BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1329
(465 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5D8M6|SBDS_XENLA Ribosome maturation protein SBDS OS=Xenopus laevis GN=sbds PE=2
SV=1
Length = 250
Score = 299 bits (766), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 160/294 (54%), Positives = 196/294 (66%), Gaps = 49/294 (16%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMKK GKRFEIACYKNKV+SWR+ E
Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAE------------------ 44
Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
KD+DEVLQTH+VF NVSKGQ A KEDL KAF
Sbjct: 45 ----------------------------KDLDEVLQTHSVFMNVSKGQGAKKEDLLKAFG 76
Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
TEDQTEICK IL KGELQ+S+KERS+Q+E F+DIATIV++KC+N ETKRP+TV++IE
Sbjct: 77 TEDQTEICKQILSKGELQVSEKERSTQLEQMFRDIATIVADKCVNPETKRPYTVNLIERA 136
Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCA 335
+K IH+SV K++KQQAL+VI LK+ M IERA MR+R V A K K K +
Sbjct: 137 MKDIHYSVKATKSTKQQALDVIKQLKETMQIERAHMRLRFIVPAKDGKKLKEKLKPLIKH 196
Query: 336 TSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEE 389
EN + L ++CLIDPG +REIDEL+R ET+G+GTLE+L+LK+V EG+E
Sbjct: 197 IESENFDQE---LEIVCLIDPGCFREIDELIRCETKGKGTLEVLSLKDVEEGDE 247
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/88 (81%), Positives = 78/88 (88%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMKK GKRFEIACYKNKV+SWR+ EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFMNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL KAF TEDQTEICK IL K
Sbjct: 63 GQGAKKEDLLKAFGTEDQTEICKQILSK 90
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 57/71 (80%)
Query: 377 ELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVN 436
++L+ E+ E+ERS+Q+E F+DIATIV++KC+N ETKRP+TV++IE +K IH+SV
Sbjct: 86 QILSKGELQVSEKERSTQLEQMFRDIATIVADKCVNPETKRPYTVNLIERAMKDIHYSVK 145
Query: 437 VNKNSKQQALE 447
K++KQQAL+
Sbjct: 146 ATKSTKQQALD 156
>sp|Q5ZIY4|SBDS_CHICK Ribosome maturation protein SBDS OS=Gallus gallus GN=SBDS PE=2 SV=1
Length = 250
Score = 299 bits (766), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 164/294 (55%), Positives = 204/294 (69%), Gaps = 49/294 (16%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VR ++AGKRFEIACY+NKV+ WR
Sbjct: 3 IFTPTNQIRLTNVAVVRARRAGKRFEIACYRNKVMGWR---------------------- 40
Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
S EKDIDEVLQTHTVF NVSKGQ A KEDL +AF
Sbjct: 41 ------------------------SGAEKDIDEVLQTHTVFVNVSKGQVAKKEDLVRAFG 76
Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
T+DQTEICK+IL KGELQ+SDKER +Q+E F+DIATIV++KC+N ETKRP+TV +IE
Sbjct: 77 TDDQTEICKVILSKGELQVSDKERQTQLEQMFRDIATIVADKCVNPETKRPYTVILIERA 136
Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCA 335
+K IH+SV NK++KQQALEVI LK+ M IERA MR+R + VK+ KKLKEKL
Sbjct: 137 MKDIHYSVKPNKSTKQQALEVIRQLKETMQIERAHMRLRFILP--VKEGKKLKEKLKPLI 194
Query: 336 TSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEE 389
+ENE++ L ++CLIDPG +REIDEL+R+ET+G+GTLE+L+LK+V EG+E
Sbjct: 195 KVIENEDFH-DQLEIVCLIDPGCFREIDELIRSETKGKGTLEVLSLKDVEEGDE 247
Score = 152 bits (383), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 78/88 (88%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VR ++AGKRFEIACY+NKV+ WR+ EKDIDEVLQTHTVF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRARRAGKRFEIACYRNKVMGWRSGAEKDIDEVLQTHTVFVNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL +AF T+DQTEICK+IL K
Sbjct: 63 GQVAKKEDLVRAFGTDDQTEICKVILSK 90
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 55/70 (78%)
Query: 378 LLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNV 437
+L+ E+ ++ER +Q+E F+DIATIV++KC+N ETKRP+TV +IE +K IH+SV
Sbjct: 87 ILSKGELQVSDKERQTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKP 146
Query: 438 NKNSKQQALE 447
NK++KQQALE
Sbjct: 147 NKSTKQQALE 156
>sp|Q5RAZ2|SBDS_PONAB Ribosome maturation protein SBDS OS=Pongo abelii GN=SBDS PE=2 SV=1
Length = 250
Score = 298 bits (762), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 161/294 (54%), Positives = 203/294 (69%), Gaps = 49/294 (16%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +E
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVE------------------ 44
Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
KD+DEVLQTH+VF NVSKGQ A KEDL AF
Sbjct: 45 ----------------------------KDLDEVLQTHSVFVNVSKGQVAKKEDLISAFG 76
Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
T+DQTEICK IL KGE+Q+SDKER +Q+E F+DIATIV++KC+N ETKRP+TV +IE
Sbjct: 77 TDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERA 136
Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCA 335
+K IH+SV NK++KQQALEVI LK+ M IERA MR+R + V + KKLKEKL
Sbjct: 137 MKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILP--VNEGKKLKEKLKPLI 194
Query: 336 TSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEE 389
+E+E++ G L ++CLIDPG +REIDEL++ ET+G+G+LE+LNLK+V EG+E
Sbjct: 195 KVIESEDY-GQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDE 247
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/88 (78%), Positives = 78/88 (88%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL AF T+DQTEICK IL K
Sbjct: 63 GQVAKKEDLISAFGTDDQTEICKQILTK 90
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 55/71 (77%)
Query: 377 ELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVN 436
++L EV ++ER +Q+E F+DIATIV++KC+N ETKRP+TV +IE +K IH+SV
Sbjct: 86 QILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVK 145
Query: 437 VNKNSKQQALE 447
NK++KQQALE
Sbjct: 146 TNKSTKQQALE 156
>sp|Q9Y3A5|SBDS_HUMAN Ribosome maturation protein SBDS OS=Homo sapiens GN=SBDS PE=1 SV=4
Length = 250
Score = 298 bits (762), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 161/294 (54%), Positives = 203/294 (69%), Gaps = 49/294 (16%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +E
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVE------------------ 44
Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
KD+DEVLQTH+VF NVSKGQ A KEDL AF
Sbjct: 45 ----------------------------KDLDEVLQTHSVFVNVSKGQVAKKEDLISAFG 76
Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
T+DQTEICK IL KGE+Q+SDKER +Q+E F+DIATIV++KC+N ETKRP+TV +IE
Sbjct: 77 TDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERA 136
Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCA 335
+K IH+SV NK++KQQALEVI LK+ M IERA MR+R + V + KKLKEKL
Sbjct: 137 MKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILP--VNEGKKLKEKLKPLI 194
Query: 336 TSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEE 389
+E+E++ G L ++CLIDPG +REIDEL++ ET+G+G+LE+LNLK+V EG+E
Sbjct: 195 KVIESEDY-GQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDE 247
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/88 (78%), Positives = 78/88 (88%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL AF T+DQTEICK IL K
Sbjct: 63 GQVAKKEDLISAFGTDDQTEICKQILTK 90
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 55/71 (77%)
Query: 377 ELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVN 436
++L EV ++ER +Q+E F+DIATIV++KC+N ETKRP+TV +IE +K IH+SV
Sbjct: 86 QILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVK 145
Query: 437 VNKNSKQQALE 447
NK++KQQALE
Sbjct: 146 TNKSTKQQALE 156
>sp|Q6DIT8|SBDS_XENTR Ribosome maturation protein SBDS OS=Xenopus tropicalis GN=sbds PE=2
SV=1
Length = 250
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 158/294 (53%), Positives = 196/294 (66%), Gaps = 49/294 (16%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMKK GKRFEIACYKNKV+SWR+ E
Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAE------------------ 44
Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
KD+DEVLQTH+VF NVSKGQ A KEDL K+F
Sbjct: 45 ----------------------------KDLDEVLQTHSVFMNVSKGQVAKKEDLLKSFG 76
Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
TED TEICK IL KGELQ+S+KERS+Q+E F+DIATIV++KC+N ETKRP+TV++IE
Sbjct: 77 TEDPTEICKQILSKGELQVSEKERSTQLEQMFRDIATIVADKCVNPETKRPYTVNLIERA 136
Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCA 335
+K IH+SV K++KQQAL+VI LK+ M IERA MR+R + A K K K +
Sbjct: 137 MKDIHYSVKATKSTKQQALDVIKQLKETMQIERAHMRLRFILPAKDGKKLKEKLKPLIKH 196
Query: 336 TSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEE 389
T EN + L ++CLIDPG +REIDEL+R ET+G+GTLE+L+LK+V EG+E
Sbjct: 197 TESENFDQE---LEIVCLIDPGCFREIDELIRCETKGKGTLEVLSLKDVEEGDE 247
Score = 152 bits (383), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 70/88 (79%), Positives = 77/88 (87%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMKK GKRFEIACYKNKV+SWR+ EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFMNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL K+F TED TEICK IL K
Sbjct: 63 GQVAKKEDLLKSFGTEDPTEICKQILSK 90
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 57/71 (80%)
Query: 377 ELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVN 436
++L+ E+ E+ERS+Q+E F+DIATIV++KC+N ETKRP+TV++IE +K IH+SV
Sbjct: 86 QILSKGELQVSEKERSTQLEQMFRDIATIVADKCVNPETKRPYTVNLIERAMKDIHYSVK 145
Query: 437 VNKNSKQQALE 447
K++KQQAL+
Sbjct: 146 ATKSTKQQALD 156
>sp|Q3SWZ6|SBDS_BOVIN Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1
Length = 250
Score = 295 bits (755), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 159/294 (54%), Positives = 203/294 (69%), Gaps = 49/294 (16%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +E
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVE------------------ 44
Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
KD+DEVLQTH+VF NVSKGQ A KEDL AF
Sbjct: 45 ----------------------------KDLDEVLQTHSVFVNVSKGQVAKKEDLISAFG 76
Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
T+DQTEICK IL KGE+Q+SDKER +Q+E F+DIATIV++KC+N ETKRP+TV +IE
Sbjct: 77 TDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERA 136
Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCA 335
+K IH+SV NK++KQQALEVI LK+ M IERA MR+R + V + KKLKEKL
Sbjct: 137 MKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILP--VNEGKKLKEKLKPLI 194
Query: 336 TSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEE 389
+E+E++ G L ++CLIDPG +RE+DEL++ ET+G+G+LE+L+LK+V EG+E
Sbjct: 195 KVIESEDY-GQQLEIVCLIDPGCFREVDELIKKETKGKGSLEVLSLKDVEEGDE 247
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/88 (78%), Positives = 78/88 (88%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL AF T+DQTEICK IL K
Sbjct: 63 GQVAKKEDLISAFGTDDQTEICKQILTK 90
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 55/71 (77%)
Query: 377 ELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVN 436
++L EV ++ER +Q+E F+DIATIV++KC+N ETKRP+TV +IE +K IH+SV
Sbjct: 86 QILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVK 145
Query: 437 VNKNSKQQALE 447
NK++KQQALE
Sbjct: 146 PNKSTKQQALE 156
>sp|Q5RK30|SBDS_RAT Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2
SV=1
Length = 250
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 160/294 (54%), Positives = 202/294 (68%), Gaps = 49/294 (16%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMK+ GKRFEIACYKNKV+ WR+ +E
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVE------------------ 44
Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
KD+DEVLQTH+VF NVSKGQ A KEDL AF
Sbjct: 45 ----------------------------KDLDEVLQTHSVFVNVSKGQVAKKEDLISAFG 76
Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
T+DQTEICK IL KGE+Q+SDKER +Q+E F+DIATIV++KC+N ETKRP+TV +IE
Sbjct: 77 TDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERA 136
Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCA 335
+K IH+SV NK++KQQALEVI LK+ M IERA MR+R + V + KKLKEKL
Sbjct: 137 MKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFLLP--VNEGKKLKEKLKPLM 194
Query: 336 TSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEE 389
VE+E++S L ++CLIDPG +REIDEL++ ET+G+G+LE+L+LK+V EG+E
Sbjct: 195 KVVESEDYS-QQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLSLKDVEEGDE 247
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMK+ GKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL AF T+DQTEICK IL K
Sbjct: 63 GQVAKKEDLISAFGTDDQTEICKQILTK 90
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 55/71 (77%)
Query: 377 ELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVN 436
++L EV ++ER +Q+E F+DIATIV++KC+N ETKRP+TV +IE +K IH+SV
Sbjct: 86 QILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVK 145
Query: 437 VNKNSKQQALE 447
NK++KQQALE
Sbjct: 146 PNKSTKQQALE 156
>sp|P70122|SBDS_MOUSE Ribosome maturation protein SBDS OS=Mus musculus GN=Sbds PE=1 SV=4
Length = 250
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 160/294 (54%), Positives = 202/294 (68%), Gaps = 49/294 (16%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMK+ GKRFEIACYKNKV+ WR+ +E
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVE------------------ 44
Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
KD+DEVLQTH+VF NVSKGQ A KEDL AF
Sbjct: 45 ----------------------------KDLDEVLQTHSVFVNVSKGQVAKKEDLISAFG 76
Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
T+DQTEICK IL KGE+Q+SDKER +Q+E F+DIATIV++KC+N ETKRP+TV +IE
Sbjct: 77 TDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERA 136
Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCA 335
+K IH+SV NK++KQQALEVI LK+ M IERA MR+R + V + KKLKEKL
Sbjct: 137 MKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILP--VNEGKKLKEKLKPLM 194
Query: 336 TSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEE 389
VE+E++S L ++CLIDPG +REIDEL++ ET+G+G+LE+L+LK+V EG+E
Sbjct: 195 KVVESEDYS-QQLEIVCLIDPGCFREIDELIKKETKGRGSLEVLSLKDVEEGDE 247
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMK+ GKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL AF T+DQTEICK IL K
Sbjct: 63 GQVAKKEDLISAFGTDDQTEICKQILTK 90
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 55/71 (77%)
Query: 377 ELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVN 436
++L EV ++ER +Q+E F+DIATIV++KC+N ETKRP+TV +IE +K IH+SV
Sbjct: 86 QILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVK 145
Query: 437 VNKNSKQQALE 447
NK++KQQALE
Sbjct: 146 PNKSTKQQALE 156
>sp|Q23202|SBDS_CAEEL Ribosome maturation protein SBDS OS=Caenorhabditis elegans
GN=sbds-1 PE=3 SV=2
Length = 253
Score = 266 bits (679), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 137/297 (46%), Positives = 188/297 (63%), Gaps = 49/297 (16%)
Query: 93 MSK-IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFT 151
MSK I TPTNQ +TNVA+VRMKK GKRFEIACYKNKV++WRN
Sbjct: 1 MSKNIKTPTNQKVLTNVAVVRMKKTGKRFEIACYKNKVVNWRNK---------------- 44
Query: 152 NVSKGQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLK 211
EKDIDEVLQTHTVF+NVSKGQ + KE+L
Sbjct: 45 ------------------------------SEKDIDEVLQTHTVFSNVSKGQLSKKEELI 74
Query: 212 KAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSM 271
AF EDQ EICK+IL KG+LQ+S+KER + + K+++ +++ +N ETKRP S+
Sbjct: 75 AAFGIEDQLEICKIILDKGDLQVSEKERQAASDQSLKEVSQLIASMVVNPETKRPVPPSV 134
Query: 272 IEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKL 331
I+ L+++HFS+ N++SKQQAL+ IP L++ + IERA+M++RV + K+ K + KL
Sbjct: 135 IDKALQEMHFSLKPNRSSKQQALDAIPKLRETLKIERAKMKIRVAIPT--KEAKSVHTKL 192
Query: 332 VKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGE 388
+ VE ++W G L ++ LI+PG +R +D+LVR ET+G G LE+L+LK+V EGE
Sbjct: 193 KTLFSDVEVDDWQDGSLEMVGLIEPGSFRALDDLVRNETKGHGRLEILSLKDVVEGE 249
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/92 (75%), Positives = 77/92 (83%), Gaps = 1/92 (1%)
Query: 1 MSK-IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFT 59
MSK I TPTNQ +TNVA+VRMKK GKRFEIACYKNKV++WRN EKDIDEVLQTHTVF+
Sbjct: 1 MSKNIKTPTNQKVLTNVAVVRMKKTGKRFEIACYKNKVVNWRNKSEKDIDEVLQTHTVFS 60
Query: 60 NVSKGQAANKEDLKKAFNTEDQTEICKLILMK 91
NVSKGQ + KE+L AF EDQ EICK+IL K
Sbjct: 61 NVSKGQLSKKEELIAAFGIEDQLEICKIILDK 92
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 47/70 (67%)
Query: 378 LLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNV 437
+L+ ++ E+ER + + K+++ +++ +N ETKRP S+I+ L+++HFS+
Sbjct: 89 ILDKGDLQVSEKERQAASDQSLKEVSQLIASMVVNPETKRPVPPSVIDKALQEMHFSLKP 148
Query: 438 NKNSKQQALE 447
N++SKQQAL+
Sbjct: 149 NRSSKQQALD 158
>sp|Q86KZ5|SBDS_DICDI Ribosome maturation protein SBDS OS=Dictyostelium discoideum
GN=sbds PE=3 SV=2
Length = 274
Score = 249 bits (636), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 129/294 (43%), Positives = 183/294 (62%), Gaps = 49/294 (16%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTP N +TN+ +VR KK +FEIACY +KV S+R+ I
Sbjct: 3 IFTPVNNKTLTNIVVVRYKKGAAKFEIACYPSKVQSYRSKI------------------- 43
Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
EKD++EV+Q H +FTNVSKG A K++L KAF
Sbjct: 44 ---------------------------EKDLNEVIQIHRIFTNVSKGIIAKKDELIKAFG 76
Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
T+++ EI LIL KGELQ+S KER +Q E FKDIATIV+EKC+NTET+RP VS+IE
Sbjct: 77 TDNEQEIILLILEKGELQVSSKERDNQSEQTFKDIATIVAEKCVNTETQRPIPVSIIEKA 136
Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKL-KEKLVKC 334
+K +H+S++ K+SKQQ+LEVI + + I+RAQMR+ + + K+ K L ++KL+
Sbjct: 137 MKDVHYSIHPTKSSKQQSLEVIKQISSVIPIQRAQMRLNITIPT--KESKTLNRDKLMVL 194
Query: 335 ATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGE 388
+ +E E+ GGGL ++CL+DPG YR+IDEL++ ET+G+G ++++NL EGE
Sbjct: 195 VSKIEEEDRDGGGLSIVCLVDPGSYRKIDELIKQETKGKGFIDIINLAVAKEGE 248
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 65/88 (73%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTP N +TN+ +VR KK +FEIACY +KV S+R+ IEKD++EV+Q H +FTNVSK
Sbjct: 3 IFTPVNNKTLTNIVVVRYKKGAAKFEIACYPSKVQSYRSKIEKDLNEVIQIHRIFTNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
G A K++L KAF T+++ EI LIL K
Sbjct: 63 GIIAKKDELIKAFGTDNEQEIILLILEK 90
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 61/88 (69%), Gaps = 3/88 (3%)
Query: 363 DELVR---TETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPF 419
DEL++ T+ + L +L E+ +ER +Q E FKDIATIV+EKC+NTET+RP
Sbjct: 69 DELIKAFGTDNEQEIILLILEKGELQVSSKERDNQSEQTFKDIATIVAEKCVNTETQRPI 128
Query: 420 TVSMIEAGLKQIHFSVNVNKNSKQQALE 447
VS+IE +K +H+S++ K+SKQQ+LE
Sbjct: 129 PVSIIEKAMKDVHYSIHPTKSSKQQSLE 156
>sp|O14179|SDO1_SCHPO Ribosome maturation protein sdo1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sdo1 PE=3 SV=1
Length = 246
Score = 195 bits (495), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 160/290 (55%), Gaps = 51/290 (17%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
I P QIR+TNV++V+ KK GKRFE+ACYKNKV WRN IE
Sbjct: 3 ISQPVGQIRLTNVSVVKYKKGGKRFEVACYKNKVTEWRNKIET----------------- 45
Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
D+DEVLQ H VF NVSKG A+++DLKKAF
Sbjct: 46 -----------------------------DLDEVLQIHNVFNNVSKGHVASRQDLKKAFG 76
Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
T+D +I IL KG+ Q+ +KER Q+ + ++DI + V+ C++ +KRP+ S+IE
Sbjct: 77 TDDIDKIILEILQKGDFQVGEKERHHQMSSTYRDIVSHVTAMCMDPNSKRPYPASIIEKA 136
Query: 276 LKQIHFSVNVNKNSKQQALEVIPTL--KQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVK 333
L FSV+ +K +K QALE I L K + I RA+MR+R+ V VK K L+E+L
Sbjct: 137 LSDCGFSVSTSKTAKSQALEAIKKLQEKNEIPIVRARMRIRIVVD--VKQGKALRERLRS 194
Query: 334 CATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKE 383
A +E E I L+ PG Y+ IDELVR ET+ +G +++L++ E
Sbjct: 195 LADEIEEEN-IDDEYECIALVIPGNYKLIDELVRNETKNRGMVQVLDMSE 243
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 66/88 (75%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
I P QIR+TNV++V+ KK GKRFE+ACYKNKV WRN IE D+DEVLQ H VF NVSK
Sbjct: 3 ISQPVGQIRLTNVSVVKYKKGGKRFEVACYKNKVTEWRNKIETDLDEVLQIHNVFNNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
G A+++DLKKAF T+D +I IL K
Sbjct: 63 GHVASRQDLKKAFGTDDIDKIILEILQK 90
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 376 LELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSV 435
LE+L + GE+ER Q+ + ++DI + V+ C++ +KRP+ S+IE L FSV
Sbjct: 85 LEILQKGDFQVGEKERHHQMSSTYRDIVSHVTAMCMDPNSKRPYPASIIEKALSDCGFSV 144
Query: 436 NVNKNSKQQALE 447
+ +K +K QALE
Sbjct: 145 STSKTAKSQALE 156
>sp|Q07953|SDO1_YEAST Ribosome maturation protein SDO1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SDO1 PE=1 SV=1
Length = 250
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 157/292 (53%), Gaps = 65/292 (22%)
Query: 99 PTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQA 158
P+ QI++TNV++VR+KKA KRFE+ACY+NKV +R IE
Sbjct: 6 PSGQIKLTNVSLVRLKKARKRFEVACYQNKVQDYRKGIE--------------------- 44
Query: 159 ANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTED 218
KD+DEVLQ H VF NVSKG ANKEDL+K F T +
Sbjct: 45 -------------------------KDLDEVLQIHQVFMNVSKGLVANKEDLQKCFGTTN 79
Query: 219 QTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQ 278
++ + I+ KGE+Q+S+KER + ++ TIVS KCIN +K+ + +MI L++
Sbjct: 80 VDDVIEEIMHKGEIQLSEKERQLMLNKVNNEMLTIVSAKCINPVSKKRYPPTMIHKALQE 139
Query: 279 IHFSVNVNKNSKQQALEVIPTL--KQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKC-- 334
+ FS +NK +K QALE I L KQ + I RA+M+V+V +S + +L EK+ K
Sbjct: 140 LKFSPVINKPAKLQALEAIKLLVSKQIIPIVRAKMKVKVAISEPSRQ-PELIEKISKLIA 198
Query: 335 -----ATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNL 381
+T E + W+ G LIDP YR++ T +GT+++L++
Sbjct: 199 SSPGESTKPELDPWTCTG-----LIDPVNYRDL----MTLCDKKGTVQVLDM 241
Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 66/85 (77%)
Query: 7 PTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQA 66
P+ QI++TNV++VR+KKA KRFE+ACY+NKV +R IEKD+DEVLQ H VF NVSKG
Sbjct: 6 PSGQIKLTNVSLVRLKKARKRFEVACYQNKVQDYRKGIEKDLDEVLQIHQVFMNVSKGLV 65
Query: 67 ANKEDLKKAFNTEDQTEICKLILMK 91
ANKEDL+K F T + ++ + I+ K
Sbjct: 66 ANKEDLQKCFGTTNVDDVIEEIMHK 90
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 377 ELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVN 436
E+++ E+ E+ER + ++ TIVS KCIN +K+ + +MI L+++ FS
Sbjct: 86 EIMHKGEIQLSEKERQLMLNKVNNEMLTIVSAKCINPVSKKRYPPTMIHKALQELKFSPV 145
Query: 437 VNKNSKQQALE 447
+NK +K QALE
Sbjct: 146 INKPAKLQALE 156
>sp|Q9YCU5|SDO1_AERPE Ribosome maturation protein SDO1 homolog OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=APE_1167.1 PE=3 SV=2
Length = 233
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 88/144 (61%), Gaps = 5/144 (3%)
Query: 180 SFREK-----DIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQI 234
+FR K D+++VL T T++ +V KG A+ E++KKAF T D + + IL +GE+Q+
Sbjct: 28 AFRYKEKGDVDLEDVLWTDTIYRDVRKGLKASPEEVKKAFGTSDPRRVAEKILKEGEIQL 87
Query: 235 SDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQAL 294
++++R +E + + I + ++ I+ T RP + IEA L+++ F +N+ ++++ QA+
Sbjct: 88 TEEQRRRLLEAKRRQIISYIARNAIDPTTGRPIPEARIEAALEEVRFPINLWRDAESQAV 147
Query: 295 EVIPTLKQCMSIERAQMRVRVEVS 318
E + + + M I A+ + V++
Sbjct: 148 EAVRLIARVMPIRLARALLEVKIP 171
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 21 MKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTED 80
M+ GKRFEI ++ + D+++VL T T++ +V KG A+ E++KKAF T D
Sbjct: 12 MEVRGKRFEILVRPELAFRYKEKGDVDLEDVLWTDTIYRDVRKGLKASPEEVKKAFGTSD 71
Query: 81 QTEICKLIL 89
+ + IL
Sbjct: 72 PRRVAEKIL 80
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%)
Query: 378 LLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNV 437
+L E+ EE+R +E + + I + ++ I+ T RP + IEA L+++ F +N+
Sbjct: 79 ILKEGEIQLTEEQRRRLLEAKRRQIISYIARNAIDPTTGRPIPEARIEAALEEVRFPINL 138
Query: 438 NKNSKQQALE 447
++++ QA+E
Sbjct: 139 WRDAESQAVE 148
>sp|Q58011|SDO1_METJA Ribosome maturation protein SDO1 homolog OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0592 PE=3 SV=1
Length = 240
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 94/174 (54%), Gaps = 7/174 (4%)
Query: 185 DIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIE 244
D DE+L VF + SKG+ A +E L K F T D EI K I++KG++Q++ K+R E
Sbjct: 43 DFDELLAIEVVFRDASKGEKAPEELLSKIFGTTDVKEIAKKIILKGQVQLTAKQREEIRE 102
Query: 245 NQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCM 304
+ + I TI+S IN +T P IE ++++ ++++ K++++Q E++ LK+ +
Sbjct: 103 QKKRQIITIISRNTINPQTDTPHPPHRIEKAMEELRINIDIYKSAEEQVPEIVKKLKKVL 162
Query: 305 SI--ERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDP 356
I E+ + V++ K L + +V+ EEW G L++ + P
Sbjct: 163 PIRFEKRDIAVKIPAEFASKAYNALYQ-----FGAVKQEEWQPDGSLIVLIEIP 211
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 11 IRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKE 70
+ + I R G++FEI + D DE+L VF + SKG+ A +E
Sbjct: 7 VSLEEAVIARYTSHGEKFEILVDPYLAAKLKEGQNVDFDELLAIEVVFRDASKGEKAPEE 66
Query: 71 DLKKAFNTEDQTEICKLILMK 91
L K F T D EI K I++K
Sbjct: 67 LLSKIFGTTDVKEIAKKIILK 87
>sp|Q9V121|SDO1_PYRAB Ribosome maturation protein SDO1 homolog OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB06080 PE=3 SV=1
Length = 236
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 100/180 (55%), Gaps = 3/180 (1%)
Query: 182 REKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSS 241
+E I+E+L T VF + KG A++++++K F T D E+ K+IL KGE+Q++ ++R
Sbjct: 36 KEVPIEEILATPYVFKDAHKGDKASEKEMEKIFGTSDPYEVAKIILRKGEVQLTAQQRRE 95
Query: 242 QIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLK 301
+E + + IATI+ ++ T P V I ++++ V++ K+++ Q +VI ++
Sbjct: 96 MLEEKKRQIATIIHRHAVDPRTGYPHPVDRILRAMEEVGVRVDIFKDAEAQVQDVIKAIR 155
Query: 302 QCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYRE 361
+ + + R +M+V + V + V + ++ K ++ EEW+ G L + PG E
Sbjct: 156 RILPL-RIEMKV-IAVKIPSEYVGRAYGEVRKFG-RIKKEEWASDGSWLFLIEIPGGVEE 212
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 11 IRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKE 70
I + I R+K G+ FEI ++ E I+E+L T VF + KG A+++
Sbjct: 3 ISVDKAVIARLKVHGETFEILVDPYLARDFKEGKEVPIEEILATPYVFKDAHKGDKASEK 62
Query: 71 DLKKAFNTEDQTEICKLILMK 91
+++K F T D E+ K+IL K
Sbjct: 63 EMEKIFGTSDPYEVAKIILRK 83
>sp|O59220|SDO1_PYRHO Ribosome maturation protein SDO1 homolog OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1552 PE=3 SV=1
Length = 236
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 95/176 (53%), Gaps = 3/176 (1%)
Query: 186 IDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIEN 245
I+E+L T VF + KG A++++++K F T D E+ K+IL KGE+Q++ ++R +E
Sbjct: 40 IEEILATPYVFKDAHKGDKASEKEMEKIFGTSDPYEVAKIILKKGEVQLTAQQRREMLEE 99
Query: 246 QFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMS 305
+ + IATI+ + ++ T P V I ++++ V++ K+++ Q +VI L++ +
Sbjct: 100 KKRQIATIIHKHAVDPRTGYPHPVDRILRAMEEVGVRVDIFKDAEAQVQDVIKALRRVLP 159
Query: 306 IERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYRE 361
+ R +M+V G + E V+ ++ EEW G + + PG E
Sbjct: 160 L-RIEMKVIAVKIPGEYVGRSYGE--VRKFGRIKKEEWGSDGSWMFLIEIPGGVEE 212
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 11 IRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKE 70
I + I R+K G+ FEI ++ I+E+L T VF + KG A+++
Sbjct: 3 ISVDKAVIARLKIQGETFEILVDPYLARDFKEGKNVPIEEILATPYVFKDAHKGDKASEK 62
Query: 71 DLKKAFNTEDQTEICKLILMK 91
+++K F T D E+ K+IL K
Sbjct: 63 EMEKIFGTSDPYEVAKIILKK 83
>sp|Q8SUL0|SDO1_ENCCU Ribosome maturation protein SDO1 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=SDO1 PE=1 SV=1
Length = 223
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 53/231 (22%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
+FTP NQ ++ NV+IV +KK G+R+E+A Y NK+ +RN + + E+LQT T++ +VSK
Sbjct: 1 MFTPLNQKKLVNVSIVTLKKFGRRYELAVYPNKLYEYRNGMRTPLSEILQTDTIYRSVSK 60
Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
G+ A R+ D+D +TH
Sbjct: 61 GEIA----------------------RQGDLDLFCRTH---------------------- 76
Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
EI + IL G Q S+ R + E ++I I+ K T R + + +
Sbjct: 77 ----EEIVREILDCGYEQKSEATRVYEQEKTEREIVQILRNKV--TRGGRHLSEASLREA 130
Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKK 326
+ ++H ++ V NSK+Q+ E++ L++ M +R +RV VE+S V + K
Sbjct: 131 IGKVH-NIYVG-NSKKQSQEILSKLEK-MGFDRVGVRVSVEMSDKVAEFVK 178
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 50/69 (72%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
+FTP NQ ++ NV+IV +KK G+R+E+A Y NK+ +RN + + E+LQT T++ +VSK
Sbjct: 1 MFTPLNQKKLVNVSIVTLKKFGRRYELAVYPNKLYEYRNGMRTPLSEILQTDTIYRSVSK 60
Query: 64 GQAANKEDL 72
G+ A + DL
Sbjct: 61 GEIARQGDL 69
>sp|O29759|SDO1_ARCFU Ribosome maturation protein SDO1 homolog OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0491 PE=1 SV=1
Length = 234
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 103/204 (50%), Gaps = 4/204 (1%)
Query: 178 LTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDK 237
L +E + +++L VF + KG+ A+ ++L+K F T+D EI + I+++GE+QI+ +
Sbjct: 31 LKEGKEVNFEDLLAAEEVFKDAKKGERASVDELRKIFGTDDVFEIARKIILEGEVQITAE 90
Query: 238 ERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVI 297
+R +E + K I +S I+ T P S IE L++ +++ K+ + Q +++
Sbjct: 91 QRREMLEAKRKQIINFISRNTIDPRTNAPHPPSRIERALEEAKVHIDIFKSVEAQVKDIV 150
Query: 298 PTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWS-GGGLLLICLIDP 356
LK + ++ +M + +++ + + L V EEW G + + I
Sbjct: 151 KALKPILPLKFEEMEIAIKIPP--EHTGRAISALYNFG-GVTREEWQRDGSWICVMRIPS 207
Query: 357 GKYREIDELVRTETRGQGTLELLN 380
G Y ++ +L+ +G+ ++L
Sbjct: 208 GMYGDLMDLLGKVAKGEALTKVLR 231
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%)
Query: 11 IRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKE 70
+ + I R++K G+ FE+ + E + +++L VF + KG+ A+ +
Sbjct: 2 VSLDKAVIARLRKGGEEFEVLVDPYLARDLKEGKEVNFEDLLAAEEVFKDAKKGERASVD 61
Query: 71 DLKKAFNTEDQTEICKLILMK 91
+L+K F T+D EI + I+++
Sbjct: 62 ELRKIFGTDDVFEIARKIILE 82
>sp|O26781|SDO1_METTH Ribosome maturation protein SDO1 homolog OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_685 PE=1 SV=1
Length = 232
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 12/194 (6%)
Query: 181 FREKD----IDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISD 236
FR +D +++VL VF + KG A++E ++K F T D E+ +IL +G +Q++
Sbjct: 31 FRREDSDVSVEDVLAVQEVFRDARKGDKASEEAMRKVFETADPLEVTPVILRRGTIQLTA 90
Query: 237 KERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEV 296
++R IE++ I ++ + IN + P IE +++ V+ K +Q V
Sbjct: 91 EQRRQMIEDKRLKIINKIAREAINPQNGLPHPPKRIEKAMEEARVHVDPFKTVDEQVNIV 150
Query: 297 IPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDP 356
+ ++ + I+ ++RV +++ + ++ + NEEW G + + P
Sbjct: 151 LKAIRTKIPIKFEKVRVAIKIPG---ERAGSAYGVISNFGKITNEEWQNDGSWIAVVEIP 207
Query: 357 GK-----YREIDEL 365
G Y+++ EL
Sbjct: 208 GGLQDSFYQKLSEL 221
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 11 IRMTNVAIVRMKKAGKRFEIACYKNKVISWRN-NIEKDIDEVLQTHTVFTNVSKGQAANK 69
+ + + I R++ G+RFE+ + +R + + +++VL VF + KG A++
Sbjct: 2 VSLEDAVIARLESHGERFEVLVDPDLAAEFRREDSDVSVEDVLAVQEVFRDARKGDKASE 61
Query: 70 EDLKKAFNTEDQTEICKLILMK 91
E ++K F T D E+ +IL +
Sbjct: 62 EAMRKVFETADPLEVTPVILRR 83
>sp|P0C7L7|YUM14_USTMA Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=UM04112 PE=3 SV=1
Length = 1567
Score = 35.8 bits (81), Expect = 0.80, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 15/99 (15%)
Query: 299 TLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSG------GGLLLIC 352
T K S+ R+ R+ E+ V V+ + E+ ENEE SG GG +L+
Sbjct: 981 TCKAVESLSRSGGRISYELLGAV--VRYVVER-------AENEELSGAADGDVGGAILVF 1031
Query: 353 LIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEER 391
G+ R+ + + T RGQ +E+L L +E+R
Sbjct: 1032 CPGVGEIRQAIDAITTSVRGQSKVEILPLHANLSADEQR 1070
>sp|Q895L2|RS2_CLOTE 30S ribosomal protein S2 OS=Clostridium tetani (strain
Massachusetts / E88) GN=rpsB PE=3 SV=1
Length = 233
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 271 MIEAGLKQIHFSVNVNKNSKQQA---------LEVIPTLKQCMSIERAQMRVRVEVSAGV 321
++EAG +HF + + + A + +I K +E+A +R EV+A
Sbjct: 9 LLEAG---VHFGHQTRRWNPKMAPYIFTERNGIYIIDLQKTVKKVEQAYNFIR-EVAAEG 64
Query: 322 KDV----------KKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETR 371
KDV + ++E+ V+C N W GG L I G+ R ++EL + E
Sbjct: 65 KDVIFVGTKKQAQEAIQEEAVRCDMHFVNNRWLGGMLTNFSTIK-GRIRTLEELEQMEQ- 122
Query: 372 GQGTLELLNLKEV 384
GT E+L KEV
Sbjct: 123 -DGTFEVLPKKEV 134
>sp|Q6ZPR5|NSMA3_MOUSE Sphingomyelin phosphodiesterase 4 OS=Mus musculus GN=Smpd4 PE=2
SV=2
Length = 823
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 28/169 (16%)
Query: 223 CKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIH-- 280
CK M G + R +Q+ Q K A +S++ + + T R F +S + GL +
Sbjct: 536 CKYTPMFGPEIRTLVLRLAQLITQAKQTAKSISDQYVESPTGRSF-LSWLTFGLTDTNSC 594
Query: 281 FSVN----VNKNS-------KQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKE 329
+ N + ++S ++ALE L+Q + AQ+ ++ ++ G + K+
Sbjct: 595 YPANDLDEIGQDSIRKTDEYLEKALEY---LRQIFRLSEAQL-AQLTLALGSARDENGKQ 650
Query: 330 KLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378
+L C + EE GL+L L G+Y+ I+ L R E QG LEL
Sbjct: 651 QLPDC---IVGEE----GLILTPL---GRYQIINGLRRFEIEYQGDLEL 689
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,270,755
Number of Sequences: 539616
Number of extensions: 6086298
Number of successful extensions: 15768
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 15551
Number of HSP's gapped (non-prelim): 350
length of query: 465
length of database: 191,569,459
effective HSP length: 121
effective length of query: 344
effective length of database: 126,275,923
effective search space: 43438917512
effective search space used: 43438917512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)