ....+++ ++|||++. ..+
T Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~-v~Tp~~l~~~l~~~~~~~~~~~~ 178 (417)
T 2i4i_A 100 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLL-VATPGRLVDMMERGKIGLDFCKY 178 (417)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEE-EECHHHHHHHHHTTSBCCTTCCE
T ss_pred CCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEE-EEChHHHHHHHHcCCcChhhCcE
Confidence 34889999999999999999987 57889999999764211 1123444 79999987 233
Q ss_pred eeecCCCCChhhccccccchhhhhcHHHHHhh--CCC--CcEE-EEEeeCchhHHHHHHHhCCCCeEEEec-cccccccc
Q psy13288 94 FAMTPSVGPIVDRKFGQIFNGQILVPKHVLRS--LEP--KTKV-SAIATFPLTVKNFMEKHLKDPYEINLM-EELTLKGV 167 (200)
Q Consensus 94 ~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~--l~~--~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~-~~~~~~~i 167 (200)
+|+ ||||++++.+|...+ ..++.. ++. ..|+ ++|||++.++..++..++.+|..+.+. ......++
T Consensus 179 iVi-----DEah~~~~~~~~~~~---~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 250 (417)
T 2i4i_A 179 LVL-----DEADRMLDMGFEPQI---RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENI 250 (417)
T ss_dssp EEE-----SSHHHHHHTTCHHHH---HHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSE
T ss_pred EEE-----EChhHhhccCcHHHH---HHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCc
Confidence 444 778999999999998 888874 343 6899 999999999999999999999988876 55667889
Q ss_pred eEEEEEcccccHHHHHHHHHhhC-CCCeEEEEeC
Q psy13288 168 TQYYAFVQERQKVHCLNTLFSKC-CSLLGVFTCT 200 (200)
Q Consensus 168 ~q~~i~~~~~~K~~~L~~ll~~~-~~~k~iIF~n 200 (200)
.|.++.++..+|...|..+++.. ..+++|||||
T Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~ 284 (417)
T 2i4i_A 251 TQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVE 284 (417)
T ss_dssp EEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECS
T ss_pred eEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEEC
Confidence 99999999999999999999977 4678999997
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.87 E-value=2.5e-22 Score=173.63 Aligned_cols=177 Identities=22% Similarity=0.272 Sum_probs=143.5
Q ss_pred hcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc-----CCCCceeee
Q psy13288 15 KKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS-----FGKGDIFNA 83 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~-----~~~~~~~~~ 83 (200)
.|+|+|+.+..|.. .+.....+.++||++||||||.|+.+.++ .++.+....||.+.... .+..+++ +
T Consensus 86 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-v 164 (414)
T 3eiq_A 86 SGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHII-V 164 (414)
T ss_dssp SCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEE-E
T ss_pred CCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEE-E
Confidence 34555655555553 34444467899999999999999999998 57888888998765221 1233444 7
Q ss_pred cccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhC
Q psy13288 84 GSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHL 150 (200)
Q Consensus 84 ~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l 150 (200)
+|||++. ..++|+ ||||++.+.+|...+ ..++..++++.|+ ++|||++.++..+...++
T Consensus 165 ~T~~~l~~~l~~~~~~~~~~~~vVi-----DEah~~~~~~~~~~~---~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 236 (414)
T 3eiq_A 165 GTPGRVFDMLNRRYLSPKYIKMFVL-----DEADEMLSRGFKDQI---YDIFQKLNSNTQVVLLSATMPSDVLEVTKKFM 236 (414)
T ss_dssp ECHHHHHHHHHHTSSCSTTCCEEEE-----CSHHHHHHTTTHHHH---HHHHTTSCTTCEEEEECSCCCHHHHHHHTTTC
T ss_pred ECHHHHHHHHHcCCcccccCcEEEE-----ECHHHhhccCcHHHH---HHHHHhCCCCCeEEEEEEecCHHHHHHHHHHc
Confidence 9999987 234455 778999999999998 9999999999999 999999999999999999
Q ss_pred CCCeEEEec-cccccccceEEEEEcccc-cHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 151 KDPYEINLM-EELTLKGVTQYYAFVQER-QKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 151 ~~~~~i~v~-~~~~~~~i~q~~i~~~~~-~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
.+|..+.+. ......++.++++.++.. .|...|..+++....+++|||||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~ 288 (414)
T 3eiq_A 237 RDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFIN 288 (414)
T ss_dssp SSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECS
T ss_pred CCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeC
Confidence 999998776 667778899999998765 49999999999888899999996
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.86 E-value=1.4e-21 Score=168.62 Aligned_cols=178 Identities=21% Similarity=0.210 Sum_probs=141.5
Q ss_pred hcCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEEeCCccccccCCCCceeeecccc
Q psy13288 15 KKSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK------VNLPLYVESQGTSKFRSFGKGDIFNAGSVS 87 (200)
Q Consensus 15 ~~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~~gg~~~~~~~~~~~~~~~~TPg 87 (200)
.|+|+|+.+..|. ..+.....++++||++||||||.|+++.++ .++++....||....+......-+.++|||
T Consensus 73 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~ 152 (412)
T 3fht_A 73 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPG 152 (412)
T ss_dssp TTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHH
T ss_pred CCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECch
Confidence 3455666565665 345555677899999999999999998888 368888888887763332222223379999
Q ss_pred ceee-------------eeeeecCCCCChhhcccc-ccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCC
Q psy13288 88 RITR-------------HTFAMTPSVGPIVDRKFG-QIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKD 152 (200)
Q Consensus 88 rl~~-------------~~~v~d~~~~DEAD~ll~-~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~ 152 (200)
++.. .++|+ ||||++++ .+|...+ ..+.+.++++.|+ ++|||++..+..++..++.+
T Consensus 153 ~l~~~~~~~~~~~~~~~~~iVi-----DEah~~~~~~~~~~~~---~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~ 224 (412)
T 3fht_A 153 TVLDWCSKLKFIDPKKIKVFVL-----DEADVMIATQGHQDQS---IRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPD 224 (412)
T ss_dssp HHHHHHTTSCSSCGGGCCEEEE-----ETHHHHHSTTTTHHHH---HHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSS
T ss_pred HHHHHHHhcCCcChhhCcEEEE-----eCHHHHhhcCCcHHHH---HHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCC
Confidence 9862 23344 78899998 6788887 8889999999999 99999999999999999999
Q ss_pred CeEEEec-cccccccceEEEEEccc-ccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 153 PYEINLM-EELTLKGVTQYYAFVQE-RQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 153 ~~~i~v~-~~~~~~~i~q~~i~~~~-~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
|..+.+. .......+.++++.++. .+|...|..++.....+++|||||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~ 274 (412)
T 3fht_A 225 PNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCH 274 (412)
T ss_dssp CEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECS
T ss_pred CeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeC
Confidence 9998876 66777889999998875 579999999999888899999997
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.85 E-value=3.3e-21 Score=166.27 Aligned_cols=177 Identities=39% Similarity=0.558 Sum_probs=142.8
Q ss_pred hcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc----CCCCceeeec
Q psy13288 15 KKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS----FGKGDIFNAG 84 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~----~~~~~~~~~~ 84 (200)
.|+|+|+.+..|.. .+....++.++||++|||+|+.|+.+.++ .++++....||...... .+..++. ++
T Consensus 67 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iv-v~ 145 (400)
T 1s2m_A 67 NGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHIL-VG 145 (400)
T ss_dssp TTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEE-EE
T ss_pred CCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEE-EE
Confidence 34556655566653 34444467899999999999999999998 47888888888764211 1233444 79
Q ss_pred ccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCC
Q psy13288 85 SVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLK 151 (200)
Q Consensus 85 TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~ 151 (200)
||+++. ..++|+ ||||++.+.+|...+ ..++..+++..|+ ++|||++..+.+....++.
T Consensus 146 T~~~l~~~~~~~~~~~~~~~~vIi-----DEaH~~~~~~~~~~~---~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~ 217 (400)
T 1s2m_A 146 TPGRVLDLASRKVADLSDCSLFIM-----DEADKMLSRDFKTII---EQILSFLPPTHQSLLFSATFPLTVKEFMVKHLH 217 (400)
T ss_dssp CHHHHHHHHHTTCSCCTTCCEEEE-----ESHHHHSSHHHHHHH---HHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCS
T ss_pred chHHHHHHHHhCCcccccCCEEEE-----eCchHhhhhchHHHH---HHHHHhCCcCceEEEEEecCCHHHHHHHHHHcC
Confidence 999985 234444 778999999999888 8999999989999 9999999999999999999
Q ss_pred CCeEEEeccccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 152 DPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 152 ~~~~i~v~~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
+|..+.+.......++.+++..++..+|...|..+++....+++|||||
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~ 266 (400)
T 1s2m_A 218 KPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCN 266 (400)
T ss_dssp SCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECS
T ss_pred CCeEEEeccccccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEe
Confidence 9988876666677889999999999999999999999888899999996
No 9
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.85 E-value=5.1e-22 Score=161.86 Aligned_cols=135 Identities=20% Similarity=0.214 Sum_probs=107.4
Q ss_pred cCccEEEecCccc-ccc-----cCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc---C-CCCce
Q psy13288 16 KSDFTLKISCPRS-QLT-----VQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS---F-GKGDI 80 (200)
Q Consensus 16 ~~~~~l~~~~p~~-~~~-----~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~---~-~~~~~ 80 (200)
|+|+|+++..|.. .+. ....++++||++||||||.|+++.++ .++++....||.+.... . ...++
T Consensus 76 GsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I 155 (242)
T 3fe2_A 76 GSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEI 155 (242)
T ss_dssp TSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSE
T ss_pred cCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCE
Confidence 4555556666652 222 22468899999999999999999988 58999999999765211 1 12244
Q ss_pred eeecccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHH
Q psy13288 81 FNAGSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFME 147 (200)
Q Consensus 81 ~~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~ 147 (200)
+ ++||||+. ..++|+ ||||+|++.||..++ ..+++.+++++|+ +||||+|.+++++++
T Consensus 156 ~-v~Tp~~l~~~l~~~~~~~~~~~~lVi-----DEah~l~~~~~~~~~---~~i~~~~~~~~q~~~~SAT~~~~~~~~~~ 226 (242)
T 3fe2_A 156 C-IATPGRLIDFLECGKTNLRRTTYLVL-----DEADRMLDMGFEPQI---RKIVDQIRPDRQTLMWSATWPKEVRQLAE 226 (242)
T ss_dssp E-EECHHHHHHHHHHTSCCCTTCCEEEE-----TTHHHHHHTTCHHHH---HHHHTTSCSSCEEEEEESCCCHHHHHHHH
T ss_pred E-EECHHHHHHHHHcCCCCcccccEEEE-----eCHHHHhhhCcHHHH---HHHHHhCCccceEEEEEeecCHHHHHHHH
Confidence 4 79999997 234455 778999999999998 9999999999999 999999999999999
Q ss_pred HhCCCCeEEEec
Q psy13288 148 KHLKDPYEINLM 159 (200)
Q Consensus 148 ~~l~~~~~i~v~ 159 (200)
.++++|..|.++
T Consensus 227 ~~l~~~~~i~~~ 238 (242)
T 3fe2_A 227 DFLKDYIHINIG 238 (242)
T ss_dssp HHCSSCEEEEEC
T ss_pred HHCCCCEEEEec
Confidence 999999999886
No 10
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.84 E-value=7.2e-21 Score=163.25 Aligned_cols=177 Identities=21% Similarity=0.210 Sum_probs=141.2
Q ss_pred hcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEEeCCcccccc---C--CCCceee
Q psy13288 15 KKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK------VNLPLYVESQGTSKFRS---F--GKGDIFN 82 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~~gg~~~~~~---~--~~~~~~~ 82 (200)
.|+|+|+.+..|.. .+.....+.++||++|||+|+.|+.+.++ .++++....||.+.... + +..++.
T Consensus 54 TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ii- 132 (391)
T 1xti_A 54 SGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV- 132 (391)
T ss_dssp SCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEE-
T ss_pred CCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEE-
Confidence 34556665666653 34444567899999999999999999887 27899999998764111 0 123444
Q ss_pred ecccccee------------eeeeeecCCCCChhhcccc-ccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHH
Q psy13288 83 AGSVSRIT------------RHTFAMTPSVGPIVDRKFG-QIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEK 148 (200)
Q Consensus 83 ~~TPgrl~------------~~~~v~d~~~~DEAD~ll~-~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~ 148 (200)
++||+++. ..++|+ ||||++.+ .+|...+ ..+++..++..|+ ++|||++..+..++..
T Consensus 133 v~T~~~l~~~~~~~~~~~~~~~~vVi-----DEaH~~~~~~~~~~~~---~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~ 204 (391)
T 1xti_A 133 VGTPGRILALARNKSLNLKHIKHFIL-----DECDKMLEQLDMRRDV---QEIFRMTPHEKQVMMFSATLSKEIRPVCRK 204 (391)
T ss_dssp EECHHHHHHHHHTTSSCCTTCSEEEE-----CSHHHHTSSHHHHHHH---HHHHHTSCSSSEEEEEESSCCSTHHHHHHH
T ss_pred EECHHHHHHHHHcCCccccccCEEEE-----eCHHHHhhccchHHHH---HHHHhhCCCCceEEEEEeeCCHHHHHHHHH
Confidence 79999986 233444 78899998 5888887 8899999999999 9999999999999999
Q ss_pred hCCCCeEEEec--cccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 149 HLKDPYEINLM--EELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 149 ~l~~~~~i~v~--~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
++.+|..+.+. .......+.+++..++..+|...|..+++....+++|||||
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~ 258 (391)
T 1xti_A 205 FMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVK 258 (391)
T ss_dssp HCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECS
T ss_pred HcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeC
Confidence 99999988775 34566789999999999999999999999888899999996
No 11
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.84 E-value=9.7e-22 Score=160.91 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=103.7
Q ss_pred hcCccEEEecCccc-cccc---------CCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc----C
Q psy13288 15 KKSDFTLKISCPRS-QLTV---------QELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS----F 75 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~~~---------~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~----~ 75 (200)
.|+|+|+++..|.. .+.. ...++++||++||||||.|+++.++ .++++..+.||.+.... .
T Consensus 69 TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 148 (253)
T 1wrb_A 69 TGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQ 148 (253)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhC
Confidence 34555555566552 2211 2345799999999999999999988 56888889999765211 1
Q ss_pred CCCceeeecccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhh--CCC--CcEE-EEEeeC
Q psy13288 76 GKGDIFNAGSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRS--LEP--KTKV-SAIATF 138 (200)
Q Consensus 76 ~~~~~~~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~--l~~--~~Q~-lfSAT~ 138 (200)
...+++ ++||||+. ..++|+ ||||+|++.+|.+++ ..+++. .+. ++|+ +||||+
T Consensus 149 ~~~~Iv-v~Tp~~l~~~l~~~~~~~~~~~~lVi-----DEah~~~~~~~~~~~---~~i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 149 MGCHLL-VATPGRLVDFIEKNKISLEFCKYIVL-----DEADRMLDMGFEPQI---RKIIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp SCCSEE-EECHHHHHHHHHTTSBCCTTCCEEEE-----ETHHHHHHTTCHHHH---HHHHHSSCCCCGGGCEEEEEESSC
T ss_pred CCCCEE-EECHHHHHHHHHcCCCChhhCCEEEE-----eCHHHHHhCchHHHH---HHHHhhccCCCCCCcEEEEEEEeC
Confidence 123444 79999997 233444 778999999999998 889884 454 7899 999999
Q ss_pred chhHHHHHHHhCCCCeEEEec-cccccccceEEE
Q psy13288 139 PLTVKNFMEKHLKDPYEINLM-EELTLKGVTQYY 171 (200)
Q Consensus 139 ~~~v~~~~~~~l~~~~~i~v~-~~~~~~~i~q~~ 171 (200)
+.++.++++.++++|..+.++ .+...++|+|++
T Consensus 220 ~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~~ 253 (253)
T 1wrb_A 220 PKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEI 253 (253)
T ss_dssp CHHHHHHHHHHCSSCEEEEEC-------------
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCcCCceecC
Confidence 999999999999999999987 667778898874
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.84 E-value=1.3e-20 Score=161.25 Aligned_cols=177 Identities=15% Similarity=0.159 Sum_probs=140.3
Q ss_pred hcCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccccCCCCceeeeccccc
Q psy13288 15 KKSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRSFGKGDIFNAGSVSR 88 (200)
Q Consensus 15 ~~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgr 88 (200)
.|+|+|+.+..|. ..+.....+.++||++|||||+.|+++.++ .++.+....|+..........++. ++||++
T Consensus 53 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-v~T~~~ 131 (395)
T 3pey_A 53 SGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVI-VGTPGT 131 (395)
T ss_dssp TTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEE-EECHHH
T ss_pred CCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEE-EEcHHH
Confidence 4456666666665 334445567899999999999999999998 567777777776543332234444 799999
Q ss_pred ee------------eeeeeecCCCCChhhcccc-ccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCCe
Q psy13288 89 IT------------RHTFAMTPSVGPIVDRKFG-QIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDPY 154 (200)
Q Consensus 89 l~------------~~~~v~d~~~~DEAD~ll~-~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~ 154 (200)
+. ..++|+ ||||++.+ .+|...+ ..+.+.++++.|+ ++|||++..+..++..++.++.
T Consensus 132 l~~~~~~~~~~~~~~~~iIi-----DEah~~~~~~~~~~~~---~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 203 (395)
T 3pey_A 132 VLDLMRRKLMQLQKIKIFVL-----DEADNMLDQQGLGDQC---IRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNAN 203 (395)
T ss_dssp HHHHHHTTCBCCTTCCEEEE-----ETHHHHHHSTTHHHHH---HHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCE
T ss_pred HHHHHHcCCcccccCCEEEE-----EChhhhcCccccHHHH---HHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCe
Confidence 86 233444 77899998 6888887 8889999999999 9999999999999999999999
Q ss_pred EEEec-cccccccceEEEEEccc-ccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 155 EINLM-EELTLKGVTQYYAFVQE-RQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 155 ~i~v~-~~~~~~~i~q~~i~~~~-~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
.+.+. .......+.+.+..+.. .+|...|..+++....+++|||||
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~ 251 (395)
T 3pey_A 204 TLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVA 251 (395)
T ss_dssp EECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECS
T ss_pred EEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeC
Confidence 88776 66667788999988864 579999999998888899999997
No 13
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.83 E-value=3.4e-21 Score=155.24 Aligned_cols=134 Identities=21% Similarity=0.244 Sum_probs=101.1
Q ss_pred cCccEEEecCccc-ccc------cCCCCeeEEEEcCCHHHHHHHHHHhh----cCCcEEEEeCCccccccC----CCCce
Q psy13288 16 KSDFTLKISCPRS-QLT------VQELSLRLVMCVIFREVLLKISSWEK----VNLPLYVESQGTSKFRSF----GKGDI 80 (200)
Q Consensus 16 ~~~~~l~~~~p~~-~~~------~~~~~~~~lIl~PTRELa~Qi~~~~~----~~l~~~~~~gg~~~~~~~----~~~~~ 80 (200)
|+|+|+++..|.. .+. ....++++||++||||||.|+++.++ .++++....||.+..... ...++
T Consensus 67 GsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 146 (228)
T 3iuy_A 67 GTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDI 146 (228)
T ss_dssp TSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSE
T ss_pred CChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCE
Confidence 4556666666652 221 12367899999999999999999998 578899999998762211 12244
Q ss_pred eeecccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHH
Q psy13288 81 FNAGSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFME 147 (200)
Q Consensus 81 ~~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~ 147 (200)
+ ++||||+. ..++|+ ||||++++.+|.+++ ..+++.+++++|+ ++|||+|++++++++
T Consensus 147 i-v~Tp~~l~~~~~~~~~~~~~~~~lVi-----DEah~~~~~~~~~~~---~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 217 (228)
T 3iuy_A 147 I-IATPGRLNDLQMNNSVNLRSITYLVI-----DEADKMLDMEFEPQI---RKILLDVRPDRQTVMTSATWPDTVRQLAL 217 (228)
T ss_dssp E-EECHHHHHHHHHTTCCCCTTCCEEEE-----CCHHHHHHTTCHHHH---HHHHHHSCSSCEEEEEESCCCHHHHHHHH
T ss_pred E-EECHHHHHHHHHcCCcCcccceEEEE-----ECHHHHhccchHHHH---HHHHHhCCcCCeEEEEEeeCCHHHHHHHH
Confidence 3 79999987 233444 778999999999998 9999999999999 999999999999999
Q ss_pred HhCCCCeEEEe
Q psy13288 148 KHLKDPYEINL 158 (200)
Q Consensus 148 ~~l~~~~~i~v 158 (200)
.++++|..|.|
T Consensus 218 ~~l~~p~~i~v 228 (228)
T 3iuy_A 218 SYLKDPMIVYV 228 (228)
T ss_dssp TTCSSCEEEEC
T ss_pred HHCCCCEEEeC
Confidence 99999998864
No 14
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.82 E-value=5e-21 Score=153.48 Aligned_cols=136 Identities=18% Similarity=0.225 Sum_probs=106.3
Q ss_pred cCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh-----c----CCcEEEEeCCcccccc---C-CCCcee
Q psy13288 16 KSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK-----V----NLPLYVESQGTSKFRS---F-GKGDIF 81 (200)
Q Consensus 16 ~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~----~l~~~~~~gg~~~~~~---~-~~~~~~ 81 (200)
|+|+|+.+..|. ..+.....+.++||++||||||.|+++.++ . ++++....||.+.... . +..+++
T Consensus 51 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ii 130 (219)
T 1q0u_A 51 GTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIV 130 (219)
T ss_dssp SHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEE
T ss_pred CChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEE
Confidence 344555556665 334445567899999999999999999887 1 7889999999865221 1 122343
Q ss_pred eecccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHH
Q psy13288 82 NAGSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEK 148 (200)
Q Consensus 82 ~~~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~ 148 (200)
++|||++. ..++|+ ||||++++.+|...+ ..+++.++++.|+ ++|||+|.++.++++.
T Consensus 131 -v~Tp~~l~~~l~~~~~~~~~~~~lVi-----DEah~~~~~~~~~~l---~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 201 (219)
T 1q0u_A 131 -IGTPGRINDFIREQALDVHTAHILVV-----DEADLMLDMGFITDV---DQIAARMPKDLQMLVFSATIPEKLKPFLKK 201 (219)
T ss_dssp -EECHHHHHHHHHTTCCCGGGCCEEEE-----CSHHHHHHTTCHHHH---HHHHHTSCTTCEEEEEESCCCGGGHHHHHH
T ss_pred -EeCHHHHHHHHHcCCCCcCcceEEEE-----cCchHHhhhChHHHH---HHHHHhCCcccEEEEEecCCCHHHHHHHHH
Confidence 79999987 233444 788999999999998 9999999999999 9999999999999999
Q ss_pred hCCCCeEEEecc
Q psy13288 149 HLKDPYEINLME 160 (200)
Q Consensus 149 ~l~~~~~i~v~~ 160 (200)
++++|..+.+..
T Consensus 202 ~~~~p~~~~~~~ 213 (219)
T 1q0u_A 202 YMENPTFVHVLE 213 (219)
T ss_dssp HCSSCEEEECC-
T ss_pred HcCCCeEEEeec
Confidence 999999997753
No 15
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.82 E-value=6.4e-21 Score=154.22 Aligned_cols=135 Identities=25% Similarity=0.294 Sum_probs=107.2
Q ss_pred hcCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEEeCCccccc---cCCCCceeeec
Q psy13288 15 KKSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK------VNLPLYVESQGTSKFR---SFGKGDIFNAG 84 (200)
Q Consensus 15 ~~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~~gg~~~~~---~~~~~~~~~~~ 84 (200)
.|+|+|+.+..|. ..+.....+.++||++||||||.|+++.++ .++++....||.+... .....++. ++
T Consensus 70 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ii-v~ 148 (230)
T 2oxc_A 70 SGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIA-VG 148 (230)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEE-EE
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEE-EE
Confidence 3466666666666 344444567899999999999999999998 2788999999876411 12234544 79
Q ss_pred ccccee------------eeeeeecCCCCChhhcccccc-chhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhC
Q psy13288 85 SVSRIT------------RHTFAMTPSVGPIVDRKFGQI-FNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHL 150 (200)
Q Consensus 85 TPgrl~------------~~~~v~d~~~~DEAD~ll~~~-f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l 150 (200)
||||+. ..++|+ ||||++++.| |.+++ ..+++.++++.|+ ++|||+++++.++++.++
T Consensus 149 Tp~~l~~~~~~~~~~~~~~~~lVi-----DEah~~~~~~~~~~~~---~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~ 220 (230)
T 2oxc_A 149 SPGRIKQLIELDYLNPGSIRLFIL-----DEADKLLEEGSFQEQI---NWIYSSLPASKQMLAVSATYPEFLANALTKYM 220 (230)
T ss_dssp CHHHHHHHHHTTSSCGGGCCEEEE-----SSHHHHHSTTSSHHHH---HHHHHHSCSSCEEEEEESCCCHHHHHHHTTTC
T ss_pred CHHHHHHHHhcCCcccccCCEEEe-----CCchHhhcCcchHHHH---HHHHHhCCCCCeEEEEEeccCHHHHHHHHHHc
Confidence 999986 234445 7789999997 99988 9999999999999 999999999999999999
Q ss_pred CCCeEEEe
Q psy13288 151 KDPYEINL 158 (200)
Q Consensus 151 ~~~~~i~v 158 (200)
++|..|.+
T Consensus 221 ~~p~~i~~ 228 (230)
T 2oxc_A 221 RDPTFVRL 228 (230)
T ss_dssp SSCEEECC
T ss_pred CCCeEEEc
Confidence 99998864
No 16
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.82 E-value=6.3e-21 Score=156.62 Aligned_cols=136 Identities=19% Similarity=0.195 Sum_probs=107.9
Q ss_pred hcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc----CCCCceeeec
Q psy13288 15 KKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS----FGKGDIFNAG 84 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~----~~~~~~~~~~ 84 (200)
.|+|+|+++..|.. .+.....++++||++||||||.|+++.++ .++++..+.||.+..+. .+..+++ ++
T Consensus 89 TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~-v~ 167 (249)
T 3ber_A 89 TGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHII-IA 167 (249)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEE-EE
T ss_pred CCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEE-EE
Confidence 44566666666663 34445567899999999999999999988 48899999999764211 1233444 79
Q ss_pred cccceee-------------eeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhC
Q psy13288 85 SVSRITR-------------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHL 150 (200)
Q Consensus 85 TPgrl~~-------------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l 150 (200)
||||+.. .++|+ ||||++++.+|...+ ..+++.+++++|+ +||||++.+++++++.++
T Consensus 168 Tp~~l~~~l~~~~~~~l~~~~~lVi-----DEah~l~~~~~~~~l---~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l 239 (249)
T 3ber_A 168 TPGRLIDHLENTKGFNLRALKYLVM-----DEADRILNMDFETEV---DKILKVIPRDRKTFLFSATMTKKVQKLQRAAL 239 (249)
T ss_dssp CHHHHHHHHHHSTTCCCTTCCEEEE-----CSHHHHHHTTCHHHH---HHHHHSSCSSSEEEEEESSCCHHHHHHHHHHC
T ss_pred CHHHHHHHHHcCCCcCccccCEEEE-----cChhhhhccChHHHH---HHHHHhCCCCCeEEEEeccCCHHHHHHHHHHC
Confidence 9999862 23333 788999999999998 9999999999999 999999999999999999
Q ss_pred CCCeEEEec
Q psy13288 151 KDPYEINLM 159 (200)
Q Consensus 151 ~~~~~i~v~ 159 (200)
++|..|.++
T Consensus 240 ~~p~~i~v~ 248 (249)
T 3ber_A 240 KNPVKCAVS 248 (249)
T ss_dssp SSCEEEECC
T ss_pred CCCEEEEec
Confidence 999998753
No 17
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.82 E-value=4.2e-21 Score=164.66 Aligned_cols=176 Identities=25% Similarity=0.367 Sum_probs=105.6
Q ss_pred cCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc---CCCCceeeeccc
Q psy13288 16 KSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS---FGKGDIFNAGSV 86 (200)
Q Consensus 16 ~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~---~~~~~~~~~~TP 86 (200)
|+|+|+.+..|. ..+.....++++||++|||+|+.|+.+.++ .++++....||.+.... ....++. ++||
T Consensus 68 GsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~-v~T~ 146 (394)
T 1fuu_A 68 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIV-VGTP 146 (394)
T ss_dssp SHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEE-EECH
T ss_pred CChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEE-EECH
Confidence 455555555555 234445567899999999999999999887 57889999998764111 1123343 7999
Q ss_pred ccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCC
Q psy13288 87 SRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDP 153 (200)
Q Consensus 87 grl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~ 153 (200)
+++. ..++|+ ||||++.+.+|...+ ..++..++++.|+ ++|||++..+.+....++.+|
T Consensus 147 ~~l~~~~~~~~~~~~~~~~vIi-----DEah~~~~~~~~~~~---~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 218 (394)
T 1fuu_A 147 GRVFDNIQRRRFRTDKIKMFIL-----DEADEMLSSGFKEQI---YQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNP 218 (394)
T ss_dssp HHHHHHHHTTSSCCTTCCEEEE-----ETHHHHHHTTCHHHH---HHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSC
T ss_pred HHHHHHHHhCCcchhhCcEEEE-----EChHHhhCCCcHHHH---HHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCC
Confidence 9986 234444 778999999999988 8999999999999 999999999999999999999
Q ss_pred eEEEec-cccccccceEEEEEccccc-HHHHHHHHHhhCCCCeEEEEeC
Q psy13288 154 YEINLM-EELTLKGVTQYYAFVQERQ-KVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 154 ~~i~v~-~~~~~~~i~q~~i~~~~~~-K~~~L~~ll~~~~~~k~iIF~n 200 (200)
..+.+. ......++.+++..++..+ |...|..+++....+++|||||
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~ 267 (394)
T 1fuu_A 219 VRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCN 267 (394)
T ss_dssp EEEEECC------------------------------------------
T ss_pred eEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEEC
Confidence 998876 6667778999999887665 8899999988877889999996
No 18
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.81 E-value=8.4e-21 Score=154.31 Aligned_cols=134 Identities=19% Similarity=0.215 Sum_probs=100.6
Q ss_pred CccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccccC-----CCCceeeecc
Q psy13288 17 SDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRSF-----GKGDIFNAGS 85 (200)
Q Consensus 17 ~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~~-----~~~~~~~~~T 85 (200)
+|+|+.+..|.. .+.....+.++||++||||||.|+++.++ .++++....||.+..... +..++. ++|
T Consensus 78 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Il-v~T 156 (237)
T 3bor_A 78 TGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIV-VGT 156 (237)
T ss_dssp HHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEE-EEC
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEE-EEC
Confidence 445555566652 34444567899999999999999999998 468888889987753221 113443 799
Q ss_pred cccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCC
Q psy13288 86 VSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKD 152 (200)
Q Consensus 86 Pgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~ 152 (200)
|||+. ..++|+ ||||++++.+|...+ ..+++.++++.|+ ++|||++.++.++++.++++
T Consensus 157 p~~l~~~l~~~~~~~~~~~~lVi-----DEah~~~~~~~~~~l---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~ 228 (237)
T 3bor_A 157 PGRVFDMLNRRYLSPKWIKMFVL-----DEADEMLSRGFKDQI---YEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRD 228 (237)
T ss_dssp HHHHHHHHHTTSSCSTTCCEEEE-----ESHHHHHHTTCHHHH---HHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSS
T ss_pred HHHHHHHHHhCCcCcccCcEEEE-----CCchHhhccCcHHHH---HHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCC
Confidence 99986 234444 778999999999998 9999999999999 99999999999999999999
Q ss_pred CeEEEec
Q psy13288 153 PYEINLM 159 (200)
Q Consensus 153 ~~~i~v~ 159 (200)
|..|.++
T Consensus 229 p~~i~v~ 235 (237)
T 3bor_A 229 PIRILVK 235 (237)
T ss_dssp CEEEC--
T ss_pred CEEEEec
Confidence 9998764
No 19
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.80 E-value=1.9e-20 Score=151.58 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=104.9
Q ss_pred hcCccEEEecCcccc-cc----cCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc---cCCCCcee
Q psy13288 15 KKSDFTLKISCPRSQ-LT----VQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR---SFGKGDIF 81 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~-~~----~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~---~~~~~~~~ 81 (200)
.|+|+|+++..|..+ +. ...+++++||++||||||.|+.+.++ .++++....||.+... ..+..+++
T Consensus 71 TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ii 150 (236)
T 2pl3_A 71 TGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINIL 150 (236)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEE
T ss_pred CCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEE
Confidence 345666666666532 21 12357899999999999999999998 4588999999876521 12234444
Q ss_pred eeccccceee-------------eeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHH
Q psy13288 82 NAGSVSRITR-------------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFME 147 (200)
Q Consensus 82 ~~~TPgrl~~-------------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~ 147 (200)
++|||++.. .++|+ ||||++++.+|.+.+ ..+++.+++++|+ ++|||++.+++++++
T Consensus 151 -v~Tp~~l~~~l~~~~~~~~~~~~~lVi-----DEah~~~~~~~~~~~---~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 221 (236)
T 2pl3_A 151 -VCTPGRLLQHMDETVSFHATDLQMLVL-----DEADRILDMGFADTM---NAVIENLPKKRQTLLFSATQTKSVKDLAR 221 (236)
T ss_dssp -EECHHHHHHHHHHCSSCCCTTCCEEEE-----TTHHHHHHTTTHHHH---HHHHHTSCTTSEEEEEESSCCHHHHHHHH
T ss_pred -EECHHHHHHHHHhcCCcccccccEEEE-----eChHHHhcCCcHHHH---HHHHHhCCCCCeEEEEEeeCCHHHHHHHH
Confidence 799999962 23333 888999999999998 9999999999999 999999999999999
Q ss_pred HhCCCCeEEEec
Q psy13288 148 KHLKDPYEINLM 159 (200)
Q Consensus 148 ~~l~~~~~i~v~ 159 (200)
.++++|..|.++
T Consensus 222 ~~~~~p~~i~~~ 233 (236)
T 2pl3_A 222 LSLKNPEYVWVH 233 (236)
T ss_dssp HSCSSCEEEECC
T ss_pred HhCCCCEEEEeC
Confidence 999999999775
No 20
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.80 E-value=3.5e-20 Score=146.61 Aligned_cols=133 Identities=22% Similarity=0.322 Sum_probs=104.8
Q ss_pred hcCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEEeCCccccc---cC-CCCceeee
Q psy13288 15 KKSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK------VNLPLYVESQGTSKFR---SF-GKGDIFNA 83 (200)
Q Consensus 15 ~~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~~gg~~~~~---~~-~~~~~~~~ 83 (200)
.|+|+|+++..|. ..+.....++++||++|||||+.|+++.++ .++++....||.+... .. +..++. +
T Consensus 49 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~-v 127 (206)
T 1vec_A 49 NGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVV-I 127 (206)
T ss_dssp SSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEE-E
T ss_pred CCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEE-E
Confidence 3456666566666 334455567899999999999999999987 2788999999876521 11 223443 7
Q ss_pred cccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhC
Q psy13288 84 GSVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHL 150 (200)
Q Consensus 84 ~TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l 150 (200)
+|||++. ..++|+ ||||++++.+|...+ ..+++.++++.|+ ++|||+|+++.++++.++
T Consensus 128 ~T~~~l~~~~~~~~~~~~~~~~lVi-----DEah~~~~~~~~~~l---~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l 199 (206)
T 1vec_A 128 ATPGRILDLIKKGVAKVDHVQMIVL-----DEADKLLSQDFVQIM---EDIILTLPKNRQILLYSATFPLSVQKFMNSHL 199 (206)
T ss_dssp ECHHHHHHHHHTTCSCCTTCCEEEE-----ETHHHHTSTTTHHHH---HHHHHHSCTTCEEEEEESCCCHHHHHHHHHHC
T ss_pred eCHHHHHHHHHcCCcCcccCCEEEE-----EChHHhHhhCcHHHH---HHHHHhCCccceEEEEEeeCCHHHHHHHHHHc
Confidence 9999985 234444 778999999999998 9999999999999 999999999999999999
Q ss_pred CCCeEE
Q psy13288 151 KDPYEI 156 (200)
Q Consensus 151 ~~~~~i 156 (200)
++|..|
T Consensus 200 ~~p~~i 205 (206)
T 1vec_A 200 EKPYEI 205 (206)
T ss_dssp SSCEEE
T ss_pred CCCeEe
Confidence 999876
No 21
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.79 E-value=6e-20 Score=147.19 Aligned_cols=135 Identities=21% Similarity=0.258 Sum_probs=103.0
Q ss_pred cCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc---CCCCceeeeccc
Q psy13288 16 KSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS---FGKGDIFNAGSV 86 (200)
Q Consensus 16 ~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~---~~~~~~~~~~TP 86 (200)
|+|+|+.+..|. ..+.....+.++||++||||||.|+++.++ .++++....||.+.... +...++. ++||
T Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ii-v~Tp 139 (224)
T 1qde_A 61 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIV-VGTP 139 (224)
T ss_dssp TSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEE-EECH
T ss_pred CCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEE-EECH
Confidence 455565556665 345555678899999999999999999887 47888999998875321 2233443 7999
Q ss_pred ccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCC
Q psy13288 87 SRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDP 153 (200)
Q Consensus 87 grl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~ 153 (200)
+++. ..++|+ ||||++++.+|...+ ..+++.++++.|+ ++|||++.++.++++.++++|
T Consensus 140 ~~l~~~~~~~~~~~~~~~~iVi-----DEah~~~~~~~~~~l---~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p 211 (224)
T 1qde_A 140 GRVFDNIQRRRFRTDKIKMFIL-----DEADEMLSSGFKEQI---YQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNP 211 (224)
T ss_dssp HHHHHHHHTTSSCCTTCCEEEE-----ETHHHHHHTTCHHHH---HHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred HHHHHHHHhCCcchhhCcEEEE-----cChhHHhhhhhHHHH---HHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCC
Confidence 9986 234444 778999999999988 9999999999999 999999999999999999999
Q ss_pred eEEEec
Q psy13288 154 YEINLM 159 (200)
Q Consensus 154 ~~i~v~ 159 (200)
..+.++
T Consensus 212 ~~i~~~ 217 (224)
T 1qde_A 212 VRILVK 217 (224)
T ss_dssp EEEC--
T ss_pred EEEEec
Confidence 998775
No 22
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=1.9e-19 Score=163.78 Aligned_cols=177 Identities=14% Similarity=0.096 Sum_probs=125.0
Q ss_pred hcCccEEEecCcccc-ccc----CCCCeeEEEEcCCHHHHHHHHHHhh---------cCCcEEEEeCCccccccC-----
Q psy13288 15 KKSDFTLKISCPRSQ-LTV----QELSLRLVMCVIFREVLLKISSWEK---------VNLPLYVESQGTSKFRSF----- 75 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~-~~~----~~~~~~~lIl~PTRELa~Qi~~~~~---------~~l~~~~~~gg~~~~~~~----- 75 (200)
.|+|+|+++..|..+ +.. ....+++||++||||||.|+.+.++ ..+.+....||.......
T Consensus 69 TGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~ 148 (579)
T 3sqw_A 69 TGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNK 148 (579)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhc
Confidence 456677777777632 211 2346899999999999999999988 246688888987642110
Q ss_pred CCCceeeecccccee-------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhC-------CCCcEE-EE
Q psy13288 76 GKGDIFNAGSVSRIT-------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSL-------EPKTKV-SA 134 (200)
Q Consensus 76 ~~~~~~~~~TPgrl~-------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l-------~~~~Q~-lf 134 (200)
+..+++ ++||||+. ..++|+ ||||+|++.||.+++ ..|+..+ +.+.|+ +|
T Consensus 149 ~~~~Il-V~Tp~~l~~~l~~~~~~~~~~~~~lVi-----DEah~l~~~gf~~~~---~~i~~~l~~~~~~~~~~~~~l~~ 219 (579)
T 3sqw_A 149 LRPNIV-IATPGRLIDVLEKYSNKFFRFVDYKVL-----DEADRLLEIGFRDDL---ETISGILNEKNSKSADNIKTLLF 219 (579)
T ss_dssp HCCSEE-EECHHHHHHHHHHHHHHHCTTCCEEEE-----ETHHHHTSTTTHHHH---HHHHHHHHHHCSSCTTCCEEEEE
T ss_pred CCCCEE-EECHHHHHHHHHhccccccccCCEEEE-----EChHHhhcCCCHHHH---HHHHHHhhhhhcccccCceEEEE
Confidence 123444 79999996 233455 778999999999998 5555544 237799 99
Q ss_pred EeeCchhHHHHHHHhCCCCeEEEec-----cccccccceEEEEEcccc-cH-H---HHHHHHHhh-CCCCeEEEEeC
Q psy13288 135 IATFPLTVKNFMEKHLKDPYEINLM-----EELTLKGVTQYYAFVQER-QK-V---HCLNTLFSK-CCSLLGVFTCT 200 (200)
Q Consensus 135 SAT~~~~v~~~~~~~l~~~~~i~v~-----~~~~~~~i~q~~i~~~~~-~K-~---~~L~~ll~~-~~~~k~iIF~n 200 (200)
|||++..+..++..++.+|..+.+. .......+.+.+..++.. ++ . ..+...+.. ....++||||+
T Consensus 220 SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~ 296 (579)
T 3sqw_A 220 SATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAP 296 (579)
T ss_dssp ESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECS
T ss_pred eccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECC
Confidence 9999999999999999998777553 334456788888877753 22 2 233333333 35679999996
No 23
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.78 E-value=6.9e-19 Score=149.07 Aligned_cols=173 Identities=18% Similarity=0.264 Sum_probs=134.3
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc---cCCCCceeeeccc
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR---SFGKGDIFNAGSV 86 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~---~~~~~~~~~~~TP 86 (200)
.|+|+|+.+..|..+.....++.++||++|||+|+.|+.+.++ .++++....||..... .....++. ++||
T Consensus 53 TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ii-v~T~ 131 (367)
T 1hv8_A 53 TGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIV-VGTP 131 (367)
T ss_dssp SSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEE-EECH
T ss_pred CCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEE-EecH
Confidence 3455555555555333333467899999999999999999998 4788888899876421 11133444 7999
Q ss_pred ccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCC
Q psy13288 87 SRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDP 153 (200)
Q Consensus 87 grl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~ 153 (200)
+++. ..++|+ ||||.+.+.+|...+ ..++..++++.|+ ++|||.+.++.+....++.++
T Consensus 132 ~~l~~~~~~~~~~~~~~~~iIi-----DEah~~~~~~~~~~~---~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 203 (367)
T 1hv8_A 132 GRILDHINRGTLNLKNVKYFIL-----DEADEMLNMGFIKDV---EKILNACNKDKRILLFSATMPREILNLAKKYMGDY 203 (367)
T ss_dssp HHHHHHHHTTCSCTTSCCEEEE-----ETHHHHHTTTTHHHH---HHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSE
T ss_pred HHHHHHHHcCCcccccCCEEEE-----eCchHhhhhchHHHH---HHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCC
Confidence 9987 233444 778999999999888 8999999889999 999999999999999999988
Q ss_pred eEEEeccccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 154 YEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 154 ~~i~v~~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
..+... ...++.+.++.++..+|...|..+++. ...++|||||
T Consensus 204 ~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~lvf~~ 246 (367)
T 1hv8_A 204 SFIKAK---INANIEQSYVEVNENERFEALCRLLKN-KEFYGLVFCK 246 (367)
T ss_dssp EEEECC---SSSSSEEEEEECCGGGHHHHHHHHHCS-TTCCEEEECS
T ss_pred eEEEec---CCCCceEEEEEeChHHHHHHHHHHHhc-CCCcEEEEEC
Confidence 777543 224788999999999999999999873 5679999996
No 24
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.78 E-value=6.9e-20 Score=151.45 Aligned_cols=130 Identities=15% Similarity=0.160 Sum_probs=99.8
Q ss_pred cCccEEEecCcccc-cc----cCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc---C-CCCcee
Q psy13288 16 KSDFTLKISCPRSQ-LT----VQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS---F-GKGDIF 81 (200)
Q Consensus 16 ~~~~~l~~~~p~~~-~~----~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~---~-~~~~~~ 81 (200)
|+|+|+.+..|..+ +. ...++.++||++||||||.|+++.++ .+.++....||.+.... . ...+++
T Consensus 101 GsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ii 180 (262)
T 3ly5_A 101 GSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINII 180 (262)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEE
T ss_pred CCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEE
Confidence 45566666666532 21 12357899999999999999999998 56788889998765211 0 123444
Q ss_pred eeccccceee-------------eeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHH
Q psy13288 82 NAGSVSRITR-------------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFME 147 (200)
Q Consensus 82 ~~~TPgrl~~-------------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~ 147 (200)
++||||+.. .++|+ ||||+|++.||.+++ ..+++.+++++|+ +||||++.+++++++
T Consensus 181 -v~Tp~~l~~~~~~~~~~~~~~l~~lVi-----DEah~l~~~~~~~~l---~~i~~~~~~~~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 181 -VATPGRLLDHMQNTPGFMYKNLQCLVI-----DEADRILDVGFEEEL---KQIIKLLPTRRQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp -EECHHHHHHHHHHCTTCCCTTCCEEEE-----CSHHHHHHTTCHHHH---HHHHHHSCSSSEEEEECSSCCHHHHHHHH
T ss_pred -EEcHHHHHHHHHccCCcccccCCEEEE-----cChHHHhhhhHHHHH---HHHHHhCCCCCeEEEEEecCCHHHHHHHH
Confidence 799999862 23334 788999999999998 9999999999999 999999999999999
Q ss_pred HhCCCCe
Q psy13288 148 KHLKDPY 154 (200)
Q Consensus 148 ~~l~~~~ 154 (200)
.+++++.
T Consensus 252 ~~l~~~~ 258 (262)
T 3ly5_A 252 ISLKKEP 258 (262)
T ss_dssp HHCSSCC
T ss_pred HHcCCCC
Confidence 9998653
No 25
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.78 E-value=2.9e-19 Score=161.30 Aligned_cols=177 Identities=14% Similarity=0.093 Sum_probs=124.5
Q ss_pred hcCccEEEecCcccc-ccc----CCCCeeEEEEcCCHHHHHHHHHHhh---------cCCcEEEEeCCcccccc-----C
Q psy13288 15 KKSDFTLKISCPRSQ-LTV----QELSLRLVMCVIFREVLLKISSWEK---------VNLPLYVESQGTSKFRS-----F 75 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~-~~~----~~~~~~~lIl~PTRELa~Qi~~~~~---------~~l~~~~~~gg~~~~~~-----~ 75 (200)
.|+|+|+++..|..+ +.. ....+++|||+||||||.|+++.++ ....+....||...... .
T Consensus 120 TGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 199 (563)
T 3i5x_A 120 TGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNK 199 (563)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhc
Confidence 456677777777632 211 2346799999999999999999987 24668888898764211 1
Q ss_pred CCCceeeecccccee-------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhC-------CCCcEE-EE
Q psy13288 76 GKGDIFNAGSVSRIT-------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSL-------EPKTKV-SA 134 (200)
Q Consensus 76 ~~~~~~~~~TPgrl~-------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l-------~~~~Q~-lf 134 (200)
+..+++ ++||||+. ..++|+ ||||+|++.||.+++ ..++..+ +.+.|+ +|
T Consensus 200 ~~~~Ii-v~Tp~~l~~~l~~~~~~~~~~~~~lVi-----DEah~l~~~~f~~~~---~~i~~~l~~~~~~~~~~~~~l~~ 270 (563)
T 3i5x_A 200 LRPNIV-IATPGRLIDVLEKYSNKFFRFVDYKVL-----DEADRLLEIGFRDDL---ETISGILNEKNSKSADNIKTLLF 270 (563)
T ss_dssp HCCSEE-EECHHHHHHHHHHHHHHHCTTCCEEEE-----ETHHHHTSTTTHHHH---HHHHHHHHHHCSSCTTCCEEEEE
T ss_pred CCCCEE-EECcHHHHHHHHhccccccccceEEEE-----eCHHHHhccchHHHH---HHHHHhhhhccccCccCceEEEE
Confidence 123444 79999996 234455 778999999999998 6665544 347899 99
Q ss_pred EeeCchhHHHHHHHhCCCCeEEEec-----cccccccceEEEEEcccc-cHH----HHHHHHHhh-CCCCeEEEEeC
Q psy13288 135 IATFPLTVKNFMEKHLKDPYEINLM-----EELTLKGVTQYYAFVQER-QKV----HCLNTLFSK-CCSLLGVFTCT 200 (200)
Q Consensus 135 SAT~~~~v~~~~~~~l~~~~~i~v~-----~~~~~~~i~q~~i~~~~~-~K~----~~L~~ll~~-~~~~k~iIF~n 200 (200)
|||++..+.+++..++.++..+.+. .......+.+.+..++.. ++. ..+...+.. ....++|||||
T Consensus 271 SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~ 347 (563)
T 3i5x_A 271 SATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAP 347 (563)
T ss_dssp ESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECS
T ss_pred EccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcC
Confidence 9999999999999999998777553 234456688888877653 232 223333333 35679999996
No 26
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.77 E-value=2.5e-19 Score=141.63 Aligned_cols=134 Identities=20% Similarity=0.232 Sum_probs=103.9
Q ss_pred cCccEEEecCccc-cccc---CCCCeeEEEEcCCHHHHHHHHHHhh---cCCcEEEEeCCcccccc----CCCCceeeec
Q psy13288 16 KSDFTLKISCPRS-QLTV---QELSLRLVMCVIFREVLLKISSWEK---VNLPLYVESQGTSKFRS----FGKGDIFNAG 84 (200)
Q Consensus 16 ~~~~~l~~~~p~~-~~~~---~~~~~~~lIl~PTRELa~Qi~~~~~---~~l~~~~~~gg~~~~~~----~~~~~~~~~~ 84 (200)
|+|+|+.+..|.. .+.. ...++++||++|||||+.|+.+.++ ..+++....||.+.... ....++. ++
T Consensus 48 GsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-v~ 126 (207)
T 2gxq_A 48 GTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAV-VA 126 (207)
T ss_dssp TSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEE-EE
T ss_pred CChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEE-EE
Confidence 4555555555542 2221 2457899999999999999999998 46888889998764111 0123443 79
Q ss_pred ccccee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCC
Q psy13288 85 SVSRIT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLK 151 (200)
Q Consensus 85 TPgrl~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~ 151 (200)
|||++. ..++|+ ||||++++.+|...+ ..+++.+++++|+ ++|||++.++.++++.+++
T Consensus 127 T~~~l~~~~~~~~~~~~~~~~iVi-----DEah~~~~~~~~~~~---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 198 (207)
T 2gxq_A 127 TPGRALDYLRQGVLDLSRVEVAVL-----DEADEMLSMGFEEEV---EALLSATPPSRQTLLFSATLPSWAKRLAERYMK 198 (207)
T ss_dssp CHHHHHHHHHHTSSCCTTCSEEEE-----ESHHHHHHTTCHHHH---HHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCS
T ss_pred CHHHHHHHHHcCCcchhhceEEEE-----EChhHhhccchHHHH---HHHHHhCCccCeEEEEEEecCHHHHHHHHHHcC
Confidence 999986 234455 778999999999998 9999999999999 9999999999999999999
Q ss_pred CCeEEEe
Q psy13288 152 DPYEINL 158 (200)
Q Consensus 152 ~~~~i~v 158 (200)
+|..+.+
T Consensus 199 ~p~~i~~ 205 (207)
T 2gxq_A 199 NPVLINV 205 (207)
T ss_dssp SCEEEEC
T ss_pred CCeEEEc
Confidence 9998865
No 27
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.77 E-value=6.1e-19 Score=158.38 Aligned_cols=177 Identities=18% Similarity=0.192 Sum_probs=125.8
Q ss_pred hcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccccCCCCceeeeccccc
Q psy13288 15 KKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRSFGKGDIFNAGSVSR 88 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgr 88 (200)
.|+|+|+.+..|.. .+.....+.++||++|||+|+.|+.+.++ .++.+....|+..........+++ ++||++
T Consensus 167 TGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iv-v~T~~~ 245 (508)
T 3fho_A 167 SGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIV-IGTPGT 245 (508)
T ss_dssp SSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC----------CCCCSEE-EECHHH
T ss_pred CCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCCEE-EECHHH
Confidence 45666766666653 34455567899999999999999999998 446666666665542222234444 799999
Q ss_pred ee------------eeeeeecCCCCChhhcccc-ccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCCe
Q psy13288 89 IT------------RHTFAMTPSVGPIVDRKFG-QIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDPY 154 (200)
Q Consensus 89 l~------------~~~~v~d~~~~DEAD~ll~-~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~ 154 (200)
+. ..++|+ ||||++.+ .+|...+ ..+.+.++++.|+ ++|||++..+..+...++.++.
T Consensus 246 l~~~l~~~~~~~~~~~lIIi-----DEaH~~~~~~~~~~~~---~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~ 317 (508)
T 3fho_A 246 VMDLMKRRQLDARDIKVFVL-----DEADNMLDQQGLGDQS---MRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNAN 317 (508)
T ss_dssp HHHHHHTTCSCCTTCCEEEE-----CCHHHHTTC--CHHHH---HHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCE
T ss_pred HHHHHHcCCccccCCCEEEE-----echhhhcccCCcHHHH---HHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCe
Confidence 87 233444 78899998 6788887 8899999999999 9999999999999999999998
Q ss_pred EEEec-cccccccceEEEEEcc-cccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 155 EINLM-EELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 155 ~i~v~-~~~~~~~i~q~~i~~~-~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
.+.+. .......+.+.+..+. ...|...+..+++....+++|||||
T Consensus 318 ~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~ 365 (508)
T 3fho_A 318 EIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCK 365 (508)
T ss_dssp EECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCS
T ss_pred EEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 88776 5666778888888885 4568899999998888899999997
No 28
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.77 E-value=1.3e-19 Score=147.48 Aligned_cols=136 Identities=18% Similarity=0.184 Sum_probs=100.7
Q ss_pred hcCccEEEecCccc-ccc-cCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc-----CCCCceee
Q psy13288 15 KKSDFTLKISCPRS-QLT-VQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS-----FGKGDIFN 82 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~~-~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~-----~~~~~~~~ 82 (200)
.|+|+|+++..|.. .+. ....++++||++||||||.|+++.++ .++++....||...... .+..+++
T Consensus 75 TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~- 153 (245)
T 3dkp_A 75 TGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDIL- 153 (245)
T ss_dssp TTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEE-
T ss_pred CCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEE-
Confidence 34555666666662 232 33467899999999999999999998 47777777776543211 1223444
Q ss_pred ecccccee--------------eeeeeecCCCCChhhcccc---ccchhhhhcHHHHHhhC-CCCcEE-EEEeeCchhHH
Q psy13288 83 AGSVSRIT--------------RHTFAMTPSVGPIVDRKFG---QIFNGQILVPKHVLRSL-EPKTKV-SAIATFPLTVK 143 (200)
Q Consensus 83 ~~TPgrl~--------------~~~~v~d~~~~DEAD~ll~---~~f~~~i~~i~~i~~~l-~~~~Q~-lfSAT~~~~v~ 143 (200)
++||||+. ..++|+ ||||++++ .+|.+.+ ..++..+ +++.|+ +||||+|+++.
T Consensus 154 v~Tp~~l~~~l~~~~~~~~~~~~~~lVi-----DEah~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~SAT~~~~v~ 225 (245)
T 3dkp_A 154 VTTPNRLIYLLKQDPPGIDLASVEWLVV-----DESDKLFEDGKTGFRDQL---ASIFLACTSHKVRRAMFSATFAYDVE 225 (245)
T ss_dssp EECHHHHHHHHHSSSCSCCCTTCCEEEE-----SSHHHHHHHC--CHHHHH---HHHHHHCCCTTCEEEEEESSCCHHHH
T ss_pred EECHHHHHHHHHhCCCCcccccCcEEEE-----eChHHhcccccccHHHHH---HHHHHhcCCCCcEEEEEeccCCHHHH
Confidence 79999996 122344 78899998 5788887 8888776 457899 99999999999
Q ss_pred HHHHHhCCCCeEEEec
Q psy13288 144 NFMEKHLKDPYEINLM 159 (200)
Q Consensus 144 ~~~~~~l~~~~~i~v~ 159 (200)
++++.++++|..+.++
T Consensus 226 ~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 226 QWCKLNLDNVISVSIG 241 (245)
T ss_dssp HHHHHHSSSCEEEEEC
T ss_pred HHHHHhCCCCEEEEeC
Confidence 9999999999999876
No 29
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.77 E-value=1.9e-19 Score=143.98 Aligned_cols=134 Identities=19% Similarity=0.196 Sum_probs=103.5
Q ss_pred cCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEEeCCcccccc---C--CCCceeee
Q psy13288 16 KSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK------VNLPLYVESQGTSKFRS---F--GKGDIFNA 83 (200)
Q Consensus 16 ~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~~gg~~~~~~---~--~~~~~~~~ 83 (200)
|+|+|+.+..|.. .+....+.+++||++|||||+.|+++.++ .++++....||.+.... + +..++. +
T Consensus 61 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~-v 139 (220)
T 1t6n_A 61 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV-V 139 (220)
T ss_dssp TSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEE-E
T ss_pred CCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEE-E
Confidence 4555555666653 34444557899999999999999999888 27899999998764111 1 122443 7
Q ss_pred cccccee------------eeeeeecCCCCChhhcccc-ccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHh
Q psy13288 84 GSVSRIT------------RHTFAMTPSVGPIVDRKFG-QIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKH 149 (200)
Q Consensus 84 ~TPgrl~------------~~~~v~d~~~~DEAD~ll~-~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~ 149 (200)
+||+++. ..++|+ ||||++++ .+|...+ ..+++.++++.|+ ++|||++.++.++++.+
T Consensus 140 ~T~~~l~~~~~~~~~~~~~~~~lVi-----DEah~~~~~~~~~~~~---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 211 (220)
T 1t6n_A 140 GTPGRILALARNKSLNLKHIKHFIL-----DECDKMLEQLDMRRDV---QEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 211 (220)
T ss_dssp ECHHHHHHHHHTTSSCCTTCCEEEE-----ESHHHHHSSHHHHHHH---HHHHHTSCSSSEEEEEESCCCTTTHHHHHTT
T ss_pred eCHHHHHHHHHhCCCCcccCCEEEE-----cCHHHHhcccCcHHHH---HHHHHhCCCcCeEEEEEeecCHHHHHHHHHH
Confidence 9999986 234444 77899997 5888887 8999999999999 99999999999999999
Q ss_pred CCCCeEEEe
Q psy13288 150 LKDPYEINL 158 (200)
Q Consensus 150 l~~~~~i~v 158 (200)
+++|..|.+
T Consensus 212 ~~~p~~i~v 220 (220)
T 1t6n_A 212 MQDPMEIFV 220 (220)
T ss_dssp CSSCEEEEC
T ss_pred cCCCeEEeC
Confidence 999998753
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.73 E-value=3.9e-19 Score=154.71 Aligned_cols=167 Identities=10% Similarity=-0.021 Sum_probs=119.0
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh----cCCcEEEEeCCcccc------ccC--CCCceee
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK----VNLPLYVESQGTSKF------RSF--GKGDIFN 82 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~----~~l~~~~~~gg~~~~------~~~--~~~~~~~ 82 (200)
.|+|+|+.+..|..... .++.++||++||||||.|+++.++ .++++..+.||.+.. +.+ +..+++
T Consensus 45 TGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Ii- 121 (414)
T 3oiy_A 45 TGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHIL- 121 (414)
T ss_dssp SSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEE-
T ss_pred CCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEE-
Confidence 34566665555543322 457899999999999999999999 378999999998651 011 124554
Q ss_pred ecccccee----------eeeeeecCCCCChh----------hcccc-ccchhh-hhcHHHHHhhCC-----------CC
Q psy13288 83 AGSVSRIT----------RHTFAMTPSVGPIV----------DRKFG-QIFNGQ-ILVPKHVLRSLE-----------PK 129 (200)
Q Consensus 83 ~~TPgrl~----------~~~~v~d~~~~DEA----------D~ll~-~~f~~~-i~~i~~i~~~l~-----------~~ 129 (200)
++||||+. ..++|+ ||| |+|++ .||.++ + ..+++.+| .+
T Consensus 122 v~Tp~~l~~~l~~~~~~~~~~iVi-----DEaH~~~~~~~~~d~~l~~~~~~~~~~---~~i~~~~~~~~~~~~l~~~~~ 193 (414)
T 3oiy_A 122 VFSTQFVSKNREKLSQKRFDFVFV-----DDVDAVLKASRNIDTLLMMVGIPEEII---RKAFSTIKQGKIYERPKNLKP 193 (414)
T ss_dssp EEEHHHHHHCHHHHTTCCCSEEEE-----SCHHHHHHCHHHHHHHHHHTTCCHHHH---HHHHHHHHHTCCCCCCTTCCC
T ss_pred EECHHHHHHHHHHhccccccEEEE-----eChHhhhhccchhhhHHhhcCCcHHHH---HHHHHhcccchhhhhcccCCC
Confidence 79999994 344555 778 67788 999998 6 88888776 78
Q ss_pred cEE-EEEee-CchhHH-HHHHHhCCCCeEEEec-cccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 130 TKV-SAIAT-FPLTVK-NFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 130 ~Q~-lfSAT-~~~~v~-~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
.|+ ++||| .|..+. .+...++. +.+. ......++.|.|+.+ +|...|..+++. ..+++|||||
T Consensus 194 ~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~l~~-~~~~~lVF~~ 260 (414)
T 3oiy_A 194 GILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---RSKEKLVELLEI-FRDGILIFAQ 260 (414)
T ss_dssp CEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEESS---CCHHHHHHHHHH-HCSSEEEEES
T ss_pred ceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeecc---CHHHHHHHHHHH-cCCCEEEEEC
Confidence 999 99999 676665 33333332 2333 445567889998876 466677777776 3489999997
No 31
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.73 E-value=1.1e-18 Score=169.53 Aligned_cols=174 Identities=10% Similarity=-0.019 Sum_probs=125.1
Q ss_pred hHHhHhhhcCc----------cEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh----cCCcEEEEeCCcccc-
Q psy13288 8 HSILLILKKSD----------FTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK----VNLPLYVESQGTSKF- 72 (200)
Q Consensus 8 ~~i~~~l~~~~----------~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~----~~l~~~~~~gg~~~~- 72 (200)
.+|+.++++.| +|+.+..|..+.. .+++++|||+||||||.|+++.++ .++++..+.||.+..
T Consensus 85 ~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~e 162 (1104)
T 4ddu_A 85 LWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEE 162 (1104)
T ss_dssp HHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTH
T ss_pred HHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHH
Confidence 35666666544 4443344432222 467899999999999999999999 478999999998651
Q ss_pred --c---cC--CCCceeeecccccee----------eeeeeecCCCCChh----------hcccc-ccchhh-hhcHHHHH
Q psy13288 73 --R---SF--GKGDIFNAGSVSRIT----------RHTFAMTPSVGPIV----------DRKFG-QIFNGQ-ILVPKHVL 123 (200)
Q Consensus 73 --~---~~--~~~~~~~~~TPgrl~----------~~~~v~d~~~~DEA----------D~ll~-~~f~~~-i~~i~~i~ 123 (200)
. .+ +..+++ ++||||+. ..++|+ ||| |+|++ .||.++ + ..++
T Consensus 163 r~~~~~~l~~g~~~Il-V~Tp~rL~~~l~~l~~~~l~~lVi-----DEaH~l~~~~r~~Dr~L~~~gf~~~~i---~~il 233 (1104)
T 4ddu_A 163 KEKFEKSFEEDDYHIL-VFSTQFVSKNREKLSQKRFDFVFV-----DDVDAVLKASRNIDTLLMMVGIPEEII---RKAF 233 (1104)
T ss_dssp HHHHHHHHHTSCCSEE-EEEHHHHHHSHHHHHTSCCSEEEE-----SCHHHHTTSSHHHHHHHHTSSCCHHHH---HHHH
T ss_pred HHHHHHHHhCCCCCEE-EECHHHHHHHHHhhcccCcCEEEE-----eCCCccccccccchhhhHhcCCCHHHH---HHHH
Confidence 1 11 224554 79999994 445555 778 78888 999999 6 8889
Q ss_pred hhCC-----------CCcEE-EEEee-CchhHHH-HHHHhCCCCeEEEec-cccccccceEEEEEcccccHHHHHHHHHh
Q psy13288 124 RSLE-----------PKTKV-SAIAT-FPLTVKN-FMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFS 188 (200)
Q Consensus 124 ~~l~-----------~~~Q~-lfSAT-~~~~v~~-~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~ 188 (200)
+.+| ++.|+ +|||| .|..+.. +.+.++. +.+. ......++.|+|+.+ +|...|..+++
T Consensus 234 ~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~---~k~~~L~~ll~ 306 (1104)
T 4ddu_A 234 STIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---RSKEKLVELLE 306 (1104)
T ss_dssp HHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---CCHHHHHHHHH
T ss_pred HhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---CHHHHHHHHHH
Confidence 8887 88999 99999 6776653 3333333 4444 556678899999877 56777788887
Q ss_pred hCCCCeEEEEeC
Q psy13288 189 KCCSLLGVFTCT 200 (200)
Q Consensus 189 ~~~~~k~iIF~n 200 (200)
.. .+++|||||
T Consensus 307 ~~-~~~~LVF~~ 317 (1104)
T 4ddu_A 307 IF-RDGILIFAQ 317 (1104)
T ss_dssp HH-CSSEEEEES
T ss_pred hc-CCCEEEEEC
Confidence 73 489999997
No 32
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.73 E-value=1e-17 Score=140.50 Aligned_cols=167 Identities=15% Similarity=0.158 Sum_probs=126.2
Q ss_pred cCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc---cCCCCceeeecccc
Q psy13288 16 KSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR---SFGKGDIFNAGSVS 87 (200)
Q Consensus 16 ~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~---~~~~~~~~~~~TPg 87 (200)
|+|+|+.+..|..+ .+.++||++|||+|+.|+.+.++ .++++....||.+... .....++. ++||+
T Consensus 41 GsGKT~~~~~~~~~-----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-v~T~~ 114 (337)
T 2z0m_A 41 GSGKTAAYAIPILE-----LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIV-VATPG 114 (337)
T ss_dssp TSSHHHHHHHHHHH-----HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEE-EECHH
T ss_pred CCcHHHHHHHHHHh-----hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEE-EECHH
Confidence 34555545554422 25689999999999999999998 4688888888876411 11234444 79999
Q ss_pred ceee------------eeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCCe
Q psy13288 88 RITR------------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDPY 154 (200)
Q Consensus 88 rl~~------------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~ 154 (200)
++.. .++|+ ||||++.+.+|...+ ..++...+...|+ ++|||++..+.+....++.++.
T Consensus 115 ~l~~~~~~~~~~~~~~~~iVi-----DEah~~~~~~~~~~~---~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~ 186 (337)
T 2z0m_A 115 RLLDLWSKGVIDLSSFEIVII-----DEADLMFEMGFIDDI---KIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYE 186 (337)
T ss_dssp HHHHHHHTTSCCGGGCSEEEE-----ESHHHHHHTTCHHHH---HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCE
T ss_pred HHHHHHHcCCcchhhCcEEEE-----EChHHhhccccHHHH---HHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCce
Confidence 9862 33444 778999999999998 8999999999999 9999999999999999999988
Q ss_pred EEEeccccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 155 EINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 155 ~i~v~~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
.+... ....++.+.++.++...+... ..+.....+++|||||
T Consensus 187 ~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lvf~~ 228 (337)
T 2z0m_A 187 EIEAC--IGLANVEHKFVHVKDDWRSKV--QALRENKDKGVIVFVR 228 (337)
T ss_dssp EEECS--GGGGGEEEEEEECSSSSHHHH--HHHHTCCCSSEEEECS
T ss_pred eeecc--cccCCceEEEEEeChHHHHHH--HHHHhCCCCcEEEEEc
Confidence 77532 445678888888877665432 5566667789999996
No 33
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.73 E-value=2.6e-19 Score=167.85 Aligned_cols=117 Identities=13% Similarity=0.012 Sum_probs=87.3
Q ss_pred hhcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc--CCCCceeeecc
Q psy13288 14 LKKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS--FGKGDIFNAGS 85 (200)
Q Consensus 14 l~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~--~~~~~~~~~~T 85 (200)
-.|+|+|+++.+|.. +. ..+.+++||+||||||.|+++++. .++++.+++||.+.... ....++. +||
T Consensus 104 ~TGeGKTlaf~LP~~l~a---L~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~~~dIv-~gT 179 (844)
T 1tf5_A 104 KTGEGKTLTSTLPVYLNA---LTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADIT-YST 179 (844)
T ss_dssp CTTSCHHHHHHHHHHHHH---TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHHHSSEE-EEE
T ss_pred cCCcHHHHHHHHHHHHHH---HcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhcCCCEE-EEC
Confidence 347899999999984 32 235689999999999999999998 79999999999764110 1123444 799
Q ss_pred ccce-----e--------------eeeeeecCCCCChhhccc-ccc---------------chhhhhcHHHHHhhCC---
Q psy13288 86 VSRI-----T--------------RHTFAMTPSVGPIVDRKF-GQI---------------FNGQILVPKHVLRSLE--- 127 (200)
Q Consensus 86 Pgrl-----~--------------~~~~v~d~~~~DEAD~ll-~~~---------------f~~~i~~i~~i~~~l~--- 127 (200)
|||+ . .+++|+ ||||+|| |++ |..++ ..|++.+|
T Consensus 180 pgrlgfD~L~D~m~~~~~~l~lr~~~~lVl-----DEaD~mLiDea~tplIisg~~~~~~~~~~~i---~~iv~~l~~~~ 251 (844)
T 1tf5_A 180 NNELGFDYLRDNMVLYKEQMVQRPLHFAVI-----DEVDSILIDEARTPLIISGQAAKSTKLYVQA---NAFVRTLKAEK 251 (844)
T ss_dssp HHHHHHHHHHHTTCSSGGGCCCCCCCEEEE-----ETHHHHHTTTTTCEEEEEEEEECCCHHHHHH---HHHHTTCCSSS
T ss_pred chhhhHHHHHHhhhcchhhhcccCCCEEEE-----CchhhhhhhccccchhhcCCcccchhHHHHH---HHHHHhCcccc
Confidence 9999 2 123344 7889998 764 55666 99999997
Q ss_pred ------CCcEE------------------EEEeeCchhH
Q psy13288 128 ------PKTKV------------------SAIATFPLTV 142 (200)
Q Consensus 128 ------~~~Q~------------------lfSAT~~~~v 142 (200)
+++|+ |||||++..+
T Consensus 252 ~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~ 290 (844)
T 1tf5_A 252 DYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALN 290 (844)
T ss_dssp SBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHH
T ss_pred cceeccccceEEecHHHHHHHHHHhCccccCCCccchhH
Confidence 46777 6899987433
No 34
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.72 E-value=1.2e-18 Score=163.11 Aligned_cols=102 Identities=12% Similarity=0.081 Sum_probs=65.3
Q ss_pred hcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc--cCCCCceeeeccc
Q psy13288 15 KKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR--SFGKGDIFNAGSV 86 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~--~~~~~~~~~~~TP 86 (200)
.|+|+|+++.+|.. +. ..+.+|+|++||||||.|+++++. .++++.+++||.+... .....++. +|||
T Consensus 96 TGsGKTlaf~LP~l~~~---l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~~~dIv-vgTp 171 (853)
T 2fsf_A 96 TGEGKTLTATLPAYLNA---LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADIT-YGTN 171 (853)
T ss_dssp TTSCHHHHHHHHHHHHH---TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHHHSSEE-EEEH
T ss_pred CCchHHHHHHHHHHHHH---HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhcCCCEE-EECC
Confidence 37899999999984 32 235789999999999999999998 7999999999976411 01123444 7999
Q ss_pred ccee-------------------eeeeeecCCCCChhhccc-ccc---------------chhhhhcHHHHHhhCCC
Q psy13288 87 SRIT-------------------RHTFAMTPSVGPIVDRKF-GQI---------------FNGQILVPKHVLRSLEP 128 (200)
Q Consensus 87 grl~-------------------~~~~v~d~~~~DEAD~ll-~~~---------------f~~~i~~i~~i~~~l~~ 128 (200)
||+. .+++|+ ||||+|| |.+ |..++ ..|++.+|+
T Consensus 172 grl~fDyLrd~~~~~~~~~~~~~l~~lVl-----DEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i---~~iv~~L~~ 240 (853)
T 2fsf_A 172 NEYGFDYLRDNMAFSPEERVQRKLHYALV-----DEVDSILIDEARTPLIISGPAEDSSEMYKRV---NKIIPHLIR 240 (853)
T ss_dssp HHHHHHHHHHTTCSSGGGCCCCSCCEEEE-----SCHHHHTTTTTTCEEEEEEC-----------------------
T ss_pred chhhHHHHHhhhhccHhHhcccCCcEEEE-----CchHHHHHhcCcccccccCCCccchhHHHHH---HHHHHhchh
Confidence 9982 123333 7889999 544 55666 888888874
No 35
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.68 E-value=1.5e-18 Score=167.93 Aligned_cols=168 Identities=10% Similarity=0.071 Sum_probs=120.4
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCC----cEEEEeCCccccc------cCCCCc
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNL----PLYVESQGTSKFR------SFGKGD 79 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l----~~~~~~gg~~~~~------~~~~~~ 79 (200)
.|+|+|+ +..|..... ..+++++||++||||||.|+++.++ .++ ++..+.||.+... .+...+
T Consensus 80 TGSGKTl-~~lp~l~~~-~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~ 157 (1054)
T 1gku_B 80 TGVGKTS-FGLAMSLFL-ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFK 157 (1054)
T ss_dssp BTSCSHH-HHHHHHHHH-HTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCS
T ss_pred CCCCHHH-HHHHHHHHH-hhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccCCC
Confidence 3466665 666663221 1357899999999999999999998 466 8899999987522 122234
Q ss_pred eeeeccccceee--------eeeeecCCCCChhhccccccchhhhhcHHHHHhhC-----------CCCcEE-EEEeeCc
Q psy13288 80 IFNAGSVSRITR--------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSL-----------EPKTKV-SAIATFP 139 (200)
Q Consensus 80 ~~~~~TPgrl~~--------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l-----------~~~~Q~-lfSAT~~ 139 (200)
++ ++||||+.. .++|+ ||||+|++ |..++ ..+++.+ +...|+ +||||++
T Consensus 158 Il-V~TP~~L~~~l~~L~~l~~lVi-----DEah~~l~--~~~~~---~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t 226 (1054)
T 1gku_B 158 IV-ITTTQFLSKHYRELGHFDFIFV-----DDVDAILK--ASKNV---DKLLHLLGFHYDLKTKSWVGEARGCLMVSTAT 226 (1054)
T ss_dssp EE-EEEHHHHHHCSTTSCCCSEEEE-----SCHHHHHT--STHHH---HHHHHHTTEEEETTTTEEEECCSSEEEECCCC
T ss_pred EE-EEcHHHHHHHHHHhccCCEEEE-----eChhhhhh--ccccH---HHHHHHhCcchhhhhhhcccCCceEEEEecCC
Confidence 44 799999983 24444 78899998 45555 5555544 467889 9999999
Q ss_pred hhHHHHHHHhCCCCeEEEec-cccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 140 LTVKNFMEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 140 ~~v~~~~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
.. ..++..+++++..+.+. ......++.|+++ +.+|...|..+++.. .+++|||||
T Consensus 227 ~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~ 283 (1054)
T 1gku_B 227 AK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESISTLSSILEKL-GTGGIIYAR 283 (1054)
T ss_dssp SC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEES
T ss_pred Cc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEc
Confidence 88 76666666666666555 5556678888887 467888888888875 578999997
No 36
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.65 E-value=3.2e-17 Score=154.11 Aligned_cols=115 Identities=15% Similarity=0.061 Sum_probs=86.9
Q ss_pred hcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc--cCCCCceeeeccc
Q psy13288 15 KKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR--SFGKGDIFNAGSV 86 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~--~~~~~~~~~~~TP 86 (200)
.|+|+|+++.+|.. +.. .+.+++|++||||||.|+++++. .++++.+++||.+... .....++. +|||
T Consensus 133 TGeGKTLa~~LP~~l~aL---~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y~~DIv-ygTp 208 (922)
T 1nkt_A 133 TGEGKTLTCVLPAYLNAL---AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAYNADIT-YGTN 208 (922)
T ss_dssp TTSCHHHHTHHHHHHHHT---TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHHHSSEE-EEEH
T ss_pred CCCccHHHHHHHHHHHHH---hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhcCCCEE-EECc
Confidence 47899999999983 332 24589999999999999999998 7999999999976411 01123444 7999
Q ss_pred ccee-------------------eeeeeecCCCCChhhccc-cc---------------cchhhhhcHHHHHhhCC----
Q psy13288 87 SRIT-------------------RHTFAMTPSVGPIVDRKF-GQ---------------IFNGQILVPKHVLRSLE---- 127 (200)
Q Consensus 87 grl~-------------------~~~~v~d~~~~DEAD~ll-~~---------------~f~~~i~~i~~i~~~l~---- 127 (200)
||+- .++.|+ ||||+|| |. +|..++ ..|++.+|
T Consensus 209 grlgfDyLrD~m~~~~~~l~lr~l~~lIV-----DEaDsmLiDeartPLiiSg~~~~~~~~y~~i---~~iv~~L~~~~d 280 (922)
T 1nkt_A 209 NEFGFDYLRDNMAHSLDDLVQRGHHYAIV-----DEVDSILIDEARTPLIISGPADGASNWYTEF---ARLAPLMEKDVH 280 (922)
T ss_dssp HHHHHHHHHHTTCSSGGGCCCCCCCEEEE-----TTHHHHHTTGGGSCEEEEEECCCCHHHHHHH---HHHHHHSCBTTT
T ss_pred hHhhHHHHHhhhhccHhhhccCCCCEEEE-----eChHHHHHhcCccceeecCCCCcchhHHHHH---HHHHHhCccccc
Confidence 9982 233333 7889999 43 577777 99999998
Q ss_pred -----CCcEE------------------EEEeeCchh
Q psy13288 128 -----PKTKV------------------SAIATFPLT 141 (200)
Q Consensus 128 -----~~~Q~------------------lfSAT~~~~ 141 (200)
+++|+ |||||++.-
T Consensus 281 y~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l 317 (922)
T 1nkt_A 281 YEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPL 317 (922)
T ss_dssp EEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCH
T ss_pred ceeccCcceEEecHhHHHHHHHHhCCccccCCcchhH
Confidence 67888 589998753
No 37
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.63 E-value=7.1e-16 Score=149.80 Aligned_cols=130 Identities=9% Similarity=-0.063 Sum_probs=98.7
Q ss_pred cCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccccccCCCCceeeecccccee----
Q psy13288 16 KSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSKFRSFGKGDIFNAGSVSRIT---- 90 (200)
Q Consensus 16 ~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~---- 90 (200)
|+|+|+.+..|..+.- .++.+++|++|||+||.|+++.+. ..-.+.++.|+.+... ..+++ ++|||++.
T Consensus 209 GSGKTlva~l~i~~~l--~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~~~---~~~Il-V~Tpe~L~~~L~ 282 (1108)
T 3l9o_A 209 SAGKTVVAEYAIAQSL--KNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINP---DAGCL-VMTTEILRSMLY 282 (1108)
T ss_dssp SSHHHHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBCCC---SCSEE-EEEHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHH--hcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccccCC---CCCEE-EeChHHHHHHHH
Confidence 3555555555553321 246799999999999999999999 3337888888887621 23444 79999887
Q ss_pred --------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCch--hHHHHHHHhCCCCeEEEec
Q psy13288 91 --------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPL--TVKNFMEKHLKDPYEINLM 159 (200)
Q Consensus 91 --------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~--~v~~~~~~~l~~~~~i~v~ 159 (200)
..++|+ ||||+|.+.+|...+ ..++..++++.|+ ++|||+|. ++..+...+..+|..+...
T Consensus 283 ~~~~~l~~l~lVVI-----DEaH~l~d~~rg~~~---e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~ 354 (1108)
T 3l9o_A 283 RGSEVMREVAWVIF-----DEVHYMRDKERGVVW---EETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYT 354 (1108)
T ss_dssp HCSSHHHHEEEEEE-----ETGGGTTSHHHHHHH---HHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEE
T ss_pred cCccccccCCEEEE-----hhhhhccccchHHHH---HHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEec
Confidence 455666 667999999999998 9999999999999 99999976 4557777888888776543
No 38
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.57 E-value=1.4e-14 Score=132.69 Aligned_cols=172 Identities=10% Similarity=-0.038 Sum_probs=115.4
Q ss_pred CccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccccc----------cCCCCceeeecc
Q psy13288 17 SDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSKFR----------SFGKGDIFNAGS 85 (200)
Q Consensus 17 ~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~~~----------~~~~~~~~~~~T 85 (200)
+|+|+.|..|... ...++||++||+||+.|..+.++ .++++..+.||.+... ..+..+++ ++|
T Consensus 70 sGKTl~~~lpal~-----~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Il-v~T 143 (591)
T 2v1x_A 70 GGKSLCYQLPALC-----SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLI-YVT 143 (591)
T ss_dssp SCTTHHHHHHHHT-----SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEE-EEC
T ss_pred ChHHHHHHHHHHH-----cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEE-EEC
Confidence 4444445555532 23489999999999999999998 8899888888865310 11233443 699
Q ss_pred cccee-----------------eeeeeecCCCCChhhcccccc--chhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHH
Q psy13288 86 VSRIT-----------------RHTFAMTPSVGPIVDRKFGQI--FNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNF 145 (200)
Q Consensus 86 Pgrl~-----------------~~~~v~d~~~~DEAD~ll~~~--f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~ 145 (200)
|+|+. ..++|+ ||||++.+.| |.+++..+..+.+..| +.|+ ++|||.+..+.+.
T Consensus 144 pe~L~~~~~~~~~l~~~~~~~~i~~iVi-----DEAH~is~~g~dfr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~v~~~ 217 (591)
T 2v1x_A 144 PEKIAKSKMFMSRLEKAYEARRFTRIAV-----DEVHCCSQWGHDFRPDYKALGILKRQFP-NASLIGLTATATNHVLTD 217 (591)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTCEEEEEE-----ETGGGGSTTCTTCCGGGGGGGHHHHHCT-TSEEEEEESSCCHHHHHH
T ss_pred hhHhhccHHHHHHHHhhhhccCCcEEEE-----ECcccccccccccHHHHHHHHHHHHhCC-CCcEEEEecCCCHHHHHH
Confidence 99873 344555 6779999876 8888754445555554 7899 9999999999998
Q ss_pred HHHhCCCCeEEEeccccccccceEEEEEccc--ccHHHHHHHHHhhC-CCCeEEEEeC
Q psy13288 146 MEKHLKDPYEINLMEELTLKGVTQYYAFVQE--RQKVHCLNTLFSKC-CSLLGVFTCT 200 (200)
Q Consensus 146 ~~~~l~~~~~i~v~~~~~~~~i~q~~i~~~~--~~K~~~L~~ll~~~-~~~k~iIF~n 200 (200)
+..++..+..+.+......+++...+...+. .++...|..+++.. ..+++||||+
T Consensus 218 i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~ 275 (591)
T 2v1x_A 218 AQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCF 275 (591)
T ss_dssp HHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECS
T ss_pred HHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeC
Confidence 8888875544333323333444333332222 34667777777643 5679999996
No 39
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.49 E-value=9.5e-14 Score=133.88 Aligned_cols=142 Identities=9% Similarity=-0.043 Sum_probs=98.1
Q ss_pred cCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh--cCCcEEEEeCCccccccCCCCceeeecccccee---
Q psy13288 16 KSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK--VNLPLYVESQGTSKFRSFGKGDIFNAGSVSRIT--- 90 (200)
Q Consensus 16 ~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~--~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~--- 90 (200)
|+|+|+.+..|..+.- .++.++|+++|||+||.|+++.++ .+ ++..+.|+.+... ..+++ ++||+++.
T Consensus 111 GSGKTlva~lai~~~l--~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-~vglltGd~~~~~---~~~Iv-V~Tpe~L~~~L 183 (1010)
T 2xgj_A 111 SAGKTVVAEYAIAQSL--KNKQRVIYTSPIKALSNQKYRELLAEFG-DVGLMTGDITINP---DAGCL-VMTTEILRSML 183 (1010)
T ss_dssp TSCHHHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHHHHHHHHS-CEEEECSSCEECT---TCSEE-EEEHHHHHHHH
T ss_pred CCChHHHHHHHHHHHh--ccCCeEEEECChHHHHHHHHHHHHHHhC-CEEEEeCCCccCC---CCCEE-EEcHHHHHHHH
Confidence 4555555544443221 245799999999999999999998 34 7888888887621 23443 79999885
Q ss_pred ---------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchh--HHHHHHHhCCCCeEEEe
Q psy13288 91 ---------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLT--VKNFMEKHLKDPYEINL 158 (200)
Q Consensus 91 ---------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~--v~~~~~~~l~~~~~i~v 158 (200)
..++|+ ||||+|.+.++...+ ..++..+|++.|+ ++|||++.. +.+.......++..+..
T Consensus 184 ~~~~~~l~~l~lVVi-----DEaH~l~d~~rg~~~---e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~ 255 (1010)
T 2xgj_A 184 YRGSEVMREVAWVIF-----DEVHYMRDKERGVVW---EETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVY 255 (1010)
T ss_dssp HHTCTTGGGEEEEEE-----ETGGGGGCTTTHHHH---HHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEE
T ss_pred HcCcchhhcCCEEEE-----echhhhcccchhHHH---HHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEe
Confidence 345556 677999999888887 8889999999999 999999754 23444444566766654
Q ss_pred ccccccccceEEEEE
Q psy13288 159 MEELTLKGVTQYYAF 173 (200)
Q Consensus 159 ~~~~~~~~i~q~~i~ 173 (200)
.... +..++++++.
T Consensus 256 ~~~r-p~pl~~~~~~ 269 (1010)
T 2xgj_A 256 TNFR-PTPLQHYLFP 269 (1010)
T ss_dssp ECCC-SSCEEEEEEE
T ss_pred cCCC-cccceEEEEe
Confidence 3221 2235665553
No 40
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.49 E-value=1.3e-13 Score=132.84 Aligned_cols=95 Identities=11% Similarity=-0.072 Sum_probs=77.5
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh---cCCcEEEEeCCccccccCCCCceeeecccccee------------eeeeeecCC
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK---VNLPLYVESQGTSKFRSFGKGDIFNAGSVSRIT------------RHTFAMTPS 99 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~---~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~------------~~~~v~d~~ 99 (200)
++.++||++|||+|+.|+++.++ .++++..+.|+.+... ..+++ ++|||++. ..++|+
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~~~---~~~Il-V~Tpe~L~~~l~~~~~~l~~l~lvVi--- 153 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINP---DANCL-IMTTEILRSMLYRGADLIRDVEFVIF--- 153 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCEECT---TSSEE-EEEHHHHHHHHHHTCSGGGGEEEEEE---
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCccCC---CCCEE-EECHHHHHHHHHhCchhhcCCCEEEE---
Confidence 46799999999999999999998 4789999999887621 23343 79999986 344555
Q ss_pred CCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchh
Q psy13288 100 VGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLT 141 (200)
Q Consensus 100 ~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~ 141 (200)
||||++.+.+|...+ ..++..+|++.|+ ++|||++..
T Consensus 154 --DEaH~l~d~~~g~~~---e~ii~~l~~~v~iIlLSAT~~n~ 191 (997)
T 4a4z_A 154 --DEVHYVNDQDRGVVW---EEVIIMLPQHVKFILLSATVPNT 191 (997)
T ss_dssp --CCTTCCCTTCTTCCH---HHHHHHSCTTCEEEEEECCCTTH
T ss_pred --ECcccccccchHHHH---HHHHHhcccCCCEEEEcCCCCCh
Confidence 677999999999988 9999999999999 999999744
No 41
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.45 E-value=4e-14 Score=130.85 Aligned_cols=93 Identities=11% Similarity=-0.001 Sum_probs=72.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh--cCCcEEEEeCCccccccCCCCceeeecccccee---------eeeeeecCCCCChh
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK--VNLPLYVESQGTSKFRSFGKGDIFNAGSVSRIT---------RHTFAMTPSVGPIV 104 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~--~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~---------~~~~v~d~~~~DEA 104 (200)
+.+++|++||||||.|+++.+. .+.++...+|+.... +..++. ++||||++ .+++|+ |||
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~~~---~~~~Il-V~TPGrLl~~~~l~l~~l~~lVl-----DEA 327 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTIT---TGAPVT-YSTYGKFLADGGCSGGAYDIIIC-----DEC 327 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEEC---CCCSEE-EEEHHHHHHTTSCCTTSCSEEEE-----TTT
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEecc---CCCCEE-EECcHHHHhCCCcccCcccEEEE-----ccc
Confidence 5699999999999999998776 677778888887641 133443 79999986 233444 788
Q ss_pred hccccccchhhhhcHHHHHhhCCCCcE--E-EEEeeCchh
Q psy13288 105 DRKFGQIFNGQILVPKHVLRSLEPKTK--V-SAIATFPLT 141 (200)
Q Consensus 105 D~ll~~~f~~~i~~i~~i~~~l~~~~Q--~-lfSAT~~~~ 141 (200)
++++.+|..++ ..+++.++..+| + ++|||++..
T Consensus 328 -H~l~~~~~~~l---~~Il~~l~~~~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 328 -HSTDSTTILGI---GTVLDQAETAGARLVVLATATPPGS 363 (666)
T ss_dssp -TCCSHHHHHHH---HHHHHHTTTTTCSEEEEEESSCTTC
T ss_pred -hhcCccHHHHH---HHHHHhhhhcCCceEEEECCCCCcc
Confidence 78899999988 889999988777 5 679999874
No 42
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.44 E-value=8.9e-15 Score=134.56 Aligned_cols=123 Identities=13% Similarity=-0.003 Sum_probs=77.3
Q ss_pred cCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhhcCCcEEEEeCCccccccCCCCceeeeccccceeeee-
Q psy13288 16 KSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEKVNLPLYVESQGTSKFRSFGKGDIFNAGSVSRITRHT- 93 (200)
Q Consensus 16 ~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~~~~- 93 (200)
|+++|+++..|.. ++.. +++++||++||||||.|+++.++ +..+. +.+.. ...++||||+...+
T Consensus 196 GSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi~~~l~-~~~v~--~~~~~---------l~~~~tp~~~i~~~t 261 (618)
T 2whx_A 196 GAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEMEEALR-GLPIR--YQTPA---------VKSDHTGREIVDLMC 261 (618)
T ss_dssp TSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT-TSCEE--ECCTT---------SSCCCCSSSCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHHHHHhc-CCcee--Eeccc---------ceeccCCCceEEEEC
Confidence 4555666666653 2222 46899999999999999999987 22222 11111 11258888876211
Q ss_pred --------------eeecCCCCChhhccccccchhhhhcHHHHHhhCC-CCcEE-EEEeeCchhHHHHHHHhCCCCeEEE
Q psy13288 94 --------------FAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLE-PKTKV-SAIATFPLTVKNFMEKHLKDPYEIN 157 (200)
Q Consensus 94 --------------~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~-~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~ 157 (200)
.-++-.+.||||+| +.+|...+ ..+.+.++ +++|+ +||||++..+..++. .++..+.
T Consensus 262 ~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~---~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~ 334 (618)
T 2whx_A 262 HATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAAR---GYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIED 334 (618)
T ss_dssp HHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHH---HHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEE
T ss_pred hHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHH---HHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceee
Confidence 00111222778998 88888887 77777665 67999 999999887654332 3555554
Q ss_pred ec
Q psy13288 158 LM 159 (200)
Q Consensus 158 v~ 159 (200)
+.
T Consensus 335 v~ 336 (618)
T 2whx_A 335 IE 336 (618)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 43
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.43 E-value=2.9e-13 Score=122.08 Aligned_cols=153 Identities=10% Similarity=0.031 Sum_probs=107.4
Q ss_pred eeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccccc------c--CCCCceeeecccccee------------eeeee
Q psy13288 37 LRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSKFR------S--FGKGDIFNAGSVSRIT------------RHTFA 95 (200)
Q Consensus 37 ~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~~~------~--~~~~~~~~~~TPgrl~------------~~~~v 95 (200)
..+||++||++|+.|..+.++ .++++..+.|+.+... . .+..++. ++||+|+. ..++|
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~il-v~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLL-YIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEE-EECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEE-EECHHHHhChHHHHHHhhCCCCEEE
Confidence 468999999999999999998 7888888877754310 0 1123333 69999986 33455
Q ss_pred ecCCCCChhhcccccc--chhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHh--CCCCeEEEeccccccccceEE
Q psy13288 96 MTPSVGPIVDRKFGQI--FNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKH--LKDPYEINLMEELTLKGVTQY 170 (200)
Q Consensus 96 ~d~~~~DEAD~ll~~~--f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~--l~~~~~i~v~~~~~~~~i~q~ 170 (200)
+ ||||++.+.| |..++..+..+.+.+| +.|+ ++|||.+..+..-.... +.+|..+... ...+++ +
T Consensus 145 i-----DEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--~~r~~l--~ 214 (523)
T 1oyw_A 145 V-----DEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISS--FDRPNI--R 214 (523)
T ss_dssp E-----SSGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC--CCCTTE--E
T ss_pred E-----eCccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC--CCCCce--E
Confidence 5 6779998765 7777655566677776 5788 99999998887644433 3566554322 112333 3
Q ss_pred EEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 171 YAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 171 ~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
|...+..+|...|..+++....+++|||||
T Consensus 215 ~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~ 244 (523)
T 1oyw_A 215 YMLMEKFKPLDQLMRYVQEQRGKSGIIYCN 244 (523)
T ss_dssp EEEEECSSHHHHHHHHHHHTTTCCEEEECS
T ss_pred EEEEeCCCHHHHHHHHHHhcCCCcEEEEeC
Confidence 444566788999999998877789999996
No 44
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.42 E-value=3e-13 Score=120.71 Aligned_cols=117 Identities=10% Similarity=-0.048 Sum_probs=75.2
Q ss_pred hcCccEEEecCccccc-cc--CCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc----CCCCceee
Q psy13288 15 KKSDFTLKISCPRSQL-TV--QELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS----FGKGDIFN 82 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~-~~--~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~----~~~~~~~~ 82 (200)
.|+|+|+.+..|..+. .. ...+.++||++|||||+.|+.+.++ .++++..+.||.+.... ....+++
T Consensus 31 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~- 109 (556)
T 4a2p_A 31 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDII- 109 (556)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEE-
T ss_pred CCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEE-
Confidence 3456666666666332 22 2227899999999999999999998 38999999999865211 1123444
Q ss_pred eccccceee-------------eeeeecCCCCChhhccccccchhhhhcHHHHHhh----CCCCcEE-EEEeeCc
Q psy13288 83 AGSVSRITR-------------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRS----LEPKTKV-SAIATFP 139 (200)
Q Consensus 83 ~~TPgrl~~-------------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~----l~~~~Q~-lfSAT~~ 139 (200)
++|||++.. .++|+ ||||++.+.++...+ +...+.. .++..|+ ++|||.+
T Consensus 110 v~T~~~l~~~~~~~~~~~~~~~~~vVi-----DEah~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 110 VVTPQILVNSFEDGTLTSLSIFTLMIF-----DECHNTTGNHPYNVL--MTRYLEQKFNSASQLPQILGLTASVG 177 (556)
T ss_dssp EECHHHHHHHHHSSSCCCSTTCSEEEE-----ETGGGCSTTSHHHHH--HHHHHHHHHCC---CCEEEEEESCCC
T ss_pred EECHHHHHHHHHhCcccccccCCEEEE-----ECCcccCCcchHHHH--HHHHHHhhhcccCCCCeEEEEeCCcc
Confidence 799999872 23344 788999988765443 2333322 1356889 9999984
No 45
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.40 E-value=7.7e-13 Score=117.70 Aligned_cols=117 Identities=13% Similarity=-0.034 Sum_probs=78.8
Q ss_pred hcCccEEEecCccccc-cc--CCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc----CCCCceee
Q psy13288 15 KKSDFTLKISCPRSQL-TV--QELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS----FGKGDIFN 82 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~-~~--~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~----~~~~~~~~ 82 (200)
.|+|+|+.+..|..+. .. ...+.++||++|||||+.|+.+.++ .++++..+.||.+.... .+..+++
T Consensus 28 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~- 106 (555)
T 3tbk_A 28 TGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDII- 106 (555)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEE-
T ss_pred CCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEE-
Confidence 4566666667776332 22 1237899999999999999999998 38999999999865211 1123443
Q ss_pred eccccceee-------------eeeeecCCCCChhhccccccchhhhhcHHHHHhhC-----CCCcEE-EEEeeCc
Q psy13288 83 AGSVSRITR-------------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSL-----EPKTKV-SAIATFP 139 (200)
Q Consensus 83 ~~TPgrl~~-------------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l-----~~~~Q~-lfSAT~~ 139 (200)
++|||++.. .++|+ ||||++.+.+....+ +...+... .+..|+ ++|||.+
T Consensus 107 v~T~~~l~~~~~~~~~~~~~~~~~vVi-----DEah~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~lSAT~~ 175 (555)
T 3tbk_A 107 ILTPQILVNNLNNGAIPSLSVFTLMIF-----DECHNTSKNHPYNQI--MFRYLDHKLGESRDPLPQVVGLTASVG 175 (555)
T ss_dssp EECHHHHHHHHHTSSSCCGGGCSEEEE-----TTGGGCSTTCHHHHH--HHHHHHHHTSSCCSCCCEEEEEESCCC
T ss_pred EECHHHHHHHHhcCcccccccCCEEEE-----ECccccCCcchHHHH--HHHHHHhhhccccCCCCeEEEEecCcc
Confidence 799999872 23344 788999987643333 23433332 245789 9999984
No 46
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.37 E-value=3.4e-13 Score=109.28 Aligned_cols=108 Identities=11% Similarity=0.072 Sum_probs=72.1
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEEeCCccccccCCCCceeeecccccee---------eeeeeecCC
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK------VNLPLYVESQGTSKFRSFGKGDIFNAGSVSRIT---------RHTFAMTPS 99 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~---------~~~~v~d~~ 99 (200)
..+++++++||||||.|+.+.+. .+..+.......... .....++. ++||||+. .+++|+
T Consensus 108 ~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~Iv-v~Tpg~l~~~l~~~l~~~~~lVl--- 182 (235)
T 3llm_A 108 AECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESIL-PRPHASIM-FCTVGVLLRKLEAGIRGISHVIV--- 182 (235)
T ss_dssp GGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEEC-CCSSSEEE-EEEHHHHHHHHHHCCTTCCEEEE---
T ss_pred CceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhcc-CCCCCeEE-EECHHHHHHHHHhhhcCCcEEEE---
Confidence 36799999999999999988876 233333333222220 00123343 79999987 355566
Q ss_pred CCChhhcc-ccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCCe
Q psy13288 100 VGPIVDRK-FGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDPY 154 (200)
Q Consensus 100 ~~DEAD~l-l~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~ 154 (200)
||||++ ++.+|.... ++.+....+ +.|+ +||||++.+. +++.+.++|+
T Consensus 183 --DEah~~~~~~~~~~~~--l~~i~~~~~-~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 183 --DEIHERDINTDFLLVV--LRDVVQAYP-EVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp --CCTTSCCHHHHHHHHH--HHHHHHHCT-TSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred --ECCccCCcchHHHHHH--HHHHHhhCC-CCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 667997 888888433 377777664 7899 9999999876 5555555554
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.37 E-value=4.3e-14 Score=124.90 Aligned_cols=117 Identities=14% Similarity=-0.028 Sum_probs=73.7
Q ss_pred hHhhhcCccEEEecCcccc-cccCCCCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccccccCCCCceeeeccccc
Q psy13288 11 LLILKKSDFTLKISCPRSQ-LTVQELSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSKFRSFGKGDIFNAGSVSR 88 (200)
Q Consensus 11 ~~~l~~~~~~l~~~~p~~~-~~~~~~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgr 88 (200)
..+=.|+++|+.+..|..+ +.. ++++++|++||||||.|+++.++ .++. +++. ....++|||+
T Consensus 13 v~a~TGSGKT~~~l~~~l~~~~~--~~~~~lil~Ptr~La~Q~~~~l~~~~v~----~~~~---------~~~~v~Tp~~ 77 (440)
T 1yks_A 13 LDFHPGAGKTRRFLPQILAECAR--RRLRTLVLAPTRVVLSEMKEAFHGLDVK----FHTQ---------AFSAHGSGRE 77 (440)
T ss_dssp ECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTTSCEE----EESS---------CCCCCCCSSC
T ss_pred EEcCCCCCHHHHHHHHHHHHHHh--cCCeEEEEcchHHHHHHHHHHHhcCCeE----Eecc---------cceeccCCcc
Confidence 3344678999988887743 322 46899999999999999999998 3322 1111 1113699999
Q ss_pred eeeeee---------------eecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHH
Q psy13288 89 ITRHTF---------------AMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNF 145 (200)
Q Consensus 89 l~~~~~---------------v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~ 145 (200)
+...+. -++-.+.||||++ +.+|...+..+..+.. +.+.|+ ++|||++..+..+
T Consensus 78 l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~--~~~~~~l~~SAT~~~~~~~~ 147 (440)
T 1yks_A 78 VIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR--ANESATILMTATPPGTSDEF 147 (440)
T ss_dssp CEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH--TTSCEEEEECSSCTTCCCSS
T ss_pred ceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc--cCCceEEEEeCCCCchhhhh
Confidence 872211 1111223888999 5555544422222222 467999 9999998776543
No 48
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.34 E-value=1.3e-12 Score=121.35 Aligned_cols=152 Identities=11% Similarity=0.016 Sum_probs=98.2
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh----cCCcEEEEeCCcccccc-CCCCceeeecccccee------------eeeeeecC
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK----VNLPLYVESQGTSKFRS-FGKGDIFNAGSVSRIT------------RHTFAMTP 98 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~----~~l~~~~~~gg~~~~~~-~~~~~~~~~~TPgrl~------------~~~~v~d~ 98 (200)
+.++++++|||+||.|+.+.++ .++++....|+...... .+..+++ ++|||++. ..++|+
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Ii-v~Tpe~l~~~l~~~~~~l~~~~~vIi-- 144 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDII-VTTSEKADSLIRNRASWIKAVSCLVV-- 144 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSSCSTTCSEE-EEEHHHHHHHHHTTCSGGGGCCEEEE--
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchhhccCCCEE-EECHHHHHHHHHcChhHHhhcCEEEE--
Confidence 5689999999999999999986 57899999998765332 3344554 79999886 234455
Q ss_pred CCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCCeEEEeccccccccceEEEE-----
Q psy13288 99 SVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYA----- 172 (200)
Q Consensus 99 ~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~q~~i----- 172 (200)
||||.+.+.++...++.+-..+++.+++.|+ ++|||++. ..++++ ++..+. +..... +..+.+++.
T Consensus 145 ---DE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r--~~~l~~~~~~~~~~ 216 (702)
T 2p6r_A 145 ---DEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDWR--PVPLVEGVLCEGTL 216 (702)
T ss_dssp ---TTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCCC--SSCEEEEEECSSEE
T ss_pred ---eeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCCC--CccceEEEeeCCee
Confidence 7789999888887773333333444678999 99999984 555554 454322 222110 111222211
Q ss_pred -Ecccc-------cHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 173 -FVQER-------QKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 173 -~~~~~-------~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
+.+.. ++...+...++ ..+++|||||
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~ 250 (702)
T 2p6r_A 217 ELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFES 250 (702)
T ss_dssp EEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECS
T ss_pred eccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcC
Confidence 11211 16666666665 4689999996
No 49
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.33 E-value=2.6e-12 Score=120.89 Aligned_cols=117 Identities=10% Similarity=-0.048 Sum_probs=76.0
Q ss_pred hcCccEEEecCccccc-cc--CCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc----CCCCceee
Q psy13288 15 KKSDFTLKISCPRSQL-TV--QELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS----FGKGDIFN 82 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~-~~--~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~----~~~~~~~~ 82 (200)
.|+|+|+.+..|..+. .. ...+.++||++||++|+.|+.+.++ .++++..+.||.+.... .+..+++
T Consensus 272 TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iv- 350 (797)
T 4a2q_A 272 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDII- 350 (797)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEE-
T ss_pred CCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEE-
Confidence 3455666666666332 22 1227899999999999999999998 38999999999865211 1123444
Q ss_pred eccccceee-------------eeeeecCCCCChhhccccccchhhhhcHHHHHhh----CCCCcEE-EEEeeCc
Q psy13288 83 AGSVSRITR-------------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRS----LEPKTKV-SAIATFP 139 (200)
Q Consensus 83 ~~TPgrl~~-------------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~----l~~~~Q~-lfSAT~~ 139 (200)
++|||++.. .++|+ ||||++.+.+....+ +...+.. ..+..|+ ++|||.+
T Consensus 351 v~Tp~~l~~~l~~~~~~~~~~~~~iVi-----DEaH~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 351 VVTPQILVNSFEDGTLTSLSIFTLMIF-----DECHNTTGNHPYNVL--MTRYLEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp EECHHHHHHHHHSSSCCCGGGCSEEEE-----TTGGGCSTTSHHHHH--HHHHHHHHHTTCCCCCEEEEEESCCC
T ss_pred EEchHHHHHHHHhccccccccCCEEEE-----ECccccCCCccHHHH--HHHHHHHhhccCCCCCeEEEEcCCcc
Confidence 799999872 33444 788999987644443 2333332 1456889 9999985
No 50
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.32 E-value=3.2e-12 Score=118.70 Aligned_cols=123 Identities=11% Similarity=0.007 Sum_probs=86.1
Q ss_pred hhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh----cCCcEEEEeCCcccccc-CCCCceeeeccccc
Q psy13288 14 LKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK----VNLPLYVESQGTSKFRS-FGKGDIFNAGSVSR 88 (200)
Q Consensus 14 l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~----~~l~~~~~~gg~~~~~~-~~~~~~~~~~TPgr 88 (200)
=.|+|+|+.+..|..+.-. .++.++++++|||+||.|+.+.++ .++++....|+...... .+..+++ ++|||+
T Consensus 54 pTGsGKT~~~~l~il~~~~-~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Ii-v~Tpe~ 131 (715)
T 2va8_A 54 PTGSGKTLIAEMGIISFLL-KNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKNYDII-ITTYEK 131 (715)
T ss_dssp CTTSCHHHHHHHHHHHHHH-HSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGGGGGCSEE-EECHHH
T ss_pred CCCCcHHHHHHHHHHHHHH-HCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhhcCCCCEE-EEcHHH
Confidence 3456666655555522111 135699999999999999999986 58899988888765321 2234444 799998
Q ss_pred ee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHH
Q psy13288 89 IT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEK 148 (200)
Q Consensus 89 l~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~ 148 (200)
+. ..++|+ ||||.+.+.++...+ +.++.+++ +.|+ ++|||++. ..++++-
T Consensus 132 l~~~~~~~~~~l~~~~~vIi-----DE~H~l~~~~~~~~l---~~i~~~~~-~~~ii~lSATl~n-~~~~~~~ 194 (715)
T 2va8_A 132 LDSLWRHRPEWLNEVNYFVL-----DELHYLNDPERGPVV---ESVTIRAK-RRNLLALSATISN-YKQIAKW 194 (715)
T ss_dssp HHHHHHHCCGGGGGEEEEEE-----CSGGGGGCTTTHHHH---HHHHHHHH-TSEEEEEESCCTT-HHHHHHH
T ss_pred HHHHHhCChhHhhccCEEEE-----echhhcCCcccchHH---HHHHHhcc-cCcEEEEcCCCCC-HHHHHHH
Confidence 76 344555 677998887888777 77777776 7899 99999974 3555543
No 51
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.31 E-value=1.1e-12 Score=122.13 Aligned_cols=168 Identities=10% Similarity=-0.002 Sum_probs=108.2
Q ss_pred hcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh----cCCcEEEEeCCcccccc-CCCCceeeeccccc
Q psy13288 15 KKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK----VNLPLYVESQGTSKFRS-FGKGDIFNAGSVSR 88 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~----~~l~~~~~~gg~~~~~~-~~~~~~~~~~TPgr 88 (200)
.|+|+|+.+..|.. .+.. ++.++++++|||+||.|+++.++ .++++....|+...... .+..+++ ++|||+
T Consensus 48 TGsGKT~~~~l~il~~~~~--~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~~Ii-v~Tpe~ 124 (720)
T 2zj8_A 48 TASGKTLIAEIAMVHRILT--QGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDII-IATAEK 124 (720)
T ss_dssp GGGCHHHHHHHHHHHHHHH--HCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGGGGGCSEE-EECHHH
T ss_pred CccHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccccCCCCEE-EECHHH
Confidence 44566655545442 2211 25799999999999999999987 58899999987665221 2234444 799998
Q ss_pred ee------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCCeE
Q psy13288 89 IT------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDPYE 155 (200)
Q Consensus 89 l~------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~ 155 (200)
+. ..++|+ ||||.+.+.++...+ ..++..++++.|+ ++|||++. ..++++ |+..+.
T Consensus 125 l~~~~~~~~~~l~~~~~vIi-----DE~H~l~~~~r~~~~---~~ll~~l~~~~~ii~lSATl~n-~~~~~~-~l~~~~- 193 (720)
T 2zj8_A 125 FDSLLRHGSSWIKDVKILVA-----DEIHLIGSRDRGATL---EVILAHMLGKAQIIGLSATIGN-PEELAE-WLNAEL- 193 (720)
T ss_dssp HHHHHHHTCTTGGGEEEEEE-----ETGGGGGCTTTHHHH---HHHHHHHBTTBEEEEEECCCSC-HHHHHH-HTTEEE-
T ss_pred HHHHHHcChhhhhcCCEEEE-----ECCcccCCCcccHHH---HHHHHHhhcCCeEEEEcCCcCC-HHHHHH-HhCCcc-
Confidence 84 345566 677999988888887 8888887778999 99999974 344444 443221
Q ss_pred EEeccccccccceEEE------EEcc-----cccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 156 INLMEELTLKGVTQYY------AFVQ-----ERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 156 i~v~~~~~~~~i~q~~------i~~~-----~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
+.... .+..+.+++ .+.+ ...+...+...++ ..+++|||||
T Consensus 194 ~~~~~--rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~ 245 (720)
T 2zj8_A 194 IVSDW--RPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVN 245 (720)
T ss_dssp EECCC--CSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECS
T ss_pred cCCCC--CCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEec
Confidence 21110 011122211 1222 2456667777665 3589999996
No 52
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.29 E-value=4.6e-13 Score=123.47 Aligned_cols=117 Identities=13% Similarity=-0.062 Sum_probs=72.8
Q ss_pred hcCccEEEecCcccc-cccC--CCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccccC----CCCceee
Q psy13288 15 KKSDFTLKISCPRSQ-LTVQ--ELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRSF----GKGDIFN 82 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~-~~~~--~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~~----~~~~~~~ 82 (200)
.|+|+|+.+..|..+ +... ....++||++|||+|+.|..++++ .++++..+.||.+..... ...+++
T Consensus 37 TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ii- 115 (696)
T 2ykg_A 37 TGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII- 115 (696)
T ss_dssp TTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEE-
T ss_pred CCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEE-
Confidence 345666656666632 2222 223689999999999999999998 389999999998652111 123443
Q ss_pred eccccceee-------------eeeeecCCCCChhhccccccchhhhhcHHHHHhh-----CCCCcEE-EEEeeCc
Q psy13288 83 AGSVSRITR-------------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRS-----LEPKTKV-SAIATFP 139 (200)
Q Consensus 83 ~~TPgrl~~-------------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~-----l~~~~Q~-lfSAT~~ 139 (200)
++|||++.. .++|+ ||||++.+..-...+ +...+.. .++..|+ ++|||..
T Consensus 116 v~Tp~~L~~~l~~~~~~~l~~~~~vVi-----DEaH~~~~~~~~~~i--~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 116 ILTPQILVNNLKKGTIPSLSIFTLMIF-----DECHNTSKQHPYNMI--MFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp EECHHHHHHHHHTTSSCCGGGCSEEEE-----ETGGGCSTTCHHHHH--HHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred EECHHHHHHHHhcCcccccccccEEEE-----eCCCcccCcccHHHH--HHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 799999862 33444 778998765322221 1222221 2345677 7788875
No 53
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.26 E-value=2.4e-13 Score=120.10 Aligned_cols=162 Identities=10% Similarity=-0.022 Sum_probs=106.9
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-cCCc-EEEEeCCccccccCCCCceeeeccccceee-
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-VNLP-LYVESQGTSKFRSFGKGDIFNAGSVSRITR- 91 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-~~l~-~~~~~gg~~~~~~~~~~~~~~~~TPgrl~~- 91 (200)
.|+|+|+.+..+..+. +.++||++||++|+.|..+.++ .+++ +....||... ..++. ++||+++..
T Consensus 117 TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-----~~~Iv-v~T~~~l~~~ 185 (472)
T 2fwr_A 117 TGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-----LKPLT-VSTYDSAYVN 185 (472)
T ss_dssp TTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-----CCSEE-EEEHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-----cCCEE-EEEcHHHHHH
Confidence 3456666555555332 4689999999999999999999 7888 8887777766 55654 899998762
Q ss_pred --------eeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCc-------------------hhHH
Q psy13288 92 --------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFP-------------------LTVK 143 (200)
Q Consensus 92 --------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~-------------------~~v~ 143 (200)
.++|+ ||||++.+.+|.. +++.++ ..++ ++|||.. ....
T Consensus 186 ~~~~~~~~~liIv-----DEaH~~~~~~~~~-------~~~~~~-~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~ 252 (472)
T 2fwr_A 186 AEKLGNRFMLLIF-----DEVHHLPAESYVQ-------IAQMSI-APFRLGLTATFEREDGRHEILKEVVGGKVFELFPD 252 (472)
T ss_dssp HHHHTTTCSEEEE-----ETGGGTTSTTTHH-------HHHTCC-CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHH
T ss_pred HHHhcCCCCEEEE-----ECCcCCCChHHHH-------HHHhcC-CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHH
Confidence 33444 7789999887654 344454 5678 9999986 2355
Q ss_pred HHHHHhCCCCeEEE--ec---ccc----------------------ccccceEEE---------------------EEcc
Q psy13288 144 NFMEKHLKDPYEIN--LM---EEL----------------------TLKGVTQYY---------------------AFVQ 175 (200)
Q Consensus 144 ~~~~~~l~~~~~i~--v~---~~~----------------------~~~~i~q~~---------------------i~~~ 175 (200)
++.+.++.++..+. ++ .+. ...+..+++ +.+.
T Consensus 253 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (472)
T 2fwr_A 253 SLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFN 332 (472)
T ss_dssp HHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHS
T ss_pred HHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhc
Confidence 55555555544322 21 000 011111111 1234
Q ss_pred cccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 176 ERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 176 ~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
...|...|..+++.....++|||||
T Consensus 333 ~~~k~~~l~~~l~~~~~~k~lvF~~ 357 (472)
T 2fwr_A 333 SKNKIRKLREILERHRKDKIIIFTR 357 (472)
T ss_dssp CSHHHHHHHHHHHHTSSSCBCCBCS
T ss_pred ChHHHHHHHHHHHhCCCCcEEEEEC
Confidence 5568999999999877889999996
No 54
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.25 E-value=1.9e-11 Score=117.06 Aligned_cols=117 Identities=10% Similarity=-0.050 Sum_probs=75.7
Q ss_pred hcCccEEEecCccccc-ccC--CCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcccccc----CCCCceee
Q psy13288 15 KKSDFTLKISCPRSQL-TVQ--ELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRS----FGKGDIFN 82 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~-~~~--~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~----~~~~~~~~ 82 (200)
.|+|+|+.+..|..+. ... ..+.++||++||++|+.|.++.++ .++++..+.||.+.... ....+++
T Consensus 272 TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~Iv- 350 (936)
T 4a2w_A 272 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDII- 350 (936)
T ss_dssp TTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEE-
T ss_pred CCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEE-
Confidence 3456666666666332 221 127789999999999999999998 38999999999865211 1123444
Q ss_pred eccccceee-------------eeeeecCCCCChhhccccccchhhhhcHHHHHhh----CCCCcEE-EEEeeCc
Q psy13288 83 AGSVSRITR-------------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRS----LEPKTKV-SAIATFP 139 (200)
Q Consensus 83 ~~TPgrl~~-------------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~----l~~~~Q~-lfSAT~~ 139 (200)
++|||++.. .++|+ ||||++.+.+....+ +...... ..+..|+ ++|||.+
T Consensus 351 I~Tp~~L~~~l~~~~~~~l~~~~liVi-----DEaH~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 351 VVTPQILVNSFEDGTLTSLSIFTLMIF-----DECHNTTGNHPYNVL--MTRYLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp EECHHHHHHHHHSSSCCCGGGCSEEEE-----ETGGGCSTTCHHHHH--HHHHHHHHHTTCSCCCEEEEEESCCC
T ss_pred EecHHHHHHHHHcCccccccCCCEEEE-----ECccccCCCccHHHH--HHHHHHHhhccCCCcCeEEEecCCcc
Confidence 799999872 33344 788999987543333 2333332 1456889 9999984
No 55
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.24 E-value=1.2e-11 Score=124.44 Aligned_cols=178 Identities=10% Similarity=0.004 Sum_probs=104.8
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh------cCCcEEEEeCCcccc-ccCCCCceeeecccc
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK------VNLPLYVESQGTSKF-RSFGKGDIFNAGSVS 87 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~------~~l~~~~~~gg~~~~-~~~~~~~~~~~~TPg 87 (200)
.++|+|+.+..|..+.-...++.+||+++|||+||.|+++.++ .++++...+|+.... +..++.+++ ++||+
T Consensus 951 TGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~Ii-V~TPE 1029 (1724)
T 4f92_B 951 TGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNII-ISTPE 1029 (1724)
T ss_dssp TTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEE-EECHH
T ss_pred CCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEE-EECHH
Confidence 4455666555555332223346689999999999999998876 578899888887641 122345655 89999
Q ss_pred cee--------------eeeeeecCCCCChhhccccccchhhh----hcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHH
Q psy13288 88 RIT--------------RHTFAMTPSVGPIVDRKFGQIFNGQI----LVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEK 148 (200)
Q Consensus 88 rl~--------------~~~~v~d~~~~DEAD~ll~~~f~~~i----~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~ 148 (200)
|+. +.++|+ ||+|+|.+. ....+ ..+..+....+++.|+ ++|||++ +..++++-
T Consensus 1030 kld~llr~~~~~~~l~~v~lvVi-----DE~H~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~-N~~dla~W 1102 (1724)
T 4f92_B 1030 KWDILSRRWKQRKNVQNINLFVV-----DEVHLIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLS-NAKDVAHW 1102 (1724)
T ss_dssp HHHHHHTTTTTCHHHHSCSEEEE-----CCGGGGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBT-THHHHHHH
T ss_pred HHHHHHhCcccccccceeeEEEe-----echhhcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCC-CHHHHHHH
Confidence 973 355566 667988664 33332 1223344566788999 9999997 35565553
Q ss_pred hCCCC-eEEEeccccccccceEEEEEcccccHHH-------HHHHHHh-hCCCCeEEEEeC
Q psy13288 149 HLKDP-YEINLMEELTLKGVTQYYAFVQERQKVH-------CLNTLFS-KCCSLLGVFTCT 200 (200)
Q Consensus 149 ~l~~~-~~i~v~~~~~~~~i~q~~i~~~~~~K~~-------~L~~ll~-~~~~~k~iIF~n 200 (200)
.-.++ ....+..+.-+..+++++...+...+.. .+...+. ....+++||||+
T Consensus 1103 L~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~ 1163 (1724)
T 4f92_B 1103 LGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVP 1163 (1724)
T ss_dssp HTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEES
T ss_pred hCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCC
Confidence 32222 2223332222223454444333322111 1222233 335679999996
No 56
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.22 E-value=5e-13 Score=123.97 Aligned_cols=112 Identities=12% Similarity=-0.060 Sum_probs=67.0
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccccccCCCCceeeeccccceeeee
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSKFRSFGKGDIFNAGSVSRITRHT 93 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~~~~ 93 (200)
.|+++|+++..|..+... .++.+++|++||||||.|+++.++ .++. ... .....++||||+...+
T Consensus 250 TGSGKTl~~ll~il~~l~-~~~~~~lilaPTr~La~Q~~~~l~~~~i~----~~~---------~~l~~v~tp~~ll~~l 315 (673)
T 2wv9_A 250 PGAGKTRRILPQIIKDAI-QKRLRTAVLAPTRVVAAEMAEALRGLPVR----YLT---------PAVQREHSGNEIVDVM 315 (673)
T ss_dssp TTTTTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTTTSCCE----ECC---------C---CCCCSCCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHH-hCCCcEEEEccHHHHHHHHHHHHhcCCee----eec---------ccccccCCHHHHHHHH
Confidence 456777777666633211 256899999999999999999998 4332 111 1111258888886211
Q ss_pred e---------------eecCCCCChhhccccccchhhhhcHHHHHhhC-CCCcEE-EEEeeCchhHHH
Q psy13288 94 F---------------AMTPSVGPIVDRKFGQIFNGQILVPKHVLRSL-EPKTKV-SAIATFPLTVKN 144 (200)
Q Consensus 94 ~---------------v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l-~~~~Q~-lfSAT~~~~v~~ 144 (200)
. -++-.+.||||++ +.++..++ ..+...+ +++.|+ +||||++..+..
T Consensus 316 ~~~~l~~~l~~~~~l~~l~lvViDEaH~~-~~~~~~~~---~~l~~~~~~~~~~vl~~SAT~~~~i~~ 379 (673)
T 2wv9_A 316 CHATLTHRLMSPLRVPNYNLFVMDEAHFT-DPASIAAR---GYIATRVEAGEAAAIFMTATPPGTSDP 379 (673)
T ss_dssp EHHHHHHHHHSSSCCCCCSEEEEESTTCC-CHHHHHHH---HHHHHHHHTTSCEEEEECSSCTTCCCS
T ss_pred HhhhhHHHHhcccccccceEEEEeCCccc-CccHHHHH---HHHHHhccccCCcEEEEcCCCChhhhh
Confidence 0 0111122788998 43333343 3333333 367899 999999877543
No 57
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.18 E-value=2.9e-11 Score=118.04 Aligned_cols=148 Identities=11% Similarity=-0.012 Sum_probs=96.1
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc--------cCCCCceeeecccccee-------eeee
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR--------SFGKGDIFNAGSVSRIT-------RHTF 94 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~--------~~~~~~~~~~~TPgrl~-------~~~~ 94 (200)
++.+++|++||++||.|.++.++ .++++..+.|+.+... ..+..+++ +|||+.+. ..++
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIv-V~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL-IGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEE-EECTHHHHSCCCCSSEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEE-EECHHHHhCCccccccceE
Confidence 45699999999999999999987 4678888777543210 01234554 79998775 3445
Q ss_pred eecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCCCeEEEeccccccccceEEEEE
Q psy13288 95 AMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAF 173 (200)
Q Consensus 95 v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~q~~i~ 173 (200)
|+ ||||++ .... ..+++.++.+.|+ ++|||.+.....++...+.++..+... ......+++++..
T Consensus 730 Ii-----DEaH~~-----g~~~---~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~-~~~r~~i~~~~~~ 795 (1151)
T 2eyq_A 730 IV-----DEEHRF-----GVRH---KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP-PARRLAVKTFVRE 795 (1151)
T ss_dssp EE-----ESGGGS-----CHHH---HHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC-CCBCBCEEEEEEE
T ss_pred EE-----echHhc-----ChHH---HHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC-CCCccccEEEEec
Confidence 55 677994 2233 5666667778999 999999888888877777776554332 1122345555554
Q ss_pred cccccHHHHHHHHHhhC-CCCeEEEEeC
Q psy13288 174 VQERQKVHCLNTLFSKC-CSLLGVFTCT 200 (200)
Q Consensus 174 ~~~~~K~~~L~~ll~~~-~~~k~iIF~n 200 (200)
.+... ....+++.. ..++++||||
T Consensus 796 ~~~~~---i~~~il~~l~~g~qvlvf~~ 820 (1151)
T 2eyq_A 796 YDSMV---VREAILREILRGGQVYYLYN 820 (1151)
T ss_dssp CCHHH---HHHHHHHHHTTTCEEEEECC
T ss_pred CCHHH---HHHHHHHHHhcCCeEEEEEC
Confidence 33322 222333322 4689999997
No 58
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.18 E-value=5.6e-12 Score=111.03 Aligned_cols=117 Identities=13% Similarity=-0.012 Sum_probs=69.0
Q ss_pred hhhcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhhcCCcEEEEeCCccccccCCCCceeeecccccee-
Q psy13288 13 ILKKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEKVNLPLYVESQGTSKFRSFGKGDIFNAGSVSRIT- 90 (200)
Q Consensus 13 ~l~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~- 90 (200)
+=.|+|+|+.+..|.. +.. .++.+++|++||||||.|+++.++ ++.+....|+... .........+.|.|.+.
T Consensus 9 a~TGsGKT~~~l~~~l~~~~--~~g~~~lvl~Pt~~La~Q~~~~~~-~~~v~~~~~~~~~--~~~~~~~~~~~~~~~l~~ 83 (431)
T 2v6i_A 9 LHPGAGKTRRVLPQLVREAV--KKRLRTVILAPTRVVASEMYEALR-GEPIRYMTPAVQS--ERTGNEIVDFMCHSTFTM 83 (431)
T ss_dssp CCTTSCTTTTHHHHHHHHHH--HTTCCEEEEESSHHHHHHHHHHTT-TSCEEEC-----------CCCSEEEEEHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH--hCCCCEEEECcHHHHHHHHHHHhC-CCeEEEEecCccc--cCCCCceEEEEchHHHHH
Confidence 3457899998877764 322 246799999999999999999987 4445444443221 00011122223333221
Q ss_pred ----------eeeeeecCCCCChhhccccccchhhhhcHHHHHhh-CCCCcEE-EEEeeCchhHH
Q psy13288 91 ----------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRS-LEPKTKV-SAIATFPLTVK 143 (200)
Q Consensus 91 ----------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~-l~~~~Q~-lfSAT~~~~v~ 143 (200)
..++|+ ||||++ +.++..+. ..+.+. .+.+.|+ ++|||.+..+.
T Consensus 84 ~l~~~~~~~~l~~vVi-----DEaH~~-~~~~~~~~---~~l~~~~~~~~~~~l~~SAT~~~~~~ 139 (431)
T 2v6i_A 84 KLLQGVRVPNYNLYIM-----DEAHFL-DPASVAAR---GYIETRVSMGDAGAIFMTATPPGTTE 139 (431)
T ss_dssp HHHHTCCCCCCSEEEE-----ESTTCC-SHHHHHHH---HHHHHHHHTTSCEEEEEESSCTTCCC
T ss_pred HHhcCccccCCCEEEE-----eCCccC-CccHHHHH---HHHHHHhhCCCCcEEEEeCCCCcchh
Confidence 234455 677997 66666665 333333 2568999 99999987543
No 59
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.18 E-value=2.8e-11 Score=104.80 Aligned_cols=127 Identities=10% Similarity=0.067 Sum_probs=82.9
Q ss_pred HhhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh--cCC---cEEEEeCCccccc---cCCCCceeee
Q psy13288 12 LILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK--VNL---PLYVESQGTSKFR---SFGKGDIFNA 83 (200)
Q Consensus 12 ~~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~--~~l---~~~~~~gg~~~~~---~~~~~~~~~~ 83 (200)
.+-.|+|+|+.+..+...... ..+.++||++||++|+.|..+.++ .+. ++....|+..... .....++. +
T Consensus 29 ~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~iv-v 106 (494)
T 1wp9_A 29 VLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVI-V 106 (494)
T ss_dssp ECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHHCSEE-E
T ss_pred EcCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccCCCEE-E
Confidence 344556666666666533211 345689999999999999999998 455 8888888865411 01123443 7
Q ss_pred ccccceee------------eeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCch---hHHHHHH
Q psy13288 84 GSVSRITR------------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPL---TVKNFME 147 (200)
Q Consensus 84 ~TPgrl~~------------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~---~v~~~~~ 147 (200)
+||+++.. .++|+ ||||++.+......+ ...+....+..+. ++|||... ++.++..
T Consensus 107 ~T~~~l~~~~~~~~~~~~~~~~vIi-----DEaH~~~~~~~~~~~---~~~~~~~~~~~~~l~lTaTp~~~~~~~~~l~~ 178 (494)
T 1wp9_A 107 ATPQTIENDLLAGRISLEDVSLIVF-----DEAHRAVGNYAYVFI---AREYKRQAKNPLVIGLTASPGSTPEKIMEVIN 178 (494)
T ss_dssp ECHHHHHHHHHTTSCCTTSCSEEEE-----ETGGGCSTTCHHHHH---HHHHHHHCSSCCEEEEESCSCSSHHHHHHHHH
T ss_pred ecHHHHHHHHhcCCcchhhceEEEE-----ECCcccCCCCcHHHH---HHHHHhcCCCCeEEEEecCCCCCcHHHHHHHH
Confidence 99998862 23444 778999876544444 4555555667888 99999963 3444444
Q ss_pred H
Q psy13288 148 K 148 (200)
Q Consensus 148 ~ 148 (200)
.
T Consensus 179 ~ 179 (494)
T 1wp9_A 179 N 179 (494)
T ss_dssp H
T ss_pred h
Confidence 3
No 60
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.17 E-value=1.2e-10 Score=109.64 Aligned_cols=183 Identities=11% Similarity=0.064 Sum_probs=107.3
Q ss_pred chhhHHhHhhhcCccEEEecCccc-c--------c--c-cCCCCeeEEEEcCCHHHHHHHHHHhh--cCCcEEEEeCCcc
Q psy13288 5 SFEHSILLILKKSDFTLKISCPRS-Q--------L--T-VQELSLRLVMCVIFREVLLKISSWEK--VNLPLYVESQGTS 70 (200)
Q Consensus 5 ~~~~~i~~~l~~~~~~l~~~~p~~-~--------~--~-~~~~~~~~lIl~PTRELa~Qi~~~~~--~~l~~~~~~gg~~ 70 (200)
....+|+.++.+.+.++..+...+ + . . ....+.+++|++|||+||.|+.+.+. .+.++...+|+..
T Consensus 97 ~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i 176 (773)
T 2xau_A 97 AQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSI 176 (773)
T ss_dssp GGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEE
T ss_pred HHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheeccee
Confidence 345667777776655554443332 0 0 0 11126789999999999999987665 3333322233221
Q ss_pred c-cccCCCCceeeecccccee-----------eeeeeecCCCCChhhc-cccccchhhhhcHHHHHhhCCCCcEE-EEEe
Q psy13288 71 K-FRSFGKGDIFNAGSVSRIT-----------RHTFAMTPSVGPIVDR-KFGQIFNGQILVPKHVLRSLEPKTKV-SAIA 136 (200)
Q Consensus 71 ~-~~~~~~~~~~~~~TPgrl~-----------~~~~v~d~~~~DEAD~-ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSA 136 (200)
. .........+.++|||++. ..++|+ ||||. +++.++.-.+ +..+.... ++.|+ ++||
T Consensus 177 ~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIl-----DEah~R~ld~d~~~~~--l~~l~~~~-~~~~iIl~SA 248 (773)
T 2xau_A 177 RFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIIL-----DEAHERTLATDILMGL--LKQVVKRR-PDLKIIIMSA 248 (773)
T ss_dssp TTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEE-----CSGGGCCHHHHHHHHH--HHHHHHHC-TTCEEEEEES
T ss_pred ccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEe-----cCccccccchHHHHHH--HHHHHHhC-CCceEEEEec
Confidence 1 0111122223479999887 355556 66794 7875433222 25555544 47899 9999
Q ss_pred eCchhHHHHHHHhCCCCeEEEeccccccccceEEEEEcccccHHH----HHHHHHhhCCCCeEEEEeC
Q psy13288 137 TFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQYYAFVQERQKVH----CLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 137 T~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~q~~i~~~~~~K~~----~L~~ll~~~~~~k~iIF~n 200 (200)
|++. ..+ ..++.++..+.+.... ..++++|..++..++.. .+..++.....+++|||||
T Consensus 249 T~~~--~~l-~~~~~~~~vi~v~gr~--~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~ 311 (773)
T 2xau_A 249 TLDA--EKF-QRYFNDAPLLAVPGRT--YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLT 311 (773)
T ss_dssp CSCC--HHH-HHHTTSCCEEECCCCC--CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECS
T ss_pred cccH--HHH-HHHhcCCCcccccCcc--cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 9964 344 4566666556554222 35788888777666543 3333444446789999996
No 61
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.16 E-value=8.5e-12 Score=110.41 Aligned_cols=127 Identities=13% Similarity=-0.005 Sum_probs=71.0
Q ss_pred cCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhhcCCcEEEEeCCccccccCCCCceeeecccccee-----
Q psy13288 16 KSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEKVNLPLYVESQGTSKFRSFGKGDIFNAGSVSRIT----- 90 (200)
Q Consensus 16 ~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~----- 90 (200)
|+|+|+++..|..+.. ..++.++||++||||||.|+++.++ +..+.. +.............+.+.|||++.
T Consensus 29 GsGKT~~~~~~~l~~~-~~~~~~~lvl~Ptr~La~Q~~~~l~-g~~v~~--~~~~~~~~~~~~~~i~~~t~~~l~~~l~~ 104 (451)
T 2jlq_A 29 GAGKTKRILPSIVREA-LLRRLRTLILAPTRVVAAEMEEALR-GLPIRY--QTPAVKSDHTGREIVDLMCHATFTTRLLS 104 (451)
T ss_dssp TSSCCTTHHHHHHHHH-HHTTCCEEEEESSHHHHHHHHHHTT-TSCEEE--CCTTCSCCCCSSCCEEEEEHHHHHHHHHH
T ss_pred CCCHhhHHHHHHHHHH-HhcCCcEEEECCCHHHHHHHHHHhc-Cceeee--eeccccccCCCCceEEEEChHHHHHHhhC
Confidence 3444444445442111 1246899999999999999999986 222211 111110011122233457888764
Q ss_pred ------eeeeeecCCCCChhhccccccchhhhhcHHHHHh-hCCCCcEE-EEEeeCchhHHHHHHHhCCCCeEEEe
Q psy13288 91 ------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLR-SLEPKTKV-SAIATFPLTVKNFMEKHLKDPYEINL 158 (200)
Q Consensus 91 ------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~-~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v 158 (200)
..++|+ ||||++ +.++...+ ..+.. ..+++.|+ ++|||++.++..+ +..++..+.+
T Consensus 105 ~~~l~~~~~iVi-----DEah~~-~~~~~~~~---~~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~ 168 (451)
T 2jlq_A 105 STRVPNYNLIVM-----DEAHFT-DPCSVAAR---GYISTRVEMGEAAAIFMTATPPGSTDPF---PQSNSPIEDI 168 (451)
T ss_dssp CSCCCCCSEEEE-----ETTTCC-SHHHHHHH---HHHHHHHHTTSCEEEEECSSCTTCCCSS---CCCSSCEEEE
T ss_pred cccccCCCEEEE-----eCCccC-CcchHHHH---HHHHHhhcCCCceEEEEccCCCccchhh---hcCCCceEec
Confidence 345555 667977 55544443 33322 23557999 9999998765432 3345555544
No 62
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.13 E-value=2.2e-12 Score=114.43 Aligned_cols=109 Identities=17% Similarity=0.072 Sum_probs=65.3
Q ss_pred hHhhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhhcCCcEEEEeCCccccccCCCCceeeecccccee
Q psy13288 11 LLILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEKVNLPLYVESQGTSKFRSFGKGDIFNAGSVSRIT 90 (200)
Q Consensus 11 ~~~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~ 90 (200)
..+=.|+|+|+++..|..+... .++.++||++||||||.|+++.++ +..+....+.... -+|||++.
T Consensus 26 v~a~TGsGKT~~~~l~il~~~~-~~~~~~lvl~Ptr~La~Q~~~~l~-g~~v~~~~~~~~~-----------~~t~~~~i 92 (459)
T 2z83_A 26 LDLHPGSGKTRKILPQIIKDAI-QQRLRTAVLAPTRVVAAEMAEALR-GLPVRYQTSAVQR-----------EHQGNEIV 92 (459)
T ss_dssp ECCCTTSCTTTTHHHHHHHHHH-HTTCCEEEEECSHHHHHHHHHHTT-TSCEEECC-------------------CCCSE
T ss_pred EECCCCCCHHHHHHHHHHHHHH-hCCCcEEEECchHHHHHHHHHHhc-CceEeEEeccccc-----------CCCCCcEE
Confidence 3445668888888777632111 246899999999999999999987 2222111111000 13444443
Q ss_pred --------------------eeeeeecCCCCChhhc-----cccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHH
Q psy13288 91 --------------------RHTFAMTPSVGPIVDR-----KFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKN 144 (200)
Q Consensus 91 --------------------~~~~v~d~~~~DEAD~-----ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~ 144 (200)
..++|+ ||||+ ++..+|...+ . .+++.|+ ++|||++.++..
T Consensus 93 ~~~~~~~l~~~l~~~~~l~~~~~iVi-----DEaH~~~~~~~~~~~~~~~~---~-----~~~~~~~il~SAT~~~~~~~ 159 (459)
T 2z83_A 93 DVMCHATLTHRLMSPNRVPNYNLFVM-----DEAHFTDPASIAARGYIATK---V-----ELGEAAAIFMTATPPGTTDP 159 (459)
T ss_dssp EEEEHHHHHHHHHSCC-CCCCSEEEE-----SSTTCCSHHHHHHHHHHHHH---H-----HTTSCEEEEECSSCTTCCCS
T ss_pred EEEchHHHHHHhhccccccCCcEEEE-----ECCccCCchhhHHHHHHHHH---h-----ccCCccEEEEEcCCCcchhh
Confidence 244555 67798 5566665443 1 1367899 999999977644
Q ss_pred H
Q psy13288 145 F 145 (200)
Q Consensus 145 ~ 145 (200)
+
T Consensus 160 ~ 160 (459)
T 2z83_A 160 F 160 (459)
T ss_dssp S
T ss_pred h
Confidence 3
No 63
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.11 E-value=5.1e-12 Score=112.55 Aligned_cols=113 Identities=8% Similarity=0.013 Sum_probs=77.4
Q ss_pred cCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccccC-CCCceeeeccccce
Q psy13288 16 KSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRSF-GKGDIFNAGSVSRI 89 (200)
Q Consensus 16 ~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~~-~~~~~~~~~TPgrl 89 (200)
|+|+|+.+..|..+.-. ....++|||+||++|+.|..+.++ .+.++..+.||.+..... +..++. ++||+++
T Consensus 138 GsGKT~~~~~~~~~~~~-~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~I~-i~T~~~l 215 (510)
T 2oca_A 138 SAGRSLIQALLARYYLE-NYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVV-VGTWQTV 215 (510)
T ss_dssp TTTHHHHHHHHHHHHHH-HCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGGGCTTCSEE-EEEHHHH
T ss_pred CCCHHHHHHHHHHHHHh-CCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccccccCCcEE-EEeHHHH
Confidence 35555555555433211 123499999999999999999998 346788888886652211 233444 7999987
Q ss_pred ee---------eeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhH
Q psy13288 90 TR---------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTV 142 (200)
Q Consensus 90 ~~---------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v 142 (200)
.. .++|+ ||||++.+ +.. ..+++.+++..++ .+|||.+...
T Consensus 216 ~~~~~~~~~~~~liIi-----DE~H~~~~----~~~---~~il~~~~~~~~~l~lSATp~~~~ 266 (510)
T 2oca_A 216 VKQPKEWFSQFGMMMN-----DECHLATG----KSI---SSIISGLNNCMFKFGLSGSLRDGK 266 (510)
T ss_dssp TTSCGGGGGGEEEEEE-----ETGGGCCH----HHH---HHHGGGCTTCCEEEEEESCGGGCS
T ss_pred hhchhhhhhcCCEEEE-----ECCcCCCc----ccH---HHHHHhcccCcEEEEEEeCCCCCc
Confidence 63 34455 67799876 334 7788888888899 9999997664
No 64
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.07 E-value=3.6e-10 Score=113.92 Aligned_cols=158 Identities=7% Similarity=0.057 Sum_probs=97.2
Q ss_pred CCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc-cCCCCceeeecccccee--------------eee
Q psy13288 34 ELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR-SFGKGDIFNAGSVSRIT--------------RHT 93 (200)
Q Consensus 34 ~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~-~~~~~~~~~~~TPgrl~--------------~~~ 93 (200)
.++.++|+++|||+||.|+++.++ .++++...+|+.+..+ .....+++ ++||+++- +++
T Consensus 132 ~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~~~~~~Il-VtTpEkld~llr~~~~~~~l~~v~~ 210 (1724)
T 4f92_B 132 VDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQII-VCTPEKWDIITRKGGERTYTQLVRL 210 (1724)
T ss_dssp TTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTTGGGCSEE-EECHHHHHHHTTSSTTHHHHTTEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccccCCCCEE-EECHHHHHHHHcCCccchhhcCcCE
Confidence 357799999999999999999987 6889999999987632 23345655 79999863 455
Q ss_pred eeecCCCCChhhccccccchhhhh----cHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCC-CCe--EEEeccccccc
Q psy13288 94 FAMTPSVGPIVDRKFGQIFNGQIL----VPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLK-DPY--EINLMEELTLK 165 (200)
Q Consensus 94 ~v~d~~~~DEAD~ll~~~f~~~i~----~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~-~~~--~i~v~~~~~~~ 165 (200)
+|+ ||+|.+ +++....++ .+....+..+++.|+ .+|||+| +..++++ |+. ++. ...++.+.-+-
T Consensus 211 vIi-----DEvH~l-~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~-N~~dvA~-wL~~~~~~~~~~~~~~~RPv 282 (1724)
T 4f92_B 211 IIL-----DEIHLL-HDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLP-NYEDVAT-FLRVDPAKGLFYFDNSFRPV 282 (1724)
T ss_dssp EEE-----TTGGGG-GSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCT-THHHHHH-HTTCCHHHHEEECCGGGCSS
T ss_pred EEE-----ecchhc-CCccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccC-CHHHHHH-HhCCCCCCCeEEECCCCccC
Confidence 666 667755 444333331 112223456788999 9999997 4555554 444 221 11223222223
Q ss_pred cceEEEEEccccc---HHHH----HHHHHhh-CCCCeEEEEeC
Q psy13288 166 GVTQYYAFVQERQ---KVHC----LNTLFSK-CCSLLGVFTCT 200 (200)
Q Consensus 166 ~i~q~~i~~~~~~---K~~~----L~~ll~~-~~~~k~iIF~n 200 (200)
.++|+++.+++.. +... +...+.. ...+++|||||
T Consensus 283 pL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~ 325 (1724)
T 4f92_B 283 PLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVH 325 (1724)
T ss_dssp CEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECS
T ss_pred ccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 4677776665443 2222 2222222 24579999996
No 65
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.05 E-value=4.4e-11 Score=99.07 Aligned_cols=113 Identities=8% Similarity=0.020 Sum_probs=75.8
Q ss_pred cCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccccC-CCCceeeeccccce
Q psy13288 16 KSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFRSF-GKGDIFNAGSVSRI 89 (200)
Q Consensus 16 ~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~~~-~~~~~~~~~TPgrl 89 (200)
|+|+|+.+..+...... ....++||++|||+|+.|..+.++ ....+..+.||....+.. ...++. ++||+++
T Consensus 138 GsGKT~~~~~~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~-v~T~~~l 215 (282)
T 1rif_A 138 SAGRSLIQALLARYYLE-NYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVV-VGTWQTV 215 (282)
T ss_dssp TSCHHHHHHHHHHHHHH-HCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTTCCCTTCSEE-EECHHHH
T ss_pred CCCcHHHHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchhhhccCCcEE-EEchHHH
Confidence 44555544443322111 223489999999999999999998 345677777876552211 234444 7999988
Q ss_pred ee---------eeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhH
Q psy13288 90 TR---------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTV 142 (200)
Q Consensus 90 ~~---------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v 142 (200)
.. .++|+ ||||++.+. .+ ..+++.+++..|+ ++|||.+...
T Consensus 216 ~~~~~~~~~~~~~vIi-----DEaH~~~~~----~~---~~il~~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 216 VKQPKEWFSQFGMMMN-----DECHLATGK----SI---SSIISGLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TTSCGGGGGGEEEEEE-----ETGGGCCHH----HH---HHHTTTCTTCCEEEEECSSCCTTS
T ss_pred HhhHHHHHhhCCEEEE-----ECCccCCcc----cH---HHHHHHhhcCCeEEEEeCCCCCcc
Confidence 72 34444 778999853 44 7888888778999 9999997554
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.03 E-value=9.8e-11 Score=106.34 Aligned_cols=96 Identities=9% Similarity=-0.073 Sum_probs=45.7
Q ss_pred CCeeEEEEcCCHHHHHHHH-HHhh-cCCcEEEEeCCccccccCCCCceeeeccccceeeeee------e-----ecCCCC
Q psy13288 35 LSLRLVMCVIFREVLLKIS-SWEK-VNLPLYVESQGTSKFRSFGKGDIFNAGSVSRITRHTF------A-----MTPSVG 101 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~-~~~~-~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~~~~~------v-----~d~~~~ 101 (200)
...++|||+||++|+.|+. +.++ .+..+..+.++... ...++. ++||+++..... . ++-.+.
T Consensus 234 ~~~~vlil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~----~~~~I~-v~T~~~l~~~~~~~~~~~~~~~~~~~lvIi 308 (590)
T 3h1t_A 234 RKPRILFLADRNVLVDDPKDKTFTPFGDARHKIEGGKVV----KSREIY-FAIYQSIASDERRPGLYKEFPQDFFDLIII 308 (590)
T ss_dssp SCCCEEEEEC-----------CCTTTCSSEEECCC--CC----SSCSEE-EEEGGGC------CCGGGGSCTTSCSEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhcchhhhhhhccCCC----CCCcEE-EEEhhhhccccccccccccCCCCccCEEEE
Confidence 6789999999999999999 8888 44444444444322 133443 799999873210 0 111222
Q ss_pred ChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCch
Q psy13288 102 PIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPL 140 (200)
Q Consensus 102 DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~ 140 (200)
||||++.+.+. ..+ ..+++.++ +.+. ++|||-..
T Consensus 309 DEaH~~~~~~~-~~~---~~il~~~~-~~~~l~lTATP~~ 343 (590)
T 3h1t_A 309 DECHRGSARDN-SNW---REILEYFE-PAFQIGMTATPLR 343 (590)
T ss_dssp SCCC----------C---HHHHHHST-TSEEEEEESSCSC
T ss_pred ECCccccccch-HHH---HHHHHhCC-cceEEEecccccc
Confidence 88899977543 333 78888886 4667 99999653
No 67
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.01 E-value=9.8e-11 Score=110.19 Aligned_cols=166 Identities=11% Similarity=-0.048 Sum_probs=96.8
Q ss_pred hhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc--------cCCCCce
Q psy13288 14 LKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR--------SFGKGDI 80 (200)
Q Consensus 14 l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~--------~~~~~~~ 80 (200)
=.|+|+|+.+..|..+.-. ++.|++|++|||+||.|+++.++ .++++..+.||.+... ..+..++
T Consensus 397 ~TGSGKTlvall~il~~l~--~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~I 474 (780)
T 1gm5_A 397 DVGSGKTVVAQLAILDNYE--AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDV 474 (780)
T ss_dssp CSSSSHHHHHHHHHHHHHH--HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCE
T ss_pred CCCCCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCE
Confidence 3458888888777743211 35799999999999999999987 4799999999976411 0123455
Q ss_pred eeecccccee-------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCchhHHHHHHHhCCC
Q psy13288 81 FNAGSVSRIT-------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPLTVKNFMEKHLKD 152 (200)
Q Consensus 81 ~~~~TPgrl~-------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~~v~~~~~~~l~~ 152 (200)
+ +|||+++. ..++|+ ||||++ |+... ..+.....+.|+ ++|||.+.....+. +..+
T Consensus 475 v-VgT~~ll~~~~~~~~l~lVVI-----DEaHr~---g~~qr-----~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~ 538 (780)
T 1gm5_A 475 V-IGTHALIQEDVHFKNLGLVII-----DEQHRF---GVKQR-----EALMNKGKMVDTLVMSATPIPRSMALA--FYGD 538 (780)
T ss_dssp E-EECTTHHHHCCCCSCCCEEEE-----ESCCCC-------------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCC
T ss_pred E-EECHHHHhhhhhccCCceEEe-----cccchh---hHHHH-----HHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCC
Confidence 4 79999885 344555 667996 22211 112233456889 99999866554433 3333
Q ss_pred CeEEEecc-ccccccceEEEEEcccccHHHHHHHHHh-hC-CCCeEEEEeC
Q psy13288 153 PYEINLME-ELTLKGVTQYYAFVQERQKVHCLNTLFS-KC-CSLLGVFTCT 200 (200)
Q Consensus 153 ~~~i~v~~-~~~~~~i~q~~i~~~~~~K~~~L~~ll~-~~-~~~k~iIF~n 200 (200)
...-.+.. ......+..+++ + .++...+...+. .. ...+++||||
T Consensus 539 ~~~s~i~~~p~~r~~i~~~~~--~-~~~~~~l~~~i~~~l~~g~qvlVf~~ 586 (780)
T 1gm5_A 539 LDVTVIDEMPPGRKEVQTMLV--P-MDRVNEVYEFVRQEVMRGGQAFIVYP 586 (780)
T ss_dssp SSCEEECCCCSSCCCCEECCC--C-SSTHHHHHHHHHHHTTTSCCBCCBCC
T ss_pred cceeeeeccCCCCcceEEEEe--c-cchHHHHHHHHHHHHhcCCcEEEEec
Confidence 21111221 111123443322 2 233333444443 33 4578999996
No 68
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.91 E-value=7e-11 Score=108.90 Aligned_cols=125 Identities=10% Similarity=-0.056 Sum_probs=75.8
Q ss_pred hhhcCccEEEecCccccc-cc---CCCCeeEEEEcCCHHHHHHH-HHHhh----cCCcEEEEeCCcccccc----CCCCc
Q psy13288 13 ILKKSDFTLKISCPRSQL-TV---QELSLRLVMCVIFREVLLKI-SSWEK----VNLPLYVESQGTSKFRS----FGKGD 79 (200)
Q Consensus 13 ~l~~~~~~l~~~~p~~~~-~~---~~~~~~~lIl~PTRELa~Qi-~~~~~----~~l~~~~~~gg~~~~~~----~~~~~ 79 (200)
+=.|+|+|+.+..|..+. .. .....++||++||++|+.|. .+.++ .++++..+.||.+.... .+..+
T Consensus 29 ~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~ 108 (699)
T 4gl2_A 29 LPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCD 108 (699)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHHHSCS
T ss_pred cCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhhcCCC
Confidence 334566777677776432 11 12337899999999999999 99998 23899999998765211 12334
Q ss_pred eeeeccccceeeee-------------eeecCCCCChhhccccccchhhhhcHHHHHhhC-------------CCCcEE-
Q psy13288 80 IFNAGSVSRITRHT-------------FAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSL-------------EPKTKV- 132 (200)
Q Consensus 80 ~~~~~TPgrl~~~~-------------~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l-------------~~~~Q~- 132 (200)
++ ++||+++.... .-++-.+.||||++...++...+ +...+... ++..|+
T Consensus 109 Il-v~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i--~~~~l~~~~~~~~~~~~~~~~~~~~~il 185 (699)
T 4gl2_A 109 II-ISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI--MRHYLMQKLKNNRLKKENKPVIPLPQIL 185 (699)
T ss_dssp EE-EEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSH--HHHHHHHHHHHHHHHC----CCCCCEEE
T ss_pred EE-EECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHH--HHHHHHhhhcccccccccccCCCCCEEE
Confidence 44 79999997221 00111223888999776655554 13333221 146789
Q ss_pred EEEeeCch
Q psy13288 133 SAIATFPL 140 (200)
Q Consensus 133 lfSAT~~~ 140 (200)
++|||.+.
T Consensus 186 ~lTATp~~ 193 (699)
T 4gl2_A 186 GLTASPGV 193 (699)
T ss_dssp EECSCCCC
T ss_pred Eecccccc
Confidence 99999986
No 69
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.86 E-value=5.7e-09 Score=96.87 Aligned_cols=93 Identities=10% Similarity=0.010 Sum_probs=72.9
Q ss_pred eEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccccccCCCCceeeeccccceee---------------eeeeecCCCC
Q psy13288 38 RLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSKFRSFGKGDIFNAGSVSRITR---------------HTFAMTPSVG 101 (200)
Q Consensus 38 ~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~~---------------~~~v~d~~~~ 101 (200)
++++++||||||.|+++.++ .++++....||... .++||||... .++|+
T Consensus 181 ~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~----------iv~TpGr~~~il~~T~e~~~l~~~v~lvVI----- 245 (677)
T 3rc3_A 181 SGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERV----------TVQPNGKQASHVSCTVEMCSVTTPYEVAVI----- 245 (677)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEE----------CCSTTCCCCSEEEEEGGGCCSSSCEEEEEE-----
T ss_pred CeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeE----------EecCCCcccceeEecHhHhhhcccCCEEEE-----
Confidence 46999999999999999999 88999999988766 2367776552 33344
Q ss_pred ChhhccccccchhhhhcHHHHHhhCC-CCcEE-EEEeeCchhHHHHHHHh
Q psy13288 102 PIVDRKFGQIFNGQILVPKHVLRSLE-PKTKV-SAIATFPLTVKNFMEKH 149 (200)
Q Consensus 102 DEAD~ll~~~f~~~i~~i~~i~~~l~-~~~Q~-lfSAT~~~~v~~~~~~~ 149 (200)
||||+|++.+|...+ ..++..++ ++.|+ ++|||. +.+..++...
T Consensus 246 DEaH~l~d~~~g~~~---~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~ 291 (677)
T 3rc3_A 246 DEIQMIRDPARGWAW---TRALLGLCAEEVHLCGEPAAI-DLVMELMYTT 291 (677)
T ss_dssp CSGGGGGCTTTHHHH---HHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH
T ss_pred ecceecCCccchHHH---HHHHHccCccceEEEeccchH-HHHHHHHHhc
Confidence 788999999999988 88888887 67888 999995 4455555544
No 70
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.83 E-value=2.3e-10 Score=90.00 Aligned_cols=95 Identities=12% Similarity=0.006 Sum_probs=55.8
Q ss_pred CCeeEEEEcCCHHHHHH-HHHHhh----cCCcEEEEeCCcccccc----CCCCceeeeccccceee--------------
Q psy13288 35 LSLRLVMCVIFREVLLK-ISSWEK----VNLPLYVESQGTSKFRS----FGKGDIFNAGSVSRITR-------------- 91 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Q-i~~~~~----~~l~~~~~~gg~~~~~~----~~~~~~~~~~TPgrl~~-------------- 91 (200)
...++||++||++|+.| +.+.++ .++++....|+...... .+..++. ++||+++..
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~-v~T~~~l~~~~~~~~~~~~~~~~ 159 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDII-ISTAQILENSLLNLENGEDAGVQ 159 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHHHHCSEE-EEEHHHHHHHHHC-------CCC
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhccCCCEE-EECHHHHHHHHhccCcccccccc
Confidence 36789999999999999 777777 46788888887765211 0113343 799998751
Q ss_pred ----eeeeecCCCCChhhccccccchhhhhcHHHHHhhC-------------CCCcEE-EEEee
Q psy13288 92 ----HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSL-------------EPKTKV-SAIAT 137 (200)
Q Consensus 92 ----~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l-------------~~~~Q~-lfSAT 137 (200)
.++|+ ||||++.+.++...+ +..++... .++.++ ++|||
T Consensus 160 ~~~~~~iIi-----DEah~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 160 LSDFSLIII-----DECHHTNKEAVYNNI--MRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp GGGCSEEEE-----TTC-------CHHHH--HHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred hhcccEEEE-----ECchhhccCCcHHHH--HHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 22333 788999988777665 23333221 146788 99998
No 71
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.78 E-value=8.1e-10 Score=104.34 Aligned_cols=70 Identities=10% Similarity=0.016 Sum_probs=53.6
Q ss_pred cCccEEEecCcc-cccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCccccc--cCCCCceeeecccc
Q psy13288 16 KSDFTLKISCPR-SQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTSKFR--SFGKGDIFNAGSVS 87 (200)
Q Consensus 16 ~~~~~l~~~~p~-~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~~~~--~~~~~~~~~~~TPg 87 (200)
|+|+|+++.+|. .+.. .+.+|+|++||||||.|+++++. .++++.+++||.+... .....++. +||||
T Consensus 102 GeGKTLvf~Lp~~L~aL---~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay~~DIv-yGTpg 177 (997)
T 2ipc_A 102 GEGKTLVATLAVALNAL---TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAYLADVT-YVTNS 177 (997)
T ss_dssp THHHHHHHHHHHHHHHT---TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHHTSSEE-EEEHH
T ss_pred CCchHHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHcCCCEE-EECch
Confidence 678888888888 3322 34589999999999999999998 7999999999976310 11123444 79999
Q ss_pred ce
Q psy13288 88 RI 89 (200)
Q Consensus 88 rl 89 (200)
|+
T Consensus 178 rl 179 (997)
T 2ipc_A 178 EL 179 (997)
T ss_dssp HH
T ss_pred hh
Confidence 99
No 72
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.39 E-value=1.8e-07 Score=75.84 Aligned_cols=85 Identities=8% Similarity=-0.094 Sum_probs=63.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh-cCCc-EEEEeCCccccccCCCCceeeecccccee---------eeeeeecCCCCChh
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK-VNLP-LYVESQGTSKFRSFGKGDIFNAGSVSRIT---------RHTFAMTPSVGPIV 104 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~-~~l~-~~~~~gg~~~~~~~~~~~~~~~~TPgrl~---------~~~~v~d~~~~DEA 104 (200)
..+++|++||++|+.|..+.++ .+++ +..+.|+... ..++. ++||+++. ..++|+ |||
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~-----~~~i~-v~T~~~l~~~~~~~~~~~~llIi-----DEa 201 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-----LKPLT-VSTYDSAYVNAEKLGNRFMLLIF-----DEV 201 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBC-----CCSEE-EEEHHHHHHTHHHHTTTCSEEEE-----ECS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC-----cCCEE-EEeHHHHHhhHHHhcccCCEEEE-----ECC
Confidence 4579999999999999999988 6777 7777777665 55554 79998875 345556 667
Q ss_pred hccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCc
Q psy13288 105 DRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFP 139 (200)
Q Consensus 105 D~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~ 139 (200)
|++.+.+|. .+++.++ ..+. ++|||.+
T Consensus 202 H~l~~~~~~-------~i~~~~~-~~~~l~LSATp~ 229 (237)
T 2fz4_A 202 HHLPAESYV-------QIAQMSI-APFRLGLTATFE 229 (237)
T ss_dssp SCCCTTTHH-------HHHHTCC-CSEEEEEEESCC
T ss_pred ccCCChHHH-------HHHHhcc-CCEEEEEecCCC
Confidence 999876543 4455554 5677 9999975
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.32 E-value=3.3e-08 Score=95.54 Aligned_cols=110 Identities=10% Similarity=0.043 Sum_probs=66.2
Q ss_pred hcCccEEEecCcccc-cccCCCCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCcccc---ccC--CCCceeeecccc
Q psy13288 15 KKSDFTLKISCPRSQ-LTVQELSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSKF---RSF--GKGDIFNAGSVS 87 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~-~~~~~~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~~---~~~--~~~~~~~~~TPg 87 (200)
.|+|+|+.+ .+..+ +.......++|||+||+||+.|+.+.++ ..-. .+.||.+.. +.+ +..+++ ++||+
T Consensus 309 TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~--~v~~~~s~~~l~~~L~~~~~~Ii-VtTiq 384 (1038)
T 2w00_A 309 TGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQRFSPD--SVNGSENTAGLKRNLDKDDNKII-VTTIQ 384 (1038)
T ss_dssp TTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHHHTTSTT--CSSSSCCCHHHHHHHHCSSCCEE-EEEHH
T ss_pred CCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHHHHhccc--ccccccCHHHHHHHhcCCCCCEE-EEEHH
Confidence 456666654 33322 2222344699999999999999999988 1111 122333220 111 123443 79999
Q ss_pred ceee--------------eeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeCch
Q psy13288 88 RITR--------------HTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATFPL 140 (200)
Q Consensus 88 rl~~--------------~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~~~ 140 (200)
++.. .++|+ ||||++...++ . ..|.+.+| +.+. .||||...
T Consensus 385 kl~~~l~~~~~~~~~~~~~lvIi-----DEAHrs~~~~~---~---~~I~~~~p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 385 KLNNLMKAESDLPVYNQQVVFIF-----DECHRSQFGEA---Q---KNLKKKFK-RYYQFGFTGTPIF 440 (1038)
T ss_dssp HHHHHHHHCCCCGGGGSCEEEEE-----ESCCTTHHHHH---H---HHHHHHCS-SEEEEEEESSCCC
T ss_pred HHHHHHhcccchhccccccEEEE-----EccchhcchHH---H---HHHHHhCC-cccEEEEeCCccc
Confidence 8862 12233 78899875433 3 56677776 5788 99999753
No 74
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.02 E-value=2e-06 Score=76.01 Aligned_cols=110 Identities=13% Similarity=-0.010 Sum_probs=66.8
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh---cCCcEEEEeCCccccccCCCCceeeecccccee-
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK---VNLPLYVESQGTSKFRSFGKGDIFNAGSVSRIT- 90 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~---~~l~~~~~~gg~~~~~~~~~~~~~~~~TPgrl~- 90 (200)
.|.|+|+....-...........++||++|+ .|+.|..++++ .++++....|+... ......++. ++||+++.
T Consensus 65 ~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~~~~v~~~~g~~~~-~~~~~~~iv-i~t~~~l~~ 141 (500)
T 1z63_A 65 MGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFAPHLRFAVFHEDRSK-IKLEDYDII-LTTYAVLLR 141 (500)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCTTSCEEECSSSTTS-CCGGGSSEE-EEEHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCCCceEEEEecCchh-ccccCCcEE-EeeHHHHhc
Confidence 3455555432222222223334579999995 58899888888 56777776666532 112233444 78998876
Q ss_pred --------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEE-EEEeeC
Q psy13288 91 --------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKV-SAIATF 138 (200)
Q Consensus 91 --------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~-lfSAT~ 138 (200)
..++|+ ||||++-+.+. .. ...+..++ ..+. ++|||-
T Consensus 142 ~~~l~~~~~~~vIv-----DEaH~~kn~~~--~~---~~~l~~l~-~~~~l~LTaTP 187 (500)
T 1z63_A 142 DTRLKEVEWKYIVI-----DEAQNIKNPQT--KI---FKAVKELK-SKYRIALTGTP 187 (500)
T ss_dssp CHHHHTCCEEEEEE-----ETGGGGSCTTS--HH---HHHHHTSC-EEEEEEECSSC
T ss_pred cchhcCCCcCEEEE-----eCccccCCHhH--HH---HHHHHhhc-cCcEEEEecCC
Confidence 234555 67799976542 22 45566664 3456 999996
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.88 E-value=1.2e-06 Score=79.19 Aligned_cols=56 Identities=14% Similarity=-0.038 Sum_probs=44.9
Q ss_pred HhHhhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcc
Q psy13288 10 ILLILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTS 70 (200)
Q Consensus 10 i~~~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~ 70 (200)
+..+-.|+|+|+++++|..+ ...+++|++|||||+.|+.++++ .++++..+.|+.+
T Consensus 26 ~~~a~TGtGKT~~~l~p~l~-----~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~ 86 (551)
T 3crv_A 26 ALNAPTGSGKTLFSLLVSLE-----VKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPS 86 (551)
T ss_dssp EEECCTTSSHHHHHHHHHHH-----HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHH
T ss_pred EEECCCCccHHHHHHHHHHh-----CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccccc
Confidence 33455678899999998865 45799999999999999999988 3788887777544
No 76
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.78 E-value=2.2e-05 Score=61.32 Aligned_cols=54 Identities=13% Similarity=-0.007 Sum_probs=32.0
Q ss_pred HHHhCCCCeEEEec-cccccccceEEEEEcccccHHHHHHHHHhhCCCCeEEEEeC
Q psy13288 146 MEKHLKDPYEINLM-EELTLKGVTQYYAFVQERQKVHCLNTLFSKCCSLLGVFTCT 200 (200)
Q Consensus 146 ~~~~l~~~~~i~v~-~~~~~~~i~q~~i~~~~~~K~~~L~~ll~~~~~~k~iIF~n 200 (200)
...|+++|..|.++ .+.+..+|+|+|+.+++++|...|..+++.. .+++||||+
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~ 62 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAE 62 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECS
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEEC
Confidence 35689999999887 6677889999999999999999999999874 468999996
No 77
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=97.74 E-value=3e-06 Score=78.38 Aligned_cols=67 Identities=6% Similarity=-0.065 Sum_probs=35.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh------------------cCCc-EEEEeCCccccccCCCCceeeeccccceee-----
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK------------------VNLP-LYVESQGTSKFRSFGKGDIFNAGSVSRITR----- 91 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~------------------~~l~-~~~~~gg~~~~~~~~~~~~~~~~TPgrl~~----- 91 (200)
.++..+..|++||+.|+...-. ..++ ...+.||.+..+.+..... =+|||||..
T Consensus 255 ~~~~~i~~i~~el~~qi~~~~~~~~~~ea~~L~~~~~~~~e~l~~~~~~~G~e~~~~~~~~~~~--g~tpg~LlDyl~~~ 332 (661)
T 2d7d_A 255 KMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPP--GSTPYTLLDYFPDD 332 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCCTTGGGGHHHHTTCCT--TCCCBCGGGGSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhHhHHHHhhhcCeeccchhHHHHHccccC--CCCccHHHHHcccC
Confidence 3455555667889888754210 0111 1234566666322211111 189999983
Q ss_pred eeeeecCCCCChhhcccc
Q psy13288 92 HTFAMTPSVGPIVDRKFG 109 (200)
Q Consensus 92 ~~~v~d~~~~DEAD~ll~ 109 (200)
.++|+ ||||+|++
T Consensus 333 ~llVl-----DEa~~~l~ 345 (661)
T 2d7d_A 333 FMIVV-----DESHVTIP 345 (661)
T ss_dssp CEEEE-----ETHHHHHH
T ss_pred cEEEE-----ecHHHHHH
Confidence 24455 67799874
No 78
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.41 E-value=7.8e-05 Score=71.69 Aligned_cols=115 Identities=11% Similarity=-0.033 Sum_probs=63.7
Q ss_pred hcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh--cCCcEEEEeCCccc------cccCCCCceeeeccc
Q psy13288 15 KKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK--VNLPLYVESQGTSK------FRSFGKGDIFNAGSV 86 (200)
Q Consensus 15 ~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~--~~l~~~~~~gg~~~------~~~~~~~~~~~~~TP 86 (200)
-|.|+|+...............-++||++|| .|+.|-.+.+. .++++....|+... .+.+...++. ++|+
T Consensus 179 tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~~~~~~~~~~~~~~~~~~~~dIv-I~T~ 256 (968)
T 3dmq_A 179 VGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLV-ICSL 256 (968)
T ss_dssp TTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEECCHHHHHHHHHTTCSSSTTCSEE-EECH
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEEccchhhhhhhhcccccccCCEE-EEcH
Confidence 3455555433333222222233479999999 99999988885 66776655444311 1223334444 6887
Q ss_pred ccee-------------eeeeeecCCCCChhhccccccchhhhhcHHHHHhhC-CCCcEE-EEEeeC
Q psy13288 87 SRIT-------------RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSL-EPKTKV-SAIATF 138 (200)
Q Consensus 87 grl~-------------~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l-~~~~Q~-lfSAT~ 138 (200)
+.+. ..++|+ ||||++-+.+..... ....++.+ .+..+. ++|||-
T Consensus 257 ~~L~~~~~~~~~l~~~~~dlVIv-----DEAH~~kn~~~~~s~--~~~~l~~L~~~~~~~L~LTATP 316 (968)
T 3dmq_A 257 DFARRSKQRLEHLCEAEWDLLVV-----DEAHHLVWSEDAPSR--EYQAIEQLAEHVPGVLLLTATP 316 (968)
T ss_dssp HHHHTSTTTTHHHHTSCCCEEEE-----CCSSCCCCBTTBCCH--HHHHHHHHHTTCSSEEESCSSC
T ss_pred HHHhhCHHHHHHhhhcCCCEEEe-----hhhHhhcCCCCcchH--HHHHHHHHhhcCCcEEEEEcCC
Confidence 7663 233444 777999765433210 02233333 234457 899995
No 79
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.045 Score=51.35 Aligned_cols=91 Identities=10% Similarity=-0.036 Sum_probs=54.3
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh---cCCcEEEEeCCcccc----------------ccCCCCceeeecccccee------
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK---VNLPLYVESQGTSKF----------------RSFGKGDIFNAGSVSRIT------ 90 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~---~~l~~~~~~gg~~~~----------------~~~~~~~~~~~~TPgrl~------ 90 (200)
.-.+||++| ..|..|-.+.++ .++++.+..|+.... ....+.++. ++|++.+.
T Consensus 286 ~~~~LIV~P-~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvv-itTy~~l~~~~~~l 363 (800)
T 3mwy_W 286 NGPHIIVVP-LSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVL-LTTYEYILKDRAEL 363 (800)
T ss_dssp CSCEEEECC-TTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEE-EECTTHHHHTHHHH
T ss_pred CCCEEEEEC-chHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEE-EecHHHHHhhHHHH
Confidence 345899999 667777777777 578887777765421 011122333 57777665
Q ss_pred ----eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEEEEEeeC
Q psy13288 91 ----RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKVSAIATF 138 (200)
Q Consensus 91 ----~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~lfSAT~ 138 (200)
..++|+ ||||++-+.+ ... ...+..++....++.|||-
T Consensus 364 ~~~~w~~vIv-----DEaH~lkn~~--s~~---~~~l~~l~~~~rl~LTgTP 405 (800)
T 3mwy_W 364 GSIKWQFMAV-----DEAHRLKNAE--SSL---YESLNSFKVANRMLITGTP 405 (800)
T ss_dssp HTSEEEEEEE-----TTGGGGCCSS--SHH---HHHHTTSEEEEEEEECSCC
T ss_pred hcCCcceeeh-----hhhhhhcCch--hHH---HHHHHHhhhccEEEeeCCc
Confidence 344555 7779995432 222 4555666433333889995
No 80
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.05 E-value=0.012 Score=54.34 Aligned_cols=15 Identities=20% Similarity=-0.166 Sum_probs=12.1
Q ss_pred CCcEE-EEEeeCchhH
Q psy13288 128 PKTKV-SAIATFPLTV 142 (200)
Q Consensus 128 ~~~Q~-lfSAT~~~~v 142 (200)
...|+ +||||.+...
T Consensus 379 ~~~q~i~~SAT~~~~~ 394 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFE 394 (664)
T ss_dssp TCSEEEEEESSCCHHH
T ss_pred hcCCEEEEecCCCHHH
Confidence 46899 9999998654
No 81
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.25 E-value=0.0018 Score=59.31 Aligned_cols=60 Identities=12% Similarity=-0.042 Sum_probs=46.3
Q ss_pred HhHhhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeCCcc
Q psy13288 10 ILLILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQGTS 70 (200)
Q Consensus 10 i~~~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~gg~~ 70 (200)
+..+-.|.|+|+++++|..+.-. ..+.+++|++|||||+.|+.+.++ .++++..+.|+.+
T Consensus 26 ~~~apTGtGKT~a~l~p~l~~~~-~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~l~gr~~ 90 (620)
T 4a15_A 26 ALESPTGSGKTIMALKSALQYSS-ERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGRVN 90 (620)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHH-HHTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEECCCHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhhh-hcCCeEEEECCCHHHHHHHHHHHHHHhhccCeEEEEEECCCc
Confidence 34455678999999998843211 135699999999999999999988 4788888888765
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.15 E-value=0.012 Score=53.80 Aligned_cols=23 Identities=4% Similarity=-0.034 Sum_probs=20.3
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK 57 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~ 57 (200)
.+.++++++||+++|.|+.+.+.
T Consensus 195 ~~~~vll~APTg~AA~~L~e~~~ 217 (608)
T 1w36_D 195 ERCRIRLAAPTGKAAARLTESLG 217 (608)
T ss_dssp CCCCEEEEBSSHHHHHHHHHHHT
T ss_pred CCCeEEEEeCChhHHHHHHHHHH
Confidence 46799999999999999988776
No 83
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=93.99 E-value=0.012 Score=52.77 Aligned_cols=54 Identities=15% Similarity=-0.025 Sum_probs=40.2
Q ss_pred HHhHhhhcCccEEEecCcccccccCCCCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeC
Q psy13288 9 SILLILKKSDFTLKISCPRSQLTVQELSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQ 67 (200)
Q Consensus 9 ~i~~~l~~~~~~l~~~~p~~~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~g 67 (200)
.+..+-.|.|+|+++.+|..+ ...+++|++||++|+.|+.+.+. .++++..+.|
T Consensus 29 ~~~~a~TGtGKT~~~l~~~~~-----~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~g 83 (540)
T 2vl7_A 29 LLLNAKPGLGKTVFVEVLGMQ-----LKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLIG 83 (540)
T ss_dssp EEEECCTTSCHHHHHHHHHHH-----HTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC--
T ss_pred EEEEcCCCCcHHHHHHHHHHh-----CCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEecC
Confidence 344455678888888888743 25799999999999999999888 6666665554
No 84
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=90.72 E-value=0.28 Score=44.82 Aligned_cols=90 Identities=10% Similarity=-0.078 Sum_probs=52.2
Q ss_pred eeEEEEcCCHHHHHHHHHHhh----cCCcEEEEeCCccccc-----cC-------CCCceeeecccccee----------
Q psy13288 37 LRLVMCVIFREVLLKISSWEK----VNLPLYVESQGTSKFR-----SF-------GKGDIFNAGSVSRIT---------- 90 (200)
Q Consensus 37 ~~~lIl~PTRELa~Qi~~~~~----~~l~~~~~~gg~~~~~-----~~-------~~~~~~~~~TPgrl~---------- 90 (200)
-++||++|+ .|+.|-.++++ ..+.+....||....+ .+ ...++. ++|++.+.
T Consensus 115 ~~~LiV~P~-sll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vv-i~ty~~l~~~~~~l~~~~ 192 (644)
T 1z3i_X 115 DKVIVVSPS-SLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPIL-IISYETFRLHAEVLHKGK 192 (644)
T ss_dssp SCEEEEECH-HHHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEE-EEEHHHHHHHTTTTTTSC
T ss_pred CcEEEEecH-HHHHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEE-EeeHHHHHhhHHHhhcCC
Confidence 468999997 77778777776 3467777777753210 00 012333 56665543
Q ss_pred eeeeeecCCCCChhhccccccchhhhhcHHHHHhhCCCCcEEEEEeeC
Q psy13288 91 RHTFAMTPSVGPIVDRKFGQIFNGQILVPKHVLRSLEPKTKVSAIATF 138 (200)
Q Consensus 91 ~~~~v~d~~~~DEAD~ll~~~f~~~i~~i~~i~~~l~~~~Q~lfSAT~ 138 (200)
..++|+ ||||++-+.+.. . ...+..++..+.++.|||-
T Consensus 193 ~~~vI~-----DEaH~ikn~~~~--~---~~al~~l~~~~rl~LTgTP 230 (644)
T 1z3i_X 193 VGLVIC-----DEGHRLKNSDNQ--T---YLALNSMNAQRRVLISGTP 230 (644)
T ss_dssp CCEEEE-----TTGGGCCTTCHH--H---HHHHHHHCCSEEEEECSSC
T ss_pred ccEEEE-----ECceecCChhhH--H---HHHHHhcccCcEEEEecCc
Confidence 223444 778999664322 2 3444455544444889995
No 85
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=90.10 E-value=0.57 Score=43.98 Aligned_cols=68 Identities=10% Similarity=-0.013 Sum_probs=50.1
Q ss_pred EE-EEEeeCchhHHHHHHHhCCCCeEEEeccccccccceE-EEEEcccccHHHHHHHHHhhC--CCCeEEEEeC
Q psy13288 131 KV-SAIATFPLTVKNFMEKHLKDPYEINLMEELTLKGVTQ-YYAFVQERQKVHCLNTLFSKC--CSLLGVFTCT 200 (200)
Q Consensus 131 Q~-lfSAT~~~~v~~~~~~~l~~~~~i~v~~~~~~~~i~q-~~i~~~~~~K~~~L~~ll~~~--~~~k~iIF~n 200 (200)
.+ -+|+|...+..++.+.|- .-.+.++.+.....+.+ ..+++...+|..++...+... ...|+||||+
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~--l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~ 482 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYG--MEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTT 482 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSC--CCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred HHeEECCCCchHHHHHHHHhC--CeEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 56 789999888888887773 33555554444445544 467788889999999888754 4678999996
No 86
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=87.03 E-value=0.17 Score=47.43 Aligned_cols=50 Identities=12% Similarity=0.095 Sum_probs=41.9
Q ss_pred hcCccEEEecCccc-ccccCCCCeeEEEEcCCHHHHHHHHHHhh-----cCCcEEEEeC
Q psy13288 15 KKSDFTLKISCPRS-QLTVQELSLRLVMCVIFREVLLKISSWEK-----VNLPLYVESQ 67 (200)
Q Consensus 15 ~~~~~~l~~~~p~~-~~~~~~~~~~~lIl~PTRELa~Qi~~~~~-----~~l~~~~~~g 67 (200)
.|+|+||....|.- .. ..+-++.|++||++||.|-++++. .++++.++..
T Consensus 97 TGEGKTLva~lp~~lnA---L~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~ 152 (822)
T 3jux_A 97 TGEGKTLAATMPIYLNA---LIGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINS 152 (822)
T ss_dssp TTSCHHHHTHHHHHHHH---TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred CCCCccHHHHHHHHHHH---hcCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcC
Confidence 67899998888873 22 235679999999999999999998 8999999887
No 87
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=58.54 E-value=14 Score=26.96 Aligned_cols=37 Identities=5% Similarity=-0.198 Sum_probs=32.0
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
..-++||.++|++-|..+.+.+. .++.+..+.|+.+.
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~ 70 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTV 70 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 34589999999999999999998 78889988888653
No 88
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=54.77 E-value=16 Score=26.44 Aligned_cols=36 Identities=8% Similarity=0.033 Sum_probs=31.5
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
.-++||.++|++-+..+.+.++ .++.+..+.|+.+.
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~ 71 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQ 71 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4579999999999999999998 88899999888653
No 89
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=54.71 E-value=7.6 Score=31.23 Aligned_cols=27 Identities=7% Similarity=-0.098 Sum_probs=22.4
Q ss_pred cccccHHHHHHHHHhhC--CCCeEEEEeC
Q psy13288 174 VQERQKVHCLNTLFSKC--CSLLGVFTCT 200 (200)
Q Consensus 174 ~~~~~K~~~L~~ll~~~--~~~k~iIF~n 200 (200)
+....|+..|..++... ...++||||+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~ 120 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQ 120 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 44567999999999876 6789999996
No 90
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=53.49 E-value=17 Score=26.20 Aligned_cols=37 Identities=5% Similarity=-0.015 Sum_probs=31.7
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
..-++||.++|++-|..+.+.++ .++.+..+.|+.+.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 66 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQ 66 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCH
Confidence 34579999999999999999998 78888888888653
No 91
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=48.64 E-value=24 Score=26.42 Aligned_cols=36 Identities=6% Similarity=-0.001 Sum_probs=31.5
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
..++||.++|++-+..+.+.++ .++++..+.|+.+.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~ 90 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQ 90 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4579999999999999999998 88899988888653
No 92
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=44.64 E-value=28 Score=25.42 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=31.3
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
.-++||.++|++-+..+.+.++ .++.+....|+.+.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~ 67 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQ 67 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCH
Confidence 4579999999999999999998 78889888888653
No 93
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=43.20 E-value=29 Score=25.76 Aligned_cols=37 Identities=5% Similarity=-0.126 Sum_probs=28.8
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
..-++||.++|++-|..+.+.++ .++.+..+.|+.+.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~ 82 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQ 82 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC-----
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCH
Confidence 45689999999999999999998 78899888888764
No 94
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=39.90 E-value=34 Score=25.90 Aligned_cols=36 Identities=11% Similarity=-0.038 Sum_probs=31.6
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
.-++||.+||++-+..+.+.+. .++.+..+.|+.+.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~ 67 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQ 67 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCH
Confidence 3489999999999999999998 78899999998654
No 95
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=34.86 E-value=73 Score=29.20 Aligned_cols=37 Identities=5% Similarity=-0.045 Sum_probs=32.6
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
+.-++||.+|||+-+..+++.++ .++++..+.|+.+.
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q 432 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDV 432 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCG
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCH
Confidence 34589999999999999999998 78999999998765
No 96
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=30.34 E-value=66 Score=25.58 Aligned_cols=37 Identities=5% Similarity=-0.055 Sum_probs=31.9
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
...++||.+||++-|..+++.++ .+.++....|+.+.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 274 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQ 274 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCH
Confidence 45679999999999999999998 78888888888653
No 97
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=29.41 E-value=67 Score=25.95 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=31.9
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
..-++||.++|++-|..+++.++ .++.+....|+.+.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 286 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQ 286 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCH
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCH
Confidence 34589999999999999999998 78888888888653
No 98
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=28.32 E-value=82 Score=25.73 Aligned_cols=37 Identities=5% Similarity=-0.126 Sum_probs=32.5
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
..-++||.++|++-|..+++.++ .+..+....|+.+.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~ 312 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQ 312 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCH
Confidence 46689999999999999999998 78889888888764
No 99
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=28.08 E-value=63 Score=26.32 Aligned_cols=36 Identities=6% Similarity=-0.136 Sum_probs=31.5
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
.-++||.++|++-|..+++.++ .+..+....|+.+.
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 302 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMV 302 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCH
Confidence 4589999999999999999998 78888888888653
No 100
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=26.53 E-value=77 Score=25.78 Aligned_cols=36 Identities=3% Similarity=-0.036 Sum_probs=31.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
.-++||.++|++-+..+++.++ .+..+....|+.+.
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 294 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQ 294 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCH
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCH
Confidence 4589999999999999999998 78888888888653
No 101
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=24.92 E-value=83 Score=25.47 Aligned_cols=36 Identities=11% Similarity=-0.032 Sum_probs=31.3
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
.-++||.++|++-+..+.+.++ .++.+..+.|+.+.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~ 64 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQ 64 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCT
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCH
Confidence 4579999999999999999998 78889999988654
No 102
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=30.74 E-value=15 Score=26.70 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=31.1
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
..-++||.++|++-|..+.+.++ .++.+..+.|+.+.
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~ 66 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQ 66 (170)
Confidence 34589999999999999999998 77888888887654
No 103
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=24.63 E-value=79 Score=25.40 Aligned_cols=37 Identities=5% Similarity=-0.125 Sum_probs=31.9
Q ss_pred CCeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 35 LSLRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 35 ~~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
..-++||.++|++-|..+++.++ .+.++....|+.+.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 279 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQT 279 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCH
Confidence 34689999999999999999998 78888888888653
No 104
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=23.90 E-value=83 Score=25.74 Aligned_cols=35 Identities=6% Similarity=-0.001 Sum_probs=30.9
Q ss_pred eeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCCccc
Q psy13288 37 LRLVMCVIFREVLLKISSWEK-VNLPLYVESQGTSK 71 (200)
Q Consensus 37 ~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg~~~ 71 (200)
-++||.++|++-+..+.+.++ .++++..+.|+.+.
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~ 312 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQ 312 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCH
T ss_pred CcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCH
Confidence 489999999999999999998 78888888888653
No 105
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=20.48 E-value=83 Score=26.73 Aligned_cols=33 Identities=3% Similarity=-0.145 Sum_probs=28.5
Q ss_pred CeeEEEEcCCHHHHHHHHHHhh-cCCcEEEEeCC
Q psy13288 36 SLRLVMCVIFREVLLKISSWEK-VNLPLYVESQG 68 (200)
Q Consensus 36 ~~~~lIl~PTRELa~Qi~~~~~-~~l~~~~~~gg 68 (200)
+-+++|.+||++-|..+++.++ .++++..+.|.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ 210 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK 210 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch
Confidence 4589999999999999999998 77888887773
Done!