BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1329
(465 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KDO|A Chain A, Structure Of The Human Shwachman-Bodian-Diamond Syndrome
Protein, Sbds
Length = 252
Score = 298 bits (762), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 155/296 (52%), Positives = 197/296 (66%), Gaps = 53/296 (17%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +E
Sbjct: 5 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVE------------------ 46
Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
KD+DEVLQTH+VF NVSKGQ A KEDL AF
Sbjct: 47 ----------------------------KDLDEVLQTHSVFVNVSKGQVAKKEDLISAFG 78
Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
T+DQTEICK IL KGE+Q+SDKER +Q+E F+DIATIV++KC+N ETKRP+TV +IE
Sbjct: 79 TDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERA 138
Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVR--VEVSAGXXXXXXXXXXXXX 333
+K IH+SV NK++KQQALEVI LK+ M IERA MR+R + V+ G
Sbjct: 139 MKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPL--- 195
Query: 334 CATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEE 389
+E+E++ G L ++CLIDPG +REIDEL++ ET+G+G+LE+LNLK+V EG+E
Sbjct: 196 -IKVIESEDY-GQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDE 249
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 69/88 (78%), Positives = 78/88 (88%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 5 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 64
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL AF T+DQTEICK IL K
Sbjct: 65 GQVAKKEDLISAFGTDDQTEICKQILTK 92
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 55/71 (77%)
Query: 377 ELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVN 436
++L EV ++ER +Q+E F+DIATIV++KC+N ETKRP+TV +IE +K IH+SV
Sbjct: 88 QILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVK 147
Query: 437 VNKNSKQQALE 447
NK++KQQALE
Sbjct: 148 TNKSTKQQALE 158
>pdb|2L9N|A Chain A, Structure Of The Human Shwachman-Bodian-Diamond Syndrome
(Sbds) Protein
Length = 252
Score = 298 bits (762), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 155/296 (52%), Positives = 197/296 (66%), Gaps = 53/296 (17%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +E
Sbjct: 5 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVE------------------ 46
Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
KD+DEVLQTH+VF NVSKGQ A KEDL AF
Sbjct: 47 ----------------------------KDLDEVLQTHSVFVNVSKGQVAKKEDLISAFG 78
Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
T+DQTEICK IL KGE+Q+SDKER +Q+E F+DIATIV++KC+N ETKRP+TV +IE
Sbjct: 79 TDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERA 138
Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVR--VEVSAGXXXXXXXXXXXXX 333
+K IH+SV NK++KQQALEVI LK+ M IERA MR+R + V+ G
Sbjct: 139 MKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPL--- 195
Query: 334 CATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEE 389
+E+E++ G L ++CLIDPG +REIDEL++ ET+G+G+LE+LNLK+V EG+E
Sbjct: 196 -IKVIESEDY-GQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDE 249
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 69/88 (78%), Positives = 78/88 (88%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 5 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 64
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL AF T+DQTEICK IL K
Sbjct: 65 GQVAKKEDLISAFGTDDQTEICKQILTK 92
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 55/71 (77%)
Query: 377 ELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVN 436
++L EV ++ER +Q+E F+DIATIV++KC+N ETKRP+TV +IE +K IH+SV
Sbjct: 88 QILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVK 147
Query: 437 VNKNSKQQALE 447
NK++KQQALE
Sbjct: 148 TNKSTKQQALE 158
>pdb|1P9Q|C Chain C, Structure Of A Hypothetical Protein Af0491 From
Archaeoglobus Fulgidus
Length = 256
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 100/203 (49%), Gaps = 4/203 (1%)
Query: 178 LTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDK 237
L +E + +++L VF + KG+ A+ ++L+K F T+D EI + I+++GE+QI+ +
Sbjct: 53 LKEGKEVNFEDLLAAEEVFKDAKKGERASVDELRKIFGTDDVFEIARKIILEGEVQITAE 112
Query: 238 ERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVI 297
+R +E + K I +S I+ T P S IE L++ +++ K+ + Q +++
Sbjct: 113 QRREMLEAKRKQIINFISRNTIDPRTNAPHPPSRIERALEEAKVHIDIFKSVEAQVKDIV 172
Query: 298 PTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWS-GGGLLLICLIDP 356
LK + ++ +M + +++ V EEW G + + I
Sbjct: 173 KALKPILPLKFEEMEIAIKIPP---EHTGRAISALYNFGGVTREEWQRDGSWICVMRIPS 229
Query: 357 GKYREIDELVRTETRGQGTLELL 379
G Y ++ +L+ +G+ ++L
Sbjct: 230 GMYGDLMDLLGKVAKGEALTKVL 252
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 46/88 (52%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
++ + + + I R++K G+ FE+ + E + +++L VF + K
Sbjct: 17 LYFQGHMVSLDKAVIARLRKGGEEFEVLVDPYLARDLKEGKEVNFEDLLAAEEVFKDAKK 76
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
G+ A+ ++L+K F T+D EI + I+++
Sbjct: 77 GERASVDELRKIFGTDDVFEIARKIILE 104
>pdb|1T95|A Chain A, Crystal Structure Of The Shwachman-Bodian-Diamond Syndrome
Protein Orthologue From Archaeoglobus Fulgidus
Length = 240
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 99/204 (48%), Gaps = 4/204 (1%)
Query: 178 LTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDK 237
L +E + +++L VF + KG+ A+ ++L+K F T+D EI + I+++GE+QI+ +
Sbjct: 37 LKEGKEVNFEDLLAAEEVFKDAKKGERASVDELRKIFGTDDVFEIARKIILEGEVQITAE 96
Query: 238 ERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVI 297
+R +E + K I +S I+ T P S IE L++ +++ K+ + Q +++
Sbjct: 97 QRREXLEAKRKQIINFISRNTIDPRTNAPHPPSRIERALEEAKVHIDIFKSVEAQVKDIV 156
Query: 298 PTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWS-GGGLLLICLIDP 356
LK + ++ + + +++ T EEW G + + I
Sbjct: 157 KALKPILPLKFEEXEIAIKIPPEHTGRAISALYNFGGVT---REEWQRDGSWICVXRIPS 213
Query: 357 GKYREIDELVRTETRGQGTLELLN 380
G Y ++ +L+ +G+ ++L
Sbjct: 214 GXYGDLXDLLGKVAKGEALTKVLR 237
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%)
Query: 11 IRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKE 70
+ + I R++K G+ FE+ + E + +++L VF + KG+ A+ +
Sbjct: 8 VSLDKAVIARLRKGGEEFEVLVDPYLARDLKEGKEVNFEDLLAAEEVFKDAKKGERASVD 67
Query: 71 DLKKAFNTEDQTEICKLILM 90
+L+K F T+D EI + I++
Sbjct: 68 ELRKIFGTDDVFEIARKIIL 87
>pdb|2WBM|A Chain A, Crystal Structure Of Mthsbds, The Homologue Of The
Shwachman-Bodian-Diamond Syndrome Protein In The
Euriarchaeon Methanothermobacter Thermautotrophicus
pdb|2WBM|B Chain B, Crystal Structure Of Mthsbds, The Homologue Of The
Shwachman-Bodian-Diamond Syndrome Protein In The
Euriarchaeon Methanothermobacter Thermautotrophicus
Length = 252
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 12/194 (6%)
Query: 181 FREKD----IDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISD 236
FR +D +++VL VF + KG A++E ++K F T D E+ +IL +G +Q++
Sbjct: 51 FRREDSDVSVEDVLAVQEVFRDARKGDKASEEAMRKVFETADPLEVTPVILRRGTIQLTA 110
Query: 237 KERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEV 296
++R IE++ I ++ + IN + P IE +++ V+ K +Q V
Sbjct: 111 EQRRQMIEDKRLKIINKIAREAINPQNGLPHPPKRIEKAMEEARVHVDPFKTVDEQVNIV 170
Query: 297 IPTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDP 356
+ ++ + I+ ++RV +++ + NEEW G + + P
Sbjct: 171 LKAIRTKIPIKFEKVRVAIKIPG---EMAGSAYGVISNFGKITNEEWQNDGSWIAVVEIP 227
Query: 357 GK-----YREIDEL 365
G Y+++ EL
Sbjct: 228 GGLQDSFYQKLSEL 241
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 8 TNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRN-NIEKDIDEVLQTHTVFTNVSKGQA 66
++ + + + I R++ G+RFE+ + +R + + +++VL VF + KG
Sbjct: 19 SHMVSLEDAVIARLESHGERFEVLVDPDLAAEFRREDSDVSVEDVLAVQEVFRDARKGDK 78
Query: 67 ANKEDLKKAFNTEDQTEICKLILMK 91
A++E ++K F T D E+ +IL +
Sbjct: 79 ASEEAMRKVFETADPLEVTPVILRR 103
>pdb|3O3M|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3M|C Chain C, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3N|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3N|C Chain C, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3O|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
(R)-2- Hydroxyisocaproate
Length = 408
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 20/168 (11%)
Query: 34 KNKVISWRNNI-EKDIDEVLQTHTVFT-NVSKGQAANKEDLKKAFNTEDQTEICKLILMK 91
+ + + W ++ +++ EV + ++ N + G AA K L E+C++ K
Sbjct: 28 EGRPVGWSTSVFPQELAEVFDLNVLYPENQAAGVAAKKGSL----------ELCEIAESK 77
Query: 92 DMSK---IFTPTNQIRMTNVAIVRMKKAGKRFEIACYK--NKVISWRNNIEKDID-EVLQ 145
S + TN + N + F + C N+VI W NI +++D ++
Sbjct: 78 GYSIDLCAYARTNFGLLENGGCEALDMPAPDFLLCCNNICNQVIKWYENISRELDIPLIM 137
Query: 146 THTVFTNVSKGQAANKEDLKKAFNTNM--LNISSLTSFREKDIDEVLQ 191
T F N + + + +K F + L I S F K +EV++
Sbjct: 138 IDTTFNNEDEVTQSRIDYIKAQFEEAIKQLEIISGKKFDPKKFEEVMK 185
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 138 KDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNMLNISSL 178
KD + ++ VF N+S+G N++DL +A + + + L
Sbjct: 230 KDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGL 270
>pdb|3QFH|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus
Length = 447
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 153 VSKGQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQA 204
+ G N +DLK F+T+ N+ L FR + +E H V N KG
Sbjct: 129 IDTGVMKNHDDLKNNFSTDSKNLVPLNGFRGTEPEETGDVHDV--NDRKGHG 178
>pdb|3T41|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
pdb|3T41|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
Length = 471
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 153 VSKGQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQA 204
+ G N +DLK F+T+ N+ L FR + +E H V N KG
Sbjct: 153 IDTGVMKNHDDLKNNFSTDSKNLVPLNGFRGTEPEETGDVHDV--NDRKGHG 202
>pdb|4EDP|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of An Abc
Transporter From Clostridium Perfringens Atcc 13124
pdb|4EDP|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of An Abc
Transporter From Clostridium Perfringens Atcc 13124
Length = 351
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 239 RSSQIENQFKD---IATIVSEKCINTETK-RPFTVSMIEAGLKQIHF-SVNVNKNSKQQA 293
+SS + N F + +A + S+ T +K +P +++I ++F ++N+NKNSK +
Sbjct: 218 KSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKNSKNKD 277
Query: 294 L 294
L
Sbjct: 278 L 278
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 391 RSSQIENQFKD---IATIVSEKCINTETK-RPFTVSMIEAGLKQIHF-SVNVNKNSKQQA 445
+SS + N F + +A + S+ T +K +P +++I ++F ++N+NKNSK +
Sbjct: 218 KSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKNSKNKD 277
Query: 446 L 446
L
Sbjct: 278 L 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,566,475
Number of Sequences: 62578
Number of extensions: 427848
Number of successful extensions: 1331
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1292
Number of HSP's gapped (non-prelim): 40
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (25.0 bits)