Query psy1329
Match_columns 465
No_of_seqs 244 out of 572
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 15:40:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2917|consensus 100.0 2.1E-86 4.6E-91 630.7 23.0 249 93-390 1-249 (250)
2 TIGR00291 RNA_SBDS rRNA metabo 100.0 1.3E-76 2.8E-81 568.0 27.3 229 102-379 1-230 (231)
3 PRK13760 putative RNA-associat 100.0 1.9E-75 4.1E-80 559.9 27.3 229 103-380 2-231 (231)
4 PTZ00448 hypothetical protein; 100.0 3.1E-75 6.6E-80 586.0 25.4 236 93-385 1-239 (373)
5 COG1500 Predicted exosome subu 100.0 1.4E-69 3E-74 516.9 22.7 232 102-382 1-233 (234)
6 PF09377 SBDS_C: SBDS protein 100.0 8.3E-39 1.8E-43 281.0 13.1 123 245-369 1-125 (125)
7 KOG2917|consensus 100.0 1.5E-38 3.2E-43 303.7 6.2 168 1-207 1-172 (250)
8 PTZ00448 hypothetical protein; 100.0 5.5E-38 1.2E-42 316.9 9.4 145 1-176 1-145 (373)
9 TIGR00291 RNA_SBDS rRNA metabo 100.0 2.1E-33 4.6E-38 270.1 8.6 137 10-176 1-137 (231)
10 COG1500 Predicted exosome subu 100.0 2.2E-32 4.7E-37 262.1 7.2 137 10-176 1-137 (234)
11 PRK13760 putative RNA-associat 100.0 4.4E-32 9.5E-37 261.0 8.9 137 10-176 1-137 (231)
12 PF01172 SBDS: Shwachman-Bodia 100.0 1.2E-29 2.7E-34 213.0 8.6 91 106-242 1-91 (91)
13 PF01172 SBDS: Shwachman-Bodia 99.9 5.1E-27 1.1E-31 197.1 5.9 81 14-94 1-81 (91)
14 PF09377 SBDS_C: SBDS protein 99.7 2.3E-17 5E-22 145.5 2.5 54 397-450 1-54 (125)
15 cd04097 mtEFG1_C mtEFG1_C: C-t 95.7 0.052 1.1E-06 43.8 7.2 66 311-378 4-69 (78)
16 PF09186 DUF1949: Domain of un 95.5 0.068 1.5E-06 39.7 6.8 55 318-373 2-56 (56)
17 PF00679 EFG_C: Elongation fac 95.4 0.09 1.9E-06 43.5 7.9 67 311-379 7-74 (89)
18 cd03711 Tet_C Tet_C: C-terminu 95.1 0.092 2E-06 42.4 7.0 66 311-378 4-69 (78)
19 cd03713 EFG_mtEFG_C EFG_mtEFG_ 95.1 0.073 1.6E-06 42.6 6.2 66 311-378 4-69 (78)
20 cd03710 BipA_TypA_C BipA_TypA_ 95.0 0.091 2E-06 42.7 6.8 66 311-378 4-70 (79)
21 cd01514 Elongation_Factor_C El 95.0 0.077 1.7E-06 42.5 6.2 66 311-378 4-70 (79)
22 cd04096 eEF2_snRNP_like_C eEF2 94.9 0.076 1.6E-06 42.8 5.9 66 311-378 4-71 (80)
23 cd04098 eEF2_C_snRNP eEF2_C_sn 94.8 0.082 1.8E-06 43.3 6.0 66 311-378 4-71 (80)
24 smart00838 EFG_C Elongation fa 94.6 0.12 2.6E-06 42.2 6.3 66 311-378 6-71 (85)
25 cd03709 lepA_C lepA_C: This fa 94.4 0.16 3.5E-06 41.5 6.8 66 311-378 4-71 (80)
26 TIGR00257 IMPACT_YIGZ uncharac 91.0 1.8 3.8E-05 42.2 9.7 73 306-379 130-202 (204)
27 PRK11568 hypothetical protein; 90.5 2 4.3E-05 41.8 9.5 67 311-378 135-201 (204)
28 PRK05433 GTP-binding protein L 75.5 7.3 0.00016 43.2 6.9 66 311-378 407-473 (600)
29 COG1739 Uncharacterized conser 74.9 9.8 0.00021 37.0 6.9 112 264-379 79-202 (203)
30 TIGR01393 lepA GTP-binding pro 72.1 11 0.00024 41.7 7.3 65 311-377 403-469 (595)
31 PF14257 DUF4349: Domain of un 71.7 16 0.00035 35.7 7.6 77 306-386 49-132 (262)
32 PRK12739 elongation factor G; 66.6 12 0.00026 41.9 6.2 67 311-379 603-669 (691)
33 PRK12740 elongation factor G; 65.9 12 0.00027 41.3 6.0 67 311-379 585-651 (668)
34 TIGR01394 TypA_BipA GTP-bindin 63.3 24 0.00052 39.3 7.7 67 311-379 397-464 (594)
35 KOG0465|consensus 62.9 15 0.00033 41.8 6.0 66 311-378 636-701 (721)
36 PRK07560 elongation factor EF- 61.2 13 0.00028 41.9 5.3 66 311-378 628-693 (731)
37 PRK13351 elongation factor G; 59.7 21 0.00047 39.7 6.5 66 311-378 602-668 (687)
38 PRK00007 elongation factor G; 58.1 21 0.00045 40.1 6.1 66 311-378 606-671 (693)
39 TIGR00484 EF-G translation elo 57.9 22 0.00048 39.8 6.3 66 311-378 603-668 (689)
40 PRK10218 GTP-binding protein; 57.8 28 0.0006 39.0 7.0 67 311-379 401-468 (607)
41 PLN00116 translation elongatio 55.5 17 0.00037 41.9 5.0 66 311-378 730-797 (843)
42 PF08006 DUF1700: Protein of u 52.0 21 0.00046 33.1 4.2 73 178-254 14-86 (181)
43 PTZ00416 elongation factor 2; 46.7 31 0.00066 39.9 5.3 67 310-378 722-790 (836)
44 PLN00064 photosystem II protei 46.4 73 0.0016 30.8 6.8 74 218-291 69-145 (166)
45 TIGR00490 aEF-2 translation el 40.8 41 0.00088 38.1 5.0 66 311-378 626-691 (720)
46 PF08890 XkdN: Phage XkdN-like 36.2 19 0.00042 32.7 1.3 29 205-233 84-112 (136)
47 PF10739 DUF2550: Protein of u 28.7 73 0.0016 29.0 3.7 28 14-41 92-119 (129)
48 PF15650 Tox-REase-9: Restrict 26.9 36 0.00077 29.9 1.4 23 410-432 41-68 (89)
49 cd07246 Glo_EDI_BRP_like_8 Thi 26.8 1.1E+02 0.0024 24.6 4.2 50 74-124 72-121 (122)
50 PF02826 2-Hacid_dh_C: D-isome 25.3 68 0.0015 29.6 3.0 56 144-199 117-176 (178)
51 COG1514 LigT 2'-5' RNA ligase 24.7 4.6E+02 0.0099 25.0 8.4 71 349-421 43-123 (180)
52 COG0480 FusA Translation elong 23.3 1.3E+02 0.0027 34.7 5.2 92 287-380 574-673 (697)
53 PHA00743 helix-turn-helix prot 23.1 1.4E+02 0.003 24.0 3.8 35 242-277 3-37 (51)
54 PRK11790 D-3-phosphoglycerate 22.3 5E+02 0.011 27.6 9.1 56 147-202 232-295 (409)
55 PF13326 PSII_Pbs27: Photosyst 22.1 86 0.0019 29.3 3.0 78 218-295 52-132 (145)
56 KOG3480|consensus 21.8 1.5E+02 0.0032 26.2 4.1 22 244-265 25-46 (90)
57 TIGR00119 acolac_sm acetolacta 20.9 7.1E+02 0.015 23.5 9.9 76 289-368 52-139 (157)
58 PF08265 YL1_C: YL1 nuclear pr 20.1 53 0.0011 23.4 0.9 16 256-271 10-25 (30)
No 1
>KOG2917|consensus
Probab=100.00 E-value=2.1e-86 Score=630.71 Aligned_cols=249 Identities=69% Similarity=1.030 Sum_probs=244.9
Q ss_pred ccceeeccccccccceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccchhhHHHhhhhcc
Q psy1329 93 MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNM 172 (465)
Q Consensus 93 Ms~i~~P~nqi~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~~~~~~~a~n~~~ 172 (465)
|+ ||||+||+||||||||||||+|+|||||||||||.+||+|.|+|||||||+|+||.|||||
T Consensus 1 ~~-i~tP~nQirLTNVavVrlKK~GkRFEiAcYkNKV~~wRng~ekdlDEVLQthtVf~NVSKG---------------- 63 (250)
T KOG2917|consen 1 MS-IFTPTNQIRLTNVAVVRLKKAGKRFEIACYKNKVVEWRNGVEKDLDEVLQTHTVFSNVSKG---------------- 63 (250)
T ss_pred CC-ccCcCCceEEEEEEEEEEeccCceEEEEEecchhhhhhhcCcccHHHHHHHhHhhhhcccc----------------
Confidence 44 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccchhhhhhhccccccccccccCCHHHHHHhhCCCCHHHHHHHHhhcCccccCHHHHHHHHHHHHHHHHH
Q psy1329 173 LNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIAT 252 (465)
Q Consensus 173 ~~~~~~~~~~~~~~~~al~~~~v~~n~~kg~~A~~~dLkkaFgT~D~~ei~k~IL~kGelQ~s~~ER~~~iE~~~keI~~ 252 (465)
+.|+++||+++|||+|+++||++||.+||+|+|++||..|++.++|+|++
T Consensus 64 ------------------------------~vAkk~dL~kaFg~~d~~~I~~eIl~kGe~QvsekeR~~~~~~~~r~I~~ 113 (250)
T KOG2917|consen 64 ------------------------------QVAKKEDLIKAFGTTDETEICKEILSKGELQVSEKERHSQLEKTFRDIVT 113 (250)
T ss_pred ------------------------------ccccHHHHHHHhCCCcHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCcHHHHHHHHhhcCcccccCcCHHHHHHHHHHHhhhhcCceeeeEEEEEEEeeCchhHHHHHHHHH
Q psy1329 253 IVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLV 332 (465)
Q Consensus 253 iI~~~~inp~Tk~P~p~~~IE~al~~i~~~v~~~k~~k~Qalevik~L~~~ipI~ra~m~v~v~~~ip~~~~~~~~~~l~ 332 (465)
+|+.+||||+|+||||+++||+||.++||++++|+|+|+||||+|++|++.|||+||+|++||. +|.+..+.+.++|.
T Consensus 114 iv~~k~vnpetkRpyp~s~iekal~e~hfsv~~nk~sK~QaleaIkkL~~~~pI~rarMrlRv~--v~~~~~~~l~ekl~ 191 (250)
T KOG2917|consen 114 IVAAKCVNPETKRPYPPSMIEKALQEIHFSVKTNKSSKQQALEAIKKLKEKMPIERARMRLRVS--VPVKEGKELKEKLK 191 (250)
T ss_pred HHHHHhcCCccCCcCCHHHHHHHHHhcceeecCCchHHHHHHHHHHHHHHhCchhhhceeEEEE--EeccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred hhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEeeeeeeccCchh
Q psy1329 333 KCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEE 390 (465)
Q Consensus 333 ~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl~~~~~~e~~e~ 390 (465)
++..+++.|+|++++|.++|+|+||.||+|+++++++|+|+|.++||+++++.||++.
T Consensus 192 ~l~~~ve~e~~~~~~~~~~~lI~pg~fr~~d~lvr~etk~kg~leiL~~~e~~e~e~~ 249 (250)
T KOG2917|consen 192 ELIDSVESEDWDPDQLECVCLIDPGCFREIDELVRKETKGKGRLEILDLKEVEEGEEC 249 (250)
T ss_pred HHhhccccccCCCCceEEEEEEcCCchHHHHHHHhhhccccceEEEEeeccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999863
No 2
>TIGR00291 RNA_SBDS rRNA metabolism protein, SBDS family. This protein family, possibly universal in both archaea and eukaryotes, appears to be involved in (ribosomal) RNA metabolism. Mutations in the human ortholog are associated with Shwachman-Bodian-Diamond syndrome.
Probab=100.00 E-value=1.3e-76 Score=568.02 Aligned_cols=229 Identities=31% Similarity=0.538 Sum_probs=225.8
Q ss_pred cccccceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccchhhHHHhhhhccccccccccc
Q psy1329 102 QIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNMLNISSLTSF 181 (465)
Q Consensus 102 qi~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~~~~~~~a~n~~~~~~~~~~~~ 181 (465)
|++||||+|||||++|+|||||||||+|.+||+|.++||+||||+++||+|+|||
T Consensus 1 ~i~ltnv~ivR~k~~g~rFEI~~~p~~v~~~R~g~~~~l~eVL~~~~VF~n~skG------------------------- 55 (231)
T TIGR00291 1 MVSLENAVIARLKKHGERFEVLVDPYLAADLREGIEVDFEDVLAIEEVFRDASKG------------------------- 55 (231)
T ss_pred CccccceEEEEEecCCceEEEEECHHHHHHHHcCCCCCHHHHhccceEEecCccc-------------------------
Confidence 7899999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhccccccccccccCCHHHHHHhhCCCCHHHHHHHHhhcCccccCHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1329 182 REKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINT 261 (465)
Q Consensus 182 ~~~~~~~al~~~~v~~n~~kg~~A~~~dLkkaFgT~D~~ei~k~IL~kGelQ~s~~ER~~~iE~~~keI~~iI~~~~inp 261 (465)
++|+++||+++|||+|.++||++||++||+|+|++||+.++|+++|+|+++||++||||
T Consensus 56 ---------------------~~As~~~L~k~FGT~d~~ei~~~IL~kGeiQls~~eR~~~~e~k~~~Ii~~Ia~~~VnP 114 (231)
T TIGR00291 56 ---------------------EKASEEDLRKIFGTTDVDEVAEKIILKGEIQLTAEQRREMLEKKRNQIINIISRNTINP 114 (231)
T ss_pred ---------------------ccCCHHHHHHHhCCCCHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHhhcCcccccCcCHHHHHHHHHHHhhhhcCceeeeEEEEEEEeeCchhHHHHHHHHHhhcccccee
Q psy1329 262 ETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENE 341 (465)
Q Consensus 262 ~Tk~P~p~~~IE~al~~i~~~v~~~k~~k~Qalevik~L~~~ipI~ra~m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~e 341 (465)
+|++|||+.|||+||+++||+|||+||+|+||+++||+|+++|||+|++|+++|+ +|.++++++++.|.+++. +++|
T Consensus 115 ~T~~P~p~~rIE~Am~e~~~~idp~k~ak~Qa~~vik~L~~iiPI~ra~m~i~v~--ip~~~~~~~~~~l~~~~~-i~~e 191 (231)
T TIGR00291 115 QTKKPHPPTRIEKALEEAKVHIDIFKSVEEQVLEIVKALKQIIPIKFEKMKVAIK--IPPERAGEAIEAISNFGA-VTPE 191 (231)
T ss_pred CCCCCCCHHHHHHHHHhcCcCcCCCCCHHHHHHHHHHHHhhhCCeeEeeEEEEEE--eCHHHHHHHHHHHHHhcc-cchh
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999997 9999
Q ss_pred ee-eCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEe
Q psy1329 342 EW-SGGGLLLICLIDPGKYREIDELVRTETRGQGTLELL 379 (465)
Q Consensus 342 e~-~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl 379 (465)
+| +||+|.++++||||+||+|+++|+++|+|++++++|
T Consensus 192 ew~~dgs~~~v~~I~pg~~~~~~~~l~~~tkG~~~~k~~ 230 (231)
T TIGR00291 192 EWQEDGSWICVGEIPSGNYRDLMTLLDKKTKGNVLTKVV 230 (231)
T ss_pred hccCCCcEEEEEEECCccHHHHHHHHHhhcCCeeEEEEe
Confidence 99 677899999999999999999999999999999987
No 3
>PRK13760 putative RNA-associated protein; Provisional
Probab=100.00 E-value=1.9e-75 Score=559.91 Aligned_cols=229 Identities=26% Similarity=0.464 Sum_probs=224.7
Q ss_pred ccccceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccchhhHHHhhhhcccccccccccc
Q psy1329 103 IRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNMLNISSLTSFR 182 (465)
Q Consensus 103 i~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~~~~~~~a~n~~~~~~~~~~~~~ 182 (465)
+.|||++||||+++|+||||+||||+|.+||+|.++||+|||++++||+|+|||
T Consensus 2 ~~l~n~~vvRlk~~g~~FEI~v~p~~v~~~R~g~~~~l~eVl~~~~VF~n~~kG-------------------------- 55 (231)
T PRK13760 2 VSLDDAVIARLESHGERFEILVDPDLALKFKEGKDVDIEDVLAVEEVFKDAKKG-------------------------- 55 (231)
T ss_pred CCccceEEEEEeeCCceEEEEECHHHHHHHHCCCCCCHHHHhccceEEecCccC--------------------------
Confidence 579999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhccccccccccccCCHHHHHHhhCCCCHHHHHHHHhhcCccccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1329 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTE 262 (465)
Q Consensus 183 ~~~~~~al~~~~v~~n~~kg~~A~~~dLkkaFgT~D~~ei~k~IL~kGelQ~s~~ER~~~iE~~~keI~~iI~~~~inp~ 262 (465)
++|++++|+++|||+|..+||+.||+|||+|+|++||+.++|+++|+|+++||++||||+
T Consensus 56 --------------------~~As~~~L~~~FGT~d~~~i~~~IL~kGeiQlt~~eR~~~~e~k~r~Ii~~Ia~~~vnP~ 115 (231)
T PRK13760 56 --------------------DKASEESLKKVFGTTDPLEIAEEIIKKGEIQLTAEQRREMLEEKRRQIINFIARNAINPQ 115 (231)
T ss_pred --------------------CcCCHHHHHHHhCCCCHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHhhcCcccccCcCHHHHHHHHHHHhhhhcCceeeeEEEEEEEeeCchhHHHHHHHHHhhccccceee
Q psy1329 263 TKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEE 342 (465)
Q Consensus 263 Tk~P~p~~~IE~al~~i~~~v~~~k~~k~Qalevik~L~~~ipI~ra~m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee 342 (465)
|++|||+.|||+||+++||+|||+||+|+||+++||+|+++|||+|++|+++|+ +|.++++++++.|.+++. +++|+
T Consensus 116 T~~P~p~~rIE~Am~e~~~~idp~k~ak~Qa~~vik~L~~~iPi~~~~~~~~v~--iP~~~~~~~~~~l~~~~~-i~~ee 192 (231)
T PRK13760 116 TGLPHPPQRIENAMEEARVHIDPFKSVEEQVKDIVKALRPIIPIKFEKARIAVK--IPPEYAGKAYGELRKFGE-IKKEE 192 (231)
T ss_pred CCCCCCHHHHHHHHHhcCcccCCCCCHHHHHHHHHHHHHHhCCcceeeEEEEEE--ECHHHHHHHHHHHHhhcc-cchhh
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999885 89999
Q ss_pred e-eCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEee
Q psy1329 343 W-SGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLN 380 (465)
Q Consensus 343 ~-~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl~ 380 (465)
| +||+|.++++||||+||+|+++|+++|+|+|++++|.
T Consensus 193 w~~dgs~~~v~~Ip~G~~~~~~~~~~~~tkG~~~~~vl~ 231 (231)
T PRK13760 193 WQSDGSWIAVLEIPAGLQNEFYDKLNKLTKGEAETKVLK 231 (231)
T ss_pred ccCCCcEEEEEEECCccHHHHHHHHHHhcCCcEEEEEcC
Confidence 9 6779999999999999999999999999999999974
No 4
>PTZ00448 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-75 Score=585.98 Aligned_cols=236 Identities=44% Similarity=0.721 Sum_probs=225.6
Q ss_pred ccceeeccccccccceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccchhhHHHhhhhcc
Q psy1329 93 MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNM 172 (465)
Q Consensus 93 Ms~i~~P~nqi~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~~~~~~~a~n~~~ 172 (465)
|+ ||||+||++||||+|||||++|+|||||||||||.+||+|.++||+||||+++||+|+|||
T Consensus 1 m~-i~qP~~qi~LtnvavVRlkk~GkrFEIacypnkv~~~R~G~e~dldeVLq~~~VF~NvsKG---------------- 63 (373)
T PTZ00448 1 MS-LFQPSNQIKLTNVAVVRYKSHGKRFEVACYKNKILNWRSGVEWDLDEVLQIRTIFANVSKG---------------- 63 (373)
T ss_pred CC-ccCCCCceEeeeeEEEEEeeCCEEEEEEECccHHHHHHcCCCCCHHHHhhhhheeeccccc----------------
Confidence 66 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccchhhhhhhccccccccccccCCHHHHHHhhCCCCHHHHHHHHhhcCccccCHHHHHHHHHHHHHHHHH
Q psy1329 173 LNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIAT 252 (465)
Q Consensus 173 ~~~~~~~~~~~~~~~~al~~~~v~~n~~kg~~A~~~dLkkaFgT~D~~ei~k~IL~kGelQ~s~~ER~~~iE~~~keI~~ 252 (465)
++|+++||++||||+|+.+||++||+|||+|+|++||+.++|+++|+|++
T Consensus 64 ------------------------------~~A~~edL~kaFGTtD~~eI~k~IL~KGElQlt~~ER~~~~E~k~r~Ii~ 113 (373)
T PTZ00448 64 ------------------------------QLANSDDLNTVFGTNSIDNICKTILSKGEIQVSETERSYMLDKQFTDICH 113 (373)
T ss_pred ------------------------------ccCCHHHHHHHhCCCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCcHHHHHHHHhhcCcccccCcCHHHHHHHHHHHhhhhcC--ceeeeEEEEEEEeeCchhHHHHHHH
Q psy1329 253 IVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMS--IERAQMRVRVEVSAGVKDVKKLKEK 330 (465)
Q Consensus 253 iI~~~~inp~Tk~P~p~~~IE~al~~i~~~v~~~k~~k~Qalevik~L~~~ip--I~ra~m~v~v~~~ip~~~~~~~~~~ 330 (465)
+|+++||||+|++|||+.|||+||+++||+|||+||+|+||+++||+|+++|| |+||+|+|+|. +|......+++.
T Consensus 114 ~Ia~~~InP~T~~P~P~~rIE~Am~e~~~~Vdp~Ksak~Qalevik~L~~iiPikiera~m~vki~--~~~~~~~~~~~~ 191 (373)
T PTZ00448 114 MLNRMTVNPKNNLPLSVKIIESELKDSGFSVSLNKTTKEQALKAFDILKKRIPDQIERAKMMLKLS--VDIVNKQNITKK 191 (373)
T ss_pred HHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCCHHHHHHHHHHHHHHhCCcceeEEEEEEEEe--cccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 88888888888 777677789999
Q ss_pred HHhh-ccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEeeeeeec
Q psy1329 331 LVKC-ATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVT 385 (465)
Q Consensus 331 l~~~-~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl~~~~~~ 385 (465)
|..+ +..++.++| ++.|.++|+|+||.||+|+++ +|+++||+++...
T Consensus 192 l~~~~~~~~~~e~~-~~~~~~~~~idP~~yR~~~~l-------~g~l~v~~~~v~~ 239 (373)
T PTZ00448 192 LNEFNVFPISSEEK-HNTYSITFLCEPRYYREIDQL-------DCKLLLLDSNVKT 239 (373)
T ss_pred Hhhccccccccccc-CCceEEEEEECCccccchhcc-------CceeEEEeeeccc
Confidence 9998 777899999 457999999999999999995 7889999987665
No 5
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-69 Score=516.93 Aligned_cols=232 Identities=33% Similarity=0.525 Sum_probs=228.0
Q ss_pred cccccceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccchhhHHHhhhhccccccccccc
Q psy1329 102 QIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNMLNISSLTSF 181 (465)
Q Consensus 102 qi~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~~~~~~~a~n~~~~~~~~~~~~ 181 (465)
|++|+|++|+||++||+||||+||||++.+||+|.+.||+||||+|+||.|||||
T Consensus 1 mv~l~~aviarlkk~GerFEvlvdP~~a~~~R~g~~vdleevLa~~~Vf~da~KG------------------------- 55 (234)
T COG1500 1 MVSLDDAVIARLKKHGERFEVLVDPNKALEYREGKEVDLEEVLATETVFKDASKG------------------------- 55 (234)
T ss_pred CccchhheeeeeccCCeeEEEEECHhHHHHHHcCCCCCHHHHHhHHHHHHhcccc-------------------------
Confidence 6899999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhccccccccccccCCHHHHHHhhCCCCHHHHHHHHhhcCccccCHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1329 182 REKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINT 261 (465)
Q Consensus 182 ~~~~~~~al~~~~v~~n~~kg~~A~~~dLkkaFgT~D~~ei~k~IL~kGelQ~s~~ER~~~iE~~~keI~~iI~~~~inp 261 (465)
++|+.+||+++|||+|..+|+++||.+||+|+|++||+.|+|.++|+|+++|+++||||
T Consensus 56 ---------------------~~Ase~dL~k~FgTtd~~eI~~eIl~kGeiQlTaeqR~~m~e~k~rqIi~~IsRn~IdP 114 (234)
T COG1500 56 ---------------------EKASEEDLKKAFGTTDPDEIAEEILKKGEIQLTAEQRREMLEEKKRQIINIISRNAIDP 114 (234)
T ss_pred ---------------------ccCCHHHHHHHhCCCCHHHHHHHHHhcCceeccHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHhhcCcccccCcCHHHHHHHHHHHhhhhcCceeeeEEEEEEEeeCchhHHHHHHHHHhhcccccee
Q psy1329 262 ETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENE 341 (465)
Q Consensus 262 ~Tk~P~p~~~IE~al~~i~~~v~~~k~~k~Qalevik~L~~~ipI~ra~m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~e 341 (465)
+|++|||+.|||+||++++|+|||+||+++||+++||+|++++||..++++++|. +|+++++++++.|.++|. +.+|
T Consensus 115 ~t~~P~Pp~rIe~Ameeakv~id~~K~ae~Qv~evlK~l~~i~pIrfera~vaVk--ip~e~~~k~~~~l~k~g~-i~~e 191 (234)
T COG1500 115 QTKAPHPPARIEKAMEEAKVHIDPFKSAEEQVQEVLKALRPIIPIRFERAKVAVK--IPVEYAGKAYGLLRKFGE-IKKE 191 (234)
T ss_pred CCCCCCCHHHHHHHHHhcCcccCCCCCHHHHHHHHHHHHhhcCCceeeeeeEEEE--ecccccchHHHHHHHhhh-hhhh
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999995 9999
Q ss_pred ee-eCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEeeee
Q psy1329 342 EW-SGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLK 382 (465)
Q Consensus 342 e~-~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl~~~ 382 (465)
+| .||+|.++++||||+|++|+++|+..|+|+++++++...
T Consensus 192 ew~~dgsw~~~~~ipaG~q~e~~~~l~~~~kG~~q~k~l~~~ 233 (234)
T COG1500 192 EWQEDGSWICVLEIPAGNQDEFYELLNELTKGEVQTKVLKVA 233 (234)
T ss_pred hcccCCceEEEEeeCcchHHHHHHHHHHhcCCcceeeeeeec
Confidence 99 889999999999999999999999999999999998653
No 6
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; GO: 0042254 ribosome biogenesis; PDB: 2KDO_A 2L9N_A 2WBM_B 1P9Q_C 1T95_A.
Probab=100.00 E-value=8.3e-39 Score=280.99 Aligned_cols=123 Identities=51% Similarity=0.803 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHhhcCcccccCcCHHHHHHHHHHHhhh--hcCceeeeEEEEEEEeeCch
Q psy1329 245 NQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ--CMSIERAQMRVRVEVSAGVK 322 (465)
Q Consensus 245 ~~~keI~~iI~~~~inp~Tk~P~p~~~IE~al~~i~~~v~~~k~~k~Qalevik~L~~--~ipI~ra~m~v~v~~~ip~~ 322 (465)
++||||+++||++||||+||+|||++|||+||+++||+|||++|+|+||+++||+|++ .|||+||+|+++|+ +|.+
T Consensus 1 q~~keI~~~Ia~~~VnP~T~rP~p~~~IE~Am~e~~~~v~p~ksak~QalevIk~L~~~~~ipI~ra~m~l~v~--ip~~ 78 (125)
T PF09377_consen 1 QKFKEIATIIAEKCVNPRTNRPYPPTRIEKAMKEAHFSVDPNKSAKQQALEVIKKLKEKQIIPIKRAKMRLRVT--IPSK 78 (125)
T ss_dssp CHHHHHHHHHHHHEEBTTTTBTT-HHHHHHHHHHTTS-SSTTS-HHHHHHHHHHHHTT--TS--EEEEEEEEEE--EBCC
T ss_pred ChHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHhCCCceeeeeEEEEEE--eCHH
Confidence 4799999999999999999999999999999999999999999999999999999999 99999999999999 9999
Q ss_pred hHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhh
Q psy1329 323 DVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTE 369 (465)
Q Consensus 323 ~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~ 369 (465)
+++++++.|.+++..++.++|++|+|.++|+|+||.||+|+++|++|
T Consensus 79 ~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~i~pg~~r~l~~~v~~e 125 (125)
T PF09377_consen 79 YAKKVKDKLLKLGAKIEEEEQNDGSWEMVFLIDPGLYRELDELVNKE 125 (125)
T ss_dssp CHHHHHHHHHHHSEEEEEEEETTSCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcEeeecccCCCeEEEEEEECCcchHHHHHHHccC
Confidence 99999999999998777777799999999999999999999999875
No 7
>KOG2917|consensus
Probab=100.00 E-value=1.5e-38 Score=303.72 Aligned_cols=168 Identities=49% Similarity=0.685 Sum_probs=141.6
Q ss_pred CCCccCCCcceecceEEEEEEeecCeeEEEEeecchhHHhhccCcCCchhhhcccceeeeccccccCCHHHHHHhhCCCC
Q psy1329 1 MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTED 80 (465)
Q Consensus 1 m~~i~~P~nqi~LtNvvIvRlKk~GkrFEIavyPnkv~~~R~G~e~dIdeVLq~d~VF~nvsKGe~As~edL~kaFGTtD 80 (465)
|+ ||||+||++||||+|||||++|+|||||||||||++||+|.++|||||||+|+||.|||||+.|+++||+++|||||
T Consensus 1 ~~-i~tP~nQirLTNVavVrlKK~GkRFEiAcYkNKV~~wRng~ekdlDEVLQthtVf~NVSKG~vAkk~dL~kaFg~~d 79 (250)
T KOG2917|consen 1 MS-IFTPTNQIRLTNVAVVRLKKAGKRFEIACYKNKVVEWRNGVEKDLDEVLQTHTVFSNVSKGQVAKKEDLIKAFGTTD 79 (250)
T ss_pred CC-ccCcCCceEEEEEEEEEEeccCceEEEEEecchhhhhhhcCcccHHHHHHHhHhhhhccccccccHHHHHHHhCCCc
Confidence 55 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCccceeeccccccccceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccc
Q psy1329 81 QTEICKLILMKDMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAAN 160 (465)
Q Consensus 81 ~~eIak~IL~KGMs~i~~P~nqi~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~ 160 (465)
.++||++||.+|.. ++..-++. .-++....||..++... +.|.-.+-+||
T Consensus 80 ~~~I~~eIl~kGe~--------------QvsekeR~--------------~~~~~~~r~I~~iv~~k--~vnpetkRpyp 129 (250)
T KOG2917|consen 80 ETEICKEILSKGEL--------------QVSEKERH--------------SQLEKTFRDIVTIVAAK--CVNPETKRPYP 129 (250)
T ss_pred HHHHHHHHHhhhhh--------------hhhhhHHH--------------HHHHHHHHHHHHHHHHH--hcCCccCCcCC
Confidence 99999999999965 22222221 12445678888999888 78999999999
Q ss_pred hhhHHHhhhhccccccccccccccch----hhhhhhccccccccccccCCH
Q psy1329 161 KEDLKKAFNTNMLNISSLTSFREKDI----DEVLQTHTVFTNVSKGQAANK 207 (465)
Q Consensus 161 ~~~~~~a~n~~~~~~~~~~~~~~~~~----~~al~~~~v~~n~~kg~~A~~ 207 (465)
...|++||-+.. |..+-+ .|||-++.-+.-+-|..+|.+
T Consensus 130 ~s~iekal~e~h--------fsv~~nk~sK~QaleaIkkL~~~~pI~rarM 172 (250)
T KOG2917|consen 130 PSMIEKALQEIH--------FSVKTNKSSKQQALEAIKKLKEKMPIERARM 172 (250)
T ss_pred HHHHHHHHHhcc--------eeecCCchHHHHHHHHHHHHHHhCchhhhce
Confidence 999999999944 444433 566766666655566666654
No 8
>PTZ00448 hypothetical protein; Provisional
Probab=100.00 E-value=5.5e-38 Score=316.88 Aligned_cols=145 Identities=41% Similarity=0.659 Sum_probs=130.4
Q ss_pred CCCccCCCcceecceEEEEEEeecCeeEEEEeecchhHHhhccCcCCchhhhcccceeeeccccccCCHHHHHHhhCCCC
Q psy1329 1 MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTED 80 (465)
Q Consensus 1 m~~i~~P~nqi~LtNvvIvRlKk~GkrFEIavyPnkv~~~R~G~e~dIdeVLq~d~VF~nvsKGe~As~edL~kaFGTtD 80 (465)
|+ ||||+||++|||++|||||+||+|||||||||+|++||+|.++||+||||+++||+|+|||++|+++||++||||+|
T Consensus 1 m~-i~qP~~qi~LtnvavVRlkk~GkrFEIacypnkv~~~R~G~e~dldeVLq~~~VF~NvsKG~~A~~edL~kaFGTtD 79 (373)
T PTZ00448 1 MS-LFQPSNQIKLTNVAVVRYKSHGKRFEVACYKNKILNWRSGVEWDLDEVLQIRTIFANVSKGQLANSDDLNTVFGTNS 79 (373)
T ss_pred CC-ccCCCCceEeeeeEEEEEeeCCEEEEEEECccHHHHHHcCCCCCHHHHhhhhheeecccccccCCHHHHHHHhCCCC
Confidence 78 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCccceeeccccccccceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccc
Q psy1329 81 QTEICKLILMKDMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAAN 160 (465)
Q Consensus 81 ~~eIak~IL~KGMs~i~~P~nqi~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~ 160 (465)
..+||++||.||.. ++..-+|. . --+...++|..+++.. |.|..+|.|+|
T Consensus 80 ~~eI~k~IL~KGEl--------------Qlt~~ER~-----------~---~~E~k~r~Ii~~Ia~~--~InP~T~~P~P 129 (373)
T PTZ00448 80 IDNICKTILSKGEI--------------QVSETERS-----------Y---MLDKQFTDICHMLNRM--TVNPKNNLPLS 129 (373)
T ss_pred HHHHHHHHHhcCCc--------------ccCHHHHH-----------H---HHHHHHHHHHHHHHHh--ccCCCCCCCCC
Confidence 99999999999976 11111110 1 1244577899999888 77999999999
Q ss_pred hhhHHHhhhhcccccc
Q psy1329 161 KEDLKKAFNTNMLNIS 176 (465)
Q Consensus 161 ~~~~~~a~n~~~~~~~ 176 (465)
..+|++||+++.++|+
T Consensus 130 ~~rIE~Am~e~~~~Vd 145 (373)
T PTZ00448 130 VKIIESELKDSGFSVS 145 (373)
T ss_pred HHHHHHHHHhcCcccC
Confidence 9999999999999888
No 9
>TIGR00291 RNA_SBDS rRNA metabolism protein, SBDS family. This protein family, possibly universal in both archaea and eukaryotes, appears to be involved in (ribosomal) RNA metabolism. Mutations in the human ortholog are associated with Shwachman-Bodian-Diamond syndrome.
Probab=100.00 E-value=2.1e-33 Score=270.08 Aligned_cols=137 Identities=27% Similarity=0.431 Sum_probs=122.7
Q ss_pred ceecceEEEEEEeecCeeEEEEeecchhHHhhccCcCCchhhhcccceeeeccccccCCHHHHHHhhCCCCHHHHHHHHH
Q psy1329 10 QIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLIL 89 (465)
Q Consensus 10 qi~LtNvvIvRlKk~GkrFEIavyPnkv~~~R~G~e~dIdeVLq~d~VF~nvsKGe~As~edL~kaFGTtD~~eIak~IL 89 (465)
|++|||++|||||+||+|||||||||+|.+||+|.++||+||||++.||+|++||++||+++|+++|||+|.++||+.||
T Consensus 1 ~i~ltnv~ivR~k~~g~rFEI~~~p~~v~~~R~g~~~~l~eVL~~~~VF~n~skG~~As~~~L~k~FGT~d~~ei~~~IL 80 (231)
T TIGR00291 1 MVSLENAVIARLKKHGERFEVLVDPYLAADLREGIEVDFEDVLAIEEVFRDASKGEKASEEDLRKIFGTTDVDEVAEKII 80 (231)
T ss_pred CccccceEEEEEecCCceEEEEECHHHHHHHHcCCCCCHHHHhccceEEecCcccccCCHHHHHHHhCCCCHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccceeeccccccccceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccchhhHHHhhh
Q psy1329 90 MKDMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 169 (465)
Q Consensus 90 ~KGMs~i~~P~nqi~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~~~~~~~a~n 169 (465)
++|.. |.+.. +|. .--+...++|...+... |.|..+|.|+|..+|++||+
T Consensus 81 ~kGei---Qls~~-----------eR~--------------~~~e~k~~~Ii~~Ia~~--~VnP~T~~P~p~~rIE~Am~ 130 (231)
T TIGR00291 81 LKGEI---QLTAE-----------QRR--------------EMLEKKRNQIINIISRN--TINPQTKKPHPPTRIEKALE 130 (231)
T ss_pred hcCCc---cCCHH-----------HHH--------------HHHHHHHHHHHHHHHHh--CcCCCCCCCCCHHHHHHHHH
Confidence 99976 22221 110 11244677899999888 88999999999999999999
Q ss_pred hcccccc
Q psy1329 170 TNMLNIS 176 (465)
Q Consensus 170 ~~~~~~~ 176 (465)
++.++|+
T Consensus 131 e~~~~id 137 (231)
T TIGR00291 131 EAKVHID 137 (231)
T ss_pred hcCcCcC
Confidence 9999988
No 10
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.2e-32 Score=262.07 Aligned_cols=137 Identities=31% Similarity=0.481 Sum_probs=120.6
Q ss_pred ceecceEEEEEEeecCeeEEEEeecchhHHhhccCcCCchhhhcccceeeeccccccCCHHHHHHhhCCCCHHHHHHHHH
Q psy1329 10 QIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLIL 89 (465)
Q Consensus 10 qi~LtNvvIvRlKk~GkrFEIavyPnkv~~~R~G~e~dIdeVLq~d~VF~nvsKGe~As~edL~kaFGTtD~~eIak~IL 89 (465)
|++|+|++||||++||+|||||||||+|++||+|.++||+||||+++||.|||||++||++||+++|||||+.+|+++||
T Consensus 1 mv~l~~aviarlkk~GerFEvlvdP~~a~~~R~g~~vdleevLa~~~Vf~da~KG~~Ase~dL~k~FgTtd~~eI~~eIl 80 (234)
T COG1500 1 MVSLDDAVIARLKKHGERFEVLVDPNKALEYREGKEVDLEEVLATETVFKDASKGEKASEEDLKKAFGTTDPDEIAEEIL 80 (234)
T ss_pred CccchhheeeeeccCCeeEEEEECHhHHHHHHcCCCCCHHHHHhHHHHHHhccccccCCHHHHHHHhCCCCHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccceeeccccccccceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccchhhHHHhhh
Q psy1329 90 MKDMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 169 (465)
Q Consensus 90 ~KGMs~i~~P~nqi~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~~~~~~~a~n 169 (465)
.+|.. .||- .-=....+.....|-+.+.-+ ..|...|.+.|..+|++||.
T Consensus 81 ~kGei---------QlTa-------------------eqR~~m~e~k~rqIi~~IsRn--~IdP~t~~P~Pp~rIe~Ame 130 (234)
T COG1500 81 KKGEI---------QLTA-------------------EQRREMLEEKKRQIINIISRN--AIDPQTKAPHPPARIEKAME 130 (234)
T ss_pred hcCce---------eccH-------------------HHHHHHHHHHHHHHHHHHHHh--ccCCCCCCCCCHHHHHHHHH
Confidence 99954 1111 011112345566777777777 56999999999999999999
Q ss_pred hcccccc
Q psy1329 170 TNMLNIS 176 (465)
Q Consensus 170 ~~~~~~~ 176 (465)
++.+.|+
T Consensus 131 eakv~id 137 (234)
T COG1500 131 EAKVHID 137 (234)
T ss_pred hcCcccC
Confidence 9999998
No 11
>PRK13760 putative RNA-associated protein; Provisional
Probab=99.97 E-value=4.4e-32 Score=261.04 Aligned_cols=137 Identities=24% Similarity=0.409 Sum_probs=121.9
Q ss_pred ceecceEEEEEEeecCeeEEEEeecchhHHhhccCcCCchhhhcccceeeeccccccCCHHHHHHhhCCCCHHHHHHHHH
Q psy1329 10 QIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLIL 89 (465)
Q Consensus 10 qi~LtNvvIvRlKk~GkrFEIavyPnkv~~~R~G~e~dIdeVLq~d~VF~nvsKGe~As~edL~kaFGTtD~~eIak~IL 89 (465)
+++|||++||||++||+||||+||||+|.+||+|.++||+|||+++.||+|++||++||+++|+++|||+|.++||+.||
T Consensus 1 m~~l~n~~vvRlk~~g~~FEI~v~p~~v~~~R~g~~~~l~eVl~~~~VF~n~~kG~~As~~~L~~~FGT~d~~~i~~~IL 80 (231)
T PRK13760 1 MVSLDDAVIARLESHGERFEILVDPDLALKFKEGKDVDIEDVLAVEEVFKDAKKGDKASEESLKKVFGTTDPLEIAEEII 80 (231)
T ss_pred CCCccceEEEEEeeCCceEEEEECHHHHHHHHCCCCCCHHHHhccceEEecCccCCcCCHHHHHHHhCCCCHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccceeeccccccccceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccchhhHHHhhh
Q psy1329 90 MKDMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 169 (465)
Q Consensus 90 ~KGMs~i~~P~nqi~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~~~~~~~a~n 169 (465)
+||.. |.+. -+| .. --+...++|...+... |.|..+|.|+|..+|++||+
T Consensus 81 ~kGei---Qlt~-----------~eR-----------~~---~~e~k~r~Ii~~Ia~~--~vnP~T~~P~p~~rIE~Am~ 130 (231)
T PRK13760 81 KKGEI---QLTA-----------EQR-----------RE---MLEEKRRQIINFIARN--AINPQTGLPHPPQRIENAME 130 (231)
T ss_pred hcCCc---cCCH-----------HHH-----------HH---HHHHHHHHHHHHHHHh--ccCCCCCCCCCHHHHHHHHH
Confidence 99976 2222 111 01 1244577899999888 88999999999999999999
Q ss_pred hcccccc
Q psy1329 170 TNMLNIS 176 (465)
Q Consensus 170 ~~~~~~~ 176 (465)
++.++|+
T Consensus 131 e~~~~id 137 (231)
T PRK13760 131 EARVHID 137 (231)
T ss_pred hcCcccC
Confidence 9999988
No 12
>PF01172 SBDS: Shwachman-Bodian-Diamond syndrome (SBDS) protein ; InterPro: IPR019783 This entry represents the N-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; PDB: 1NYN_A 2WBM_B 1P9Q_C 1T95_A 2KDO_A 2L9N_A.
Probab=99.96 E-value=1.2e-29 Score=212.95 Aligned_cols=91 Identities=55% Similarity=0.782 Sum_probs=84.4
Q ss_pred cceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccchhhHHHhhhhccccccccccccccc
Q psy1329 106 TNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNMLNISSLTSFREKD 185 (465)
Q Consensus 106 tnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~~~~~~~a~n~~~~~~~~~~~~~~~~ 185 (465)
||+++||||++|++|||+||||++.+||+|.++||++||+++.||+|++||
T Consensus 1 tn~~~v~yk~~g~~fEi~v~p~~~~~~r~g~~~~l~~Vl~~~~IF~~~~kG----------------------------- 51 (91)
T PF01172_consen 1 TNVVIVRYKKGGKRFEILVYPNKVEKYREGKSIPLDDVLQSFKIFTNVSKG----------------------------- 51 (91)
T ss_dssp TTEEEEEEEETTEEEEEEEEHHHHHHHHCT-HCHHHHHBSSSSEEEETTTT-----------------------------
T ss_pred CceEEEEEecCCceEEEEEecChHHHHhcCCCCCHHHHhheeeEEecCCcC-----------------------------
Confidence 799999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccccccccCCHHHHHHhhCCCCHHHHHHHHhhcCccccCHHHHHHH
Q psy1329 186 IDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242 (465)
Q Consensus 186 ~~~al~~~~v~~n~~kg~~A~~~dLkkaFgT~D~~ei~k~IL~kGelQ~s~~ER~~~ 242 (465)
+.|++++|+++|||+|..+||+.||++|++|+|++||++|
T Consensus 52 -----------------~~As~~~L~~~FGT~d~~~ii~~IL~~Ge~q~t~~~rr~m 91 (91)
T PF01172_consen 52 -----------------ERASKEDLENAFGTTDVDEIIKKILKKGEIQLTAEERREM 91 (91)
T ss_dssp -----------------EEE-HHHHHHHHSSS-HHHHHHHHHHHSEEE--HHHHHHH
T ss_pred -----------------CcCCHHHHHHHhCCCCHHHHHHHHHhcCCccCChhhhhcC
Confidence 8899999999999999999999999999999999999986
No 13
>PF01172 SBDS: Shwachman-Bodian-Diamond syndrome (SBDS) protein ; InterPro: IPR019783 This entry represents the N-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; PDB: 1NYN_A 2WBM_B 1P9Q_C 1T95_A 2KDO_A 2L9N_A.
Probab=99.93 E-value=5.1e-27 Score=197.14 Aligned_cols=81 Identities=56% Similarity=0.747 Sum_probs=76.7
Q ss_pred ceEEEEEEeecCeeEEEEeecchhHHhhccCcCCchhhhcccceeeeccccccCCHHHHHHhhCCCCHHHHHHHHHccCc
Q psy1329 14 TNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKDM 93 (465)
Q Consensus 14 tNvvIvRlKk~GkrFEIavyPnkv~~~R~G~e~dIdeVLq~d~VF~nvsKGe~As~edL~kaFGTtD~~eIak~IL~KGM 93 (465)
||+++||||++|++|||+||||++.+||+|.++||++||+++.||+|++||++||+++|.++|||+|.++||+.||++|.
T Consensus 1 tn~~~v~yk~~g~~fEi~v~p~~~~~~r~g~~~~l~~Vl~~~~IF~~~~kG~~As~~~L~~~FGT~d~~~ii~~IL~~Ge 80 (91)
T PF01172_consen 1 TNVVIVRYKKGGKRFEILVYPNKVEKYREGKSIPLDDVLQSFKIFTNVSKGERASKEDLENAFGTTDVDEIIKKILKKGE 80 (91)
T ss_dssp TTEEEEEEEETTEEEEEEEEHHHHHHHHCT-HCHHHHHBSSSSEEEETTTTEEE-HHHHHHHHSSS-HHHHHHHHHHHSE
T ss_pred CceEEEEEecCCceEEEEEecChHHHHhcCCCCCHHHHhheeeEEecCCcCCcCCHHHHHHHhCCCCHHHHHHHHHhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q psy1329 94 S 94 (465)
Q Consensus 94 s 94 (465)
.
T Consensus 81 ~ 81 (91)
T PF01172_consen 81 I 81 (91)
T ss_dssp E
T ss_pred c
Confidence 6
No 14
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; GO: 0042254 ribosome biogenesis; PDB: 2KDO_A 2L9N_A 2WBM_B 1P9Q_C 1T95_A.
Probab=99.66 E-value=2.3e-17 Score=145.54 Aligned_cols=54 Identities=54% Similarity=0.835 Sum_probs=48.5
Q ss_pred hhhhhHHHHhhhcccCCCCCCcchHHHHHhhhhheeeeeccCCchhhhhhhccc
Q psy1329 397 NQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEEDK 450 (465)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (465)
++++|||++|+++||||.|+|||+.+|||++|+++||||+||+|+|+||||+-|
T Consensus 1 q~~keI~~~Ia~~~VnP~T~rP~p~~~IE~Am~e~~~~v~p~ksak~QalevIk 54 (125)
T PF09377_consen 1 QKFKEIATIIAEKCVNPRTNRPYPPTRIEKAMKEAHFSVDPNKSAKQQALEVIK 54 (125)
T ss_dssp CHHHHHHHHHHHHEEBTTTTBTT-HHHHHHHHHHTTS-SSTTS-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhCCcccCCCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999754
No 15
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=95.65 E-value=0.052 Score=43.77 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=55.6
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
+++.|. +|.++.+++.+.|.+....+.+.+..++...+.+.+|-...-.+...|+..|+|+|.+..
T Consensus 4 ~~~~I~--~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~ 69 (78)
T cd04097 4 MKVEVT--APTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSM 69 (78)
T ss_pred EEEEEE--ecHHHHHHHHHHHHHCCCEEeceEecCCeEEEEEEECHHHhhChHHHHHhhCCCcEEEEE
Confidence 566677 999999999999998766676666545678899999998888999999999999998765
No 16
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=95.48 E-value=0.068 Score=39.74 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=48.3
Q ss_pred eeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCc
Q psy1329 318 SAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQ 373 (465)
Q Consensus 318 ~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~ 373 (465)
++|-...++++-.|..++-.+.+++|++ ...+.+.|||....+|...|...|+|+
T Consensus 2 ~~~Y~~~~~v~~~l~~~~~~i~~~~y~~-~V~~~v~v~~~~~~~f~~~l~~~t~G~ 56 (56)
T PF09186_consen 2 SCDYSQYGKVERLLEQNGIEIVDEDYTD-DVTLTVAVPEEEVEEFKAQLTDLTSGR 56 (56)
T ss_dssp EE-CCCHHHHHHHHHHTTTEEEEEEECT-TEEEEEEEECCCHHHHHHHHHHHTTT-
T ss_pred EechhhHHHHHHHHHHCCCEEEcceecc-eEEEEEEECHHHHHHHHHHHHHHcCCC
Confidence 3778888999999999988889999955 499999999999999999999999996
No 17
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=95.40 E-value=0.09 Score=43.51 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=55.9
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeee-CCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEe
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWS-GGGLLLICLIDPGKYREIDELVRTETRGQGTLELL 379 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~-~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl 379 (465)
|++.|. +|.++.+++...|.+....+.+.+-. ++...+.+.+|--.-..+...++..|+|+|.+..-
T Consensus 7 ~~~~I~--~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~ 74 (89)
T PF00679_consen 7 MSVEIS--VPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSME 74 (89)
T ss_dssp EEEEEE--EEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEE
T ss_pred EEEEEE--ECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEE
Confidence 566777 99999999999999988777776654 67889999999988889999999999999988764
No 18
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=95.14 E-value=0.092 Score=42.36 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=55.3
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+++.+.|.+....+.+.+..++...+.+.+|-...-.+...|+..|+|.|.+..
T Consensus 4 ~~~~i~--~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~ 69 (78)
T cd03711 4 LRFELE--VPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPSYTHGEGVLET 69 (78)
T ss_pred EEEEEE--cCHHHHHHHHHHHHHcCCEeeCcEecCCEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEE
Confidence 566677 999999999999998766676665545788899999988888889999999999998764
No 19
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=95.08 E-value=0.073 Score=42.64 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=54.8
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+++...|.+....+.+.+..++...+.+.+|--..-.+...|+..|+|.|.+..
T Consensus 4 ~~~~I~--~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~ 69 (78)
T cd03713 4 MKVEVT--VPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTM 69 (78)
T ss_pred EEEEEE--cCHHHHHHHHHHHHHcCCceEceeccCCcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEE
Confidence 566677 999999999999988665676666545678899999988888899999999999998765
No 20
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=95.05 E-value=0.091 Score=42.67 Aligned_cols=66 Identities=21% Similarity=0.166 Sum_probs=55.5
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeC-CeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSG-GGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~-g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+++.+.|.+....+...+..+ +.+.+.+.+|-..--.+...|+..|+|+|.+..
T Consensus 4 ~~v~I~--~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~ 70 (79)
T cd03710 4 EELTID--VPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNH 70 (79)
T ss_pred EEEEEE--eCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEE
Confidence 566777 999999999999998776677766644 568899999988888889999999999998765
No 21
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=95.02 E-value=0.077 Score=42.49 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=55.9
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeC-CeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSG-GGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~-g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
+++.|. +|.++.+++.+.|.+....+.+.+..+ +.+.+.+.+|-...-.+...|+..|+|+|.+..
T Consensus 4 ~~~~I~--~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~ 70 (79)
T cd01514 4 MKVEIT--VPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSM 70 (79)
T ss_pred EEEEEE--cCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEE
Confidence 456666 999999999999988776677666645 678899999999889999999999999998765
No 22
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=94.90 E-value=0.076 Score=42.84 Aligned_cols=66 Identities=20% Similarity=0.146 Sum_probs=54.8
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCe--EEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGG--LLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~--~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+.+...|.+....+...+..+++ ..+.+.+|-...-.+...|+..|+|+|.+..
T Consensus 4 ~~~~I~--~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~ 71 (80)
T cd04096 4 YLVEIQ--CPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQL 71 (80)
T ss_pred EEEEEE--EcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEE
Confidence 566777 99999999999998877667766664333 8899999998888899999999999998864
No 23
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=94.83 E-value=0.082 Score=43.27 Aligned_cols=66 Identities=17% Similarity=0.100 Sum_probs=56.2
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCe--EEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGG--LLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~--~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+.+.+.|.+....|..++..+|+ ..+.+.+|-..--.+...|+..|.|+|.+..
T Consensus 4 ~~~ei~--~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~ 71 (80)
T cd04098 4 YEVEIT--CPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQS 71 (80)
T ss_pred EEEEEE--ECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEE
Confidence 667777 99999999999999877678777775556 7899999999888999999999999998754
No 24
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=94.55 E-value=0.12 Score=42.24 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=54.5
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+.+.+.|.+....+...+..++.+.+.+.+|-..--.+...|+..|+|+|.+..
T Consensus 6 ~~~~I~--~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~ 71 (85)
T smart00838 6 MKVEVT--VPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLRSATQGRATWSM 71 (85)
T ss_pred EEEEEE--eCHHHHHHHHHHHHHcCCEEECeeccCCcEEEEEECCHHHHhchHHHHHHhcCCeEEEEE
Confidence 566667 999999999999988665666555545578899999998888899999999999998865
No 25
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=94.43 E-value=0.16 Score=41.45 Aligned_cols=66 Identities=8% Similarity=0.154 Sum_probs=53.4
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeee-eCCeEEEEEEecCCCh-HHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEW-SGGGLLLICLIDPGKY-REIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~-~~g~~~~~~~I~PG~~-rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+.+.+.|.+....+..-+. +++...+.+.+|-... ..+...|+..|+|.|.+..
T Consensus 4 ~~v~i~--vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~ 71 (80)
T cd03709 4 VKATII--TPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDY 71 (80)
T ss_pred EEEEEE--eCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEE
Confidence 566677 9999999999999987765654444 4457888999998777 7888999999999999865
No 26
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=91.00 E-value=1.8 Score=42.21 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=58.4
Q ss_pred ceeeeEEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEe
Q psy1329 306 IERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELL 379 (465)
Q Consensus 306 I~ra~m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl 379 (465)
+........+.+++|-...+++...|..+.-.+.+++|+ +...+.+.+|+.....|.+.+...|.|+..++..
T Consensus 130 ~~~~~~~~~~~~~~~y~~~~~v~~~l~~~~~~i~~~~y~-~~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~~~ 202 (204)
T TIGR00257 130 KEEKLELEILSLHCDYKQLDALERELKKFQLEIIKSNFS-NNVVLVEISGTKENLAFSEQLTEISLGQLILKFN 202 (204)
T ss_pred eEEEEEEEEEEEEechhHHHHHHHHHHHCCCEEEeeEec-CCEEEEEEECHHHHHHHHHHHHHHhCCeEEEEec
Confidence 333333344444488888999999999988778899995 4699999999999999999999999999887654
No 27
>PRK11568 hypothetical protein; Provisional
Probab=90.49 E-value=2 Score=41.84 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=56.1
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
....+.+++|-...+.++..|.+..-.+.+++|+ +...+.+.+|+.....|.+.+...|+|+..++.
T Consensus 135 ~~~~~~i~~~y~~~~~v~~~l~~~~~~i~~~~y~-~~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~~ 201 (204)
T PRK11568 135 PLTEYTLQCEYAQLAGIEALLGQFDGKIVNSEYQ-AFVTLRVALPAAKVAEFSAKLADFSRGSLQLLA 201 (204)
T ss_pred EeEEEEEEECcchHHHHHHHHHHCCCEEEcceec-CCEEEEEEECHHHHHHHHHHHHHHhCCeEEEEe
Confidence 3344444488889999999999988778899994 568999999999999999999999999887764
No 28
>PRK05433 GTP-binding protein LepA; Provisional
Probab=75.52 E-value=7.3 Score=43.17 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=54.0
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCCh-HHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKY-REIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~-rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.+|.+.+.+.+.+.-..+..-++.++...+...+|-.-- ..+...|++.|+|.|.+..
T Consensus 407 ~~~~i~--~P~~~~G~vm~~~~~rRG~~~~~~~~~~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~ 473 (600)
T PRK05433 407 VKATII--VPQEYVGAVMELCQEKRGVQKDMEYLGNRVELTYELPLAEIVFDFFDRLKSVSRGYASLDY 473 (600)
T ss_pred EEEEEE--ecHHHHHHHHHHHHHcCCEEeCcEecCCeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEE
Confidence 566777 99999999999998876556666664567888999998777 7889999999999998763
No 29
>COG1739 Uncharacterized conserved protein [Function unknown]
Probab=74.94 E-value=9.8 Score=37.03 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=75.2
Q ss_pred CCCCcHHHHHHHHhhcCccccc-Cc--------CHHHHHH---HHHHHhhhhcCceeeeEEEEEEEeeCchhHHHHHHHH
Q psy1329 264 KRPFTVSMIEAGLKQIHFSVNV-NK--------NSKQQAL---EVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKL 331 (465)
Q Consensus 264 k~P~p~~~IE~al~~i~~~v~~-~k--------~~k~Qal---evik~L~~~ipI~ra~m~v~v~~~ip~~~~~~~~~~l 331 (465)
|.|+........|..+..-|.. +. -..+-+- ++++.... ++ .+..-.+.+. ++-...+.+...+
T Consensus 79 G~P~l~~l~~~~l~n~~~vvtRyFGGikLG~GGLvrAY~~~v~~~l~~~~~-~e-~~~~~~~~~~--~~y~~l~~l~~~l 154 (203)
T COG1739 79 GKPMLAVLEKSDLVNVLVVVVRYFGGIKLGTGGLVRAYANAVKSALEAAEA-IE-KKEAKANHVG--CAYRILGLLERLL 154 (203)
T ss_pred CCcHHHHHhhcCccceEEEEEeccCCEEcCCcccHHHHHHHHHHHHHHhhc-ch-hhhhhheeec--cchhhhHHHHHHH
Confidence 7777777666666665443322 21 1222222 22222221 11 1122233444 6777888888889
Q ss_pred HhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEe
Q psy1329 332 VKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELL 379 (465)
Q Consensus 332 ~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl 379 (465)
......+..++|++++..+.+.++...+..+..++...+.|+..++-.
T Consensus 155 ~~~~~~i~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~ 202 (203)
T COG1739 155 KQNDDDVEEARYSGGSVLLTVRFRHIVIEAVSRLLKGNHIGPDRFKHI 202 (203)
T ss_pred HhccceEEEeeecCCeEEEEEEechhhHHHHHHHHhhccCCceEEecC
Confidence 888666899999999999999999999999999999999999988643
No 30
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=72.07 E-value=11 Score=41.70 Aligned_cols=65 Identities=9% Similarity=0.123 Sum_probs=53.2
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeee-eCCeEEEEEEecCCCh-HHHHHHHHhhcCCceEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEW-SGGGLLLICLIDPGKY-REIDELVRTETRGQGTLE 377 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~-~~g~~~~~~~I~PG~~-rei~~~v~~~tkG~g~~e 377 (465)
|++.|. +|.++.+.+.+.+...-..+..-++ +++...+...+|-.-. ..+...|++.|+|.|.+.
T Consensus 403 ~~~~i~--~P~~~~G~vm~~~~~rRG~~~~~~~~~~~~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~ 469 (595)
T TIGR01393 403 VKATII--TPTEYLGPIMTLCQEKRGVQTNMEYLDPNRVELIYEMPLAEIVYDFFDKLKSISRGYASFD 469 (595)
T ss_pred EEEEEE--ccHHHHHHHHHHHHHcCCEEeCcEEcCCCeEEEEEEeccchhhhchhHHhhhhcCCEEEEE
Confidence 567777 9999999999999886655666666 3456788999998875 888999999999999875
No 31
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=71.74 E-value=16 Score=35.74 Aligned_cols=77 Identities=21% Similarity=0.223 Sum_probs=48.9
Q ss_pred ceeeeEEEEEEEeeCchhHHHHHHHHHhhccccceeeee-------CCeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 306 IERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWS-------GGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 306 I~ra~m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~-------~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|..+.+++.+. =+.+...++...+.+++..|.+++.+ .....+.+.|||..|+.+.+.+.+. |...-+-
T Consensus 49 i~~~~l~lev~--d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~--g~v~~~~ 124 (262)
T PF14257_consen 49 IKTADLSLEVK--DVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSEL--GKVTSRN 124 (262)
T ss_pred EEEEEEEEEEC--CHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhcc--Cceeeee
Confidence 55666666664 33344456666666666556655542 3557899999999999999999844 4444444
Q ss_pred eeeeeecc
Q psy1329 379 LNLKEVTE 386 (465)
Q Consensus 379 l~~~~~~e 386 (465)
++..++++
T Consensus 125 ~~~~DvT~ 132 (262)
T PF14257_consen 125 ISSEDVTE 132 (262)
T ss_pred ccccchHH
Confidence 44455554
No 32
>PRK12739 elongation factor G; Reviewed
Probab=66.57 E-value=12 Score=41.87 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=56.4
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEe
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELL 379 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl 379 (465)
|++.|. +|.++.+.+++.|.+-...+..++-.+|...+.+.+|--.--.+...|+..|+|+|.+.+-
T Consensus 603 ~~~eI~--~p~~~~g~v~~~L~~RRg~i~~~~~~~~~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~ 669 (691)
T PRK12739 603 MKVEVV--TPEEYMGDVIGDLNRRRGQIQGMEARGGAQIVKAFVPLSEMFGYATDLRSATQGRATFSME 669 (691)
T ss_pred EEEEEE--EchHhhhhHHHHHHhcCCeEECccccCCcEEEEEEeCHHHhhccHHHHHhhccCceEEEEE
Confidence 677777 9999999999999887766777666556678999999988888999999999999988653
No 33
>PRK12740 elongation factor G; Reviewed
Probab=65.91 E-value=12 Score=41.28 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=54.7
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEe
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELL 379 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl 379 (465)
|++.|. +|.++.+.+.+.|.+....+..++-.+++..+.+.+|-..--.+...|++.|+|+|.+..-
T Consensus 585 ~~~eI~--~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~ 651 (668)
T PRK12740 585 MKVEVS--VPEEFVGDVIGDLSSRRGRILGMESRGGGDVVRAEVPLAEMFGYATDLRSLTQGRGSFSME 651 (668)
T ss_pred EEEEEE--echhhhhhHHHHHHhCCCeEeccccCCCCEEEEEEcCHHHhhchHHHHHHhcCCeEEEEEE
Confidence 677777 9999999999999887666666555344588999999888888889999999999987653
No 34
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=63.32 E-value=24 Score=39.27 Aligned_cols=67 Identities=21% Similarity=0.178 Sum_probs=52.5
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeee-eCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEe
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEW-SGGGLLLICLIDPGKYREIDELVRTETRGQGTLELL 379 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~-~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl 379 (465)
|++.|. +|.++.+.+.+.|.+.-..+..-+- ++|...+.+.+|---.-.+...+++.|+|.|.+...
T Consensus 397 ~~~~i~--vp~e~~G~v~~~l~~RrG~~~~~~~~~~~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~ 464 (594)
T TIGR01394 397 EELTID--VPEEHVGAVIEKLGKRKGEMVDMEPSGNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHV 464 (594)
T ss_pred EEEEEE--echHHHHHHHHHHHHhCCEEeccEECCCCEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEE
Confidence 566677 9999999999999986655665554 334566899999766667888899999999998764
No 35
>KOG0465|consensus
Probab=62.90 E-value=15 Score=41.78 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=52.8
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|.|.|+ +|.++.+.+-+-|.+-...+...+-+++-..+.+.+|=..-=....-|+..|+|+|++..
T Consensus 636 M~Vevt--~P~EfqG~Vi~~L~kR~a~I~~~d~~~~~~ti~A~VPL~~mfgYss~LRslTqGkgeftM 701 (721)
T KOG0465|consen 636 MNVEVT--TPEEFQGTVIGDLNKRKAQITGIDSSEDYKTIKAEVPLNEMFGYSSELRSLTQGKGEFTM 701 (721)
T ss_pred eeeEEe--cchhhhhhhhhhhhhcccEEecccCCCceEEEEecccHHHHhhhhhhhhhhhcCcceEEE
Confidence 889999 999999999998888766566656566777888888876555566778999999998754
No 36
>PRK07560 elongation factor EF-2; Reviewed
Probab=61.21 E-value=13 Score=41.94 Aligned_cols=66 Identities=9% Similarity=0.087 Sum_probs=53.9
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+.+++.|.+....|...+-.++...+.+.+|--.--.+...|+..|+|+|.+.+
T Consensus 628 ~~veI~--~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 693 (731)
T PRK07560 628 QKVDIN--VPQDYMGAVTREIQGRRGKILDMEQEGDMAIIEAEAPVAEMFGFAGEIRSATEGRALWST 693 (731)
T ss_pred EEEEEE--ecHHHhhHHHHHHHhcCCeeeeeecCCCcEEEEEEEehHHhcCCchHHHhhCcCCceEEE
Confidence 677777 999999999999988666676655444567788999988777888899999999998765
No 37
>PRK13351 elongation factor G; Reviewed
Probab=59.69 E-value=21 Score=39.68 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=52.9
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEE-EEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLL-LICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~-~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+.+.+.|.+-...|...+-.++... +...+|--.--.+...|+..|+|+|.+..
T Consensus 602 ~~~eI~--~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~ 668 (687)
T PRK13351 602 MELEIT--VPTEHVGDVLGDLSQRRGRIEGTEPRGDGEVLVKAEAPLAELFGYATRLRSMTKGRGSFTM 668 (687)
T ss_pred EEEEEE--echHhhhhHHHHHHhCCcEEeceecCCCcEEEEEEEECHHHhhChHHHHHhhcCCceEEEE
Confidence 677777 9999999999999886666666554333334 89999988888889999999999998765
No 38
>PRK00007 elongation factor G; Reviewed
Probab=58.14 E-value=21 Score=40.15 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=53.8
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+.+++.|.+.-..+...+-.++...+.+.+|--.--.+...|+..|+|+|.+.+
T Consensus 606 ~~~eI~--~p~~~~g~v~~~L~~RRg~i~~~~~~~~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~ 671 (693)
T PRK00007 606 MKVEVV--TPEEYMGDVIGDLNSRRGQIEGMEDRGGAKVIRAEVPLSEMFGYATDLRSMTQGRATYSM 671 (693)
T ss_pred EEEEEE--echhhhhhHHHHHHhCCCeEecccccCCcEEEEEEcCHHHhhccHHHHHhhcCCceEEEE
Confidence 677777 999999999999988665565544434567889999988888888999999999998765
No 39
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=57.94 E-value=22 Score=39.76 Aligned_cols=66 Identities=20% Similarity=0.180 Sum_probs=53.8
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+.+++.|.+-...|...+-.++...+.+.+|--.--.+...|+..|+|+|.+.+
T Consensus 603 ~~~eI~--~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~ 668 (689)
T TIGR00484 603 MKVEVE--VPEEYMGDVMGDLSSRRGIIEGMEARGNVQKIKAEVPLSEMFGYATDLRSFTQGRGTYSM 668 (689)
T ss_pred EEEEEE--ecHHHhHhHHHHHHhcCCeEecccccCCcEEEEEEeCHHHHhChHHHHHHhcCCceEEEE
Confidence 667777 999999999999988766676554434567888999987778888899999999998765
No 40
>PRK10218 GTP-binding protein; Provisional
Probab=57.75 E-value=28 Score=39.00 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=53.0
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeee-CCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEe
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWS-GGGLLLICLIDPGKYREIDELVRTETRGQGTLELL 379 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~-~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl 379 (465)
+++.|. +|.++.+.+.+.|.+.-..+..-+-. +|...+.+.+|---.-.+...+++.|+|.|.+...
T Consensus 401 ~~v~i~--vP~e~~G~V~~~l~~RrG~~~~m~~~~~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~ 468 (607)
T PRK10218 401 ENVTLD--VEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYST 468 (607)
T ss_pred EEEEEE--echhhHHHHHHHHHhcCCEEeccEECCCCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEE
Confidence 456677 99999999999999876656555543 44577899999877778888899999999998754
No 41
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=55.51 E-value=17 Score=41.85 Aligned_cols=66 Identities=15% Similarity=0.054 Sum_probs=54.3
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCe--EEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGG--LLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~--~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+.+++.|.+....|..++-.+|+ ..+...+|--.--.+...|+..|+|+|.+.+
T Consensus 730 ~~veI~--~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~ 797 (843)
T PLN00116 730 YLVEIQ--APEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 797 (843)
T ss_pred eEEEEE--ccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEE
Confidence 677777 99999999999999877677776653444 6789999988777888899999999998765
No 42
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=52.02 E-value=21 Score=33.11 Aligned_cols=73 Identities=19% Similarity=0.357 Sum_probs=47.3
Q ss_pred cccccccchhhhhhhccccccccccccCCHHHHHHhhCCCCHHHHHHHHhhcCccccCHHHHHHHHHHHHHHHHHHH
Q psy1329 178 LTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIV 254 (465)
Q Consensus 178 ~~~~~~~~~~~al~~~~v~~n~~kg~~A~~~dLkkaFgT~D~~ei~k~IL~kGelQ~s~~ER~~~iE~~~keI~~iI 254 (465)
|....++|.++++.+-.-......-+-.++++..+.+|+ +.+++++|+..- .+...+++....+..+.+..++
T Consensus 14 L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~--P~~iA~~i~~~~--~i~~~~~~~~~~~~~~~i~~~i 86 (181)
T PF08006_consen 14 LKKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGS--PKEIAREILAEY--SIKEEEKKKSWRNILRAILAII 86 (181)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCC--HHHHHHHHHHhh--hhhhhhccchhhhhHHHHHHHH
Confidence 445667788888877664443333355688999999997 889999999753 3334443444445555555544
No 43
>PTZ00416 elongation factor 2; Provisional
Probab=46.72 E-value=31 Score=39.86 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=53.9
Q ss_pred eEEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCe--EEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 310 QMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGG--LLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 310 ~m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~--~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
-|++.|. +|.++.+.+++.|.+-...|..++-.+|+ ..+...+|-----.+...|+..|+|+|.+.+
T Consensus 722 i~~veI~--~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~ 790 (836)
T PTZ00416 722 MFLVDIT--APEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQC 790 (836)
T ss_pred eEEEEEE--EcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEE
Confidence 3677777 99999999999998876667766654454 6788899887777788889999999999765
No 44
>PLN00064 photosystem II protein Psb27; Provisional
Probab=46.40 E-value=73 Score=30.79 Aligned_cols=74 Identities=7% Similarity=0.060 Sum_probs=61.0
Q ss_pred CHHHHHHHHhhcCccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHhhc--Cc-ccccCcCHHH
Q psy1329 218 DQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQI--HF-SVNVNKNSKQ 291 (465)
Q Consensus 218 D~~ei~k~IL~kGelQ~s~~ER~~~iE~~~keI~~iI~~~~inp~Tk~P~p~~~IE~al~~i--~~-~v~~~k~~k~ 291 (465)
|...++..+..-=.+...+..|...+.+.++.|.++|+++-=++...--=+-..+..||..+ || +..++.|.=+
T Consensus 69 DT~aVi~~lr~tI~L~~ddp~~a~a~aeaR~~iNdyvSrYRr~~~v~Gl~SFttMyTALNaLAGHY~SfgpnrPlPe 145 (166)
T PLN00064 69 ETKDVIGKVRSTINMDKTDPNVADAVAELRETSNSWVAKYRREKALLGRPSFRDMYSALNAVSGHYISFGPTAPIPA 145 (166)
T ss_pred HHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHHHHHHHHHHHHhhccCCCCCCcH
Confidence 55678888877778899999999999999999999999998888865555778889999997 88 6666766433
No 45
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=40.76 E-value=41 Score=38.08 Aligned_cols=66 Identities=9% Similarity=0.058 Sum_probs=52.0
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+.+++.|.+....|...+-.++...+...+|--.--.+...|++.|+|+|.+.+
T Consensus 626 ~~~ei~--~p~~~~g~v~~~L~~RRg~i~~~~~~~~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~ 691 (720)
T TIGR00490 626 QKVFIN--VPQDMMGAATREIQNRRGQILEMKQEGDMVTIIAKAPVAEMFGFAGAIRGATSGRCLWST 691 (720)
T ss_pred EEEEEE--ccHHHHhHHHHHHhhCCceeeeeccCCCcEEEEEEEehHHhcCCcHHHHhhCCCCceEEE
Confidence 677777 999999999999988766665444334456788888877667778889999999998765
No 46
>PF08890 XkdN: Phage XkdN-like protein; InterPro: IPR014986 This entry is represented by Clostridium phage phiCD119, XkdN. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 3KLU_A.
Probab=36.22 E-value=19 Score=32.69 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=23.3
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHhhcCccc
Q psy1329 205 ANKEDLKKAFNTEDQTEICKLILMKGELQ 233 (465)
Q Consensus 205 A~~~dLkkaFgT~D~~ei~k~IL~kGelQ 233 (465)
-+.++|+++||..+..++++.+|.-||+.
T Consensus 84 l~d~eLq~~ygv~~p~ell~kml~~GE~~ 112 (136)
T PF08890_consen 84 LKDKELQKSYGVMTPEELLKKMLLPGEYA 112 (136)
T ss_dssp TT-HHHHHHTT-S-HHHHHHHHTSHHHHH
T ss_pred CCCHHHHHHcCCCCHHHHHHHHcCHHHHH
Confidence 46679999999999999999999999864
No 47
>PF10739 DUF2550: Protein of unknown function (DUF2550); InterPro: IPR019675 The function of the proteins in this family is not known, though most members are annotated as either secreted or membrane proteins.
Probab=28.73 E-value=73 Score=29.04 Aligned_cols=28 Identities=14% Similarity=0.392 Sum_probs=24.0
Q ss_pred ceEEEEEEeecCeeEEEEeecchhHHhh
Q psy1329 14 TNVAIVRMKKAGKRFEIACYKNKVISWR 41 (465)
Q Consensus 14 tNvvIvRlKk~GkrFEIavyPnkv~~~R 41 (465)
.+++||++..+|..||+|.+|.....+.
T Consensus 92 ~~~~vv~~~~~~~~~ElAm~~~a~tgf~ 119 (129)
T PF10739_consen 92 PDAVVVECRSGGEEYELAMDPGALTGFV 119 (129)
T ss_pred CCeEEEEEEeCCcEEEEEeCcchHHHHH
Confidence 4789999999999999999998765543
No 48
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=26.95 E-value=36 Score=29.93 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=20.4
Q ss_pred ccCCCCC-----CcchHHHHHhhhhhee
Q psy1329 410 CINTETK-----RPFTVSMIEAGLKQIH 432 (465)
Q Consensus 410 ~~~~~~~-----~~~~~~~~~~~~~~~~ 432 (465)
-|||+|+ .||+.+.|.|+.+|++
T Consensus 41 ~id~~~k~IyELKPnNPr~ik~G~kQl~ 68 (89)
T PF15650_consen 41 FIDFETKIIYELKPNNPRAIKRGLKQLE 68 (89)
T ss_pred cccCCcceEEEecCCCHHHHHHHHHHHH
Confidence 5788887 6999999999999986
No 49
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=26.81 E-value=1.1e+02 Score=24.55 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=31.3
Q ss_pred HhhCCCCHHHHHHHHHccCccceeeccccccccceEEEEEEecCeeEEEEe
Q psy1329 74 KAFNTEDQTEICKLILMKDMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIAC 124 (465)
Q Consensus 74 kaFGTtD~~eIak~IL~KGMs~i~~P~nqi~ltnv~ivrlkk~gkrFEIac 124 (465)
=+|.++|.++..+.++.+|...+..|... ...-....=.-..|.++|+++
T Consensus 72 ~~~~v~d~~~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 72 LHLYVEDVDATFARAVAAGATSVMPPADQ-FWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred EEEEeCCHHHHHHHHHHCCCeEecCcccc-cccceEEEEECCCCCEEEEec
Confidence 37889999999999999997633333322 111122333445688888765
No 50
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=25.33 E-value=68 Score=29.56 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=37.1
Q ss_pred hccCceeeecccCcccchhhHHHhhhhccccccccccccccch--hhhhhhcc-cc-ccc
Q psy1329 144 LQTHTVFTNVSKGQAANKEDLKKAFNTNMLNISSLTSFREKDI--DEVLQTHT-VF-TNV 199 (465)
Q Consensus 144 Lq~~~VF~nvsKG~~~~~~~~~~a~n~~~~~~~~~~~~~~~~~--~~al~~~~-v~-~n~ 199 (465)
+....+|.|++.|...+.++|-.|+++..+.=--|.-|.+.-+ ++-|...+ |+ +||
T Consensus 117 mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH 176 (178)
T PF02826_consen 117 MKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLPADSPLWDLPNVILTPH 176 (178)
T ss_dssp STTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS
T ss_pred cccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCCCCChHHcCCCEEEeCc
Confidence 3445699999999999999999999998776555555555444 23455544 33 555
No 51
>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]
Probab=24.66 E-value=4.6e+02 Score=25.03 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=51.2
Q ss_pred EEEEEecCCChHHHHHHHHhhcCC-ceEEEEeeeeeecc---------CchhchhhHhhhhhhHHHHhhhcccCCCCCCc
Q psy1329 349 LLICLIDPGKYREIDELVRTETRG-QGTLELLNLKEVTE---------GEEERSSQIENQFKDIATIVSEKCINTETKRP 418 (465)
Q Consensus 349 ~~~~~I~PG~~rei~~~v~~~tkG-~g~~evl~~~~~~e---------~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 418 (465)
.+...++.+.-+++.+.+.+...+ ...+++-++..-.. |-+. .++|....+++-+.+...=+-++ .||
T Consensus 43 ~flGev~e~~~~~l~~~l~~i~~~~~f~i~l~g~g~F~~~~~~rvi~~~v~~-~~~L~~L~~~l~~~~~~~g~~~~-~r~ 120 (180)
T COG1514 43 KFLGEVDEDKADELIEALARIAAPEPFPITLDGAGSFPNPRRPRVIWVGVEE-TEELRALAEELERALARLGLRPE-ERP 120 (180)
T ss_pred EccCCcCchHHHHHHHHHHHhhcCCceEEEEeeEcccCCCCCCcEEEEcCCC-cHHHHHHHHHHHHHHHhcCCCCC-CCC
Confidence 334467778888899999999888 88888777654321 2222 46788888888888887777766 899
Q ss_pred chH
Q psy1329 419 FTV 421 (465)
Q Consensus 419 ~~~ 421 (465)
|+.
T Consensus 121 F~P 123 (180)
T COG1514 121 FVP 123 (180)
T ss_pred cCC
Confidence 975
No 52
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=23.29 E-value=1.3e+02 Score=34.72 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=64.1
Q ss_pred cCHHHHHHHHHHH-----hhhhcC-ceeeeEEEEEEEeeCchhHHHHHHHHHhhccccceeeee-CCe-EEEEEEecCCC
Q psy1329 287 KNSKQQALEVIPT-----LKQCMS-IERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWS-GGG-LLLICLIDPGK 358 (465)
Q Consensus 287 k~~k~Qalevik~-----L~~~ip-I~ra~m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~-~g~-~~~~~~I~PG~ 358 (465)
.+...|..-+.+. +.+.-| +=-.=|++.|+ +|.++.+.+.+.|.+.-..|...+-. ++. ..+.+.+|=.-
T Consensus 574 dss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~--~P~d~~G~V~~~l~~rRG~I~~~~~~~~~~~~~i~A~vPl~E 651 (697)
T COG0480 574 DSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEIT--TPEEYMGDVIGDLNSRRGQILGMEQRPGGGLDVIKAEVPLAE 651 (697)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEE--cchhhhchhHHhhhhcceEEeceeeccCCceEEEEEEechHH
Confidence 3566665544432 233445 33344788888 99999999999999755556544432 233 67888999877
Q ss_pred hHHHHHHHHhhcCCceEEEEee
Q psy1329 359 YREIDELVRTETRGQGTLELLN 380 (465)
Q Consensus 359 ~rei~~~v~~~tkG~g~~evl~ 380 (465)
.-.+...|+..|+|.|.....-
T Consensus 652 mfgya~dLRs~T~Gra~~~m~f 673 (697)
T COG0480 652 MFGYATDLRSATQGRASFSMEF 673 (697)
T ss_pred hccchhhhHhhcCCceeEEEEe
Confidence 7788888999999999987654
No 53
>PHA00743 helix-turn-helix protein
Probab=23.12 E-value=1.4e+02 Score=23.98 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHh
Q psy1329 242 QIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLK 277 (465)
Q Consensus 242 ~iE~~~keI~~iI~~~~inp~Tk~P~p~~~IE~al~ 277 (465)
++++--|++.++||+--||--|+. +|-..+|+|+-
T Consensus 3 eLD~~iReLLs~iheIKID~i~~~-~~k~kvekAl~ 37 (51)
T PHA00743 3 ELDEDVRELLSIIHEIKIDIITQS-YDKEKIEKAIF 37 (51)
T ss_pred hhHHHHHHHHHHHHHHhhhhhccc-CCHHHHHHHHH
Confidence 466778899999999999999998 99999999983
No 54
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=22.31 E-value=5e+02 Score=27.64 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=37.3
Q ss_pred CceeeecccCcccchhhHHHhhhhccccccccccccccch------hhhhhhcc-cc-cccccc
Q psy1329 147 HTVFTNVSKGQAANKEDLKKAFNTNMLNISSLTSFREKDI------DEVLQTHT-VF-TNVSKG 202 (465)
Q Consensus 147 ~~VF~nvsKG~~~~~~~~~~a~n~~~~~~~~~~~~~~~~~------~~al~~~~-v~-~n~~kg 202 (465)
..+|.|++.|...+-+.|..|+.+..|.=-.|.-|.+.-+ .+-|...+ |+ ++|.-|
T Consensus 232 ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~ 295 (409)
T PRK11790 232 GAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGG 295 (409)
T ss_pred CeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCC
Confidence 4689999999999999999999998765334444544322 22344443 44 666554
No 55
>PF13326 PSII_Pbs27: Photosystem II Pbs27; PDB: 2KND_A 2KMF_A 2Y6X_A.
Probab=22.09 E-value=86 Score=29.26 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=57.7
Q ss_pred CHHHHHHHHhhcCccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHhhc--CcccccCc-CHHHHHH
Q psy1329 218 DQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQI--HFSVNVNK-NSKQQAL 294 (465)
Q Consensus 218 D~~ei~k~IL~kGelQ~s~~ER~~~iE~~~keI~~iI~~~~inp~Tk~P~p~~~IE~al~~i--~~~v~~~k-~~k~Qal 294 (465)
|-.++++.+..-=++..++.+|....++.++.|.++|++.-=+|.-.-.-+-..+..||..+ ||+-.+++ |.=+...
T Consensus 52 dt~~vv~~lr~~l~l~~d~~~~~~~~~~ar~~in~~vs~YRr~~~v~g~~Sf~~m~tAln~LaghY~s~g~raPlP~k~k 131 (145)
T PF13326_consen 52 DTRAVVKTLREALELDKDDPNRAEAAAEARELINDYVSRYRRGPSVSGLPSFTTMYTALNALAGHYSSYGNRAPLPEKLK 131 (145)
T ss_dssp HHHHHHHHHHHHHCS-TT-TTHHHHHHHHHHHHHHHHCCCCCCHHCCTSHHHHHHHHHHHHHHHHCHHHTTS-S--HHHH
T ss_pred HHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhCCCCCcCCcchHHHHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 44566666666557778999999999999999999999987777655556778899999997 88887777 5444443
Q ss_pred H
Q psy1329 295 E 295 (465)
Q Consensus 295 e 295 (465)
+
T Consensus 132 ~ 132 (145)
T PF13326_consen 132 E 132 (145)
T ss_dssp H
T ss_pred H
Confidence 3
No 56
>KOG3480|consensus
Probab=21.83 E-value=1.5e+02 Score=26.22 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC
Q psy1329 244 ENQFKDIATIVSEKCINTETKR 265 (465)
Q Consensus 244 E~~~keI~~iI~~~~inp~Tk~ 265 (465)
-.+|+.+.+--++|||+|+=+.
T Consensus 25 ~d~fNrl~~tC~~KCI~~~y~E 46 (90)
T KOG3480|consen 25 SDMFNRLTNTCHKKCIPPRYKE 46 (90)
T ss_pred HHHHHHHHHHHHHHhCCccccc
Confidence 3899999999999999998443
No 57
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=20.90 E-value=7.1e+02 Score=23.48 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhhhhcC------------ceeeeEEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecC
Q psy1329 289 SKQQALEVIPTLKQCMS------------IERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDP 356 (465)
Q Consensus 289 ~k~Qalevik~L~~~ip------------I~ra~m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~P 356 (465)
.+.....+.|+|.+.++ +.|.-|-+.|. .+...-..+.+....+...+ -+++.+++.+.+.=+|
T Consensus 52 d~~~i~qi~kQl~Kli~V~~V~~~~~~~~v~rEl~LiKv~--~~~~~r~~i~~i~~~f~a~i--vdv~~~~~~ie~tG~~ 127 (157)
T TIGR00119 52 DDKVLEQITKQLNKLVDVIKVSDLTESAIVERELCLVKVS--APGEGRDEIIRLTNIFRGRI--VDVSPDSYTVEVTGDS 127 (157)
T ss_pred CHHHHHHHHHHHhcCccEEEEEecCCCcceeeEEEEEEEE--CCccCHHHHHHHHHHhCCEE--EEecCCEEEEEEcCCH
Confidence 36677777888865432 67888888887 66655555555555554322 3556777887777666
Q ss_pred CChHHHHHHHHh
Q psy1329 357 GKYREIDELVRT 368 (465)
Q Consensus 357 G~~rei~~~v~~ 368 (465)
+.-+.|.++++.
T Consensus 128 ~ki~~~~~~l~~ 139 (157)
T TIGR00119 128 DKIDAFLELLRP 139 (157)
T ss_pred HHHHHHHHHhhh
Confidence 666666666654
No 58
>PF08265 YL1_C: YL1 nuclear protein C-terminal domain; InterPro: IPR013272 This domain is found at the C terminus in proteins of the YL1 family []. These proteins have been shown to be DNA-binding and may be transcription factors []. This domain is also found in proteins that do not belong to the YL1 family.
Probab=20.10 E-value=53 Score=23.40 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=12.8
Q ss_pred HhcCCCCCCCCCcHHH
Q psy1329 256 EKCINTETKRPFTVSM 271 (465)
Q Consensus 256 ~~~inp~Tk~P~p~~~ 271 (465)
-++.||.||.||.-..
T Consensus 10 A~Y~DP~T~l~Y~n~~ 25 (30)
T PF08265_consen 10 ARYRDPKTGLPYANSE 25 (30)
T ss_pred ccccCCCCCCcccCHH
Confidence 4689999999997543
Done!