Your job contains 1 sequence.
>psy1329
MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTN
VSKGQAANKEDLKKAFNTEDQTEICKLILMKDMSKIFTPTNQIRMTNVAIVRMKKAGKRF
EIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNMLNISSLTS
FREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERS
SQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTL
KQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYR
EIDELVRTETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFT
VSMIEAGLKQIHFSVNVNKNSKQQALEEDKTSGIYSSLYKACKFS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1329
(465 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q5ZIY4 - symbol:SBDS "Ribosome maturation prote... 622 9.0e-61 1
UNIPROTKB|A5D8M6 - symbol:sbds "Ribosome maturation prote... 615 5.0e-60 1
UNIPROTKB|E2R2W6 - symbol:SBDS "Uncharacterized protein" ... 611 1.3e-59 1
UNIPROTKB|Q9Y3A5 - symbol:SBDS "Ribosome maturation prote... 606 4.5e-59 1
UNIPROTKB|Q5RAZ2 - symbol:SBDS "Ribosome maturation prote... 606 4.5e-59 1
UNIPROTKB|Q6DIT8 - symbol:sbds "Ribosome maturation prote... 606 4.5e-59 1
UNIPROTKB|F1RJJ3 - symbol:SBDS "Uncharacterized protein" ... 604 7.3e-59 1
ZFIN|ZDB-GENE-040426-1116 - symbol:sbds "Shwachman-Bodian... 603 9.3e-59 1
UNIPROTKB|B5XEK1 - symbol:SBDS "Ribosome maturation prote... 600 1.9e-58 1
UNIPROTKB|Q3SWZ6 - symbol:SBDS "Ribosome maturation prote... 598 3.2e-58 1
MGI|MGI:1913961 - symbol:Sbds "Shwachman-Bodian-Diamond s... 598 3.2e-58 1
RGD|1311043 - symbol:Sbds "Shwachman-Bodian-Diamond syndr... 598 3.2e-58 1
FB|FBgn0035714 - symbol:CG8549 species:7227 "Drosophila m... 575 8.6e-56 1
DICTYBASE|DDB_G0272324 - symbol:sbds "Shwachman-Bodian-Di... 544 1.7e-52 1
WB|WBGene00021063 - symbol:sbds-1 species:6239 "Caenorhab... 522 3.6e-50 1
UNIPROTKB|Q23202 - symbol:sbds-1 "Ribosome maturation pro... 522 3.6e-50 1
TAIR|locus:2029152 - symbol:AT1G43860 "AT1G43860" species... 462 8.1e-44 1
UNIPROTKB|A8HPN6 - symbol:CHLREDRAFT_102075 "Predicted pr... 435 5.9e-41 1
UNIPROTKB|F1M0V8 - symbol:F1M0V8 "Uncharacterized protein... 427 4.2e-40 1
UNIPROTKB|Q6ZD69 - symbol:P0450B04.21 "cDNA clone:001-125... 412 1.6e-38 1
POMBASE|SPAC4F8.03 - symbol:sdo1 "SBDS family ribosome ma... 376 1.9e-38 2
UNIPROTKB|Q7RHF6 - symbol:PY04031 "Unnamed protein produc... 312 1.9e-38 3
SGD|S000004012 - symbol:SDO1 "Essential protein involved ... 320 1.7e-32 2
CGD|CAL0004172 - symbol:orf19.2708 species:5476 "Candida ... 348 9.8e-32 1
UNIPROTKB|Q5AF99 - symbol:CaO19.10223 "Putative uncharact... 348 9.8e-32 1
UNIPROTKB|Q75F96 - symbol:AAL154C "AAL154Cp" species:2848... 311 1.7e-31 2
UNIPROTKB|G4MNZ9 - symbol:MGG_05662 "Shwachman-Bodian-Dia... 286 2.5e-31 2
UNIPROTKB|Q7RXW9 - symbol:NCU00476 "Putative uncharacteri... 277 4.0e-30 2
GENEDB_PFALCIPARUM|PF14_0107 - symbol:PF14_0107 "hypothet... 294 2.5e-29 2
UNIPROTKB|Q8ILY6 - symbol:PF14_0107 "Putative uncharacter... 294 2.5e-29 2
ASPGD|ASPL0000027277 - symbol:AN5443 species:162425 "Emer... 223 7.7e-23 3
UNIPROTKB|Q5B1Y7 - symbol:AN5443.2 "UPF0023 family protei... 223 7.7e-23 3
UNIPROTKB|Q9UXC5 - symbol:psmA "Proteasome alpha subunit ... 203 1.2e-15 1
UNIPROTKB|Q8TPX6 - symbol:MA_1778 "Putative uncharacteriz... 189 4.0e-14 1
>UNIPROTKB|Q5ZIY4 [details] [associations]
symbol:SBDS "Ribosome maturation protein SBDS" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA]
[GO:0006364 "rRNA processing" evidence=IBA] [GO:0042273 "ribosomal
large subunit biogenesis" evidence=IBA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0001833
"inner cell mass cell proliferation" evidence=IEA] [GO:0008017
"microtubule binding" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0030282 "bone mineralization" evidence=IEA]
[GO:0030595 "leukocyte chemotaxis" evidence=IEA] [GO:0043148
"mitotic spindle stabilization" evidence=IEA] [GO:0048539 "bone
marrow development" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0042256 "mature ribosome assembly" evidence=ISS]
[GO:0043022 "ribosome binding" evidence=ISS] [GO:0000922 "spindle
pole" evidence=ISS] InterPro:IPR018978 Pfam:PF09377 GO:GO:0005634
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0008283
GO:GO:0003723 GO:GO:0043022 GO:GO:0042273 GO:GO:0000922
GO:GO:0019843 GO:GO:0043148 GO:GO:0006364 GO:GO:0042256
GO:GO:0030595 CTD:51119 eggNOG:COG1500 GeneTree:ENSGT00390000008135
HOGENOM:HOG000216685 HOVERGEN:HBG039762 KO:K14574 OMA:IERAKMK
OrthoDB:EOG40ZQZH InterPro:IPR018023 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
TIGRFAMs:TIGR00291 PROSITE:PS01267 EMBL:AJ720650 IPI:IPI00576219
RefSeq:NP_001006211.1 RefSeq:XP_003642436.1 UniGene:Gga.2272
ProteinModelPortal:Q5ZIY4 STRING:Q5ZIY4 PRIDE:Q5ZIY4
Ensembl:ENSGALT00000001658 GeneID:100858362 GeneID:417477
KEGG:gga:100858362 KEGG:gga:417477 InParanoid:Q5ZIY4
NextBio:20820767 Uniprot:Q5ZIY4
Length = 250
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 126/210 (60%), Positives = 160/210 (76%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
EKDIDEVLQTHTVF NVSKGQ A KEDL +AF T+DQTEICK+IL KGELQ+SDKER +Q
Sbjct: 44 EKDIDEVLQTHTVFVNVSKGQVAKKEDLVRAFGTDDQTEICKVILSKGELQVSDKERQTQ 103
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
+E F+DIATIV++KC+N ETKRP+TV +IE +K IH+SV NK++KQQALEVI LK+
Sbjct: 104 LEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIRQLKE 163
Query: 303 CMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKYR 360
M IERA MR+R + V G +ENE++ L ++CLIDPG +R
Sbjct: 164 TMQIERAHMRLRFILPVKEGKKLKEKLKPLIKV----IENEDFHDQ-LEIVCLIDPGCFR 218
Query: 361 EIDELVRTETRGQGTLELLNLKEVTEGEEE 390
EIDEL+R+ET+G+GTLE+L+LK+V EG+E+
Sbjct: 219 EIDELIRSETKGKGTLEVLSLKDVEEGDEK 248
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 69/102 (67%), Positives = 83/102 (81%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VR ++AGKRFEIACY+NKV+ WR+ EKDIDEVLQTHTVF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRARRAGKRFEIACYRNKVMGWRSGAEKDIDEVLQTHTVFVNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMKDMSKIFTPTNQIRM 105
GQ A KEDL +AF T+DQTEICK+IL K ++ Q ++
Sbjct: 63 GQVAKKEDLVRAFGTDDQTEICKVILSKGELQVSDKERQTQL 104
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 58/76 (76%), Positives = 67/76 (88%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VR ++AGKRFEIACY+NKV+ WR+ EKDIDEVLQTHTVF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRARRAGKRFEIACYRNKVMGWRSGAEKDIDEVLQTHTVFVNVSK 62
Query: 156 GQAANKEDLKKAFNTN 171
GQ A KEDL +AF T+
Sbjct: 63 GQVAKKEDLVRAFGTD 78
Score = 215 (80.7 bits), Expect = 5.8e-17, P = 5.8e-17
Identities = 43/97 (44%), Positives = 68/97 (70%)
Query: 354 IDPGKYREIDELVR---TETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKC 410
+ G+ + ++LVR T+ + + +L+ E+ ++ER +Q+E F+DIATIV++KC
Sbjct: 60 VSKGQVAKKEDLVRAFGTDDQTEICKVILSKGELQVSDKERQTQLEQMFRDIATIVADKC 119
Query: 411 INTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALE 447
+N ETKRP+TV +IE +K IH+SV NK++KQQALE
Sbjct: 120 VNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALE 156
>UNIPROTKB|A5D8M6 [details] [associations]
symbol:sbds "Ribosome maturation protein SBDS" species:8355
"Xenopus laevis" [GO:0000922 "spindle pole" evidence=ISS]
[GO:0008283 "cell proliferation" evidence=ISS] [GO:0042256 "mature
ribosome assembly" evidence=ISS] [GO:0043022 "ribosome binding"
evidence=ISS] InterPro:IPR018978 Pfam:PF09377 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0008283 GO:GO:0043022
GO:GO:0000922 GO:GO:0042256 CTD:51119 HOVERGEN:HBG039762 KO:K14574
InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
PROSITE:PS01267 EMBL:BC141736 RefSeq:NP_001092159.1
UniGene:Xl.46120 ProteinModelPortal:A5D8M6 PRIDE:A5D8M6
GeneID:100049749 KEGG:xla:100049749 Xenbase:XB-GENE-1003512
Uniprot:A5D8M6
Length = 250
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 125/216 (57%), Positives = 160/216 (74%)
Query: 175 ISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQI 234
+ S S EKD+DEVLQTH+VF NVSKGQ A KEDL KAF TEDQTEICK IL KGELQ+
Sbjct: 36 VMSWRSGAEKDLDEVLQTHSVFMNVSKGQGAKKEDLLKAFGTEDQTEICKQILSKGELQV 95
Query: 235 SDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQAL 294
S+KERS+Q+E F+DIATIV++KC+N ETKRP+TV++IE +K IH+SV K++KQQAL
Sbjct: 96 SEKERSTQLEQMFRDIATIVADKCVNPETKRPYTVNLIERAMKDIHYSVKATKSTKQQAL 155
Query: 295 EVIPTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLI 354
+VI LK+ M IERA MR+R V A +E+E + L ++CLI
Sbjct: 156 DVIKQLKETMQIERAHMRLRFIVPA--KDGKKLKEKLKPLIKHIESENFDQE-LEIVCLI 212
Query: 355 DPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEE 390
DPG +REIDEL+R ET+G+GTLE+L+LK+V EG+E+
Sbjct: 213 DPGCFREIDELIRCETKGKGTLEVLSLKDVEEGDEK 248
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 72/88 (81%), Positives = 78/88 (88%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMKK GKRFEIACYKNKV+SWR+ EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFMNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL KAF TEDQTEICK IL K
Sbjct: 63 GQGAKKEDLLKAFGTEDQTEICKQILSK 90
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 61/75 (81%), Positives = 67/75 (89%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMKK GKRFEIACYKNKV+SWR+ EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFMNVSK 62
Query: 156 GQAANKEDLKKAFNT 170
GQ A KEDL KAF T
Sbjct: 63 GQGAKKEDLLKAFGT 77
Score = 217 (81.4 bits), Expect = 3.5e-17, P = 3.5e-17
Identities = 42/97 (43%), Positives = 70/97 (72%)
Query: 354 IDPGKYREIDELVR---TETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKC 410
+ G+ + ++L++ TE + + ++L+ E+ E+ERS+Q+E F+DIATIV++KC
Sbjct: 60 VSKGQGAKKEDLLKAFGTEDQTEICKQILSKGELQVSEKERSTQLEQMFRDIATIVADKC 119
Query: 411 INTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALE 447
+N ETKRP+TV++IE +K IH+SV K++KQQAL+
Sbjct: 120 VNPETKRPYTVNLIERAMKDIHYSVKATKSTKQQALD 156
>UNIPROTKB|E2R2W6 [details] [associations]
symbol:SBDS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048539 "bone marrow development"
evidence=IEA] [GO:0043148 "mitotic spindle stabilization"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
[GO:0042256 "mature ribosome assembly" evidence=IEA] [GO:0030595
"leukocyte chemotaxis" evidence=IEA] [GO:0030282 "bone
mineralization" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0008017 "microtubule binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0001833
"inner cell mass cell proliferation" evidence=IEA] [GO:0000922
"spindle pole" evidence=IEA] InterPro:IPR018978 Pfam:PF09377
GO:GO:0005737 GO:GO:0005730 GO:GO:0043022 GO:GO:0000922
GO:GO:0030282 GO:GO:0019843 GO:GO:0043148 GO:GO:0006364
GO:GO:0001833 GO:GO:0042256 GO:GO:0030595 GO:GO:0048539
GeneTree:ENSGT00390000008135 OMA:IERAKMK InterPro:IPR018023
InterPro:IPR019783 InterPro:IPR002140 PANTHER:PTHR10927
Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291 PROSITE:PS01267
EMBL:AAEX03004194 Ensembl:ENSCAFT00000017228 Uniprot:E2R2W6
Length = 252
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 123/211 (58%), Positives = 160/211 (75%)
Query: 182 REKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSS 241
REKD+DEVLQTH+VF NVSKGQ A KEDL AF T+DQTEICK IL KGE+Q+SDKER +
Sbjct: 45 REKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHT 104
Query: 242 QIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLK 301
Q+E F+DIATIV++KC+N ETKRP+TV +IE +K IH+SV NK++KQQALEVI LK
Sbjct: 105 QLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLK 164
Query: 302 QCMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKY 359
+ M IERA MR+R + V+ G +E+E++ G L ++CLIDPG +
Sbjct: 165 EKMQIERAHMRLRFLLPVNEGKKLKEKLKPLIKV----IESEDY-GQQLEIVCLIDPGCF 219
Query: 360 REIDELVRTETRGQGTLELLNLKEVTEGEEE 390
REIDEL++ ET+G+G+LE+LNLK+V EG+E+
Sbjct: 220 REIDELIKKETKGKGSLEVLNLKDVEEGDEK 250
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 68/90 (75%), Positives = 76/90 (84%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNI--EKDIDEVLQTHTVFTNV 61
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ W+ EKD+DEVLQTH+VF NV
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWKAAFLREKDLDEVLQTHSVFVNV 62
Query: 62 SKGQAANKEDLKKAFNTEDQTEICKLILMK 91
SKGQ A KEDL AF T+DQTEICK IL K
Sbjct: 63 SKGQVAKKEDLISAFGTDDQTEICKQILTK 92
Score = 301 (111.0 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 58/78 (74%), Positives = 66/78 (84%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNI--EKDIDEVLQTHTVFTNV 153
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ W+ EKD+DEVLQTH+VF NV
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWKAAFLREKDLDEVLQTHSVFVNV 62
Query: 154 SKGQAANKEDLKKAFNTN 171
SKGQ A KEDL AF T+
Sbjct: 63 SKGQVAKKEDLISAFGTD 80
Score = 215 (80.7 bits), Expect = 5.8e-17, P = 5.8e-17
Identities = 42/97 (43%), Positives = 67/97 (69%)
Query: 354 IDPGKYREIDELVR---TETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKC 410
+ G+ + ++L+ T+ + + ++L EV ++ER +Q+E F+DIATIV++KC
Sbjct: 62 VSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKC 121
Query: 411 INTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALE 447
+N ETKRP+TV +IE +K IH+SV NK++KQQALE
Sbjct: 122 VNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALE 158
>UNIPROTKB|Q9Y3A5 [details] [associations]
symbol:SBDS "Ribosome maturation protein SBDS" species:9606
"Homo sapiens" [GO:0001833 "inner cell mass cell proliferation"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0042273
"ribosomal large subunit biogenesis" evidence=IBA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030282 "bone
mineralization" evidence=IMP] [GO:0000922 "spindle pole"
evidence=IDA] [GO:0008017 "microtubule binding" evidence=IDA]
[GO:0048539 "bone marrow development" evidence=IMP] [GO:0030595
"leukocyte chemotaxis" evidence=IDA] [GO:0019843 "rRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043148 "mitotic spindle stabilization" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0042256 "mature ribosome assembly"
evidence=IDA] [GO:0043022 "ribosome binding" evidence=IDA]
InterPro:IPR018978 Pfam:PF09377 GO:GO:0005737 GO:GO:0005654
GO:GO:0005730 GO:GO:0008283 GO:GO:0043022 GO:GO:0042273
GO:GO:0008017 GO:GO:0000922 GO:GO:0030282 GO:GO:0019843
GO:GO:0043148 GO:GO:0006364 EMBL:CH471140 GO:GO:0001833
GO:GO:0042256 GO:GO:0030595 GO:GO:0048539 Orphanet:88 CTD:51119
eggNOG:COG1500 HOGENOM:HOG000216685 HOVERGEN:HBG039762 KO:K14574
OrthoDB:EOG40ZQZH InterPro:IPR018023 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
TIGRFAMs:TIGR00291 PROSITE:PS01267 EMBL:AY169963 EMBL:AF151855
EMBL:AK001779 EMBL:AK289609 EMBL:BC065700 IPI:IPI00427330
RefSeq:NP_057122.2 UniGene:Hs.110445 PDB:2KDO PDB:2L9N PDBsum:2KDO
PDBsum:2L9N ProteinModelPortal:Q9Y3A5 SMR:Q9Y3A5 IntAct:Q9Y3A5
STRING:Q9Y3A5 PhosphoSite:Q9Y3A5 DMDM:28380824 PaxDb:Q9Y3A5
PeptideAtlas:Q9Y3A5 PRIDE:Q9Y3A5 DNASU:51119
Ensembl:ENST00000246868 GeneID:51119 KEGG:hsa:51119 UCSC:uc003tvm.1
GeneCards:GC07M066452 HGNC:HGNC:19440 HPA:HPA028891 MIM:260400
MIM:607444 neXtProt:NX_Q9Y3A5 Orphanet:811 PharmGKB:PA134978742
InParanoid:Q9Y3A5 OMA:DPYLARD PhylomeDB:Q9Y3A5 ChiTaRS:SBDS
EvolutionaryTrace:Q9Y3A5 GenomeRNAi:51119 NextBio:53897
ArrayExpress:Q9Y3A5 Bgee:Q9Y3A5 CleanEx:HS_SBDS
Genevestigator:Q9Y3A5 GermOnline:ENSG00000126524 Uniprot:Q9Y3A5
Length = 250
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 122/210 (58%), Positives = 159/210 (75%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
EKD+DEVLQTH+VF NVSKGQ A KEDL AF T+DQTEICK IL KGE+Q+SDKER +Q
Sbjct: 44 EKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQ 103
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
+E F+DIATIV++KC+N ETKRP+TV +IE +K IH+SV NK++KQQALEVI LK+
Sbjct: 104 LEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKE 163
Query: 303 CMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKYR 360
M IERA MR+R + V+ G +E+E++ G L ++CLIDPG +R
Sbjct: 164 KMKIERAHMRLRFILPVNEGKKLKEKLKPLIKV----IESEDY-GQQLEIVCLIDPGCFR 218
Query: 361 EIDELVRTETRGQGTLELLNLKEVTEGEEE 390
EIDEL++ ET+G+G+LE+LNLK+V EG+E+
Sbjct: 219 EIDELIKKETKGKGSLEVLNLKDVEEGDEK 248
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 69/88 (78%), Positives = 78/88 (88%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL AF T+DQTEICK IL K
Sbjct: 63 GQVAKKEDLISAFGTDDQTEICKQILTK 90
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 59/76 (77%), Positives = 68/76 (89%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 62
Query: 156 GQAANKEDLKKAFNTN 171
GQ A KEDL AF T+
Sbjct: 63 GQVAKKEDLISAFGTD 78
Score = 215 (80.7 bits), Expect = 5.8e-17, P = 5.8e-17
Identities = 42/97 (43%), Positives = 67/97 (69%)
Query: 354 IDPGKYREIDELVR---TETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKC 410
+ G+ + ++L+ T+ + + ++L EV ++ER +Q+E F+DIATIV++KC
Sbjct: 60 VSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKC 119
Query: 411 INTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALE 447
+N ETKRP+TV +IE +K IH+SV NK++KQQALE
Sbjct: 120 VNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALE 156
>UNIPROTKB|Q5RAZ2 [details] [associations]
symbol:SBDS "Ribosome maturation protein SBDS" species:9601
"Pongo abelii" [GO:0000922 "spindle pole" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0006364 "rRNA processing" evidence=ISS] [GO:0008017
"microtubule binding" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0019843 "rRNA binding"
evidence=ISS] [GO:0030282 "bone mineralization" evidence=ISS]
[GO:0030595 "leukocyte chemotaxis" evidence=ISS] [GO:0042256
"mature ribosome assembly" evidence=ISS] [GO:0043022 "ribosome
binding" evidence=ISS] [GO:0043148 "mitotic spindle stabilization"
evidence=ISS] [GO:0048539 "bone marrow development" evidence=ISS]
InterPro:IPR018978 Pfam:PF09377 GO:GO:0005737 GO:GO:0005654
GO:GO:0005730 GO:GO:0008283 GO:GO:0043022 GO:GO:0008017
GO:GO:0000922 GO:GO:0030282 GO:GO:0019843 GO:GO:0043148
GO:GO:0006364 GO:GO:0001833 GO:GO:0042256 GO:GO:0030595
GO:GO:0048539 CTD:51119 GeneTree:ENSGT00390000008135
HOVERGEN:HBG039762 KO:K14574 InterPro:IPR018023 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
TIGRFAMs:TIGR00291 PROSITE:PS01267 OMA:DPYLARD EMBL:CR858869
RefSeq:NP_001125618.1 UniGene:Pab.19145 ProteinModelPortal:Q5RAZ2
SMR:Q5RAZ2 PRIDE:Q5RAZ2 Ensembl:ENSPPYT00000020402 GeneID:100172536
KEGG:pon:100172536 InParanoid:Q5RAZ2 Uniprot:Q5RAZ2
Length = 250
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 122/210 (58%), Positives = 159/210 (75%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
EKD+DEVLQTH+VF NVSKGQ A KEDL AF T+DQTEICK IL KGE+Q+SDKER +Q
Sbjct: 44 EKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQ 103
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
+E F+DIATIV++KC+N ETKRP+TV +IE +K IH+SV NK++KQQALEVI LK+
Sbjct: 104 LEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKE 163
Query: 303 CMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKYR 360
M IERA MR+R + V+ G +E+E++ G L ++CLIDPG +R
Sbjct: 164 KMKIERAHMRLRFILPVNEGKKLKEKLKPLIKV----IESEDY-GQQLEIVCLIDPGCFR 218
Query: 361 EIDELVRTETRGQGTLELLNLKEVTEGEEE 390
EIDEL++ ET+G+G+LE+LNLK+V EG+E+
Sbjct: 219 EIDELIKKETKGKGSLEVLNLKDVEEGDEK 248
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 69/88 (78%), Positives = 78/88 (88%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL AF T+DQTEICK IL K
Sbjct: 63 GQVAKKEDLISAFGTDDQTEICKQILTK 90
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 59/76 (77%), Positives = 68/76 (89%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 62
Query: 156 GQAANKEDLKKAFNTN 171
GQ A KEDL AF T+
Sbjct: 63 GQVAKKEDLISAFGTD 78
Score = 215 (80.7 bits), Expect = 5.8e-17, P = 5.8e-17
Identities = 42/97 (43%), Positives = 67/97 (69%)
Query: 354 IDPGKYREIDELVR---TETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKC 410
+ G+ + ++L+ T+ + + ++L EV ++ER +Q+E F+DIATIV++KC
Sbjct: 60 VSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKC 119
Query: 411 INTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALE 447
+N ETKRP+TV +IE +K IH+SV NK++KQQALE
Sbjct: 120 VNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALE 156
>UNIPROTKB|Q6DIT8 [details] [associations]
symbol:sbds "Ribosome maturation protein SBDS" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000922 "spindle pole"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0006364 "rRNA processing" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0042256 "mature ribosome assembly"
evidence=ISS] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=ISS] [GO:0043022 "ribosome binding" evidence=ISS]
InterPro:IPR018978 Pfam:PF09377 GO:GO:0005634 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0008283 GO:GO:0003723
GO:GO:0043022 GO:GO:0042273 GO:GO:0000922 GO:GO:0006364
GO:GO:0042256 CTD:51119 eggNOG:COG1500 GeneTree:ENSGT00390000008135
HOGENOM:HOG000216685 HOVERGEN:HBG039762 KO:K14574 OrthoDB:EOG40ZQZH
InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
PROSITE:PS01267 EMBL:CR855635 EMBL:BC075447 RefSeq:NP_001004953.1
UniGene:Str.16646 ProteinModelPortal:Q6DIT8 STRING:Q6DIT8
PRIDE:Q6DIT8 Ensembl:ENSXETT00000022243 GeneID:448365
KEGG:xtr:448365 Xenbase:XB-GENE-1003506 InParanoid:Q6DIT8
Bgee:Q6DIT8 Uniprot:Q6DIT8
Length = 250
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 123/216 (56%), Positives = 158/216 (73%)
Query: 175 ISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQI 234
+ S S EKD+DEVLQTH+VF NVSKGQ A KEDL K+F TED TEICK IL KGELQ+
Sbjct: 36 VMSWRSGAEKDLDEVLQTHSVFMNVSKGQVAKKEDLLKSFGTEDPTEICKQILSKGELQV 95
Query: 235 SDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQAL 294
S+KERS+Q+E F+DIATIV++KC+N ETKRP+TV++IE +K IH+SV K++KQQAL
Sbjct: 96 SEKERSTQLEQMFRDIATIVADKCVNPETKRPYTVNLIERAMKDIHYSVKATKSTKQQAL 155
Query: 295 EVIPTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLI 354
+VI LK+ M IERA MR+R + A T EN + L ++CLI
Sbjct: 156 DVIKQLKETMQIERAHMRLRFILPAKDGKKLKEKLKPLIKHTESENFDQE---LEIVCLI 212
Query: 355 DPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEE 390
DPG +REIDEL+R ET+G+GTLE+L+LK+V EG+E+
Sbjct: 213 DPGCFREIDELIRCETKGKGTLEVLSLKDVEEGDEK 248
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 70/88 (79%), Positives = 77/88 (87%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMKK GKRFEIACYKNKV+SWR+ EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFMNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL K+F TED TEICK IL K
Sbjct: 63 GQVAKKEDLLKSFGTEDPTEICKQILSK 90
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 60/75 (80%), Positives = 67/75 (89%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMKK GKRFEIACYKNKV+SWR+ EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFMNVSK 62
Query: 156 GQAANKEDLKKAFNT 170
GQ A KEDL K+F T
Sbjct: 63 GQVAKKEDLLKSFGT 77
Score = 216 (81.1 bits), Expect = 4.5e-17, P = 4.5e-17
Identities = 42/97 (43%), Positives = 69/97 (71%)
Query: 354 IDPGKYREIDELVR---TETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKC 410
+ G+ + ++L++ TE + ++L+ E+ E+ERS+Q+E F+DIATIV++KC
Sbjct: 60 VSKGQVAKKEDLLKSFGTEDPTEICKQILSKGELQVSEKERSTQLEQMFRDIATIVADKC 119
Query: 411 INTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALE 447
+N ETKRP+TV++IE +K IH+SV K++KQQAL+
Sbjct: 120 VNPETKRPYTVNLIERAMKDIHYSVKATKSTKQQALD 156
>UNIPROTKB|F1RJJ3 [details] [associations]
symbol:SBDS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0001833 "inner cell mass cell proliferation"
evidence=IEA] [GO:0000922 "spindle pole" evidence=IEA] [GO:0048539
"bone marrow development" evidence=IEA] [GO:0043148 "mitotic
spindle stabilization" evidence=IEA] [GO:0043022 "ribosome binding"
evidence=IEA] [GO:0042256 "mature ribosome assembly" evidence=IEA]
[GO:0030595 "leukocyte chemotaxis" evidence=IEA] [GO:0030282 "bone
mineralization" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0008017 "microtubule binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR018978 Pfam:PF09377 GO:GO:0005737 GO:GO:0005730
GO:GO:0043022 GO:GO:0000922 GO:GO:0030282 GO:GO:0019843
GO:GO:0043148 GO:GO:0006364 GO:GO:0001833 GO:GO:0042256
GO:GO:0030595 GO:GO:0048539 CTD:51119 GeneTree:ENSGT00390000008135
KO:K14574 InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
PROSITE:PS01267 OMA:DPYLARD EMBL:FP236642 RefSeq:NP_001231322.1
UniGene:Ssc.15675 Ensembl:ENSSSCT00000008477 GeneID:100516003
KEGG:ssc:100516003 Uniprot:F1RJJ3
Length = 250
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 122/210 (58%), Positives = 159/210 (75%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
EKD+DEVLQTH+VF NVSKGQ A KEDL AF T+DQTEICK IL KGE+Q+SDKER +Q
Sbjct: 44 EKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQ 103
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
+E F+DIATIV++KC+N ETKRP+TV +IE +K IH+SV NK++KQQALEVI LK+
Sbjct: 104 LEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKE 163
Query: 303 CMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKYR 360
M IERA MR+R + V+ G +E+E++ G L ++CLIDPG +R
Sbjct: 164 NMKIERAHMRLRFILPVNEGKKLKEKLKPLIKV----IESEDY-GQQLEIVCLIDPGCFR 218
Query: 361 EIDELVRTETRGQGTLELLNLKEVTEGEEE 390
EIDEL++ ET+G+G+LE+LNLK+V EG+E+
Sbjct: 219 EIDELIKKETKGKGSLEVLNLKDVEEGDEK 248
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 69/88 (78%), Positives = 78/88 (88%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL AF T+DQTEICK IL K
Sbjct: 63 GQVAKKEDLISAFGTDDQTEICKQILTK 90
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 59/76 (77%), Positives = 68/76 (89%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 62
Query: 156 GQAANKEDLKKAFNTN 171
GQ A KEDL AF T+
Sbjct: 63 GQVAKKEDLISAFGTD 78
Score = 213 (80.0 bits), Expect = 9.7e-17, P = 9.7e-17
Identities = 42/97 (43%), Positives = 67/97 (69%)
Query: 354 IDPGKYREIDELVR---TETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKC 410
+ G+ + ++L+ T+ + + ++L EV ++ER +Q+E F+DIATIV++KC
Sbjct: 60 VSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKC 119
Query: 411 INTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALE 447
+N ETKRP+TV +IE +K IH+SV NK++KQQALE
Sbjct: 120 VNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALE 156
>ZFIN|ZDB-GENE-040426-1116 [details] [associations]
symbol:sbds "Shwachman-Bodian-Diamond syndrome"
species:7955 "Danio rerio" [GO:0042254 "ribosome biogenesis"
evidence=IEA;IMP] [GO:0005737 "cytoplasm" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0006364 "rRNA processing" evidence=IBA]
[GO:0042273 "ribosomal large subunit biogenesis" evidence=IBA]
[GO:0003723 "RNA binding" evidence=IBA] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0016477 "cell migration" evidence=IMP]
[GO:0002573 "myeloid leukocyte differentiation" evidence=IMP]
InterPro:IPR018978 Pfam:PF09377 ZFIN:ZDB-GENE-040426-1116
GO:GO:0005634 GO:GO:0005737 GO:GO:0016477 GO:GO:0003723
GO:GO:0042273 GO:GO:0006364 GO:GO:0031017 GO:GO:0002573
GeneTree:ENSGT00390000008135 InterPro:IPR018023 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
TIGRFAMs:TIGR00291 PROSITE:PS01267 EMBL:CU914374 IPI:IPI01024559
Ensembl:ENSDART00000149631 ArrayExpress:F8W5Q9 Bgee:F8W5Q9
Uniprot:F8W5Q9
Length = 257
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 127/222 (57%), Positives = 160/222 (72%)
Query: 175 ISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQI 234
+ S S EKD+DEVLQT+TVF NVSKGQ A KEDL AF T+D TEICK IL KGELQ+
Sbjct: 36 VMSWRSGAEKDLDEVLQTNTVFVNVSKGQVAKKEDLSNAFGTDDLTEICKQILSKGELQV 95
Query: 235 SDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQAL 294
SDKER SQ+E F+DIATIV+EKC+N ETKRP+TV++IE +K IHFSV NK++KQQAL
Sbjct: 96 SDKERQSQLEQMFRDIATIVAEKCVNPETKRPYTVNLIERAMKDIHFSVKANKSTKQQAL 155
Query: 295 EVIPTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGG---GLLL- 350
EVI LK+ + I+RA MR+R + A A VENE++ L L
Sbjct: 156 EVIKQLKESIQIQRAHMRLRFVLPAKDGKRLKEKLKPLIKA--VENEDFDDQLEMELFLL 213
Query: 351 --ICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEE 390
+CLIDPG +R+IDEL+R ET+G+GTLE+L+LK+V EG+E+
Sbjct: 214 FQVCLIDPGCFRDIDELIRCETKGKGTLEVLSLKDVEEGDEK 255
Score = 363 (132.8 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 69/88 (78%), Positives = 76/88 (86%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMKK GKRFEIACYKNKV+SWR+ EKD+DEVLQT+TVF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTNTVFVNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL AF T+D TEICK IL K
Sbjct: 63 GQVAKKEDLSNAFGTDDLTEICKQILSK 90
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 73/161 (45%), Positives = 97/161 (60%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMKK GKRFEIACYKNKV+SWR+ EKD+DEVLQT+TVF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTNTVFVNVSK 62
Query: 156 GQAANKEDLKKAFNTNMLN-----ISSLTSFREKDIDEVLQTHTVFTNVSK--GQAANKE 208
GQ A KEDL AF T+ L I S + D + Q +F +++ +
Sbjct: 63 GQVAKKEDLSNAFGTDDLTEICKQILSKGELQVSDKERQSQLEQMFRDIATIVAEKCVNP 122
Query: 209 DLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKD 249
+ K+ + K I + S K+++ ++ Q K+
Sbjct: 123 ETKRPYTVNLIERAMKDIHFSVKANKSTKQQALEVIKQLKE 163
Score = 224 (83.9 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 41/71 (57%), Positives = 57/71 (80%)
Query: 377 ELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVN 436
++L+ E+ ++ER SQ+E F+DIATIV+EKC+N ETKRP+TV++IE +K IHFSV
Sbjct: 86 QILSKGELQVSDKERQSQLEQMFRDIATIVAEKCVNPETKRPYTVNLIERAMKDIHFSVK 145
Query: 437 VNKNSKQQALE 447
NK++KQQALE
Sbjct: 146 ANKSTKQQALE 156
>UNIPROTKB|B5XEK1 [details] [associations]
symbol:SBDS "Ribosome maturation protein SBDS" species:8030
"Salmo salar" [GO:0000922 "spindle pole" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0006364 "rRNA processing" evidence=ISS] [GO:0008017
"microtubule binding" evidence=ISS] [GO:0019843 "rRNA binding"
evidence=ISS] [GO:0030282 "bone mineralization" evidence=ISS]
[GO:0030595 "leukocyte chemotaxis" evidence=ISS] [GO:0043148
"mitotic spindle stabilization" evidence=ISS] [GO:0048539 "bone
marrow development" evidence=ISS] InterPro:IPR018978 Pfam:PF09377
GO:GO:0005737 GO:GO:0005730 GO:GO:0008017 GO:GO:0000922
GO:GO:0030282 GO:GO:0019843 GO:GO:0043148 GO:GO:0006364
GO:GO:0030595 GO:GO:0048539 HOVERGEN:HBG039762 InterPro:IPR018023
InterPro:IPR019783 InterPro:IPR002140 PANTHER:PTHR10927
Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291 PROSITE:PS01267
EMBL:BT049470 EMBL:BT057084 Uniprot:B5XEK1
Length = 250
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 121/215 (56%), Positives = 159/215 (73%)
Query: 175 ISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQI 234
+ S S EKD+DEVLQT +VF NVSKGQ A K+DL KAF T+D TEICK IL KGELQ+
Sbjct: 36 VMSWRSGAEKDLDEVLQTSSVFNNVSKGQVAKKDDLSKAFGTDDLTEICKQILAKGELQV 95
Query: 235 SDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQAL 294
SDKER SQ+E F+DIATIV+EKC+N ETKRP+TV++IE +K IH+SV NK++KQQAL
Sbjct: 96 SDKERQSQLETSFRDIATIVAEKCVNPETKRPYTVNLIERAMKDIHYSVKANKSTKQQAL 155
Query: 295 EVIPTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLI 354
EVI LK+ + I+RA MR+R+ + A VE+E++ L ++CL+
Sbjct: 156 EVIRQLKESIEIQRAHMRLRLVLPA--KDGKRLKEKLKPLLKVVESEDFDDQ-LEMVCLV 212
Query: 355 DPGKYREIDELVRTETRGQGTLELLNLKEVTEGEE 389
DPG +REIDEL+R ET+G+G+LE+L+LK+V EG+E
Sbjct: 213 DPGCFREIDELIRCETKGKGSLEVLSLKDVEEGDE 247
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 68/88 (77%), Positives = 76/88 (86%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMKK GKRFEIACYKNKV+SWR+ EKD+DEVLQT +VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTSSVFNNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A K+DL KAF T+D TEICK IL K
Sbjct: 63 GQVAKKDDLSKAFGTDDLTEICKQILAK 90
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 72/161 (44%), Positives = 97/161 (60%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMKK GKRFEIACYKNKV+SWR+ EKD+DEVLQT +VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTSSVFNNVSK 62
Query: 156 GQAANKEDLKKAFNTNMLN-----ISSLTSFREKDIDEVLQTHTVFTNVSK--GQAANKE 208
GQ A K+DL KAF T+ L I + + D + Q T F +++ +
Sbjct: 63 GQVAKKDDLSKAFGTDDLTEICKQILAKGELQVSDKERQSQLETSFRDIATIVAEKCVNP 122
Query: 209 DLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKD 249
+ K+ + K I + S K+++ ++ Q K+
Sbjct: 123 ETKRPYTVNLIERAMKDIHYSVKANKSTKQQALEVIRQLKE 163
Score = 219 (82.2 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 44/97 (45%), Positives = 67/97 (69%)
Query: 354 IDPGKYREIDELVR---TETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKC 410
+ G+ + D+L + T+ + ++L E+ ++ER SQ+E F+DIATIV+EKC
Sbjct: 60 VSKGQVAKKDDLSKAFGTDDLTEICKQILAKGELQVSDKERQSQLETSFRDIATIVAEKC 119
Query: 411 INTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALE 447
+N ETKRP+TV++IE +K IH+SV NK++KQQALE
Sbjct: 120 VNPETKRPYTVNLIERAMKDIHYSVKANKSTKQQALE 156
>UNIPROTKB|Q3SWZ6 [details] [associations]
symbol:SBDS "Ribosome maturation protein SBDS" species:9913
"Bos taurus" [GO:0030282 "bone mineralization" evidence=ISS]
[GO:0043022 "ribosome binding" evidence=ISS] [GO:0042256 "mature
ribosome assembly" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0030595 "leukocyte chemotaxis" evidence=ISS] [GO:0043148
"mitotic spindle stabilization" evidence=ISS] [GO:0048539 "bone
marrow development" evidence=ISS] [GO:0008017 "microtubule binding"
evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS] [GO:0000922
"spindle pole" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0042273 "ribosomal large
subunit biogenesis" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001833 "inner cell mass cell
proliferation" evidence=IEA] InterPro:IPR018978 Pfam:PF09377
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0008283
GO:GO:0043022 GO:GO:0042273 GO:GO:0008017 GO:GO:0000922
GO:GO:0030282 GO:GO:0019843 GO:GO:0043148 GO:GO:0006364
GO:GO:0001833 GO:GO:0042256 GO:GO:0030595 GO:GO:0048539
EMBL:BC104585 IPI:IPI00709555 RefSeq:NP_001029611.1
UniGene:Bt.12631 ProteinModelPortal:Q3SWZ6 STRING:Q3SWZ6
PRIDE:Q3SWZ6 Ensembl:ENSBTAT00000005296 GeneID:513237
KEGG:bta:513237 CTD:51119 eggNOG:COG1500
GeneTree:ENSGT00390000008135 HOGENOM:HOG000216685
HOVERGEN:HBG039762 InParanoid:Q3SWZ6 KO:K14574 OMA:IERAKMK
OrthoDB:EOG40ZQZH NextBio:20870767 InterPro:IPR018023
InterPro:IPR019783 InterPro:IPR002140 PANTHER:PTHR10927
Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291 PROSITE:PS01267
Uniprot:Q3SWZ6
Length = 250
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 120/210 (57%), Positives = 159/210 (75%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
EKD+DEVLQTH+VF NVSKGQ A KEDL AF T+DQTEICK IL KGE+Q+SDKER +Q
Sbjct: 44 EKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQ 103
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
+E F+DIATIV++KC+N ETKRP+TV +IE +K IH+SV NK++KQQALEVI LK+
Sbjct: 104 LEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKE 163
Query: 303 CMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKYR 360
M IERA MR+R + V+ G +E+E++ G L ++CLIDPG +R
Sbjct: 164 KMKIERAHMRLRFILPVNEGKKLKEKLKPLIKV----IESEDY-GQQLEIVCLIDPGCFR 218
Query: 361 EIDELVRTETRGQGTLELLNLKEVTEGEEE 390
E+DEL++ ET+G+G+LE+L+LK+V EG+E+
Sbjct: 219 EVDELIKKETKGKGSLEVLSLKDVEEGDEK 248
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 69/88 (78%), Positives = 78/88 (88%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL AF T+DQTEICK IL K
Sbjct: 63 GQVAKKEDLISAFGTDDQTEICKQILTK 90
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 59/76 (77%), Positives = 68/76 (89%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 62
Query: 156 GQAANKEDLKKAFNTN 171
GQ A KEDL AF T+
Sbjct: 63 GQVAKKEDLISAFGTD 78
Score = 213 (80.0 bits), Expect = 9.7e-17, P = 9.7e-17
Identities = 42/97 (43%), Positives = 67/97 (69%)
Query: 354 IDPGKYREIDELVR---TETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKC 410
+ G+ + ++L+ T+ + + ++L EV ++ER +Q+E F+DIATIV++KC
Sbjct: 60 VSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKC 119
Query: 411 INTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALE 447
+N ETKRP+TV +IE +K IH+SV NK++KQQALE
Sbjct: 120 VNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALE 156
>MGI|MGI:1913961 [details] [associations]
symbol:Sbds "Shwachman-Bodian-Diamond syndrome homolog
(human)" species:10090 "Mus musculus" [GO:0000922 "spindle pole"
evidence=ISO] [GO:0001833 "inner cell mass cell proliferation"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=ISO;IBA] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO;IBA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=ISO;IBA] [GO:0008017 "microtubule binding" evidence=ISO]
[GO:0008283 "cell proliferation" evidence=ISO] [GO:0019843 "rRNA
binding" evidence=ISO] [GO:0030282 "bone mineralization"
evidence=ISO] [GO:0030595 "leukocyte chemotaxis" evidence=ISO]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0042256 "mature
ribosome assembly" evidence=ISO] [GO:0042273 "ribosomal large
subunit biogenesis" evidence=IBA] [GO:0043022 "ribosome binding"
evidence=ISO] [GO:0043148 "mitotic spindle stabilization"
evidence=ISO] [GO:0048539 "bone marrow development" evidence=ISO]
InterPro:IPR018978 Pfam:PF09377 MGI:MGI:1913961 GO:GO:0005634
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0003723
GO:GO:0043022 GO:GO:0042273 GO:GO:0000922 GO:GO:0030282
GO:GO:0019843 GO:GO:0043148 GO:GO:0006364 GO:GO:0001833
GO:GO:0042256 GO:GO:0030595 GO:GO:0048539 CTD:51119 eggNOG:COG1500
GeneTree:ENSGT00390000008135 HOGENOM:HOG000216685
HOVERGEN:HBG039762 KO:K14574 OMA:IERAKMK OrthoDB:EOG40ZQZH
InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
PROSITE:PS01267 EMBL:AK005079 EMBL:AK014648 EMBL:AK019228
EMBL:AK168847 EMBL:BC003849 EMBL:X99668 IPI:IPI00136151
RefSeq:NP_075737.1 UniGene:Mm.280484 ProteinModelPortal:P70122
SMR:P70122 STRING:P70122 PhosphoSite:P70122 PaxDb:P70122
PRIDE:P70122 Ensembl:ENSMUST00000026387 GeneID:66711 KEGG:mmu:66711
UCSC:uc008zuj.1 InParanoid:P70122 NextBio:322437 Bgee:P70122
CleanEx:MM_SBDS Genevestigator:P70122 GermOnline:ENSMUSG00000025337
Uniprot:P70122
Length = 250
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 122/210 (58%), Positives = 159/210 (75%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
EKD+DEVLQTH+VF NVSKGQ A KEDL AF T+DQTEICK IL KGE+Q+SDKER +Q
Sbjct: 44 EKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQ 103
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
+E F+DIATIV++KC+N ETKRP+TV +IE +K IH+SV NK++KQQALEVI LK+
Sbjct: 104 LEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKE 163
Query: 303 CMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKYR 360
M IERA MR+R + V+ G VE+E++S L ++CLIDPG +R
Sbjct: 164 KMKIERAHMRLRFILPVNEGKKLKEKLKPLMKV----VESEDYSQQ-LEIVCLIDPGCFR 218
Query: 361 EIDELVRTETRGQGTLELLNLKEVTEGEEE 390
EIDEL++ ET+G+G+LE+L+LK+V EG+E+
Sbjct: 219 EIDELIKKETKGRGSLEVLSLKDVEEGDEK 248
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMK+ GKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL AF T+DQTEICK IL K
Sbjct: 63 GQVAKKEDLISAFGTDDQTEICKQILTK 90
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 58/76 (76%), Positives = 67/76 (88%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMK+ GKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 62
Query: 156 GQAANKEDLKKAFNTN 171
GQ A KEDL AF T+
Sbjct: 63 GQVAKKEDLISAFGTD 78
Score = 213 (80.0 bits), Expect = 9.7e-17, P = 9.7e-17
Identities = 42/97 (43%), Positives = 67/97 (69%)
Query: 354 IDPGKYREIDELVR---TETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKC 410
+ G+ + ++L+ T+ + + ++L EV ++ER +Q+E F+DIATIV++KC
Sbjct: 60 VSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKC 119
Query: 411 INTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALE 447
+N ETKRP+TV +IE +K IH+SV NK++KQQALE
Sbjct: 120 VNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALE 156
>RGD|1311043 [details] [associations]
symbol:Sbds "Shwachman-Bodian-Diamond syndrome" species:10116
"Rattus norvegicus" [GO:0000922 "spindle pole" evidence=ISO;ISS]
[GO:0001833 "inner cell mass cell proliferation" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IBA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IBA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;IBA]
[GO:0006364 "rRNA processing" evidence=ISO;IBA] [GO:0008017
"microtubule binding" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008283 "cell proliferation"
evidence=ISO;ISS] [GO:0019843 "rRNA binding" evidence=ISO]
[GO:0030282 "bone mineralization" evidence=ISO] [GO:0030595
"leukocyte chemotaxis" evidence=ISO] [GO:0042256 "mature ribosome
assembly" evidence=ISO;ISS] [GO:0042273 "ribosomal large subunit
biogenesis" evidence=IBA] [GO:0043022 "ribosome binding"
evidence=ISO;ISS] [GO:0043148 "mitotic spindle stabilization"
evidence=ISO] [GO:0048539 "bone marrow development" evidence=ISO]
InterPro:IPR018978 Pfam:PF09377 RGD:1311043 GO:GO:0005634
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0008283
GO:GO:0003723 GO:GO:0043022 GO:GO:0042273 GO:GO:0000922
GO:GO:0006364 GO:GO:0042256 CTD:51119 eggNOG:COG1500
GeneTree:ENSGT00390000008135 HOGENOM:HOG000216685
HOVERGEN:HBG039762 KO:K14574 OMA:IERAKMK OrthoDB:EOG40ZQZH
InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
PROSITE:PS01267 EMBL:BC086335 IPI:IPI00371054 RefSeq:NP_001008290.1
UniGene:Rn.107123 ProteinModelPortal:Q5RK30 STRING:Q5RK30
PRIDE:Q5RK30 Ensembl:ENSRNOT00000001190 GeneID:288615
KEGG:rno:288615 InParanoid:Q5RK30 NextBio:628424
Genevestigator:Q5RK30 Uniprot:Q5RK30
Length = 250
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 122/210 (58%), Positives = 159/210 (75%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
EKD+DEVLQTH+VF NVSKGQ A KEDL AF T+DQTEICK IL KGE+Q+SDKER +Q
Sbjct: 44 EKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQ 103
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
+E F+DIATIV++KC+N ETKRP+TV +IE +K IH+SV NK++KQQALEVI LK+
Sbjct: 104 LEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKE 163
Query: 303 CMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKYR 360
M IERA MR+R + V+ G VE+E++S L ++CLIDPG +R
Sbjct: 164 KMKIERAHMRLRFLLPVNEGKKLKEKLKPLMKV----VESEDYSQQ-LEIVCLIDPGCFR 218
Query: 361 EIDELVRTETRGQGTLELLNLKEVTEGEEE 390
EIDEL++ ET+G+G+LE+L+LK+V EG+E+
Sbjct: 219 EIDELIKKETKGKGSLEVLSLKDVEEGDEK 248
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMK+ GKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL AF T+DQTEICK IL K
Sbjct: 63 GQVAKKEDLISAFGTDDQTEICKQILTK 90
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 58/76 (76%), Positives = 67/76 (88%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMK+ GKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 3 IFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 62
Query: 156 GQAANKEDLKKAFNTN 171
GQ A KEDL AF T+
Sbjct: 63 GQVAKKEDLISAFGTD 78
Score = 213 (80.0 bits), Expect = 9.7e-17, P = 9.7e-17
Identities = 42/97 (43%), Positives = 67/97 (69%)
Query: 354 IDPGKYREIDELVR---TETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKC 410
+ G+ + ++L+ T+ + + ++L EV ++ER +Q+E F+DIATIV++KC
Sbjct: 60 VSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKC 119
Query: 411 INTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALE 447
+N ETKRP+TV +IE +K IH+SV NK++KQQALE
Sbjct: 120 VNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALE 156
>FB|FBgn0035714 [details] [associations]
symbol:CG8549 species:7227 "Drosophila melanogaster"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA] [GO:0006364
"rRNA processing" evidence=IBA] [GO:0042273 "ribosomal large
subunit biogenesis" evidence=IBA] [GO:0003723 "RNA binding"
evidence=IBA] InterPro:IPR018978 Pfam:PF09377 GO:GO:0005634
GO:GO:0005737 GO:GO:0003723 GO:GO:0042273 GO:GO:0006364
InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
PROSITE:PS01267 EMBL:AY094666 ProteinModelPortal:Q8SXD6 SMR:Q8SXD6
STRING:Q8SXD6 PRIDE:Q8SXD6 FlyBase:FBgn0035714 InParanoid:Q8SXD6
OrthoDB:EOG4SF7NV ArrayExpress:Q8SXD6 Bgee:Q8SXD6 Uniprot:Q8SXD6
Length = 252
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 120/215 (55%), Positives = 147/215 (68%)
Query: 175 ISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQI 234
+ S S EKDIDEVLQT+TVFTNVSKGQAA K++L+KAFN D+TEICK IL KGELQ+
Sbjct: 37 VLSWRSNSEKDIDEVLQTYTVFTNVSKGQAAKKDELQKAFNKTDETEICKEILSKGELQV 96
Query: 235 SDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQAL 294
S+KER S ++ Q I V+ C+N ET+RP+ S+IE LK HFSV +N+N+KQ L
Sbjct: 97 SEKERQSCLDTQLNSIVNSVAALCVNPETRRPYPASIIEKSLKDAHFSVKMNRNTKQNTL 156
Query: 295 EVIPTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLI 354
E I LK M IER++M++RV AG A +VE+EEW L L LI
Sbjct: 157 EAIKILKDHMPIERSRMKLRVSF-AGKEGGGKLKESVVKLANAVEHEEWDEATLHLTLLI 215
Query: 355 DPGKYREIDELVRTETRGQGTLELLNLKEVTEGEE 389
DPG+YR IDELVR ET+G+G LELL LKEV E EE
Sbjct: 216 DPGQYRVIDELVRNETKGKGLLELLELKEVVESEE 250
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 75/91 (82%), Positives = 84/91 (92%)
Query: 1 MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTN 60
MSKIFTPTNQIR+TNVAIVR+KK GKRFEIACYKNKV+SWR+N EKDIDEVLQT+TVFTN
Sbjct: 1 MSKIFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWRSNSEKDIDEVLQTYTVFTN 60
Query: 61 VSKGQAANKEDLKKAFNTEDQTEICKLILMK 91
VSKGQAA K++L+KAFN D+TEICK IL K
Sbjct: 61 VSKGQAAKKDELQKAFNKTDETEICKEILSK 91
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 66/77 (85%), Positives = 74/77 (96%)
Query: 93 MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTN 152
MSKIFTPTNQIR+TNVAIVR+KK GKRFEIACYKNKV+SWR+N EKDIDEVLQT+TVFTN
Sbjct: 1 MSKIFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWRSNSEKDIDEVLQTYTVFTN 60
Query: 153 VSKGQAANKEDLKKAFN 169
VSKGQAA K++L+KAFN
Sbjct: 61 VSKGQAAKKDELQKAFN 77
Score = 167 (63.8 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 37/100 (37%), Positives = 56/100 (56%)
Query: 354 IDPGKYREIDELVRTETRGQGT---LELLNLKEVTEGEEERSSQIENQFKDIATIVSEKC 410
+ G+ + DEL + + T E+L+ E+ E+ER S ++ Q I V+ C
Sbjct: 61 VSKGQAAKKDELQKAFNKTDETEICKEILSKGELQVSEKERQSCLDTQLNSIVNSVAALC 120
Query: 411 INTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEEDK 450
+N ET+RP+ S+IE LK HFSV +N+N+KQ LE K
Sbjct: 121 VNPETRRPYPASIIEKSLKDAHFSVKMNRNTKQNTLEAIK 160
>DICTYBASE|DDB_G0272324 [details] [associations]
symbol:sbds "Shwachman-Bodian-Diamond syndrome
protein" species:44689 "Dictyostelium discoideum" [GO:0031143
"pseudopodium" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0042273 "ribosomal large
subunit biogenesis" evidence=ISS;IBA] [GO:0030687 "preribosome,
large subunit precursor" evidence=ISS] [GO:0000054 "ribosomal
subunit export from nucleus" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0003723 "RNA binding" evidence=IBA] [GO:0005856 "cytoskeleton"
evidence=IEA] [GO:0005819 "spindle" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR018978
Pfam:PF09377 dictyBase:DDB_G0272324 GO:GO:0005634 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0005819 GenomeReviews:CM000151_GR
GO:GO:0003723 EMBL:AAFI02000008 GO:GO:0042273 GO:GO:0030687
GO:GO:0006364 GO:GO:0000054 eggNOG:COG1500 KO:K14574 OMA:IERAKMK
InterPro:IPR019783 InterPro:IPR002140 PANTHER:PTHR10927
Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291 PROSITE:PS01267
RefSeq:XP_645141.1 ProteinModelPortal:Q86KZ5 STRING:Q86KZ5
EnsemblProtists:DDB0233143 GeneID:8618311 KEGG:ddi:DDB_G0272324
ProtClustDB:CLSZ2729240 Uniprot:Q86KZ5
Length = 274
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 105/216 (48%), Positives = 150/216 (69%)
Query: 176 SSLTSFR---EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGEL 232
S + S+R EKD++EV+Q H +FTNVSKG A K++L KAF T+++ EI LIL KGEL
Sbjct: 34 SKVQSYRSKIEKDLNEVIQIHRIFTNVSKGIIAKKDELIKAFGTDNEQEIILLILEKGEL 93
Query: 233 QISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQ 292
Q+S KER +Q E FKDIATIV+EKC+NTET+RP VS+IE +K +H+S++ K+SKQQ
Sbjct: 94 QVSSKERDNQSEQTFKDIATIVAEKCVNTETQRPIPVSIIEKAMKDVHYSIHPTKSSKQQ 153
Query: 293 ALEVIPTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLIC 352
+LEVI + + I+RAQMR+ + + + +E E+ GGGL ++C
Sbjct: 154 SLEVIKQISSVIPIQRAQMRLNITIPT-KESKTLNRDKLMVLVSKIEEEDRDGGGLSIVC 212
Query: 353 LIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGE 388
L+DPG YR+IDEL++ ET+G+G ++++NL EGE
Sbjct: 213 LVDPGSYRKIDELIKQETKGKGFIDIINLAVAKEGE 248
Score = 254 (94.5 bits), Expect = 2.9e-21, P = 2.9e-21
Identities = 49/88 (55%), Positives = 65/88 (73%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTP N +TN+ +VR KK +FEIACY +KV S+R+ IEKD++EV+Q H +FTNVSK
Sbjct: 3 IFTPVNNKTLTNIVVVRYKKGAAKFEIACYPSKVQSYRSKIEKDLNEVIQIHRIFTNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
G A K++L KAF T+++ EI LIL K
Sbjct: 63 GIIAKKDELIKAFGTDNEQEIILLILEK 90
Score = 230 (86.0 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 43/76 (56%), Positives = 57/76 (75%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTP N +TN+ +VR KK +FEIACY +KV S+R+ IEKD++EV+Q H +FTNVSK
Sbjct: 3 IFTPVNNKTLTNIVVVRYKKGAAKFEIACYPSKVQSYRSKIEKDLNEVIQIHRIFTNVSK 62
Query: 156 GQAANKEDLKKAFNTN 171
G A K++L KAF T+
Sbjct: 63 GIIAKKDELIKAFGTD 78
Score = 208 (78.3 bits), Expect = 3.4e-16, P = 3.4e-16
Identities = 43/97 (44%), Positives = 64/97 (65%)
Query: 354 IDPGKYREIDELVR---TETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKC 410
+ G + DEL++ T+ + L +L E+ +ER +Q E FKDIATIV+EKC
Sbjct: 60 VSKGIIAKKDELIKAFGTDNEQEIILLILEKGELQVSSKERDNQSEQTFKDIATIVAEKC 119
Query: 411 INTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALE 447
+NTET+RP VS+IE +K +H+S++ K+SKQQ+LE
Sbjct: 120 VNTETQRPIPVSIIEKAMKDVHYSIHPTKSSKQQSLE 156
>WB|WBGene00021063 [details] [associations]
symbol:sbds-1 species:6239 "Caenorhabditis elegans"
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IMP] InterPro:IPR018978
Pfam:PF09377 GO:GO:0005634 GO:GO:0008340 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0005819 GO:GO:0003723
GO:GO:0042273 GO:GO:0006364 eggNOG:COG1500
GeneTree:ENSGT00390000008135 HOGENOM:HOG000216685 KO:K14574
OMA:IERAKMK InterPro:IPR018023 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
TIGRFAMs:TIGR00291 PROSITE:PS01267 EMBL:FO080477 RefSeq:NP_497226.2
ProteinModelPortal:Q23202 SMR:Q23202 STRING:Q23202 PaxDb:Q23202
EnsemblMetazoa:W06E11.4.1 EnsemblMetazoa:W06E11.4.2 GeneID:175218
KEGG:cel:CELE_W06E11.4 UCSC:W06E11.4 CTD:175218 WormBase:W06E11.4
InParanoid:Q23202 NextBio:887244 Uniprot:Q23202
Length = 253
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 99/206 (48%), Positives = 144/206 (69%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
EKDIDEVLQTHTVF+NVSKGQ + KE+L AF EDQ EICK+IL KG+LQ+S+KER +
Sbjct: 46 EKDIDEVLQTHTVFSNVSKGQLSKKEELIAAFGIEDQLEICKIILDKGDLQVSEKERQAA 105
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
+ K+++ +++ +N ETKRP S+I+ L+++HFS+ N++SKQQAL+ IP L++
Sbjct: 106 SDQSLKEVSQLIASMVVNPETKRPVPPSVIDKALQEMHFSLKPNRSSKQQALDAIPKLRE 165
Query: 303 CMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKYREI 362
+ IERA+M++RV + + VE ++W G L ++ LI+PG +R +
Sbjct: 166 TLKIERAKMKIRVAIPTKEAKSVHTKLKTLF--SDVEVDDWQDGSLEMVGLIEPGSFRAL 223
Query: 363 DELVRTETRGQGTLELLNLKEVTEGE 388
D+LVR ET+G G LE+L+LK+V EGE
Sbjct: 224 DDLVRNETKGHGRLEILSLKDVVEGE 249
Score = 345 (126.5 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
Identities = 69/92 (75%), Positives = 77/92 (83%)
Query: 1 MSK-IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFT 59
MSK I TPTNQ +TNVA+VRMKK GKRFEIACYKNKV++WRN EKDIDEVLQTHTVF+
Sbjct: 1 MSKNIKTPTNQKVLTNVAVVRMKKTGKRFEIACYKNKVVNWRNKSEKDIDEVLQTHTVFS 60
Query: 60 NVSKGQAANKEDLKKAFNTEDQTEICKLILMK 91
NVSKGQ + KE+L AF EDQ EICK+IL K
Sbjct: 61 NVSKGQLSKKEELIAAFGIEDQLEICKIILDK 92
Score = 296 (109.3 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 59/77 (76%), Positives = 66/77 (85%)
Query: 93 MSK-IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFT 151
MSK I TPTNQ +TNVA+VRMKK GKRFEIACYKNKV++WRN EKDIDEVLQTHTVF+
Sbjct: 1 MSKNIKTPTNQKVLTNVAVVRMKKTGKRFEIACYKNKVVNWRNKSEKDIDEVLQTHTVFS 60
Query: 152 NVSKGQAANKEDLKKAF 168
NVSKGQ + KE+L AF
Sbjct: 61 NVSKGQLSKKEELIAAF 77
Score = 137 (53.3 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
Identities = 24/70 (34%), Positives = 47/70 (67%)
Query: 378 LLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNV 437
+L+ ++ E+ER + + K+++ +++ +N ETKRP S+I+ L+++HFS+
Sbjct: 89 ILDKGDLQVSEKERQAASDQSLKEVSQLIASMVVNPETKRPVPPSVIDKALQEMHFSLKP 148
Query: 438 NKNSKQQALE 447
N++SKQQAL+
Sbjct: 149 NRSSKQQALD 158
>UNIPROTKB|Q23202 [details] [associations]
symbol:sbds-1 "Ribosome maturation protein SBDS"
species:6239 "Caenorhabditis elegans" [GO:0042273 "ribosomal large
subunit biogenesis" evidence=IBA] [GO:0006364 "rRNA processing"
evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0003723 "RNA binding" evidence=IBA]
InterPro:IPR018978 Pfam:PF09377 GO:GO:0005634 GO:GO:0008340
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0005819
GO:GO:0003723 GO:GO:0042273 GO:GO:0006364 eggNOG:COG1500
GeneTree:ENSGT00390000008135 HOGENOM:HOG000216685 KO:K14574
OMA:IERAKMK InterPro:IPR018023 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
TIGRFAMs:TIGR00291 PROSITE:PS01267 EMBL:FO080477 RefSeq:NP_497226.2
ProteinModelPortal:Q23202 SMR:Q23202 STRING:Q23202 PaxDb:Q23202
EnsemblMetazoa:W06E11.4.1 EnsemblMetazoa:W06E11.4.2 GeneID:175218
KEGG:cel:CELE_W06E11.4 UCSC:W06E11.4 CTD:175218 WormBase:W06E11.4
InParanoid:Q23202 NextBio:887244 Uniprot:Q23202
Length = 253
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 99/206 (48%), Positives = 144/206 (69%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
EKDIDEVLQTHTVF+NVSKGQ + KE+L AF EDQ EICK+IL KG+LQ+S+KER +
Sbjct: 46 EKDIDEVLQTHTVFSNVSKGQLSKKEELIAAFGIEDQLEICKIILDKGDLQVSEKERQAA 105
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
+ K+++ +++ +N ETKRP S+I+ L+++HFS+ N++SKQQAL+ IP L++
Sbjct: 106 SDQSLKEVSQLIASMVVNPETKRPVPPSVIDKALQEMHFSLKPNRSSKQQALDAIPKLRE 165
Query: 303 CMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKYREI 362
+ IERA+M++RV + + VE ++W G L ++ LI+PG +R +
Sbjct: 166 TLKIERAKMKIRVAIPTKEAKSVHTKLKTLF--SDVEVDDWQDGSLEMVGLIEPGSFRAL 223
Query: 363 DELVRTETRGQGTLELLNLKEVTEGE 388
D+LVR ET+G G LE+L+LK+V EGE
Sbjct: 224 DDLVRNETKGHGRLEILSLKDVVEGE 249
Score = 345 (126.5 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
Identities = 69/92 (75%), Positives = 77/92 (83%)
Query: 1 MSK-IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFT 59
MSK I TPTNQ +TNVA+VRMKK GKRFEIACYKNKV++WRN EKDIDEVLQTHTVF+
Sbjct: 1 MSKNIKTPTNQKVLTNVAVVRMKKTGKRFEIACYKNKVVNWRNKSEKDIDEVLQTHTVFS 60
Query: 60 NVSKGQAANKEDLKKAFNTEDQTEICKLILMK 91
NVSKGQ + KE+L AF EDQ EICK+IL K
Sbjct: 61 NVSKGQLSKKEELIAAFGIEDQLEICKIILDK 92
Score = 296 (109.3 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 59/77 (76%), Positives = 66/77 (85%)
Query: 93 MSK-IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFT 151
MSK I TPTNQ +TNVA+VRMKK GKRFEIACYKNKV++WRN EKDIDEVLQTHTVF+
Sbjct: 1 MSKNIKTPTNQKVLTNVAVVRMKKTGKRFEIACYKNKVVNWRNKSEKDIDEVLQTHTVFS 60
Query: 152 NVSKGQAANKEDLKKAF 168
NVSKGQ + KE+L AF
Sbjct: 61 NVSKGQLSKKEELIAAF 77
Score = 137 (53.3 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
Identities = 24/70 (34%), Positives = 47/70 (67%)
Query: 378 LLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNV 437
+L+ ++ E+ER + + K+++ +++ +N ETKRP S+I+ L+++HFS+
Sbjct: 89 ILDKGDLQVSEKERQAASDQSLKEVSQLIASMVVNPETKRPVPPSVIDKALQEMHFSLKP 148
Query: 438 NKNSKQQALE 447
N++SKQQAL+
Sbjct: 149 NRSSKQQALD 158
>TAIR|locus:2029152 [details] [associations]
symbol:AT1G43860 "AT1G43860" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005737 "cytoplasm" evidence=ISM;IBA]
[GO:0006364 "rRNA processing" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0042273 "ribosomal large subunit
biogenesis" evidence=IBA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR018978 Pfam:PF09377 EMBL:CP002684 GO:GO:0005634
GO:GO:0005737 GO:GO:0003700 GO:GO:0003723 GO:GO:0042273
GO:GO:0006364 EMBL:AC006423 KO:K14574 OMA:IERAKMK
InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
PROSITE:PS01267 ProtClustDB:CLSN2688443 EMBL:AY054529 EMBL:BT008459
IPI:IPI00529060 PIR:E96502 RefSeq:NP_564488.1 UniGene:At.12064
ProteinModelPortal:Q9MAR2 SMR:Q9MAR2 STRING:Q9MAR2 PRIDE:Q9MAR2
EnsemblPlants:AT1G43860.1 GeneID:840982 KEGG:ath:AT1G43860
TAIR:At1g43860 InParanoid:Q9MAR2 PhylomeDB:Q9MAR2
Genevestigator:Q9MAR2 Uniprot:Q9MAR2
Length = 370
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 109/269 (40%), Positives = 162/269 (60%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
EKDIDEVLQ+HTV++NVSKG A +DL K+F ++D T+IC IL KGELQ++ KER SQ
Sbjct: 46 EKDIDEVLQSHTVYSNVSKGVLAKSKDLMKSFGSDDHTKICIDILEKGELQVAGKERESQ 105
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
+QF+DIATIV +K IN ET+RP+T+SM+E + +IHF+V+ + NSK+QAL+VI L++
Sbjct: 106 FSSQFRDIATIVMQKTINPETQRPYTISMVERLMHEIHFAVDPHSNSKKQALDVIRELQK 165
Query: 303 CMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKYREI 362
I+R+ MR+R+ V SV +++ SG + +C ++PG +RE
Sbjct: 166 HFPIKRSPMRLRLTVPVQNFPSLLEKLKEWD--GSVVSKDESGTQMSTVCEMEPGLFREC 223
Query: 363 DELVRTETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETK-RPFTV 421
D VR+ QG LE+L + EG+ E+ D+A + + ET+ + T
Sbjct: 224 DSHVRSI---QGRLEILAVSVHAEGDTSMDHYDEHD--DMALQTHKPLLPAETETKDLTD 278
Query: 422 SMIEAGLKQIHFSVNVNKNSKQQALEEDK 450
++E K ++ N KQ+ EE K
Sbjct: 279 PVVELSKKLQKQEISTTDNIKQEGGEEKK 307
Score = 301 (111.0 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 58/92 (63%), Positives = 73/92 (79%)
Query: 1 MSK-IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFT 59
MSK + P Q R+TNVA+VR+KK G RFEIACYKNKV+SWR+ +EKDIDEVLQ+HTV++
Sbjct: 1 MSKTLVQPVGQKRLTNVAVVRLKKQGNRFEIACYKNKVLSWRSGVEKDIDEVLQSHTVYS 60
Query: 60 NVSKGQAANKEDLKKAFNTEDQTEICKLILMK 91
NVSKG A +DL K+F ++D T+IC IL K
Sbjct: 61 NVSKGVLAKSKDLMKSFGSDDHTKICIDILEK 92
Score = 271 (100.5 bits), Expect = 7.1e-23, P = 7.1e-23
Identities = 51/80 (63%), Positives = 65/80 (81%)
Query: 93 MSK-IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFT 151
MSK + P Q R+TNVA+VR+KK G RFEIACYKNKV+SWR+ +EKDIDEVLQ+HTV++
Sbjct: 1 MSKTLVQPVGQKRLTNVAVVRLKKQGNRFEIACYKNKVLSWRSGVEKDIDEVLQSHTVYS 60
Query: 152 NVSKGQAANKEDLKKAFNTN 171
NVSKG A +DL K+F ++
Sbjct: 61 NVSKGVLAKSKDLMKSFGSD 80
>UNIPROTKB|A8HPN6 [details] [associations]
symbol:CHLREDRAFT_102075 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0042273 "ribosomal large subunit biogenesis" evidence=ISS]
InterPro:IPR018978 Pfam:PF09377 GO:GO:0005634 GO:GO:0005737
GO:GO:0003723 GO:GO:0042273 GO:GO:0006364 EMBL:DS496108
eggNOG:COG1500 KO:K14574 InterPro:IPR018023 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
TIGRFAMs:TIGR00291 PROSITE:PS01267 RefSeq:XP_001689481.1
STRING:A8HPN6 EnsemblPlants:EDP09219 GeneID:5715144
KEGG:cre:CHLREDRAFT_102075 ProtClustDB:CLSN2688443 Uniprot:A8HPN6
Length = 239
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 87/206 (42%), Positives = 133/206 (64%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
EKD+DEVLQT T+F NV KG A ++L+ AF T DQ IC IL KGELQ+ ++ER +
Sbjct: 36 EKDLDEVLQTTTIFHNVGKGVVAKDKELQAAFGTTDQHAICLEILAKGELQVGERERKQE 95
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
E+ FKD+A ++ EKC+N T RP+T+SM+E L+ IHF+++ K++KQQALE +P L++
Sbjct: 96 YEHLFKDVAGVLVEKCVNPNTNRPYTLSMLERALRDIHFNLDPKKSAKQQALEALPLLQK 155
Query: 303 CMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGL-LLICLIDPGKYRE 361
IERA+MR+R+ V A V + + GG+ +++ ++PG +R+
Sbjct: 156 EFPIERARMRLRLTVPVEAQQELEQLLQRE--AADVAGLDVAAGGMCVVVAQVEPGVFRD 213
Query: 362 IDELVRTETRGQGTLELLNLKEVTEG 387
++ ++T RG G LE+L+L + EG
Sbjct: 214 LNNFMQTTARGAGRLEVLSLAVMAEG 239
Score = 261 (96.9 bits), Expect = 4.8e-22, P = 4.8e-22
Identities = 51/82 (62%), Positives = 62/82 (75%)
Query: 10 QIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANK 69
Q R+TN+A+VR+KK G+RFEIACYKNKV WR+ IEKD+DEVLQT T+F NV KG A
Sbjct: 1 QKRLTNIAVVRLKKNGERFEIACYKNKVGDWRSGIEKDLDEVLQTTTIFHNVGKGVVAKD 60
Query: 70 EDLKKAFNTEDQTEICKLILMK 91
++L+ AF T DQ IC IL K
Sbjct: 61 KELQAAFGTTDQHAICLEILAK 82
Score = 234 (87.4 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 102 QIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANK 161
Q R+TN+A+VR+KK G+RFEIACYKNKV WR+ IEKD+DEVLQT T+F NV KG A
Sbjct: 1 QKRLTNIAVVRLKKNGERFEIACYKNKVGDWRSGIEKDLDEVLQTTTIFHNVGKGVVAKD 60
Query: 162 EDLKKAFNT 170
++L+ AF T
Sbjct: 61 KELQAAFGT 69
Score = 192 (72.6 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 38/90 (42%), Positives = 58/90 (64%)
Query: 358 KYREIDELVRTETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKR 417
K +E+ T + LE+L E+ GE ER + E+ FKD+A ++ EKC+N T R
Sbjct: 59 KDKELQAAFGTTDQHAICLEILAKGELQVGERERKQEYEHLFKDVAGVLVEKCVNPNTNR 118
Query: 418 PFTVSMIEAGLKQIHFSVNVNKNSKQQALE 447
P+T+SM+E L+ IHF+++ K++KQQALE
Sbjct: 119 PYTLSMLERALRDIHFNLDPKKSAKQQALE 148
>UNIPROTKB|F1M0V8 [details] [associations]
symbol:F1M0V8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0042254 "ribosome biogenesis" evidence=IEA]
InterPro:IPR018978 Pfam:PF09377 GO:GO:0042254
GeneTree:ENSGT00390000008135 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 IPI:IPI00559908
Ensembl:ENSRNOT00000012098 Uniprot:F1M0V8
Length = 235
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 96/210 (45%), Positives = 138/210 (65%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
EKDIDE LQT+++F V K A K+D AF T+DQT ICK IL KGE+ +SDK +++Q
Sbjct: 31 EKDIDEFLQTYSLFVKVFKCLVAKKKDFINAFGTDDQTLICKHILTKGEVYVSDK-KNTQ 89
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
+E F+DIAT V+ KC+ ETKR + + + E K IH+ VN +++KQQALEVI +K+
Sbjct: 90 LEQMFRDIATTVAYKCVKLETKRLYCIILSERATKDIHYLVN--QSTKQQALEVIKQVKE 147
Query: 303 CMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKYR 360
M IE+A M + + V+ G VE+E+++ L +ICLIDPG +R
Sbjct: 148 KMKIEQAHMHLHFILPVNEGKNLKDNLKPLKKVV---VESEDYNRQ-LEIICLIDPGYFR 203
Query: 361 EIDELVRTETRGQGTLELLNLKEVTEGEEE 390
EIDE+V+ ET+ +G L +L+LK+V EG+E+
Sbjct: 204 EIDEMVKKETKSKGILVVLSLKDVEEGDEK 233
Score = 206 (77.6 bits), Expect = 2.8e-28, Sum P(2) = 2.8e-28
Identities = 41/79 (51%), Positives = 56/79 (70%)
Query: 13 MTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDL 72
+TNV +++MK+ GK FE+A Y+NK +W + +EKDIDE LQT+++F V K A K+D
Sbjct: 1 LTNVTLLQMKQEGKHFELASYRNK--TWWSGVEKDIDEFLQTYSLFVKVFKCLVAKKKDF 58
Query: 73 KKAFNTEDQTEICKLILMK 91
AF T+DQT ICK IL K
Sbjct: 59 INAFGTDDQTLICKHILTK 77
Score = 165 (63.1 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 32/67 (47%), Positives = 47/67 (70%)
Query: 105 MTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDL 164
+TNV +++MK+ GK FE+A Y+NK +W + +EKDIDE LQT+++F V K A K+D
Sbjct: 1 LTNVTLLQMKQEGKHFELASYRNK--TWWSGVEKDIDEFLQTYSLFVKVFKCLVAKKKDF 58
Query: 165 KKAFNTN 171
AF T+
Sbjct: 59 INAFGTD 65
Score = 138 (53.6 bits), Expect = 2.8e-28, Sum P(2) = 2.8e-28
Identities = 29/68 (42%), Positives = 47/68 (69%)
Query: 384 VTEGE----EERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNK 439
+T+GE +++++Q+E F+DIAT V+ KC+ ETKR + + + E K IH+ VN +
Sbjct: 75 LTKGEVYVSDKKNTQLEQMFRDIATTVAYKCVKLETKRLYCIILSERATKDIHYLVN--Q 132
Query: 440 NSKQQALE 447
++KQQALE
Sbjct: 133 STKQQALE 140
>UNIPROTKB|Q6ZD69 [details] [associations]
symbol:P0450B04.21 "cDNA clone:001-125-F01, full insert
sequence" species:39947 "Oryza sativa Japonica Group" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006364 "rRNA processing"
evidence=ISS] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=ISS] InterPro:IPR018978 Pfam:PF09377 GO:GO:0005634
GO:GO:0005737 GO:GO:0003723 GO:GO:0042273 EMBL:AP008214
GO:GO:0006364 EMBL:CM000145 eggNOG:COG1500 KO:K14574
InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
PROSITE:PS01267 ProtClustDB:CLSN2688443 EMBL:AP004462 EMBL:AK064053
RefSeq:NP_001060798.1 UniGene:Os.7321 STRING:Q6ZD69
EnsemblPlants:LOC_Os08g01620.1 EnsemblPlants:LOC_Os08g01620.2
GeneID:4344458 KEGG:osa:4344458 OMA:QRRCKEC Uniprot:Q6ZD69
Length = 357
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 94/215 (43%), Positives = 134/215 (62%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
EKDIDEVLQ+HTV++NVSKG A +DL KAF+T+D T IC IL KGELQ+S KER +Q
Sbjct: 46 EKDIDEVLQSHTVYSNVSKGVLAKSKDLLKAFSTDDHTAICLEILDKGELQVSGKEREAQ 105
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
+ +QF +IATIV +K IN ET+RP+T++MIE + +HF+V+ N SK+QAL+VI L +
Sbjct: 106 LSSQFHEIATIVMDKTINPETRRPYTITMIERLMHDVHFAVDPNLTSKEQALKVIKKLTE 165
Query: 303 CMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKYREI 362
I+RA +RVR +A +V +++ SG ++C I+P R
Sbjct: 166 HFPIKRAPLRVRF--TAPKSKFASLTEKLEEWNANVISKDESGSQPSVVCEIEPSILRSC 223
Query: 363 DELVRTETRGQGTLELLNLKEVTEGEEERSSQIEN 397
+E ++ QG +E+L++ EG Q EN
Sbjct: 224 EERLKDV---QGRVEVLSVSAHAEGGSS-VDQYEN 254
Score = 290 (107.1 bits), Expect = 2.4e-25, P = 2.4e-25
Identities = 56/92 (60%), Positives = 72/92 (78%)
Query: 1 MSK-IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFT 59
MS+ + P Q R+TNVA+VR++K G+RFEIAC+ NKV+SWR +EKDIDEVLQ+HTV++
Sbjct: 1 MSRTLVQPVGQKRLTNVAVVRLRKHGQRFEIACFPNKVLSWRTRVEKDIDEVLQSHTVYS 60
Query: 60 NVSKGQAANKEDLKKAFNTEDQTEICKLILMK 91
NVSKG A +DL KAF+T+D T IC IL K
Sbjct: 61 NVSKGVLAKSKDLLKAFSTDDHTAICLEILDK 92
Score = 261 (96.9 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 49/80 (61%), Positives = 65/80 (81%)
Query: 93 MSK-IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFT 151
MS+ + P Q R+TNVA+VR++K G+RFEIAC+ NKV+SWR +EKDIDEVLQ+HTV++
Sbjct: 1 MSRTLVQPVGQKRLTNVAVVRLRKHGQRFEIACFPNKVLSWRTRVEKDIDEVLQSHTVYS 60
Query: 152 NVSKGQAANKEDLKKAFNTN 171
NVSKG A +DL KAF+T+
Sbjct: 61 NVSKGVLAKSKDLLKAFSTD 80
Score = 177 (67.4 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 36/90 (40%), Positives = 60/90 (66%)
Query: 358 KYREIDELVRTETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKR 417
K +++ + T+ LE+L+ E+ +ER +Q+ +QF +IATIV +K IN ET+R
Sbjct: 69 KSKDLLKAFSTDDHTAICLEILDKGELQVSGKEREAQLSSQFHEIATIVMDKTINPETRR 128
Query: 418 PFTVSMIEAGLKQIHFSVNVNKNSKQQALE 447
P+T++MIE + +HF+V+ N SK+QAL+
Sbjct: 129 PYTITMIERLMHDVHFAVDPNLTSKEQALK 158
>POMBASE|SPAC4F8.03 [details] [associations]
symbol:sdo1 "SBDS family ribosome maturation protein Sdo1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000054
"ribosomal subunit export from nucleus" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030687 "preribosome, large subunit precursor" evidence=ISO]
[GO:0042273 "ribosomal large subunit biogenesis" evidence=ISO]
InterPro:IPR018978 Pfam:PF09377 PomBase:SPAC4F8.03 GO:GO:0005829
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0042273
GO:GO:0030687 GO:GO:0000054 eggNOG:COG1500 HOGENOM:HOG000216685
KO:K14574 InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
PROSITE:PS01267 PIR:T38833 RefSeq:NP_593869.1
ProteinModelPortal:O14179 STRING:O14179 PRIDE:O14179
EnsemblFungi:SPAC4F8.03.1 GeneID:2543459 KEGG:spo:SPAC4F8.03
OMA:NQPSNQI OrthoDB:EOG42VCRJ NextBio:20804471 Uniprot:O14179
Length = 246
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 86/213 (40%), Positives = 126/213 (59%)
Query: 176 SSLTSFREK---DIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGEL 232
+ +T +R K D+DEVLQ H VF NVSKG A+++DLKKAF T+D +I IL KG+
Sbjct: 34 NKVTEWRNKIETDLDEVLQIHNVFNNVSKGHVASRQDLKKAFGTDDIDKIILEILQKGDF 93
Query: 233 QISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQ 292
Q+ +KER Q+ + ++DI + V+ C++ +KRP+ S+IE L FSV+ +K +K Q
Sbjct: 94 QVGEKERHHQMSSTYRDIVSHVTAMCMDPNSKRPYPASIIEKALSDCGFSVSTSKTAKSQ 153
Query: 293 ALEVIPTL--KQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLL 350
ALE I L K + I RA+MR+R+ V A +E EE
Sbjct: 154 ALEAIKKLQEKNEIPIVRARMRIRIVVDV--KQGKALRERLRSLADEIE-EENIDDEYEC 210
Query: 351 ICLIDPGKYREIDELVRTETRGQGTLELLNLKE 383
I L+ PG Y+ IDELVR ET+ +G +++L++ E
Sbjct: 211 IALVIPGNYKLIDELVRNETKNRGMVQVLDMSE 243
Score = 291 (107.5 bits), Expect = 1.9e-38, Sum P(2) = 1.9e-38
Identities = 55/88 (62%), Positives = 66/88 (75%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
I P QIR+TNV++V+ KK GKRFE+ACYKNKV WRN IE D+DEVLQ H VF NVSK
Sbjct: 3 ISQPVGQIRLTNVSVVKYKKGGKRFEVACYKNKVTEWRNKIETDLDEVLQIHNVFNNVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
G A+++DLKKAF T+D +I IL K
Sbjct: 63 GHVASRQDLKKAFGTDDIDKIILEILQK 90
Score = 276 (102.2 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 50/76 (65%), Positives = 60/76 (78%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
I P QIR+TNV++V+ KK GKRFE+ACYKNKV WRN IE D+DEVLQ H VF NVSK
Sbjct: 3 ISQPVGQIRLTNVSVVKYKKGGKRFEVACYKNKVTEWRNKIETDLDEVLQIHNVFNNVSK 62
Query: 156 GQAANKEDLKKAFNTN 171
G A+++DLKKAF T+
Sbjct: 63 GHVASRQDLKKAFGTD 78
Score = 141 (54.7 bits), Expect = 1.9e-38, Sum P(2) = 1.9e-38
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 376 LELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSV 435
LE+L + GE+ER Q+ + ++DI + V+ C++ +KRP+ S+IE L FSV
Sbjct: 85 LEILQKGDFQVGEKERHHQMSSTYRDIVSHVTAMCMDPNSKRPYPASIIEKALSDCGFSV 144
Query: 436 NVNKNSKQQALEEDK 450
+ +K +K QALE K
Sbjct: 145 STSKTAKSQALEAIK 159
>UNIPROTKB|Q7RHF6 [details] [associations]
symbol:PY04031 "Unnamed protein product, putative"
species:73239 "Plasmodium yoelii yoelii" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006364 "rRNA processing"
evidence=ISS] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=ISS] InterPro:IPR018978 Pfam:PF09377 GO:GO:0005634
GO:GO:0005737 GO:GO:0003723 GO:GO:0042273 GO:GO:0006364
eggNOG:COG1500 KO:K14574 InterPro:IPR018023 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
PROSITE:PS01267 EMBL:AABL01001208 RefSeq:XP_724279.1
ProteinModelPortal:Q7RHF6 GeneID:3789606 KEGG:pyo:PY04031
EuPathDB:PlasmoDB:PY04031 Uniprot:Q7RHF6
Length = 634
Score = 312 (114.9 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 65/153 (42%), Positives = 101/153 (66%)
Query: 165 KKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICK 224
KK +N +SSL E +ID+VLQ+H +FTN+SKG+ A K L FN++D EICK
Sbjct: 44 KKRNYSNKTYLSSLKICNELNIDDVLQSHLIFTNISKGEIAKKSQLNSCFNSDDNYEICK 103
Query: 225 LILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVN 284
IL KG LQIS++ER+ E +KDI ++ E +N +T P + +MIE+ +K + +S+N
Sbjct: 104 TILEKGTLQISNRERAILKEKMYKDIIEMLHEMSVNPQTGYPLSTNMIESMIKNVGYSIN 163
Query: 285 VNKNSKQQALEVIPTL-KQCMS-IERAQMRVRV 315
++ ++K+QAL+V L K+ I+RA MR+++
Sbjct: 164 IDDSTKKQALKVFELLHKEYEDVIQRAFMRIQI 196
Score = 150 (57.9 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 1 MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKD 47
M +F P NQ++ TNVAIV+ K G +FEIACYKNK+I W+N +++
Sbjct: 1 MGALFQPINQVKFTNVAIVKYKHKGNKFEIACYKNKIIDWKNGKKRN 47
Score = 150 (57.9 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 93 MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKD 139
M +F P NQ++ TNVAIV+ K G +FEIACYKNK+I W+N +++
Sbjct: 1 MGALFQPINQVKFTNVAIVKYKHKGNKFEIACYKNKIIDWKNGKKRN 47
Score = 143 (55.4 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 31/66 (46%), Positives = 40/66 (60%)
Query: 33 YKNKVISWRNNI--EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILM 90
Y NK I E +ID+VLQ+H +FTN+SKG+ A K L FN++D EICK IL
Sbjct: 48 YSNKTYLSSLKICNELNIDDVLQSHLIFTNISKGEIAKKSQLNSCFNSDDNYEICKTILE 107
Query: 91 KDMSKI 96
K +I
Sbjct: 108 KGTLQI 113
Score = 111 (44.1 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 24/75 (32%), Positives = 46/75 (61%)
Query: 373 QGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIH 432
+GTL++ N ER+ E +KDI ++ E +N +T P + +MIE+ +K +
Sbjct: 108 KGTLQISN--------RERAILKEKMYKDIIEMLHEMSVNPQTGYPLSTNMIESMIKNVG 159
Query: 433 FSVNVNKNSKQQALE 447
+S+N++ ++K+QAL+
Sbjct: 160 YSINIDDSTKKQALK 174
Score = 104 (41.7 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 125 YKNKVISWRNNI--EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTN 171
Y NK I E +ID+VLQ+H +FTN+SKG+ A K L FN++
Sbjct: 48 YSNKTYLSSLKICNELNIDDVLQSHLIFTNISKGEIAKKSQLNSCFNSD 96
Score = 40 (19.1 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 350 LICLIDPGKYREIDELVRTETRGQGTLELLN-LKEVTEGEEERS 392
++ L P YR IDE + + + L N +K T +++++
Sbjct: 413 IVFLCYPSLYRCIDEFTKKNKKNCSSKILSNNVKVATSNKKKKN 456
Score = 39 (18.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 32/152 (21%), Positives = 57/152 (37%)
Query: 114 KKAGKRFEIACYKNKV-ISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNM 172
KK K N V ++ N +K+ + + TN K + NK NTN
Sbjct: 430 KKNKKNCSSKILSNNVKVATSNKKKKNDSPTIPKESDNTNKKKEERKNK-------NTND 482
Query: 173 LNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGEL 232
N + S +K+ ++ +T N + +++ + + K N I K E
Sbjct: 483 KNKKN--SISKKEHNDSKGNNTYMKNSNDSESSVNDKISKNNN---------YITNKNEQ 531
Query: 233 QISDKERSSQIENQFKDIATIVSEKCINTETK 264
+ +++ I N I+ +K I TK
Sbjct: 532 SKNQNSKNNGINNN--RISNQTDDKIIQNSTK 561
>SGD|S000004012 [details] [associations]
symbol:SDO1 "Essential protein involved in ribosome
maturation" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0042256 "mature ribosome assembly"
evidence=IMP] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003723 "RNA binding" evidence=IBA] InterPro:IPR018978
Pfam:PF09377 SGD:S000004012 GO:GO:0005634 GO:GO:0005737
EMBL:BK006945 GO:GO:0003723 GO:GO:0042256 eggNOG:COG1500
GeneTree:ENSGT00390000008135 HOGENOM:HOG000216685 KO:K14574
InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
PROSITE:PS01267 OrthoDB:EOG42VCRJ EMBL:Z73194 PIR:S64849
RefSeq:NP_013122.1 ProteinModelPortal:Q07953 SMR:Q07953
IntAct:Q07953 MINT:MINT-2492507 STRING:Q07953 PaxDb:Q07953
PeptideAtlas:Q07953 EnsemblFungi:YLR022C GeneID:850709
KEGG:sce:YLR022C CYGD:YLR022c OMA:KVQDYRK ChEMBL:CHEMBL1741198
NextBio:966763 Genevestigator:Q07953 GermOnline:YLR022C
Uniprot:Q07953
Length = 250
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 81/207 (39%), Positives = 119/207 (57%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
EKD+DEVLQ H VF NVSKG ANKEDL+K F T + ++ + I+ KGE+Q+S+KER
Sbjct: 44 EKDLDEVLQIHQVFMNVSKGLVANKEDLQKCFGTTNVDDVIEEIMHKGEIQLSEKERQLM 103
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTL-- 300
+ ++ TIVS KCIN +K+ + +MI L+++ FS +NK +K QALE I L
Sbjct: 104 LNKVNNEMLTIVSAKCINPVSKKRYPPTMIHKALQELKFSPVINKPAKLQALEAIKLLVS 163
Query: 301 KQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSV------ENEEWSGGGLLLICLI 354
KQ + I RA+M+V+V +S A+S E + W+ GL I
Sbjct: 164 KQIIPIVRAKMKVKVAISEPSRQPELIEKISKLIASSPGESTKPELDPWTCTGL-----I 218
Query: 355 DPGKYREIDELVRTETRGQGTLELLNL 381
DP YR++ L + GT+++L++
Sbjct: 219 DPVNYRDLMTLCDKK----GTVQVLDM 241
Score = 270 (100.1 bits), Expect = 4.7e-23, P = 4.7e-23
Identities = 52/102 (50%), Positives = 72/102 (70%)
Query: 7 PTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQA 66
P+ QI++TNV++VR+KKA KRFE+ACY+NKV +R IEKD+DEVLQ H VF NVSKG
Sbjct: 6 PSGQIKLTNVSLVRLKKARKRFEVACYQNKVQDYRKGIEKDLDEVLQIHQVFMNVSKGLV 65
Query: 67 ANKEDLKKAFNTEDQTEICKLILMKDMSKIFTPTNQIRMTNV 108
ANKEDL+K F T + ++ + I+ K ++ Q+ + V
Sbjct: 66 ANKEDLQKCFGTTNVDDVIEEIMHKGEIQLSEKERQLMLNKV 107
Score = 257 (95.5 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 48/72 (66%), Positives = 59/72 (81%)
Query: 99 PTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQA 158
P+ QI++TNV++VR+KKA KRFE+ACY+NKV +R IEKD+DEVLQ H VF NVSKG
Sbjct: 6 PSGQIKLTNVSLVRLKKARKRFEVACYQNKVQDYRKGIEKDLDEVLQIHQVFMNVSKGLV 65
Query: 159 ANKEDLKKAFNT 170
ANKEDL+K F T
Sbjct: 66 ANKEDLQKCFGT 77
Score = 123 (48.4 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 377 ELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVN 436
E+++ E+ E+ER + ++ TIVS KCIN +K+ + +MI L+++ FS
Sbjct: 86 EIMHKGEIQLSEKERQLMLNKVNNEMLTIVSAKCINPVSKKRYPPTMIHKALQELKFSPV 145
Query: 437 VNKNSKQQALEEDK 450
+NK +K QALE K
Sbjct: 146 INKPAKLQALEAIK 159
>CGD|CAL0004172 [details] [associations]
symbol:orf19.2708 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] InterPro:IPR018978 Pfam:PF09377 CGD:CAL0004172
GO:GO:0042254 EMBL:AACQ01000023 EMBL:AACQ01000025 eggNOG:COG1500
HOGENOM:HOG000216685 KO:K14574 InterPro:IPR018023
InterPro:IPR019783 InterPro:IPR002140 PANTHER:PTHR10927
Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291 PROSITE:PS01267
RefSeq:XP_720229.1 RefSeq:XP_720459.1 ProteinModelPortal:Q5AF99
STRING:Q5AF99 GeneID:3637907 GeneID:3638087 KEGG:cal:CaO19.10223
KEGG:cal:CaO19.2708 Uniprot:Q5AF99
Length = 255
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 83/212 (39%), Positives = 125/212 (58%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
EKDIDEVLQ VF NVSKGQ AN +DL+K F T +Q EI IL KGE+Q+++KER++
Sbjct: 45 EKDIDEVLQIPQVFINVSKGQVANNDDLQKCFGTTNQDEIIAEILNKGEIQLNEKERNAN 104
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTL-- 300
++ + + I+S KCIN +K+ + SMIE L ++ F +N K +K QAL+ I L
Sbjct: 105 LQQKQNEFLNIISTKCINPRSKKRYPPSMIEKVLNEVKFHLNPTKPTKIQALDAIKLLVE 164
Query: 301 KQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKYR 360
KQ + I RAQM+VR+ +S VE E+ +G ++ +IDP YR
Sbjct: 165 KQIIPIARAQMKVRITLSKKAYLKTFQDEIKPVIDQIVE-EDNNGKQYEIVGIIDPINYR 223
Query: 361 EIDELVR-TE-----TRGQGTLELLNLKEVTE 386
+ L+ T+ +G+G++E+L++ + E
Sbjct: 224 VLVTLIENTDGSNKVAKGEGSIEVLDMSAIKE 255
Score = 283 (104.7 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 57/91 (62%), Positives = 68/91 (74%)
Query: 1 MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTN 60
M+ I P +QIR+TNV++VRMKK KRFEIACY+NKV WR+ +EKDIDEVLQ VF N
Sbjct: 1 MAVINQPNSQIRLTNVSLVRMKKGKKRFEIACYQNKVQDWRSKVEKDIDEVLQIPQVFIN 60
Query: 61 VSKGQAANKEDLKKAFNTEDQTEICKLILMK 91
VSKGQ AN +DL+K F T +Q EI IL K
Sbjct: 61 VSKGQVANNDDLQKCFGTTNQDEIIAEILNK 91
Score = 265 (98.3 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 61/129 (47%), Positives = 78/129 (60%)
Query: 93 MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTN 152
M+ I P +QIR+TNV++VRMKK KRFEIACY+NKV WR+ +EKDIDEVLQ VF N
Sbjct: 1 MAVINQPNSQIRLTNVSLVRMKKGKKRFEIACYQNKVQDWRSKVEKDIDEVLQIPQVFIN 60
Query: 153 VSKGQAANKEDLKKAFNTN--------MLNISSLTSFREKDIDEVLQT-HTVFTNVSKGQ 203
VSKGQ AN +DL+K F T +LN + EK+ + LQ F N+ +
Sbjct: 61 VSKGQVANNDDLQKCFGTTNQDEIIAEILNKGEI-QLNEKERNANLQQKQNEFLNIISTK 119
Query: 204 AANKEDLKK 212
N K+
Sbjct: 120 CINPRSKKR 128
Score = 134 (52.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 31/100 (31%), Positives = 55/100 (55%)
Query: 354 IDPGKYREIDELVR---TETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKC 410
+ G+ D+L + T + + E+LN E+ E+ER++ ++ + + I+S KC
Sbjct: 61 VSKGQVANNDDLQKCFGTTNQDEIIAEILNKGEIQLNEKERNANLQQKQNEFLNIISTKC 120
Query: 411 INTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEEDK 450
IN +K+ + SMIE L ++ F +N K +K QAL+ K
Sbjct: 121 INPRSKKRYPPSMIEKVLNEVKFHLNPTKPTKIQALDAIK 160
>UNIPROTKB|Q5AF99 [details] [associations]
symbol:CaO19.10223 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR018978 Pfam:PF09377
CGD:CAL0004172 GO:GO:0042254 EMBL:AACQ01000023 EMBL:AACQ01000025
eggNOG:COG1500 HOGENOM:HOG000216685 KO:K14574 InterPro:IPR018023
InterPro:IPR019783 InterPro:IPR002140 PANTHER:PTHR10927
Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291 PROSITE:PS01267
RefSeq:XP_720229.1 RefSeq:XP_720459.1 ProteinModelPortal:Q5AF99
STRING:Q5AF99 GeneID:3637907 GeneID:3638087 KEGG:cal:CaO19.10223
KEGG:cal:CaO19.2708 Uniprot:Q5AF99
Length = 255
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 83/212 (39%), Positives = 125/212 (58%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
EKDIDEVLQ VF NVSKGQ AN +DL+K F T +Q EI IL KGE+Q+++KER++
Sbjct: 45 EKDIDEVLQIPQVFINVSKGQVANNDDLQKCFGTTNQDEIIAEILNKGEIQLNEKERNAN 104
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTL-- 300
++ + + I+S KCIN +K+ + SMIE L ++ F +N K +K QAL+ I L
Sbjct: 105 LQQKQNEFLNIISTKCINPRSKKRYPPSMIEKVLNEVKFHLNPTKPTKIQALDAIKLLVE 164
Query: 301 KQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKYR 360
KQ + I RAQM+VR+ +S VE E+ +G ++ +IDP YR
Sbjct: 165 KQIIPIARAQMKVRITLSKKAYLKTFQDEIKPVIDQIVE-EDNNGKQYEIVGIIDPINYR 223
Query: 361 EIDELVR-TE-----TRGQGTLELLNLKEVTE 386
+ L+ T+ +G+G++E+L++ + E
Sbjct: 224 VLVTLIENTDGSNKVAKGEGSIEVLDMSAIKE 255
Score = 283 (104.7 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 57/91 (62%), Positives = 68/91 (74%)
Query: 1 MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTN 60
M+ I P +QIR+TNV++VRMKK KRFEIACY+NKV WR+ +EKDIDEVLQ VF N
Sbjct: 1 MAVINQPNSQIRLTNVSLVRMKKGKKRFEIACYQNKVQDWRSKVEKDIDEVLQIPQVFIN 60
Query: 61 VSKGQAANKEDLKKAFNTEDQTEICKLILMK 91
VSKGQ AN +DL+K F T +Q EI IL K
Sbjct: 61 VSKGQVANNDDLQKCFGTTNQDEIIAEILNK 91
Score = 265 (98.3 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 61/129 (47%), Positives = 78/129 (60%)
Query: 93 MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTN 152
M+ I P +QIR+TNV++VRMKK KRFEIACY+NKV WR+ +EKDIDEVLQ VF N
Sbjct: 1 MAVINQPNSQIRLTNVSLVRMKKGKKRFEIACYQNKVQDWRSKVEKDIDEVLQIPQVFIN 60
Query: 153 VSKGQAANKEDLKKAFNTN--------MLNISSLTSFREKDIDEVLQT-HTVFTNVSKGQ 203
VSKGQ AN +DL+K F T +LN + EK+ + LQ F N+ +
Sbjct: 61 VSKGQVANNDDLQKCFGTTNQDEIIAEILNKGEI-QLNEKERNANLQQKQNEFLNIISTK 119
Query: 204 AANKEDLKK 212
N K+
Sbjct: 120 CINPRSKKR 128
Score = 134 (52.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 31/100 (31%), Positives = 55/100 (55%)
Query: 354 IDPGKYREIDELVR---TETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKC 410
+ G+ D+L + T + + E+LN E+ E+ER++ ++ + + I+S KC
Sbjct: 61 VSKGQVANNDDLQKCFGTTNQDEIIAEILNKGEIQLNEKERNANLQQKQNEFLNIISTKC 120
Query: 411 INTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEEDK 450
IN +K+ + SMIE L ++ F +N K +K QAL+ K
Sbjct: 121 INPRSKKRYPPSMIEKVLNEVKFHLNPTKPTKIQALDAIK 160
>UNIPROTKB|Q75F96 [details] [associations]
symbol:AAL154C "AAL154Cp" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0006364 "rRNA processing" evidence=ISS] [GO:0042273 "ribosomal
large subunit biogenesis" evidence=ISS] InterPro:IPR018978
Pfam:PF09377 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0042273 EMBL:AE016814 GenomeReviews:AE016814_GR GO:GO:0006364
HOGENOM:HOG000216685 KO:K14574 InterPro:IPR018023
InterPro:IPR019783 InterPro:IPR002140 PANTHER:PTHR10927
Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291 PROSITE:PS01267
OrthoDB:EOG42VCRJ RefSeq:NP_982388.1 ProteinModelPortal:Q75F96
STRING:Q75F96 PRIDE:Q75F96 EnsemblFungi:AAS50212 GeneID:4618580
KEGG:ago:AGOS_AAL154C OMA:ETQWISK PhylomeDB:Q75F96 Uniprot:Q75F96
Length = 283
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 78/210 (37%), Positives = 115/210 (54%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
E D+DEVLQ + VF NVSKGQ A+ EDL AF T++Q + K IL +GE+Q+S+KER
Sbjct: 81 ETDLDEVLQINQVFLNVSKGQVASNEDLNGAFGTKEQEVVIKEILSRGEIQLSEKERQQM 140
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTL-- 300
++ T+VS KC+N +K+ + +MI L ++ F+V NK +K QALE I L
Sbjct: 141 HGKITNELLTLVSAKCVNPNSKKRYPPTMIHKALAELKFNVVTNKPAKLQALEAIKLLVQ 200
Query: 301 KQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKYR 360
+Q + I RA+MRV+ + AT E S + LIDP YR
Sbjct: 201 RQIIPIARAKMRVKAVLPREGNAEAIAQAASLIAATEAAPE--SATTWMCTGLIDPMNYR 258
Query: 361 EIDELVRTETRGQ-GTLELLNLKEVTEGEE 389
E+ L G+ GTL++L++ + + +
Sbjct: 259 ELVTLC-----GKCGTLQVLDMAVLDDANQ 283
Score = 253 (94.1 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 49/91 (53%), Positives = 66/91 (72%)
Query: 1 MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTN 60
M I P+ QI++TNV++VR+KK KRFE+ACY+NKV +R +E D+DEVLQ + VF N
Sbjct: 37 MGVINQPSGQIKLTNVSLVRLKKGKKRFEVACYQNKVQDYRRGVETDLDEVLQINQVFLN 96
Query: 61 VSKGQAANKEDLKKAFNTEDQTEICKLILMK 91
VSKGQ A+ EDL AF T++Q + K IL +
Sbjct: 97 VSKGQVASNEDLNGAFGTKEQEVVIKEILSR 127
Score = 238 (88.8 bits), Expect = 1.7e-19, P = 1.7e-19
Identities = 53/112 (47%), Positives = 69/112 (61%)
Query: 91 KDMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVF 150
+ M I P+ QI++TNV++VR+KK KRFE+ACY+NKV +R +E D+DEVLQ + VF
Sbjct: 35 RPMGVINQPSGQIKLTNVSLVRLKKGKKRFEVACYQNKVQDYRRGVETDLDEVLQINQVF 94
Query: 151 TNVSKGQAANKEDLKKAFNTNMLN--ISSLTSFREKDIDEV--LQTHTVFTN 198
NVSKGQ A+ EDL AF T I + S E + E Q H TN
Sbjct: 95 LNVSKGQVASNEDLNGAFGTKEQEVVIKEILSRGEIQLSEKERQQMHGKITN 146
Score = 118 (46.6 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 377 ELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVN 436
E+L+ E+ E+ER ++ T+VS KC+N +K+ + +MI L ++ F+V
Sbjct: 123 EILSRGEIQLSEKERQQMHGKITNELLTLVSAKCVNPNSKKRYPPTMIHKALAELKFNVV 182
Query: 437 VNKNSKQQALEEDK 450
NK +K QALE K
Sbjct: 183 TNKPAKLQALEAIK 196
>UNIPROTKB|G4MNZ9 [details] [associations]
symbol:MGG_05662 "Shwachman-Bodian-Diamond syndrome
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
[GO:0006364 "rRNA processing" evidence=ISS] InterPro:IPR018978
Pfam:PF09377 GO:GO:0005829 GO:GO:0005730 EMBL:CM001231
GO:GO:0006364 KO:K14574 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
RefSeq:XP_003710560.1 ProteinModelPortal:G4MNZ9
EnsemblFungi:MGG_05662T0 GeneID:2676018 KEGG:mgr:MGG_05662
Uniprot:G4MNZ9
Length = 320
Score = 286 (105.7 bits), Expect = 2.5e-31, Sum P(2) = 2.5e-31
Identities = 92/244 (37%), Positives = 124/244 (50%)
Query: 93 MSK-IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFT 151
MS+ I P+NQI++TNV++VR+KK KRFEIACYKNKV+ WR+ IE D+D VLQ VF
Sbjct: 1 MSRQINQPSNQIKLTNVSLVRLKKGKKRFEIACYKNKVLEWRSGIETDLDNVLQIPNVFL 60
Query: 152 NVSKGQAANKEDLKKAFNTNM------LNISSLTSFREKDIDEVLQTHTVFTNVSKGQAA 205
NVSKGQ A DL KAF ++ L I + + D + Q V V G A
Sbjct: 61 NVSKGQTAPSADLAKAFGKDVPVADVILEILNKGDIQVGDKERAQQLERVHNEVV-GIVA 119
Query: 206 NK--EDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTET 263
+K + K T E K + M Q +++ Q +N K A +E T T
Sbjct: 120 SKLVDPRTKRVYTTGMIE--KALDMLSS-QAHTQQQQQQQQN--KSAADGKTESSSGTAT 174
Query: 264 KRPFTVSMIEAG-------LKQIHFSVNVNKNSKQQALEVIPTL--KQCMSIERAQMRVR 314
P T + E G K + V KN+K QALE + L Q + + RA+MR+R
Sbjct: 175 --PTTAAASENGEAAGGKSSKLLWTGVVTTKNAKLQALEAMKALIAHQPIPVARARMRLR 232
Query: 315 VEVS 318
+ S
Sbjct: 233 IACS 236
Score = 247 (92.0 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 49/80 (61%), Positives = 60/80 (75%)
Query: 1 MSK-IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFT 59
MS+ I P+NQI++TNV++VR+KK KRFEIACYKNKV+ WR+ IE D+D VLQ VF
Sbjct: 1 MSRQINQPSNQIKLTNVSLVRLKKGKKRFEIACYKNKVLEWRSGIETDLDNVLQIPNVFL 60
Query: 60 NVSKGQAANKEDLKKAFNTE 79
NVSKGQ A DL KAF +
Sbjct: 61 NVSKGQTAPSADLAKAFGKD 80
Score = 116 (45.9 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 376 LELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSV 435
LE+LN ++ G++ER+ Q+E ++ IV+ K ++ TKR +T MIE L +
Sbjct: 88 LEILNKGDIQVGDKERAQQLERVHNEVVGIVASKLVDPRTKRVYTTGMIEKALDMLSSQA 147
Query: 436 NVNKNSKQQ 444
+ + +QQ
Sbjct: 148 HTQQQQQQQ 156
Score = 79 (32.9 bits), Expect = 2.5e-31, Sum P(2) = 2.5e-31
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 338 VENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNL 381
VEN++ G + ++PG ++ + + + ET+GQG +E+L++
Sbjct: 271 VENQDVVGSEWEVTGFVEPGAFKAVSDFIGNETKGQGRVEVLDM 314
Score = 43 (20.2 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 30/111 (27%), Positives = 47/111 (42%)
Query: 347 GLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIV 406
G++ L+DP R V T + L++L+ + T+ +++ + Q K A
Sbjct: 116 GIVASKLVDPRTKR-----VYTTGMIEKALDMLSSQAHTQQQQQ-----QQQNKSAADGK 165
Query: 407 SEKCINTETKRPFTVSMIEAG-------LKQIHFSVNVNKNSKQQALEEDK 450
+E T T P T + E G K + V KN+K QALE K
Sbjct: 166 TESSSGTAT--PTTAAASENGEAAGGKSSKLLWTGVVTTKNAKLQALEAMK 214
>UNIPROTKB|Q7RXW9 [details] [associations]
symbol:NCU00476 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006364 "rRNA processing"
evidence=ISS] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=ISS] InterPro:IPR018978 Pfam:PF09377 GO:GO:0005634
GO:GO:0005737 GO:GO:0003723 GO:GO:0042273 GO:GO:0006364
EMBL:AABX02000001 eggNOG:COG1500 HOGENOM:HOG000216685 KO:K14574
InterPro:IPR019783 InterPro:IPR002140 PANTHER:PTHR10927
Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291 OrthoDB:EOG42VCRJ
RefSeq:XP_956795.1 ProteinModelPortal:Q7RXW9 STRING:Q7RXW9
EnsemblFungi:EFNCRT00000000146 GeneID:3872942 KEGG:ncr:NCU00476
Uniprot:Q7RXW9
Length = 315
Score = 277 (102.6 bits), Expect = 4.0e-30, Sum P(2) = 4.0e-30
Identities = 82/228 (35%), Positives = 119/228 (52%)
Query: 99 PTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQA 158
P+NQI++TNV++VR+KK KRFE+ACYKNKV+ WR+ IE D+D VLQ VF NVSKGQ
Sbjct: 6 PSNQIKLTNVSLVRLKKGKKRFEVACYKNKVLEWRSGIETDLDNVLQIPNVFLNVSKGQT 65
Query: 159 ANKEDLKKAF------NTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKED--L 210
A +L+KAF N +L I + + + Q V V A+ D
Sbjct: 66 APTAELQKAFGKDTSVNDIILEILKKGEMQVGEKERSAQLERVHNEVVSIVASKLVDPRT 125
Query: 211 KKAFNTEDQTEICKLILMKG-ELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTV 269
KK + T + ++ + +LQ +KE+ + AT E + E K T
Sbjct: 126 KKVYTTGMIDKALDMLSSQAHQLQEKEKEKKDAAASGTASPAT--GE---SGEAKPQPTK 180
Query: 270 SMIEAGLKQIHFSVNVNKNSKQQALEVIPTL--KQCMSIERAQMRVRV 315
S+ I V+ NK++K QALE + L Q + + RA+MR+R+
Sbjct: 181 SL------PIWTGVSTNKSAKSQALEAMKALVAHQPIPVARARMRLRI 222
Score = 244 (91.0 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 47/83 (56%), Positives = 62/83 (74%)
Query: 7 PTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQA 66
P+NQI++TNV++VR+KK KRFE+ACYKNKV+ WR+ IE D+D VLQ VF NVSKGQ
Sbjct: 6 PSNQIKLTNVSLVRLKKGKKRFEVACYKNKVLEWRSGIETDLDNVLQIPNVFLNVSKGQT 65
Query: 67 ANKEDLKKAFNTEDQTEICKLIL 89
A +L+KAF + T + +IL
Sbjct: 66 APTAELQKAFGKD--TSVNDIIL 86
Score = 108 (43.1 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 376 LELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSV 435
LE+L E+ GE+ERS+Q+E ++ +IV+ K ++ TK+ +T MI+ L +
Sbjct: 86 LEILKKGEMQVGEKERSAQLERVHNEVVSIVASKLVDPRTKKVYTTGMIDKALDMLSSQA 145
Query: 436 NVNKNSKQQALEEDKTSGIYS 456
+ K++ ++ SG S
Sbjct: 146 H-QLQEKEKEKKDAAASGTAS 165
Score = 78 (32.5 bits), Expect = 4.0e-30, Sum P(2) = 4.0e-30
Identities = 13/44 (29%), Positives = 30/44 (68%)
Query: 338 VENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNL 381
VE+++ G L+ ++PG ++ + + + +ET+GQG +E+L++
Sbjct: 266 VESQDVMGQEWELVGFVEPGAFKILSDFIGSETKGQGRVEVLDM 309
Score = 42 (19.8 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 435 VNVNKNSKQQALEEDK 450
V+ NK++K QALE K
Sbjct: 188 VSTNKSAKSQALEAMK 203
>GENEDB_PFALCIPARUM|PF14_0107 [details] [associations]
symbol:PF14_0107 "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR018978 Pfam:PF09377 GO:GO:0042254 EMBL:AE014187
KO:K14574 InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 PROSITE:PS01267
RefSeq:XP_001348280.1 ProteinModelPortal:Q8ILY6 IntAct:Q8ILY6
MINT:MINT-1560774 EnsemblProtists:PF14_0107:mRNA GeneID:811688
KEGG:pfa:PF14_0107 EuPathDB:PlasmoDB:PF3D7_1410900
HOGENOM:HOG000281345 OMA:DRENESM ProtClustDB:CLSZ2501021
Uniprot:Q8ILY6
Length = 638
Score = 294 (108.6 bits), Expect = 2.0e-23, P = 2.0e-23
Identities = 59/135 (43%), Positives = 93/135 (68%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
E +ID+VLQ+H +FTN+SKG+ A K +L F ++D +ICK IL KG LQIS+KER+
Sbjct: 46 ELNIDDVLQSHLIFTNISKGEIAKKSELNSCFQSDDNYKICKTILEKGTLQISNKERAIL 105
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
E +KD+ I+ E +N +T P + +MIE+ +K I +S+N++ ++K+QAL+V TL +
Sbjct: 106 KEKIYKDMIEILHEMSVNPQTGYPISTNMIESMVKNIGYSINIDDSAKKQALKVFDTLSK 165
Query: 303 CMS--IERAQMRVRV 315
I+RA MR+++
Sbjct: 166 EYDDIIQRAFMRIQI 180
Score = 282 (104.3 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
Identities = 50/93 (53%), Positives = 68/93 (73%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
+F P NQ++ TNVAIV+ K GK+FEIACYKNK+I W+N E +ID+VLQ+H +FTN+SK
Sbjct: 5 LFQPINQVKFTNVAIVKYKYKGKKFEIACYKNKIIDWKNGTELNIDDVLQSHLIFTNISK 64
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMKDMSKI 96
G+ A K +L F ++D +ICK IL K +I
Sbjct: 65 GEIAKKSELNSCFQSDDNYKICKTILEKGTLQI 97
Score = 247 (92.0 bits), Expect = 4.6e-25, Sum P(2) = 4.6e-25
Identities = 42/76 (55%), Positives = 58/76 (76%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
+F P NQ++ TNVAIV+ K GK+FEIACYKNK+I W+N E +ID+VLQ+H +FTN+SK
Sbjct: 5 LFQPINQVKFTNVAIVKYKYKGKKFEIACYKNKIIDWKNGTELNIDDVLQSHLIFTNISK 64
Query: 156 GQAANKEDLKKAFNTN 171
G+ A K +L F ++
Sbjct: 65 GEIAKKSELNSCFQSD 80
Score = 110 (43.8 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
Identities = 28/87 (32%), Positives = 51/87 (58%)
Query: 373 QGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIH 432
+GTL++ N +ER+ E +KD+ I+ E +N +T P + +MIE+ +K I
Sbjct: 92 KGTLQISN--------KERAILKEKIYKDMIEILHEMSVNPQTGYPISTNMIESMVKNIG 143
Query: 433 FSVNVNKNSKQQALEE-DKTSGIYSSL 458
+S+N++ ++K+QAL+ D S Y +
Sbjct: 144 YSINIDDSAKKQALKVFDTLSKEYDDI 170
>UNIPROTKB|Q8ILY6 [details] [associations]
symbol:PF14_0107 "Putative uncharacterized protein"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR018978 Pfam:PF09377 GO:GO:0042254 EMBL:AE014187
KO:K14574 InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 PROSITE:PS01267
RefSeq:XP_001348280.1 ProteinModelPortal:Q8ILY6 IntAct:Q8ILY6
MINT:MINT-1560774 EnsemblProtists:PF14_0107:mRNA GeneID:811688
KEGG:pfa:PF14_0107 EuPathDB:PlasmoDB:PF3D7_1410900
HOGENOM:HOG000281345 OMA:DRENESM ProtClustDB:CLSZ2501021
Uniprot:Q8ILY6
Length = 638
Score = 294 (108.6 bits), Expect = 2.0e-23, P = 2.0e-23
Identities = 59/135 (43%), Positives = 93/135 (68%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
E +ID+VLQ+H +FTN+SKG+ A K +L F ++D +ICK IL KG LQIS+KER+
Sbjct: 46 ELNIDDVLQSHLIFTNISKGEIAKKSELNSCFQSDDNYKICKTILEKGTLQISNKERAIL 105
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
E +KD+ I+ E +N +T P + +MIE+ +K I +S+N++ ++K+QAL+V TL +
Sbjct: 106 KEKIYKDMIEILHEMSVNPQTGYPISTNMIESMVKNIGYSINIDDSAKKQALKVFDTLSK 165
Query: 303 CMS--IERAQMRVRV 315
I+RA MR+++
Sbjct: 166 EYDDIIQRAFMRIQI 180
Score = 282 (104.3 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
Identities = 50/93 (53%), Positives = 68/93 (73%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
+F P NQ++ TNVAIV+ K GK+FEIACYKNK+I W+N E +ID+VLQ+H +FTN+SK
Sbjct: 5 LFQPINQVKFTNVAIVKYKYKGKKFEIACYKNKIIDWKNGTELNIDDVLQSHLIFTNISK 64
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMKDMSKI 96
G+ A K +L F ++D +ICK IL K +I
Sbjct: 65 GEIAKKSELNSCFQSDDNYKICKTILEKGTLQI 97
Score = 247 (92.0 bits), Expect = 4.6e-25, Sum P(2) = 4.6e-25
Identities = 42/76 (55%), Positives = 58/76 (76%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
+F P NQ++ TNVAIV+ K GK+FEIACYKNK+I W+N E +ID+VLQ+H +FTN+SK
Sbjct: 5 LFQPINQVKFTNVAIVKYKYKGKKFEIACYKNKIIDWKNGTELNIDDVLQSHLIFTNISK 64
Query: 156 GQAANKEDLKKAFNTN 171
G+ A K +L F ++
Sbjct: 65 GEIAKKSELNSCFQSD 80
Score = 110 (43.8 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
Identities = 28/87 (32%), Positives = 51/87 (58%)
Query: 373 QGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIH 432
+GTL++ N +ER+ E +KD+ I+ E +N +T P + +MIE+ +K I
Sbjct: 92 KGTLQISN--------KERAILKEKIYKDMIEILHEMSVNPQTGYPISTNMIESMVKNIG 143
Query: 433 FSVNVNKNSKQQALEE-DKTSGIYSSL 458
+S+N++ ++K+QAL+ D S Y +
Sbjct: 144 YSINIDDSAKKQALKVFDTLSKEYDDI 170
>ASPGD|ASPL0000027277 [details] [associations]
symbol:AN5443 species:162425 "Emericella nidulans"
[GO:0042256 "mature ribosome assembly" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] InterPro:IPR018978 Pfam:PF09377
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:BN001305
GO:GO:0042273 EMBL:AACD01000094 GO:GO:0006364 eggNOG:COG1500
HOGENOM:HOG000216685 KO:K14574 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
OMA:NQPSNQI OrthoDB:EOG42VCRJ RefSeq:XP_663047.1
ProteinModelPortal:Q5B1Y7 STRING:Q5B1Y7
EnsemblFungi:CADANIAT00003646 GeneID:2871732 KEGG:ani:AN5443.2
Uniprot:Q5B1Y7
Length = 343
Score = 223 (83.6 bits), Expect = 7.7e-23, Sum P(3) = 7.7e-23
Identities = 45/86 (52%), Positives = 61/86 (70%)
Query: 7 PTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQA 66
P+NQI+ TNV++VR+KK KRFE+ACYKNK++ +R+ EKD+D VLQ T+F +VSK Q
Sbjct: 6 PSNQIKFTNVSVVRLKKGKKRFELACYKNKLLEYRSGAEKDLDNVLQVPTIFLSVSKAQT 65
Query: 67 ANKEDLKKAFNTEDQT-EICKLILMK 91
A +L KAF + EI + IL K
Sbjct: 66 APAAELIKAFGPDTPADEIRQEILRK 91
Score = 217 (81.4 bits), Expect = 6.4e-22, Sum P(3) = 6.4e-22
Identities = 40/70 (57%), Positives = 54/70 (77%)
Query: 99 PTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQA 158
P+NQI+ TNV++VR+KK KRFE+ACYKNK++ +R+ EKD+D VLQ T+F +VSK Q
Sbjct: 6 PSNQIKFTNVSVVRLKKGKKRFELACYKNKLLEYRSGAEKDLDNVLQVPTIFLSVSKAQT 65
Query: 159 ANKEDLKKAF 168
A +L KAF
Sbjct: 66 APAAELIKAF 75
Score = 185 (70.2 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 52/132 (39%), Positives = 71/132 (53%)
Query: 150 FTNVSKGQAAN-KEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKE 208
FTNVS + K+ + A N L S EKD+D VLQ T+F +VSK Q A
Sbjct: 12 FTNVSVVRLKKGKKRFELACYKNKL--LEYRSGAEKDLDNVLQVPTIFLSVSKAQTAPAA 69
Query: 209 DLKKAFNTEDQT-EICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPF 267
+L KAF + EI + IL KGE+Q+ ++ER E K++ IVS + I+ TKR +
Sbjct: 70 ELIKAFGPDTPADEIRQEILRKGEVQVGERERKEIAERIEKEVLDIVSGRLIDPTTKRVY 129
Query: 268 TVSMIEAGLKQI 279
T MI L Q+
Sbjct: 130 TPGMISKALDQL 141
Score = 88 (36.0 bits), Expect = 7.7e-23, Sum P(3) = 7.7e-23
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 377 ELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQI 431
E+L EV GE ER E K++ IVS + I+ TKR +T MI L Q+
Sbjct: 87 EILRKGEVQVGERERKEIAERIEKEVLDIVSGRLIDPTTKRVYTPGMISKALDQL 141
Score = 78 (32.5 bits), Expect = 9.5e-21, Sum P(2) = 9.5e-21
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 337 SVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNL 381
S+E++E + ++ +PG ++ ++E V ETRG+G +E+L++
Sbjct: 293 SIESQEIASDEWEVVGFAEPGAFKGLNEFVGNETRGRGRVEVLDM 337
Score = 71 (30.1 bits), Expect = 5.1e-20, Sum P(2) = 5.1e-20
Identities = 23/73 (31%), Positives = 33/73 (45%)
Query: 277 KQIHFSVNVNKNSKQQALEVIPTLK--QCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXC 334
K + VN NK++K ALE + L Q + + RA+MR+RV
Sbjct: 175 KPLWTGVNPNKSAKSLALEAMKALIAWQPIPVMRARMRLRVTCPVSLLKQSVKSAAPAG- 233
Query: 335 ATSVENEEWSGGG 347
+ + E E SGGG
Sbjct: 234 SNNKEKESQSGGG 246
Score = 40 (19.1 bits), Expect = 7.7e-23, Sum P(3) = 7.7e-23
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 429 KQIHFSVNVNKNSKQQALEEDK 450
K + VN NK++K ALE K
Sbjct: 175 KPLWTGVNPNKSAKSLALEAMK 196
>UNIPROTKB|Q5B1Y7 [details] [associations]
symbol:AN5443.2 "UPF0023 family protein (AFU_orthologue;
AFUA_6G13530)" species:227321 "Aspergillus nidulans FGSC A4"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006364
"rRNA processing" evidence=ISS] [GO:0042273 "ribosomal large
subunit biogenesis" evidence=ISS] InterPro:IPR018978 Pfam:PF09377
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:BN001305
GO:GO:0042273 EMBL:AACD01000094 GO:GO:0006364 eggNOG:COG1500
HOGENOM:HOG000216685 KO:K14574 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
OMA:NQPSNQI OrthoDB:EOG42VCRJ RefSeq:XP_663047.1
ProteinModelPortal:Q5B1Y7 STRING:Q5B1Y7
EnsemblFungi:CADANIAT00003646 GeneID:2871732 KEGG:ani:AN5443.2
Uniprot:Q5B1Y7
Length = 343
Score = 223 (83.6 bits), Expect = 7.7e-23, Sum P(3) = 7.7e-23
Identities = 45/86 (52%), Positives = 61/86 (70%)
Query: 7 PTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQA 66
P+NQI+ TNV++VR+KK KRFE+ACYKNK++ +R+ EKD+D VLQ T+F +VSK Q
Sbjct: 6 PSNQIKFTNVSVVRLKKGKKRFELACYKNKLLEYRSGAEKDLDNVLQVPTIFLSVSKAQT 65
Query: 67 ANKEDLKKAFNTEDQT-EICKLILMK 91
A +L KAF + EI + IL K
Sbjct: 66 APAAELIKAFGPDTPADEIRQEILRK 91
Score = 217 (81.4 bits), Expect = 6.4e-22, Sum P(3) = 6.4e-22
Identities = 40/70 (57%), Positives = 54/70 (77%)
Query: 99 PTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQA 158
P+NQI+ TNV++VR+KK KRFE+ACYKNK++ +R+ EKD+D VLQ T+F +VSK Q
Sbjct: 6 PSNQIKFTNVSVVRLKKGKKRFELACYKNKLLEYRSGAEKDLDNVLQVPTIFLSVSKAQT 65
Query: 159 ANKEDLKKAF 168
A +L KAF
Sbjct: 66 APAAELIKAF 75
Score = 185 (70.2 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 52/132 (39%), Positives = 71/132 (53%)
Query: 150 FTNVSKGQAAN-KEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKE 208
FTNVS + K+ + A N L S EKD+D VLQ T+F +VSK Q A
Sbjct: 12 FTNVSVVRLKKGKKRFELACYKNKL--LEYRSGAEKDLDNVLQVPTIFLSVSKAQTAPAA 69
Query: 209 DLKKAFNTEDQT-EICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPF 267
+L KAF + EI + IL KGE+Q+ ++ER E K++ IVS + I+ TKR +
Sbjct: 70 ELIKAFGPDTPADEIRQEILRKGEVQVGERERKEIAERIEKEVLDIVSGRLIDPTTKRVY 129
Query: 268 TVSMIEAGLKQI 279
T MI L Q+
Sbjct: 130 TPGMISKALDQL 141
Score = 88 (36.0 bits), Expect = 7.7e-23, Sum P(3) = 7.7e-23
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 377 ELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQI 431
E+L EV GE ER E K++ IVS + I+ TKR +T MI L Q+
Sbjct: 87 EILRKGEVQVGERERKEIAERIEKEVLDIVSGRLIDPTTKRVYTPGMISKALDQL 141
Score = 78 (32.5 bits), Expect = 9.5e-21, Sum P(2) = 9.5e-21
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 337 SVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNL 381
S+E++E + ++ +PG ++ ++E V ETRG+G +E+L++
Sbjct: 293 SIESQEIASDEWEVVGFAEPGAFKGLNEFVGNETRGRGRVEVLDM 337
Score = 71 (30.1 bits), Expect = 5.1e-20, Sum P(2) = 5.1e-20
Identities = 23/73 (31%), Positives = 33/73 (45%)
Query: 277 KQIHFSVNVNKNSKQQALEVIPTLK--QCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXC 334
K + VN NK++K ALE + L Q + + RA+MR+RV
Sbjct: 175 KPLWTGVNPNKSAKSLALEAMKALIAWQPIPVMRARMRLRVTCPVSLLKQSVKSAAPAG- 233
Query: 335 ATSVENEEWSGGG 347
+ + E E SGGG
Sbjct: 234 SNNKEKESQSGGG 246
Score = 40 (19.1 bits), Expect = 7.7e-23, Sum P(3) = 7.7e-23
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 429 KQIHFSVNVNKNSKQQALEEDK 450
K + VN NK++K ALE K
Sbjct: 175 KPLWTGVNPNKSAKSLALEAMK 196
>UNIPROTKB|Q9UXC5 [details] [associations]
symbol:psmA "Proteasome alpha subunit (C-terminus)"
species:2287 "Sulfolobus solfataricus" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006364 "rRNA processing"
evidence=ISS] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=ISS] InterPro:IPR018978 Pfam:PF09377 GO:GO:0005634
GO:GO:0005737 GO:GO:0003723 GO:GO:0000502 GO:GO:0042273
GO:GO:0006364 EMBL:Y18930 InterPro:IPR009022 SUPFAM:SSF54980
KO:K14574 InterPro:IPR019783 InterPro:IPR002140 PANTHER:PTHR10927
Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291 PIR:B90222
RefSeq:NP_342243.1 ProteinModelPortal:Q9UXC5 GeneID:1455000
KEGG:sso:SSO0737 ProtClustDB:PRK13760 Uniprot:Q9UXC5
Length = 233
Score = 203 (76.5 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 46/198 (23%), Positives = 101/198 (51%)
Query: 186 IDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIEN 245
+ +V+ + T++ +V KG A+ LKK F T D I K IL+KGEL ++ ++R +E
Sbjct: 39 LSDVVVSDTIYKDVKKGLKASPASLKKVFGTTDFETIVKEILLKGELPVTAEQRKEMLET 98
Query: 246 QFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMS 305
+ K I + ++ +T P + +E ++Q +++NK+ + QA++++ + + +
Sbjct: 99 KRKQIIDFIHRNAVDPKTNLPIPPTRLEMAMEQARIQIDLNKDVEAQAMQIVKEISKIIP 158
Query: 306 IERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICL-IDPGKYREIDE 364
I+ A+ + ++V + V+ W G LL L I G +++ +
Sbjct: 159 IKIARALLSIKVPSEYSSKVKSQLHNLG---EVKKANWLEDGTLLAELEIPAGAQQDVID 215
Query: 365 LVRTETRGQGTLELLNLK 382
+ + T+G+ +++L ++
Sbjct: 216 KLNSLTKGEVEVKVLQVR 233
Score = 114 (45.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 18 IVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 77
IV+ + G+RFEI + +++R+ + +V+ + T++ +V KG A+ LKK F
Sbjct: 9 IVKYESHGERFEILAKPKEALAFRSGKSISLSDVVVSDTIYKDVKKGLKASPASLKKVFG 68
Query: 78 TEDQTEICKLILMK 91
T D I K IL+K
Sbjct: 69 TTDFETIVKEILLK 82
Score = 94 (38.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 110 IVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 169
IV+ + G+RFEI + +++R+ + +V+ + T++ +V KG A+ LKK F
Sbjct: 9 IVKYESHGERFEILAKPKEALAFRSGKSISLSDVVVSDTIYKDVKKGLKASPASLKKVFG 68
Query: 170 T 170
T
Sbjct: 69 T 69
Score = 82 (33.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 16/71 (22%), Positives = 36/71 (50%)
Query: 377 ELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVN 436
E+L E+ E+R +E + K I + ++ +T P + +E ++Q ++
Sbjct: 78 EILLKGELPVTAEQRKEMLETKRKQIIDFIHRNAVDPKTNLPIPPTRLEMAMEQARIQID 137
Query: 437 VNKNSKQQALE 447
+NK+ + QA++
Sbjct: 138 LNKDVEAQAMQ 148
>UNIPROTKB|Q8TPX6 [details] [associations]
symbol:MA_1778 "Putative uncharacterized protein"
species:188937 "Methanosarcina acetivorans C2A" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006364 "rRNA processing"
evidence=ISS] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=ISS] InterPro:IPR018978 Pfam:PF09377 GO:GO:0005634
GO:GO:0005737 GO:GO:0003723 GO:GO:0042273 GO:GO:0006364
EMBL:AE010299 GenomeReviews:AE010299_GR InterPro:IPR009022
SUPFAM:SSF54980 eggNOG:COG1500 KO:K14574 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
TIGRFAMs:TIGR00291 OMA:DPYLARD ProtClustDB:PRK13760
RefSeq:NP_616704.1 ProteinModelPortal:Q8TPX6 SMR:Q8TPX6
GeneID:1473667 KEGG:mac:MA1778 BioCyc:MACE188937:GI2O-1838-MONOMER
Uniprot:Q8TPX6
Length = 230
Score = 189 (71.6 bits), Expect = 4.0e-14, P = 4.0e-14
Identities = 45/198 (22%), Positives = 91/198 (45%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
E +++++L T+F + ++G A + D+ +F T D EI +IL GELQ++ ++R
Sbjct: 36 EVNLEDILAVETIFEDANRGDRAAESDILNSFETTDPFEIAAVILKSGELQLTAEQRKRM 95
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
+E + K + +S IN +T+ P + IE +++ ++ K+ Q + ++
Sbjct: 96 LEEKKKKVIYTISRNAINPQTRAPHPPARIERAMEEAKVHIDPLKSVDQLVTITMKAIRP 155
Query: 303 CMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSG-GGLLLICLIDPGKYRE 361
+ I ++ + V++ T EEW G G + + I G +
Sbjct: 156 LIPIRFEEINIAVKIPPEYAPKAYGDISKVGTITK---EEWQGDGSWIAVVRIPAGVQTD 212
Query: 362 IDELVRTETRGQGTLELL 379
L+ T+G+ +LL
Sbjct: 213 FYALINHLTKGEAQTKLL 230
Score = 91 (37.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 14/68 (20%), Positives = 35/68 (51%)
Query: 103 IRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKE 162
+ + R+K+ K FE+ ++++ E +++++L T+F + ++G A +
Sbjct: 2 VSLDEAVTARLKRGSKHFEVLVEPEGALAYKRGEEVNLEDILAVETIFEDANRGDRAAES 61
Query: 163 DLKKAFNT 170
D+ +F T
Sbjct: 62 DILNSFET 69
Score = 64 (27.6 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 21/85 (24%), Positives = 38/85 (44%)
Query: 361 EIDELVRTETRGQGTLELLNLK--EVTEGEEERSSQIENQFKDIATIVSEKCINTETKRP 418
E D L ET + + LK E+ E+R +E + K + +S IN +T+ P
Sbjct: 60 ESDILNSFETTDPFEIAAVILKSGELQLTAEQRKRMLEEKKKKVIYTISRNAINPQTRAP 119
Query: 419 FTVSMIEAGLKQIHFSVNVNKNSKQ 443
+ IE +++ ++ K+ Q
Sbjct: 120 HPPARIERAMEEAKVHIDPLKSVDQ 144
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.128 0.350 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 465 452 0.00093 118 3 11 23 0.43 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 603 (64 KB)
Total size of DFA: 229 KB (2121 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 43.96u 0.11s 44.07t Elapsed: 00:00:02
Total cpu time: 43.98u 0.11s 44.09t Elapsed: 00:00:02
Start: Thu Aug 15 11:03:44 2013 End: Thu Aug 15 11:03:46 2013