Query psy1329
Match_columns 465
No_of_seqs 244 out of 572
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 15:41:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kdo_A Ribosome maturation pro 100.0 1.2E-83 4.2E-88 621.5 15.2 250 92-390 1-250 (252)
2 2wbm_A MTHSBDS, ribosome matur 100.0 1.6E-79 5.6E-84 592.7 27.4 236 96-380 15-252 (252)
3 1t95_A Hypothetical protein AF 100.0 7.7E-76 2.6E-80 563.9 25.2 231 102-381 7-238 (240)
4 2kdo_A Ribosome maturation pro 100.0 1.5E-36 5.3E-41 293.4 10.0 146 1-176 2-147 (252)
5 2wbm_A MTHSBDS, ribosome matur 100.0 6E-35 2.1E-39 282.3 10.0 143 4-176 15-158 (252)
6 1t95_A Hypothetical protein AF 100.0 6.4E-32 2.2E-36 259.7 9.4 137 10-176 7-143 (240)
7 1nyn_A Hypothetical 12.0 kDa p 99.9 2.2E-23 7.5E-28 185.2 5.9 94 104-238 20-117 (131)
8 1nyn_A Hypothetical 12.0 kDa p 99.9 9.3E-23 3.2E-27 181.2 6.6 83 12-94 20-111 (131)
9 3lh2_S 4E10_1VI7A_S0_002_N (T8 94.1 0.077 2.6E-06 41.5 5.4 61 313-376 10-70 (76)
10 2cve_A Hypothetical protein TT 91.1 0.7 2.4E-05 43.3 8.4 62 312-376 129-190 (191)
11 1vi7_A Hypothetical protein YI 88.5 1.8 6E-05 41.4 9.0 65 311-378 140-204 (217)
12 1dar_A EF-G, elongation factor 79.4 4.1 0.00014 43.8 7.9 66 311-378 606-671 (691)
13 2dy1_A Elongation factor G; tr 79.3 3.7 0.00013 43.8 7.5 72 311-385 576-647 (665)
14 2xex_A Elongation factor G; GT 79.1 4 0.00014 43.8 7.8 73 311-386 605-677 (693)
15 2rdo_7 EF-G, elongation factor 76.5 4.1 0.00014 43.9 6.9 66 311-378 617-682 (704)
16 3e3x_A BIPA; MCSG,PSI2, struct 76.0 4.6 0.00016 40.7 6.6 67 311-379 128-195 (332)
17 4fn5_A EF-G 1, elongation fact 74.9 5.6 0.00019 42.7 7.4 66 311-378 623-688 (709)
18 3j25_A Tetracycline resistance 73.6 3 0.0001 44.3 4.9 66 311-378 539-604 (638)
19 2ywe_A GTP-binding protein LEP 70.1 7.2 0.00024 41.7 6.8 66 311-378 408-475 (600)
20 3cb4_D GTP-binding protein LEP 67.5 6.3 0.00021 42.0 5.7 66 311-378 404-470 (599)
21 1n0u_A EF-2, elongation factor 67.4 9.3 0.00032 42.1 7.2 66 311-378 729-796 (842)
22 2qwo_B Putative tyrosine-prote 34.4 19 0.00064 29.9 2.1 21 127-147 5-25 (92)
23 3ey7_A Biphenyl-2,3-DIOL 1,2-d 21.4 95 0.0033 23.8 4.0 53 75-127 77-132 (133)
No 1
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=100.00 E-value=1.2e-83 Score=621.49 Aligned_cols=250 Identities=64% Similarity=0.996 Sum_probs=245.3
Q ss_pred CccceeeccccccccceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccchhhHHHhhhhc
Q psy1329 92 DMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTN 171 (465)
Q Consensus 92 GMs~i~~P~nqi~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~~~~~~~a~n~~ 171 (465)
||++||||+||+|||||+|||||++|+||||+||||+|.+||+|.++||+||||+++||+|+|||
T Consensus 1 ~m~~i~~P~~qi~ltnv~ivr~k~~g~~FEI~v~~~~v~~wr~g~~~~l~eVl~~~~VF~n~skG--------------- 65 (252)
T 2kdo_A 1 GHMSIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKG--------------- 65 (252)
T ss_dssp CCSCSCCCCCSSCTTSEEEEEEECSSCEEEEEEESSSGGGGGTTCCSCSSTTCCCCCEEEETTTT---------------
T ss_pred CCCCccCCCCcEEecceEEEEEEcCCcEEEEEECHHHHHHHHcCCCCCHHHHhCcceeeecCccc---------------
Confidence 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccchhhhhhhccccccccccccCCHHHHHHhhCCCCHHHHHHHHhhcCccccCHHHHHHHHHHHHHHHH
Q psy1329 172 MLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIA 251 (465)
Q Consensus 172 ~~~~~~~~~~~~~~~~~al~~~~v~~n~~kg~~A~~~dLkkaFgT~D~~ei~k~IL~kGelQ~s~~ER~~~iE~~~keI~ 251 (465)
++|++++|.++|||+|.++||++||++||+|+|++||+.++|+++|||+
T Consensus 66 -------------------------------~~As~~~L~~~FGT~d~~eii~~IL~kGe~Q~s~~eR~~~~e~k~r~Ii 114 (252)
T 2kdo_A 66 -------------------------------QVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIA 114 (252)
T ss_dssp -------------------------------EEECHHHHHHHTSCSCHHHHHHHHHHSSEECCCSSSSSSSCTTHHHHHH
T ss_pred -------------------------------ccCCHHHHHHhhCCCCHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCcHHHHHHHHhhcCcccccCcCHHHHHHHHHHHhhhhcCceeeeEEEEEEEeeCchhHHHHHHHH
Q psy1329 252 TIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKL 331 (465)
Q Consensus 252 ~iI~~~~inp~Tk~P~p~~~IE~al~~i~~~v~~~k~~k~Qalevik~L~~~ipI~ra~m~v~v~~~ip~~~~~~~~~~l 331 (465)
++|+++||||+|++|||++|||+||+++||+|||+||+|+||+++||+|+++|||+||+|+++|+ +|.++++++++.|
T Consensus 115 ~~Ia~~~VnP~T~~P~p~~~IE~Am~e~~~~vdp~ksak~Qalevik~L~~~iPI~ra~m~l~v~--vp~~~~~~~~~~l 192 (252)
T 2kdo_A 115 TIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFI--LPVNEGKKLKEKL 192 (252)
T ss_dssp HHHHTTEECCTTSCTTCHHHHHHHHHHHSSCSSTTCCHHHHHHHHHHHHHHHSCCEEECCCEEEE--CBHHHHHHHTTTH
T ss_pred HHHHHhccCCCCCCCCCHHHHHHHHHhCCcccCCCCCHHHHHHHHHHHhhhhCCeeeeeEEEEEE--EcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEeeeeeeccCchh
Q psy1329 332 VKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEE 390 (465)
Q Consensus 332 ~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl~~~~~~e~~e~ 390 (465)
.+++..+++|+|.++ |.++|+||||+||+|+++|+++|+|+|+++||+++.+.||++.
T Consensus 193 ~~~~~~v~~ee~~~~-~~~v~~I~pg~~~~~~~~v~~~tkG~~~~evl~~~~~~~~~~~ 250 (252)
T 2kdo_A 193 KPLIKVIESEDYGQQ-LEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDEK 250 (252)
T ss_dssp HHHTCEEEEECCSSB-CCEEECCCGGGHHHHHHHHHHHTTTTSEEEECCCSSSCCCBSC
T ss_pred HHhhCcceeeeccCC-eEEEEEECCcchHHHHHHHHHhcCCCEEEEEEEEeeeecCccc
Confidence 999667999999766 9999999999999999999999999999999999999998864
No 2
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.6e-79 Score=592.73 Aligned_cols=236 Identities=21% Similarity=0.378 Sum_probs=228.2
Q ss_pred eeeccccccccceEEEEEEecCeeEEEEechhhHHHhhcC-CCCChhhhhccCceeeecccCcccchhhHHHhhhhcccc
Q psy1329 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNN-IEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNMLN 174 (465)
Q Consensus 96 i~~P~nqi~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g-~e~dideVLq~~~VF~nvsKG~~~~~~~~~~a~n~~~~~ 174 (465)
++||+|||+||||+|||||++|+||||+||||+|.+||+| .++||+||||+++||+|+|||
T Consensus 15 ~~qP~~qi~ltnv~ivr~k~~g~~FEI~v~p~~v~~wr~g~~~~~L~eVl~~~~VF~n~skG------------------ 76 (252)
T 2wbm_A 15 VPRGSHMVSLEDAVIARLESHGERFEVLVDPDLAAEFRREDSDVSVEDVLAVQEVFRDARKG------------------ 76 (252)
T ss_dssp ----CCCCCTTTCEEEEEEETTEEEEEEECHHHHHHHHSTTCCCCHHHHBSSSCCEEETTTT------------------
T ss_pred ccCCCCcEEecceEEEEEecCCcEEEEEECHHHHHHHHcCCCCCCHHHHhccceeeecCccc------------------
Confidence 7999999999999999999999999999999999999999 999999999999999999999
Q ss_pred ccccccccccchhhhhhhccccccccccccCCHHHHHHhhCCCCHHHHHHHHhhcCccccCHHHHHHHHHHHHHHHHHHH
Q psy1329 175 ISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIV 254 (465)
Q Consensus 175 ~~~~~~~~~~~~~~al~~~~v~~n~~kg~~A~~~dLkkaFgT~D~~ei~k~IL~kGelQ~s~~ER~~~iE~~~keI~~iI 254 (465)
++|++++|.++|||+|.++||++||++||+|+|++||+.++|+++|||+++|
T Consensus 77 ----------------------------~~As~~~L~~~FGT~d~~eii~~IL~kGe~Q~s~~eR~~~lE~k~r~Ii~~I 128 (252)
T 2wbm_A 77 ----------------------------DKASEEAMRKVFETADPLEVTPVILRRGTIQLTAEQRRQMIEDKRLKIINKI 128 (252)
T ss_dssp ----------------------------EECCHHHHHHHHSCCCHHHHHHHHHHHSEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------ccCCHHHHHHhhCCCCHHHHHHHHHhcCCcccCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCcHHHHHHHHhhcCcccccCcCHHHHHHHHHHHhhhhcCceeeeEEEEEEEeeCchhHHHHHHHHHhh
Q psy1329 255 SEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKC 334 (465)
Q Consensus 255 ~~~~inp~Tk~P~p~~~IE~al~~i~~~v~~~k~~k~Qalevik~L~~~ipI~ra~m~v~v~~~ip~~~~~~~~~~l~~~ 334 (465)
+++||||+|++|||++|||+||+++||+|||+||+|+||+++||+|+++|||+||+|+++|. +|.++++++++.|.++
T Consensus 129 a~~~VnP~T~~P~p~~~IE~Am~e~~~~Vdp~ksak~Qalevik~L~~~iPI~ra~m~l~v~--ip~~~~~~~~~~l~~~ 206 (252)
T 2wbm_A 129 AREAINPQNGLPHPPKRIEKAMEEARVHVDPFKTVDEQVNIVLKAIRTKIPIKFEKVRVAIK--IPGEMAGSAYGVISNF 206 (252)
T ss_dssp HHHEECTTTCCCCCHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHTTTSCCEECEEEEEEE--ECGGGHHHHHHHHHHH
T ss_pred HHhccCCCCCCcCCHHHHHHHHHhCCcccCCCCCHHHHHHHHHHHHhhhcCeeEeeEEEEEE--EcHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ccccceeee-eCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEee
Q psy1329 335 ATSVENEEW-SGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLN 380 (465)
Q Consensus 335 ~~~ve~ee~-~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl~ 380 (465)
+ .+++|+| +||+|.++|+||||+||+|+++|+++|+|+|+++||.
T Consensus 207 ~-~v~~ee~~~dgs~~~v~~i~pg~~~~~~~~v~~~tkG~~~~~vl~ 252 (252)
T 2wbm_A 207 G-KITNEEWQNDGSWIAVVEIPGGLQDSFYQKLSELTGGNVETRLIK 252 (252)
T ss_dssp C-EEEEEEECTTSCEEEEEEEEGGGHHHHHHHHHHHTTTCCEEEECC
T ss_pred C-eeeeecccCCCcEEEEEEECCccHHHHHHHHHHhcCCeEEEEEcC
Confidence 8 5999999 4588999999999999999999999999999999984
No 3
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=100.00 E-value=7.7e-76 Score=563.90 Aligned_cols=231 Identities=23% Similarity=0.456 Sum_probs=222.9
Q ss_pred cccccceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccchhhHHHhhhhccccccccccc
Q psy1329 102 QIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNMLNISSLTSF 181 (465)
Q Consensus 102 qi~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~~~~~~~a~n~~~~~~~~~~~~ 181 (465)
.+.||||+|||||++|+||||+||||+|.+||+|.++||+||||+++||+|+|||
T Consensus 7 ~~~~tnv~ivR~k~~g~rFEI~v~p~~v~~wr~g~~~~L~eVL~~~~VF~n~skG------------------------- 61 (240)
T 1t95_A 7 HVSLDKAVIARLRKGGEEFEVLVDPYLARDLKEGKEVNFEDLLAAEEVFKDAKKG------------------------- 61 (240)
T ss_dssp ----CCCEEEEEEETTEEEEEEECHHHHHHHHTTCCCCHHHHBSSSCCEEETTTT-------------------------
T ss_pred ccccceeEEEEEecCCcEEEEEECHHHHHHHHcCCCCCHHHHhccceeeecCccc-------------------------
Confidence 4689999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhccccccccccccCCHHHHHHhhCCCCHHHHHHHHhhcCccccCHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1329 182 REKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINT 261 (465)
Q Consensus 182 ~~~~~~~al~~~~v~~n~~kg~~A~~~dLkkaFgT~D~~ei~k~IL~kGelQ~s~~ER~~~iE~~~keI~~iI~~~~inp 261 (465)
++|++++|.++|||+|.++||++||++||+|+|++||+.++|+++|||+++|+++||||
T Consensus 62 ---------------------~~As~~~L~~~FGT~d~~eIi~~IL~kGe~Q~s~~eR~~~~e~k~r~Ii~~Ia~~~VnP 120 (240)
T 1t95_A 62 ---------------------ERASVDELRKIFGTDDVFEIARKIILEGEVQITAEQRREMLEAKRKQIINFISRNTIDP 120 (240)
T ss_dssp ---------------------EECCHHHHHHHHSCCCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHEEBT
T ss_pred ---------------------CcCCHHHHHHhhCCCCHHHHHHHHHhcCCcccCchHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHhhcCcccccCcCHHHHHHHHHHHhhhhcCceeeeEEEEEEEeeCchhHHHHHHHHHhhcccccee
Q psy1329 262 ETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENE 341 (465)
Q Consensus 262 ~Tk~P~p~~~IE~al~~i~~~v~~~k~~k~Qalevik~L~~~ipI~ra~m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~e 341 (465)
+|++|||+.|||+||+++||+|||++|+|+||+++||+|+++|||+||+|+++|. +|.++++++++.|.+++. +++|
T Consensus 121 ~T~~P~p~~~IE~Am~e~~~~vdp~ksak~Qa~evik~L~~~iPI~ra~m~~~v~--vp~~~~~~~~~~l~~~~~-v~~e 197 (240)
T 1t95_A 121 RTNAPHPPSRIERALEEAKVHIDIFKSVEAQVKDIVKALKPILPLKFEEMEIAIK--IPPEHTGRAISALYNFGG-VTRE 197 (240)
T ss_dssp TTTBCCCHHHHHHHHHHTTCCCCTTSCSTTTHHHHHHHHTTTSCCEECEEEEEEE--ECGGGHHHHHHHHHHHCC-EEEE
T ss_pred CCCCCCCHHHHHHHHHHcCcccCCCCCHHHHHHHHHHHHHHhCCceeeEEEEEEE--EcHHHHHHHHHHHHhhCe-eeee
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999994 9999
Q ss_pred ee-eCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEeee
Q psy1329 342 EW-SGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNL 381 (465)
Q Consensus 342 e~-~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl~~ 381 (465)
+| +||+|.++|+||||+||+|+++|+++|+|+|+++||+-
T Consensus 198 e~~~dgs~~~v~~Ippg~~~~~~~~l~~~tkG~~~~~vl~~ 238 (240)
T 1t95_A 198 EWQRDGSWICVMRIPSGMYGDLMDLLGKVAKGEALTKVLRR 238 (240)
T ss_dssp EECTTSCEEEEEEEEGGGHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cccCCCcEEEEEEECCccHHHHHHHHHHhcCCeEEEEEecc
Confidence 99 45889999999999999999999999999999999863
No 4
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=100.00 E-value=1.5e-36 Score=293.42 Aligned_cols=146 Identities=50% Similarity=0.755 Sum_probs=131.5
Q ss_pred CCCccCCCcceecceEEEEEEeecCeeEEEEeecchhHHhhccCcCCchhhhcccceeeeccccccCCHHHHHHhhCCCC
Q psy1329 1 MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTED 80 (465)
Q Consensus 1 m~~i~~P~nqi~LtNvvIvRlKk~GkrFEIavyPnkv~~~R~G~e~dIdeVLq~d~VF~nvsKGe~As~edL~kaFGTtD 80 (465)
|++||||+||++|||++|||||++|+||||+||||+|.+||+|.++||++||+++.||+|++||++||+++|.++|||+|
T Consensus 2 m~~i~~P~~qi~ltnv~ivr~k~~g~~FEI~v~~~~v~~wr~g~~~~l~eVl~~~~VF~n~skG~~As~~~L~~~FGT~d 81 (252)
T 2kdo_A 2 HMSIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDD 81 (252)
T ss_dssp CSCSCCCCCSSCTTSEEEEEEECSSCEEEEEEESSSGGGGGTTCCSCSSTTCCCCCEEEETTTTEEECHHHHHHHTSCSC
T ss_pred CCCccCCCCcEEecceEEEEEEcCCcEEEEEECHHHHHHHHcCCCCCHHHHhCcceeeecCcccccCCHHHHHHhhCCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCccceeeccccccccceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccc
Q psy1329 81 QTEICKLILMKDMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAAN 160 (465)
Q Consensus 81 ~~eIak~IL~KGMs~i~~P~nqi~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~ 160 (465)
.++||++||++|.. |-+.. .|. . -.+...++|.+++... |.|..++.++|
T Consensus 82 ~~eii~~IL~kGe~---Q~s~~-----------eR~---~-----------~~e~k~r~Ii~~Ia~~--~VnP~T~~P~p 131 (252)
T 2kdo_A 82 QTEICKQILTKGEV---QVSDK-----------ERH---T-----------QLEQMFRDIATIVADK--CVNPETKRPYT 131 (252)
T ss_dssp HHHHHHHHHHSSEE---CCCSS-----------SSS---S-----------SCTTHHHHHHHHHHTT--EECCTTSCTTC
T ss_pred HHHHHHHHHhcCCc---ccChH-----------HHH---H-----------HHHHHHHHHHHHHHHh--ccCCCCCCCCC
Confidence 99999999999976 22211 110 0 1345678899999999 88999999999
Q ss_pred hhhHHHhhhhcccccc
Q psy1329 161 KEDLKKAFNTNMLNIS 176 (465)
Q Consensus 161 ~~~~~~a~n~~~~~~~ 176 (465)
..+|++||+++.++|+
T Consensus 132 ~~~IE~Am~e~~~~vd 147 (252)
T 2kdo_A 132 VILIERAMKDIHYSVK 147 (252)
T ss_dssp HHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHhCCcccC
Confidence 9999999999988887
No 5
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=6e-35 Score=282.34 Aligned_cols=143 Identities=20% Similarity=0.353 Sum_probs=125.2
Q ss_pred ccCCCcceecceEEEEEEeecCeeEEEEeecchhHHhhcc-CcCCchhhhcccceeeeccccccCCHHHHHHhhCCCCHH
Q psy1329 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNN-IEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQT 82 (465)
Q Consensus 4 i~~P~nqi~LtNvvIvRlKk~GkrFEIavyPnkv~~~R~G-~e~dIdeVLq~d~VF~nvsKGe~As~edL~kaFGTtD~~ 82 (465)
++||+||++|||++|||||++|+||||+||||+|.+||+| .++||+|||+++.||+|++||++||+++|.++|||+|.+
T Consensus 15 ~~qP~~qi~ltnv~ivr~k~~g~~FEI~v~p~~v~~wr~g~~~~~L~eVl~~~~VF~n~skG~~As~~~L~~~FGT~d~~ 94 (252)
T 2wbm_A 15 VPRGSHMVSLEDAVIARLESHGERFEVLVDPDLAAEFRREDSDVSVEDVLAVQEVFRDARKGDKASEEAMRKVFETADPL 94 (252)
T ss_dssp ----CCCCCTTTCEEEEEEETTEEEEEEECHHHHHHHHSTTCCCCHHHHBSSSCCEEETTTTEECCHHHHHHHHSCCCHH
T ss_pred ccCCCCcEEecceEEEEEecCCcEEEEEECHHHHHHHHcCCCCCCHHHHhccceeeecCcccccCCHHHHHHhhCCCCHH
Confidence 6899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCccceeeccccccccceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccchh
Q psy1329 83 EICKLILMKDMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKE 162 (465)
Q Consensus 83 eIak~IL~KGMs~i~~P~nqi~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~~~ 162 (465)
+||++||++|.. |-+. .-=..-.+...++|.+++... |.|..++.++|..
T Consensus 95 eii~~IL~kGe~---Q~s~-------------------------~eR~~~lE~k~r~Ii~~Ia~~--~VnP~T~~P~p~~ 144 (252)
T 2wbm_A 95 EVTPVILRRGTI---QLTA-------------------------EQRRQMIEDKRLKIINKIARE--AINPQNGLPHPPK 144 (252)
T ss_dssp HHHHHHHHHSEE---ECCH-------------------------HHHHHHHHHHHHHHHHHHHHH--EECTTTCCCCCHH
T ss_pred HHHHHHHhcCCc---ccCc-------------------------hhHHHHHHHHHHHHHHHHHHh--ccCCCCCCcCCHH
Confidence 999999999965 1111 101112345678999999999 8899999999999
Q ss_pred hHHHhhhhcccccc
Q psy1329 163 DLKKAFNTNMLNIS 176 (465)
Q Consensus 163 ~~~~a~n~~~~~~~ 176 (465)
+|++||+++.++|+
T Consensus 145 ~IE~Am~e~~~~Vd 158 (252)
T 2wbm_A 145 RIEKAMEEARVHVD 158 (252)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHhCCcccC
Confidence 99999999998887
No 6
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=99.97 E-value=6.4e-32 Score=259.73 Aligned_cols=137 Identities=19% Similarity=0.352 Sum_probs=119.2
Q ss_pred ceecceEEEEEEeecCeeEEEEeecchhHHhhccCcCCchhhhcccceeeeccccccCCHHHHHHhhCCCCHHHHHHHHH
Q psy1329 10 QIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLIL 89 (465)
Q Consensus 10 qi~LtNvvIvRlKk~GkrFEIavyPnkv~~~R~G~e~dIdeVLq~d~VF~nvsKGe~As~edL~kaFGTtD~~eIak~IL 89 (465)
-++|||++|||||++|+||||+||||+|.+||+|.++||+||||++.||+|++||++||+++|.++|||+|.++||+.||
T Consensus 7 ~~~~tnv~ivR~k~~g~rFEI~v~p~~v~~wr~g~~~~L~eVL~~~~VF~n~skG~~As~~~L~~~FGT~d~~eIi~~IL 86 (240)
T 1t95_A 7 HVSLDKAVIARLRKGGEEFEVLVDPYLARDLKEGKEVNFEDLLAAEEVFKDAKKGERASVDELRKIFGTDDVFEIARKII 86 (240)
T ss_dssp ----CCCEEEEEEETTEEEEEEECHHHHHHHHTTCCCCHHHHBSSSCCEEETTTTEECCHHHHHHHHSCCCHHHHHHHHH
T ss_pred ccccceeEEEEEecCCcEEEEEECHHHHHHHHcCCCCCHHHHhccceeeecCcccCcCCHHHHHHhhCCCCHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccceeeccccccccceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccchhhHHHhhh
Q psy1329 90 MKDMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 169 (465)
Q Consensus 90 ~KGMs~i~~P~nqi~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~~~~~~~a~n 169 (465)
++|.. |-+. -.| ..-.+...++|.+++... |.|..+|.++|..+|++||+
T Consensus 87 ~kGe~---Q~s~-----------~eR--------------~~~~e~k~r~Ii~~Ia~~--~VnP~T~~P~p~~~IE~Am~ 136 (240)
T 1t95_A 87 LEGEV---QITA-----------EQR--------------REMLEAKRKQIINFISRN--TIDPRTNAPHPPSRIERALE 136 (240)
T ss_dssp HHSEE---CCCH-----------HHH--------------HHHHHHHHHHHHHHHHHH--EEBTTTTBCCCHHHHHHHHH
T ss_pred hcCCc---ccCc-----------hHH--------------HHHHHHHHHHHHHHHHHh--ccCCCCCCCCCHHHHHHHHH
Confidence 99965 2111 001 112345678999999999 88999999999999999999
Q ss_pred hcccccc
Q psy1329 170 TNMLNIS 176 (465)
Q Consensus 170 ~~~~~~~ 176 (465)
++.++|+
T Consensus 137 e~~~~vd 143 (240)
T 1t95_A 137 EAKVHID 143 (240)
T ss_dssp HTTCCCC
T ss_pred HcCcccC
Confidence 9998887
No 7
>1nyn_A Hypothetical 12.0 kDa protein in NAM8-GAR1 intergenic region; hypothetical protein, structural genomics, PSI; NMR {Saccharomyces cerevisiae} SCOP: d.235.1.1
Probab=99.88 E-value=2.2e-23 Score=185.22 Aligned_cols=94 Identities=20% Similarity=0.259 Sum_probs=89.7
Q ss_pred cccceEEEEEEecCeeEEEEe-chhhHHHhhc-CCCCChhhhhccCceeeecc-cCcccchhhHHHhhhhcccccccccc
Q psy1329 104 RMTNVAIVRMKKAGKRFEIAC-YKNKVISWRN-NIEKDIDEVLQTHTVFTNVS-KGQAANKEDLKKAFNTNMLNISSLTS 180 (465)
Q Consensus 104 ~ltnv~ivrlkk~gkrFEIac-y~nkv~~~R~-g~e~dideVLq~~~VF~nvs-KG~~~~~~~~~~a~n~~~~~~~~~~~ 180 (465)
.|.++++||||.+|.+|||.+ +||++.+||+ |.++||++||++++||+|++ ||
T Consensus 20 ~m~~~vka~yk~~~e~FeI~V~Dpd~~~kwr~~g~~i~L~eVv~~~~VF~n~~gkG------------------------ 75 (131)
T 1nyn_A 20 HMSTVTKYFYKGENTDLIVFAASEELVDEYLKNPSIGKLSEVVELFEVFTPQDGRG------------------------ 75 (131)
T ss_dssp -CCCCEEEEEECSSSEEEEEESCHHHHHHHHHSCCHHHHHHHCSSCCCEECCSSSC------------------------
T ss_pred CCCcceEEEEecCCCeEEEEECCHHHHHHHHhCCCCCCHHHHhchheeeecCCCCc------------------------
Confidence 378999999999999999999 9999999997 99999999999999999999 99
Q ss_pred ccccchhhhhhhccccccccccccCCHHHHHHhhCC-CCHHHHHHHHhhcCccccCHHH
Q psy1329 181 FREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNT-EDQTEICKLILMKGELQISDKE 238 (465)
Q Consensus 181 ~~~~~~~~al~~~~v~~n~~kg~~A~~~dLkkaFgT-~D~~ei~k~IL~kGelQ~s~~E 238 (465)
++|..++|++++|+++||| +|.++||++||++||+|+|+++
T Consensus 76 -----------------~qG~ld~ASk~~Le~~FGT~~d~~eIi~~IL~kGeiQ~t~~q 117 (131)
T 1nyn_A 76 -----------------AEGELGAASKAQVENEFGKGKKIEEVIDLILRNGKPNSTTSS 117 (131)
T ss_dssp -----------------SSSCCEECCHHHHHHHHCSSCCSHHHHHHHHHSCBCCCCCCS
T ss_pred -----------------cccccCCCCHHHHHHhcCCCCCHHHHHHHHHhcCCcccchhh
Confidence 7888899999999999999 9999999999999999999864
No 8
>1nyn_A Hypothetical 12.0 kDa protein in NAM8-GAR1 intergenic region; hypothetical protein, structural genomics, PSI; NMR {Saccharomyces cerevisiae} SCOP: d.235.1.1
Probab=99.87 E-value=9.3e-23 Score=181.20 Aligned_cols=83 Identities=22% Similarity=0.285 Sum_probs=79.9
Q ss_pred ecceEEEEEEeecCeeEEEEe-ecchhHHhhc-cCcCCchhhhcccceeeecc-cc-----ccCCHHHHHHhhCC-CCHH
Q psy1329 12 RMTNVAIVRMKKAGKRFEIAC-YKNKVISWRN-NIEKDIDEVLQTHTVFTNVS-KG-----QAANKEDLKKAFNT-EDQT 82 (465)
Q Consensus 12 ~LtNvvIvRlKk~GkrFEIav-yPnkv~~~R~-G~e~dIdeVLq~d~VF~nvs-KG-----e~As~edL~kaFGT-tD~~ 82 (465)
+|+++++||||.+|++|||+| |||+|.+||+ |.++||++||+++.||+|++ || ++||+++|+++||| +|.+
T Consensus 20 ~m~~~vka~yk~~~e~FeI~V~Dpd~~~kwr~~g~~i~L~eVv~~~~VF~n~~gkG~qG~ld~ASk~~Le~~FGT~~d~~ 99 (131)
T 1nyn_A 20 HMSTVTKYFYKGENTDLIVFAASEELVDEYLKNPSIGKLSEVVELFEVFTPQDGRGAEGELGAASKAQVENEFGKGKKIE 99 (131)
T ss_dssp -CCCCEEEEEECSSSEEEEEESCHHHHHHHHHSCCHHHHHHHCSSCCCEECCSSSCSSSCCEECCHHHHHHHHCSSCCSH
T ss_pred CCCcceEEEEecCCCeEEEEECCHHHHHHHHhCCCCCCHHHHhchheeeecCCCCccccccCCCCHHHHHHhcCCCCCHH
Confidence 367999999999999999999 9999999998 88999999999999999999 99 79999999999999 9999
Q ss_pred HHHHHHHccCcc
Q psy1329 83 EICKLILMKDMS 94 (465)
Q Consensus 83 eIak~IL~KGMs 94 (465)
+||++||++|..
T Consensus 100 eIi~~IL~kGei 111 (131)
T 1nyn_A 100 EVIDLILRNGKP 111 (131)
T ss_dssp HHHHHHHHSCBC
T ss_pred HHHHHHHhcCCc
Confidence 999999999976
No 9
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=94.10 E-value=0.077 Score=41.54 Aligned_cols=61 Identities=16% Similarity=0.106 Sum_probs=51.6
Q ss_pred EEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEE
Q psy1329 313 VRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTL 376 (465)
Q Consensus 313 v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ 376 (465)
.++. +|-...+++...|...+-.+.+.+|+ ....+.+.+|++....|.+.|...|+|++.+
T Consensus 10 ~~l~--~dY~~~g~v~~~L~~~~~~I~~~~Y~-~~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 10 YTLQ--ANWFDITGILWLLGQVDGKIINSDVQ-AFVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEE--ECHHHHHHHHHHHHHTTCEEEEEEEE-EEEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred EEEE--EcccCHHHHHHHHHHCCCEEEccccc-CeEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 3455 78888999999999998778999994 4699999999999999999999999998765
No 10
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=91.15 E-value=0.7 Score=43.32 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=54.7
Q ss_pred EEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEE
Q psy1329 312 RVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTL 376 (465)
Q Consensus 312 ~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ 376 (465)
.+.+. +|-...+++...|.... .+.+++|++++..+.+.+|++....|.+.+...|.|+..+
T Consensus 129 ~~~~~--~~Y~~~~~v~~~l~~~~-~i~~~~y~~~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 129 GLAFL--VPFAEVGRVYALLEARA-LKAEETYTPEGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp EEEEE--ECGGGHHHHHHHHHHTT-CCEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred EEEEE--EchhhHHHHHHHHHHcC-ceeccEEcCCeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 44455 88889999999999999 8999999766699999999999999999999999999865
No 11
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=88.55 E-value=1.8 Score=41.36 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=55.8
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
.++.+. +|-...+++...|.+..-.+.+++|+ +...+.+.+|++....|.+.+...|.|+..++.
T Consensus 140 ~~~~i~--~~Y~~~~~v~~~l~~~~~~i~~~~y~-~~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~~~ 204 (217)
T 1vi7_A 140 TEYTLQ--CEYHQLTGIEALLGQCDGKIINSDYQ-AFVLLRVALPAAKVAEFSAKLADFSRGSLQLLA 204 (217)
T ss_dssp EEEEEE--ECTTTHHHHHHHHHHTTCEEEEEEES-SSEEEEEEECSSTHHHHHHHHHHHHTTCCCCEE
T ss_pred eEEEEE--EccchHHHHHHHHHHCCCEEEceEec-CCEEEEEEECHHHHHHHHHHHHHHhCCeEEEEe
Confidence 344455 88889999999999988778889995 569999999999999999999999999987654
No 12
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=79.40 E-value=4.1 Score=43.80 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=57.2
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+.+++.|.+....+...+..+|...+...+|-.---.+...|++.|+|+|.+..
T Consensus 606 ~~~~i~--~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 671 (691)
T 1dar_A 606 MRVEVT--TPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVM 671 (691)
T ss_dssp EEEEEE--ECTTTTTHHHHHHHHTTCCEEEEEEETTEEEEEEEEETTTSSSHHHHHHHHTTTCCEEEE
T ss_pred EEEEEE--EcHHHHhHHHHHHHHCCceeecceecCCeEEEEEEecHHHHhhHHHHHHHhcCCceEEEE
Confidence 667777 999999999999998776788877767788899999988777889999999999998874
No 13
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=79.33 E-value=3.7 Score=43.82 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=59.6
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEeeeeeec
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVT 385 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl~~~~~~ 385 (465)
|++.|. +|.++.+.+++.|.+....+...+..+|...+.+.+|-.---.+...|++.|+|.|.+.. ......
T Consensus 576 ~~~~i~--~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~a~~P~~e~~~~~~~Lrs~T~G~~~~~~-~f~~y~ 647 (665)
T 2dy1_A 576 YRLKVL--APQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYKALPGLTGGAGAYTL-EFSHYA 647 (665)
T ss_dssp EEEEEE--EEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEEEGGGCTTHHHHHHHHHTTCCEEEE-EEEEEE
T ss_pred EEEEEE--ECHHHHHHHHHHHHHCCCEEeCcEecCCeEEEEEEECHHHHhhHHHHhHhhcCCcEEEEE-EeCcee
Confidence 667777 999999999999998776788877767788999999988888899999999999998875 334333
No 14
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=79.11 E-value=4 Score=43.83 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=59.5
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEeeeeeecc
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTE 386 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl~~~~~~e 386 (465)
|++.|. +|.++.+.+++.|.+....+...+..+|...+...+|-.---.+...|++.|+|+|.+.. ......+
T Consensus 605 ~~~~i~--~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~-~f~~y~~ 677 (693)
T 2xex_A 605 MKVTIE--MPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTM-YFDHYAE 677 (693)
T ss_dssp EEEEEE--EEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEE-EEEEEEE
T ss_pred EEEEEE--EcHHHHHHHHHHHHhCCcEeecccccCCeEEEEEEeCHHHHHhHHHHhHHhcCCceEEEE-EeCcceE
Confidence 667777 999999999999999776787777767788899999987777889999999999999874 3444433
No 15
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=76.50 E-value=4.1 Score=43.90 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=56.5
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+.+++.|.+....+...+..+|...+...+|-.---.+...|++.|+|+|.+..
T Consensus 617 ~~~~i~--~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 682 (704)
T 2rdo_7 617 MKVEVE--TPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTM 682 (704)
T ss_pred EEEEEE--eCHHHHhHHHHHHHhCCceEeCceecCCeEEEEEEecHHHHhhHHHHhHhhcCCceEEEE
Confidence 677777 999999999999998776787777766778899999987777888899999999999874
No 16
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=75.95 E-value=4.6 Score=40.65 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=52.6
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeC-CeEEEEEEecCCChHHHHHHHHhhcCCceEEEEe
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSG-GGLLLICLIDPGKYREIDELVRTETRGQGTLELL 379 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~-g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl 379 (465)
+++.|. +|.++.+.+.+.|.+....+.+.+..+ |...+.+.+|-.---.+...+++.|+|.|.+...
T Consensus 128 ~~v~I~--vPee~~G~Vm~~L~~RRG~i~~m~~~~~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~ 195 (332)
T 3e3x_A 128 ETVTID--VMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHT 195 (332)
T ss_dssp EEEEEE--EEGGGHHHHHHHHHHTTCEEEEEEECSSSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEE--ECHHHHHHHHHHHHhhcccccCceECCCCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEE
Confidence 456666 999999999999998776677766644 4457899999754456788899999999988653
No 17
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=74.91 E-value=5.6 Score=42.65 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=54.8
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+.+++.|.+--..|...+..+|...+...+|-.---.+...|+..|+|+|.+..
T Consensus 623 ~~veI~--~p~~~~G~V~~~L~~RRG~i~~~~~~~~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~ 688 (709)
T 4fn5_A 623 MKVEVV--TPEDYMGDVMGDLNRRRGLIQGMEDTVSGKVIRAEVPLGEMFGYATDVRSMSQGRASYSM 688 (709)
T ss_dssp EEEEEE--EETTTHHHHHHHHGGGTCEEEEEEECSSEEEEEEEEESGGGTTHHHHHHHHTTTCCEEEC
T ss_pred EEEEEE--ECHHHHHHHHHHHHhcCCEEeceEecCCCEEEEEEecHHHhhCHHHHHHhhCCCeEEEEE
Confidence 667777 999999999999988766677766667777889999976555789999999999998864
No 18
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=73.56 E-value=3 Score=44.30 Aligned_cols=66 Identities=11% Similarity=0.078 Sum_probs=56.4
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+.+++.|.+....|...+-.+|...+.+.+|-.---.+...|++.|+|+|.+..
T Consensus 539 ~~veI~--vP~~~~G~V~~~L~~RRG~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~~~ 604 (638)
T 3j25_A 539 LSFKIY--APQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGRSVCLT 604 (638)
T ss_dssp TTCEEE--EETTTHHHHHHHHHHTTCCCCCCCCCTTEEEEECCCSSCCHHHHHHHHHHTTTTCCEEEC
T ss_pred EEEEEE--ECHHHHHHHHHHHHhCCcEEeCeEecCCeEEEEEEECHHHhhCHHHHHHhhCCCcEEEEE
Confidence 556677 899999999999988766677766667888899999988888899999999999999864
No 19
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=70.14 E-value=7.2 Score=41.68 Aligned_cols=66 Identities=9% Similarity=0.097 Sum_probs=53.8
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeee-eCCeEEEEEEecCCCh-HHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEW-SGGGLLLICLIDPGKY-REIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~-~~g~~~~~~~I~PG~~-rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+.+.+.+.+.-..+..-+. ++|...+...+|-.-. ..+...+++.|+|.|.+..
T Consensus 408 ~~~~i~--vP~e~~G~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~ 475 (600)
T 2ywe_A 408 VLVTII--TPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDY 475 (600)
T ss_dssp EEEEEE--EEGGGHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEE--ecHHHHHHHHHHHHHcCcEEeccEEcCCCEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEE
Confidence 566666 9999999999999887656776666 4556888999998776 6788999999999998763
No 20
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=67.50 E-value=6.3 Score=42.02 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=52.2
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeCCeEEEEEEecCCCh-HHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKY-REIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~g~~~~~~~I~PG~~-rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+.+.+.+.+.-..+..-++.++...+...+|-.-- ..+...+++.|+|.|.+..
T Consensus 404 ~~~~i~--~P~e~~G~v~~~~~~rrG~~~~~~~~~~~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~ 470 (599)
T 3cb4_D 404 AECHML--LPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDY 470 (599)
T ss_dssp EEEEEE--EEGGGHHHHHHHHHHTTCEEEEEECCTTEEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEE
T ss_pred eEEEEE--eCHHHHHHHHHHHHHcCcEEeCcEecCCeEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEE
Confidence 566666 99999999999998866567777775667788889997554 4566888999999998763
No 21
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=67.42 E-value=9.3 Score=42.05 Aligned_cols=66 Identities=17% Similarity=0.096 Sum_probs=54.5
Q ss_pred EEEEEEEeeCchhHHHHHHHHHhhccccceeeeeC--CeEEEEEEecCCChHHHHHHHHhhcCCceEEEE
Q psy1329 311 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSG--GGLLLICLIDPGKYREIDELVRTETRGQGTLEL 378 (465)
Q Consensus 311 m~v~v~~~ip~~~~~~~~~~l~~~~~~ve~ee~~~--g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~ev 378 (465)
|++.|. +|.++.+.+++-|.+....|..++-.+ +...+...+|-.---.+...|++.|+|+|.+..
T Consensus 729 ~~veI~--vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~ 796 (842)
T 1n0u_A 729 FLVEIQ--CPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQM 796 (842)
T ss_dssp EEEEEE--ECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEE
T ss_pred EEEEEE--ccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEE
Confidence 677777 999999999999998776776655423 348899999988888899999999999998765
No 22
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=34.42 E-value=19 Score=29.85 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=17.3
Q ss_pred hhHHHhhcCCCCChhhhhccC
Q psy1329 127 NKVISWRNNIEKDIDEVLQTH 147 (465)
Q Consensus 127 nkv~~~R~g~e~dideVLq~~ 147 (465)
-+|..|.+|.+.+|...|.+-
T Consensus 5 ~~i~~W~~gk~~~ir~lL~~l 25 (92)
T 2qwo_B 5 LKILEWIEGKERNIRALLSTM 25 (92)
T ss_dssp HHHHHHHHHHTTCHHHHHHHG
T ss_pred HHHHHHHccChhHHHHHHHHH
Confidence 478999999999998877654
No 23
>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*
Probab=21.38 E-value=95 Score=23.77 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=33.8
Q ss_pred hhCCCC-HHHHHHHHHccCccceeeccccccccc--eEEEEEEecCeeEEEEechh
Q psy1329 75 AFNTED-QTEICKLILMKDMSKIFTPTNQIRMTN--VAIVRMKKAGKRFEIACYKN 127 (465)
Q Consensus 75 aFGTtD-~~eIak~IL~KGMs~i~~P~nqi~ltn--v~ivrlkk~gkrFEIacy~n 127 (465)
+|.++| .+++++.+...|-..+..|...-.... ..+.=.--+|.++||..+++
T Consensus 77 ~~~v~dd~~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~ 132 (133)
T 3ey7_A 77 CFITDTVLSDAMKHVEDQGVTIMEGPVKRTGAQGAITSFYFRDPDGNLIEVSTYSN 132 (133)
T ss_dssp EEECSSCHHHHHHHHHHTTCCCCEEEEEEEETTEEEEEEEEECTTCCEEEEEESCC
T ss_pred EEEeCcHHHHHHHHHHHCCCccccCCccccCCCCCeEEEEEECCCCCEEEEEecCC
Confidence 577886 999999999999763334433221111 12222334699999998875
Done!