RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13288
(200 letters)
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 42.3 bits (98), Expect = 8e-06
Identities = 26/29 (89%), Positives = 29/29 (100%)
Query: 161 ELTLKGVTQYYAFVQERQKVHCLNTLFSK 189
ELTLKG+TQYYAFV+ERQK+HCLNTLFSK
Sbjct: 1 ELTLKGITQYYAFVEERQKLHCLNTLFSK 29
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 37.3 bits (85), Expect = 5e-04
Identities = 21/25 (84%), Positives = 21/25 (84%)
Query: 136 ATFPLTVKNFMEKHLKDPYEINLME 160
ATFPLTVK FM KHL PYEINLME
Sbjct: 182 ATFPLTVKEFMVKHLHKPYEINLME 206
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 35.3 bits (80), Expect = 0.002
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 160 EELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKCCSLLGVFTC 199
+ELTL+G+ Q++ V+ E K L L+ V C
Sbjct: 1 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFC 41
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 34.6 bits (78), Expect = 0.005
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 136 ATFPLTVKNFMEKHLKDPYEIN 157
ATFPL+V+ FM HL+ PYEIN
Sbjct: 185 ATFPLSVQKFMNSHLEKPYEIN 206
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 32.0 bits (71), Expect = 0.029
Identities = 7/24 (29%), Positives = 18/24 (75%)
Query: 136 ATFPLTVKNFMEKHLKDPYEINLM 159
AT P +K F++K++++P ++++
Sbjct: 186 ATIPEKLKPFLKKYMENPTFVHVL 209
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 29.8 bits (66), Expect = 0.18
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 120 KHVLRSLEPKTKVSAI-ATFPLTVKNFMEKHLKDPYEINL 158
V R L P T+V I AT P + K + DP I +
Sbjct: 181 YDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV 220
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 29.8 bits (66), Expect = 0.18
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 105 DRKFGQIFNGQILVPKHVLRSLEPKTKVSAI-ATFPLTVKNFMEKHLKDPYEI 156
D F QI + L P T+V + AT P V K +++P I
Sbjct: 161 DEMLSSGFKEQI---YQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRI 210
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 29.5 bits (65), Expect = 0.20
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 136 ATFPLTVKNFMEKHLKDPYEI 156
AT ++ K ++DP EI
Sbjct: 185 ATLSKEIRPVCRKFMQDPMEI 205
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 29.1 bits (64), Expect = 0.31
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 136 ATFPLTVKNFMEKHLKDPYEINL 158
AT P V +K ++DP I +
Sbjct: 194 ATMPSDVLEVTKKFMRDPIRILV 216
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 28.7 bits (63), Expect = 0.38
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 136 ATFPLTVKNFMEKHLKDPYEIN 157
ATFP ++ L + +
Sbjct: 215 ATFPKEIQKLAADFLYNYIFMT 236
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 28.1 bits (62), Expect = 0.56
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 136 ATFPLTVKNFMEKHLKDPYEINL 158
AT P + N +K++ D I
Sbjct: 184 ATMPREILNLAKKYMGDYSFIKA 206
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 27.3 bits (59), Expect = 1.1
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 162 LTLKGVTQYYAFVQERQ-KVHCLNTLFSK 189
LTL + QYY + R+ K L ++
Sbjct: 1 LTLNNIRQYYVLCEHRKDKYQALCNIYGS 29
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.6 bits (57), Expect = 1.6
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 166 GVTQYYAFVQERQKVHCLNTLFSK 189
G+ QYY +++ +K L L
Sbjct: 1 GLQQYYVKLKDNEKNRKLFDLLDV 24
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 123
Score = 25.1 bits (54), Expect = 3.9
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 157 NLMEELTLKGVTQYYAFVQERQKVH 181
+ + T T + + Q +
Sbjct: 2 GFLNQFTEDKPTLNFFYQQVKNDYM 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.138 0.404
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 694,273
Number of extensions: 29992
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 15
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.2 bits)