RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1329
(465 letters)
>gnl|CDD|185627 PTZ00448, PTZ00448, hypothetical protein; Provisional.
Length = 373
Score = 172 bits (437), Expect = 3e-49
Identities = 100/272 (36%), Positives = 150/272 (55%), Gaps = 50/272 (18%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
+F P+NQI++TNVA+VR K GKRFE+ACYKNK+++WR+ +E D+DEVLQ T+F NVSK
Sbjct: 3 LFQPSNQIKLTNVAVVRYKSHGKRFEVACYKNKILNWRSGVEWDLDEVLQIRTIFANVSK 62
Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
GQ AN +DL F TN +I +
Sbjct: 63 GQLANSDDLNTVFGTN--SIDN-------------------------------------- 82
Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
ICK IL KGE+Q+S+ ERS ++ QF DI +++ +N + P +V +IE+
Sbjct: 83 ------ICKTILSKGEIQVSETERSYMLDKQFTDICHMLNRMTVNPKNNLPLSVKIIESE 136
Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCM--SIERAQMRVRVEVSAGVKDVKKLKEKLVK 333
LK FSV++NK +K+QAL+ LK+ + IERA+M ++ +S + + + + +KL +
Sbjct: 137 LKDSGFSVSLNKTTKEQALKAFDILKKRIPDQIERAKMMLK--LSVDIVNKQNITKKLNE 194
Query: 334 CATSVENEEWSGGGLLLICLIDPGKYREIDEL 365
+ E + L +P YREID+L
Sbjct: 195 FNVFPISSEEKHNTYSITFLCEPRYYREIDQL 226
Score = 115 bits (290), Expect = 1e-28
Identities = 52/88 (59%), Positives = 66/88 (75%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
+F P+NQI++TNVA+VR K GKRFE+ACYKNK+++WR+ +E D+DEVLQ T+F NVSK
Sbjct: 3 LFQPSNQIKLTNVAVVRYKSHGKRFEVACYKNKILNWRSGVEWDLDEVLQIRTIFANVSK 62
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ AN +DL F T ICK IL K
Sbjct: 63 GQLANSDDLNTVFGTNSIDNICKTILSK 90
Score = 55.0 bits (132), Expect = 4e-08
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 378 LLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNV 437
+L+ E+ E ERS ++ QF DI +++ +N + P +V +IE+ LK FSV++
Sbjct: 87 ILSKGEIQVSETERSYMLDKQFTDICHMLNRMTVNPKNNLPLSVKIIESELKDSGFSVSL 146
Query: 438 NKNSKQQALE 447
NK +K+QAL+
Sbjct: 147 NKTTKEQALK 156
>gnl|CDD|224417 COG1500, COG1500, Predicted exosome subunit [Translation, ribosomal
structure and biogenesis].
Length = 234
Score = 166 bits (422), Expect = 1e-48
Identities = 75/279 (26%), Positives = 127/279 (45%), Gaps = 50/279 (17%)
Query: 102 QIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANK 161
+ + + I R+KK G+RFE+ NK + +R E D++EVL T TVF + SKG+ A++
Sbjct: 1 MVSLDDAVIARLKKHGERFEVLVDPNKALEYREGKEVDLEEVLATETVFKDASKGEKASE 60
Query: 162 EDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTE 221
EDLKKAF T D E
Sbjct: 61 EDLKKAFGTT----------------------------------------------DPDE 74
Query: 222 ICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHF 281
I + IL KGE+Q++ ++R +E + + I I+S I+ +TK P + IE +++
Sbjct: 75 IAEEILKKGEIQLTAEQRREMLEEKKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKV 134
Query: 282 SVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENE 341
++ K++++Q EV+ L+ + I + +V V++ K L K ++ E
Sbjct: 135 HIDPFKSAEEQVQEVLKALRPIIPIRFERAKVAVKIPVEYAG--KAYGLLRKFG-EIKKE 191
Query: 342 EW-SGGGLLLICLIDPGKYREIDELVRTETRGQGTLELL 379
EW G + + I G E EL+ T+G+ ++L
Sbjct: 192 EWQEDGSWICVLEIPAGNQDEFYELLNELTKGEVQTKVL 230
Score = 102 bits (257), Expect = 5e-25
Identities = 38/82 (46%), Positives = 53/82 (64%)
Query: 10 QIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANK 69
+ + + I R+KK G+RFE+ NK + +R E D++EVL T TVF + SKG+ A++
Sbjct: 1 MVSLDDAVIARLKKHGERFEVLVDPNKALEYREGKEVDLEEVLATETVFKDASKGEKASE 60
Query: 70 EDLKKAFNTEDQTEICKLILMK 91
EDLKKAF T D EI + IL K
Sbjct: 61 EDLKKAFGTTDPDEIAEEILKK 82
Score = 54.2 bits (131), Expect = 3e-08
Identities = 19/87 (21%), Positives = 42/87 (48%)
Query: 361 EIDELVRTETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFT 420
++ + T + E+L E+ E+R +E + + I I+S I+ +TK P
Sbjct: 62 DLKKAFGTTDPDEIAEEILKKGEIQLTAEQRREMLEEKKRQIINIISRNAIDPQTKAPHP 121
Query: 421 VSMIEAGLKQIHFSVNVNKNSKQQALE 447
+ IE +++ ++ K++++Q E
Sbjct: 122 PARIEKAMEEAKVHIDPFKSAEEQVQE 148
>gnl|CDD|220213 pfam09377, SBDS_C, SBDS protein C-terminal domain. This family is
highly conserved in species ranging from archaea to
vertebrates and plants. The family contains several
Shwachman-Bodian-Diamond syndrome (SBDS) proteins from
both mouse and humans. Shwachman-Diamond syndrome is an
autosomal recessive disorder with clinical features that
include pancreatic exocrine insufficiency,
haematological dysfunction and skeletal abnormalities.
Members of this family play a role in RNA metabolism.
Length = 126
Score = 143 bits (363), Expect = 2e-41
Identities = 72/127 (56%), Positives = 93/127 (73%), Gaps = 5/127 (3%)
Query: 246 QFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTL--KQC 303
+F++IATIVS KC+N ETKRP+ +MIE LK++ FSV+ NK++K+QALEVI L KQ
Sbjct: 2 KFREIATIVSRKCVNPETKRPYPPTMIEKALKELGFSVDPNKSAKEQALEVIKKLQEKQI 61
Query: 304 MSIERAQMRVRVEVSAGVKDVKKLKEKLVK-CATSVENEEWSGGGLLLICLIDPGKYREI 362
+ I RA+MRVRV V VK KK+KEKL K VE EE SGGG L+ LI+PG +RE+
Sbjct: 62 IPIARAKMRVRVTVP--VKAAKKVKEKLKKLYEFKVEEEEESGGGWELVVLIEPGLFREL 119
Query: 363 DELVRTE 369
DEL++ E
Sbjct: 120 DELLKKE 126
Score = 79.2 bits (196), Expect = 8e-18
Identities = 30/50 (60%), Positives = 42/50 (84%)
Query: 398 QFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALE 447
+F++IATIVS KC+N ETKRP+ +MIE LK++ FSV+ NK++K+QALE
Sbjct: 2 KFREIATIVSRKCVNPETKRPYPPTMIEKALKELGFSVDPNKSAKEQALE 51
>gnl|CDD|129392 TIGR00291, RNA_SBDS, rRNA metabolism protein, SBDS family. This
protein family, possibly universal in both archaea and
eukaryotes, appears to be involved in (ribosomal) RNA
metabolism. Mutations in the human ortholog are
associated with Shwachman-Bodian-Diamond syndrome
[Protein synthesis, Other].
Length = 231
Score = 144 bits (365), Expect = 2e-40
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 50/273 (18%)
Query: 102 QIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANK 161
+ + N I R+KK G+RFE+ R IE D ++VL VF + SKG+ A++
Sbjct: 1 MVSLENAVIARLKKHGERFEVLVDPYLAADLREGIEVDFEDVLAIEEVFRDASKGEKASE 60
Query: 162 EDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTE 221
EDL+K F T D E
Sbjct: 61 EDLRKIFGTT----------------------------------------------DVDE 74
Query: 222 ICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHF 281
+ + I++KGE+Q++ ++R +E + I I+S IN +TK+P + IE L++
Sbjct: 75 VAEKIILKGEIQLTAEQRREMLEKKRNQIINIISRNTINPQTKKPHPPTRIEKALEEAKV 134
Query: 282 SVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENE 341
+++ K+ ++Q LE++ LKQ + I+ +M+V +++ + + E + +V E
Sbjct: 135 HIDIFKSVEEQVLEIVKALKQIIPIKFEKMKVAIKIPP--ERAGEAIEAISNFG-AVTPE 191
Query: 342 EWSG-GGLLLICLIDPGKYREIDELVRTETRGQ 373
EW G + + I G YR++ L+ +T+G
Sbjct: 192 EWQEDGSWICVGEIPSGNYRDLMTLLDKKTKGN 224
Score = 88.0 bits (218), Expect = 7e-20
Identities = 31/82 (37%), Positives = 47/82 (57%)
Query: 10 QIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANK 69
+ + N I R+KK G+RFE+ R IE D ++VL VF + SKG+ A++
Sbjct: 1 MVSLENAVIARLKKHGERFEVLVDPYLAADLREGIEVDFEDVLAIEEVFRDASKGEKASE 60
Query: 70 EDLKKAFNTEDQTEICKLILMK 91
EDL+K F T D E+ + I++K
Sbjct: 61 EDLRKIFGTTDVDEVAEKIILK 82
Score = 48.7 bits (116), Expect = 2e-06
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 383 EVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSK 442
E+ E+R +E + I I+S IN +TK+P + IE L++ +++ K+ +
Sbjct: 84 EIQLTAEQRREMLEKKRNQIINIISRNTINPQTKKPHPPTRIEKALEEAKVHIDIFKSVE 143
Query: 443 QQALE 447
+Q LE
Sbjct: 144 EQVLE 148
>gnl|CDD|189870 pfam01172, SBDS, Shwachman-Bodian-Diamond syndrome (SBDS)
protein. This family is highly conserved in species
ranging from archaea to vertebrates and plants. The
family contains several Shwachman-Bodian-Diamond
syndrome (SBDS) proteins from both mouse and humans.
Shwachman-Diamond syndrome is an autosomal recessive
disorder with clinical features that include pancreatic
exocrine insufficiency, haematological dysfunction and
skeletal abnormalities. It is characterized by bone
marrow failure and leukemia predisposition. Members of
this family play a role in RNA metabolism. In yeast
these proteins have been shown to be critical for the
release and recycling of the nucleolar shuttling factor
Tif6 from pre-60S ribosomes, a key step in 60S
maturation and translational activation of ribosomes.
This data links defective late 60S subunit maturation
to an inherited bone marrow failure syndrome associated
with leukemia predisposition.
Length = 91
Score = 118 bits (298), Expect = 2e-32
Identities = 49/78 (62%), Positives = 56/78 (71%)
Query: 14 TNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLK 73
TNV +VR KK GKRFEI Y NKV+ +RN E D+DEVLQ VFTN SKG+ A+KEDL+
Sbjct: 1 TNVVVVRYKKGGKRFEILVYPNKVLKYRNGKEIDLDEVLQVDKVFTNASKGERASKEDLE 60
Query: 74 KAFNTEDQTEICKLILMK 91
KAF T D EI K IL K
Sbjct: 61 KAFGTTDVEEIIKEILKK 78
Score = 111 bits (281), Expect = 5e-30
Identities = 55/134 (41%), Positives = 66/134 (49%), Gaps = 46/134 (34%)
Query: 106 TNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLK 165
TNV +VR KK GKRFEI Y NKV+ +RN
Sbjct: 1 TNVVVVRYKKGGKRFEILVYPNKVLKYRNG------------------------------ 30
Query: 166 KAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKL 225
+E D+DEVLQ VFTN SKG+ A+KEDL+KAF T D EI K
Sbjct: 31 ----------------KEIDLDEVLQVDKVFTNASKGERASKEDLEKAFGTTDVEEIIKE 74
Query: 226 ILMKGELQISDKER 239
IL KGELQ++ +ER
Sbjct: 75 ILKKGELQLTAEER 88
>gnl|CDD|237492 PRK13760, PRK13760, putative RNA-associated protein; Provisional.
Length = 231
Score = 101 bits (253), Expect = 2e-24
Identities = 51/199 (25%), Positives = 100/199 (50%), Gaps = 4/199 (2%)
Query: 183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
+ DI++VL VF + KG A++E LKK F T D EI + I+ KGE+Q++ ++R
Sbjct: 36 DVDIEDVLAVEEVFKDAKKGDKASEESLKKVFGTTDPLEIAEEIIKKGEIQLTAEQRREM 95
Query: 243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
+E + + I ++ IN +T P IE +++ ++ K+ ++Q +++ L+
Sbjct: 96 LEEKRRQIINFIARNAINPQTGLPHPPQRIENAMEEARVHIDPFKSVEEQVKDIVKALRP 155
Query: 303 CMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSG-GGLLLICLIDPGKYRE 361
+ I+ + R+ V++ + K +L K ++ EEW G + + I G E
Sbjct: 156 IIPIKFEKARIAVKIPP--EYAGKAYGELRKFGE-IKKEEWQSDGSWIAVLEIPAGLQNE 212
Query: 362 IDELVRTETRGQGTLELLN 380
+ + T+G+ ++L
Sbjct: 213 FYDKLNKLTKGEAETKVLK 231
Score = 67.2 bits (165), Expect = 9e-13
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 11 IRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKE 70
+ + + I R++ G+RFEI + + ++ + DI++VL VF + KG A++E
Sbjct: 2 VSLDDAVIARLESHGERFEILVDPDLALKFKEGKDVDIEDVLAVEEVFKDAKKGDKASEE 61
Query: 71 DLKKAFNTEDQTEICKLILMK 91
LKK F T D EI + I+ K
Sbjct: 62 SLKKVFGTTDPLEIAEEIIKK 82
Score = 34.0 bits (79), Expect = 0.096
Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 384 VTEGE-----EERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVN 438
+ +GE E+R +E + + I ++ IN +T P IE +++ ++
Sbjct: 80 IKKGEIQLTAEQRREMLEEKRRQIINFIARNAINPQTGLPHPPQRIENAMEEARVHIDPF 139
Query: 439 KNSKQQALE 447
K+ ++Q +
Sbjct: 140 KSVEEQVKD 148
>gnl|CDD|237824 PRK14824, PRK14824, putative deoxyribonucleotide triphosphate
pyrophosphatase; Provisional.
Length = 201
Score = 31.3 bits (71), Expect = 0.84
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 349 LLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEERSSQIENQFK 400
+L+ + GK REI L+ +E+L+ + E EE+ + +EN +
Sbjct: 3 ILLATTNEGKVREIKRLL-----SDLGIEVLSPDKKIEVEEDGETFLENAYL 49
>gnl|CDD|224653 COG1739, COG1739, Uncharacterized conserved protein [Function
unknown].
Length = 203
Score = 30.7 bits (70), Expect = 1.2
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 299 TLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGK 358
L+ +IE+ + V + + L+ L + VE +SGG +LL
Sbjct: 123 ALEAAEAIEK-KEAKANHVGCAYRILGLLERLLKQNDDDVEEARYSGGSVLLTVRFRHIV 181
Query: 359 YREIDELVRTETRGQGTLELLN 380
+ L++ G + +N
Sbjct: 182 IEAVSRLLKGNHIGPDRFKHIN 203
>gnl|CDD|226756 COG4306, COG4306, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 160
Score = 29.9 bits (67), Expect = 1.9
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 258 CINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ--------CMSIERA 309
C N ++ P+T I ++ + N+N + QQ + L + + ++
Sbjct: 71 CHNCGSRFPWTERKIAGAVELVEAGENLNPDEVQQFRTDLTDLTKDSPKTQVATLRFKKV 130
Query: 310 QMRVRVEVSAGVKDV 324
+V V++GV+D+
Sbjct: 131 MSKVATSVASGVRDI 145
>gnl|CDD|163664 cd07421, MPP_Rhilphs, Rhilph phosphatases, metallophosphatase
domain. Rhilphs (Rhizobiales/ Rhodobacterales/
Rhodospirillaceae-like phosphatases) are a
phylogenetically distinct group of PPP (phosphoprotein
phosphatases), found only in land plants. They are named
for their close relationship to to PPP phosphatases from
alpha-Proteobacteria, including Rhizobiales,
Rhodobacterales and Rhodospirillaceae. The PPP
(phosphoprotein phosphatase) family, to which the
Rhilphs belong, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and
ApA4 hydrolase. The PPP catalytic domain is defined by
three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).
The PPP enzyme family is ancient with members found in
all eukaryotes, and in most bacterial and archeal
genomes. Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 304
Score = 29.8 bits (67), Expect = 2.6
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 208 EDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFK 248
E+ TE+ + CKLI + L E+S+ +E Q K
Sbjct: 188 EEDDVCIETEEGLKHCKLIAVHAGL-----EKSNSVEEQLK 223
>gnl|CDD|221875 pfam12965, DUF3854, Domain of unknown function (DUF3854). A family
of uncharacterized proteins found by clustering human
gut metagenomic sequences. This domain is likely to be
related to the Toprim domain.
Length = 130
Score = 28.7 bits (65), Expect = 2.9
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 80 DQTEICKLILMKDMSKIFTPTNQIRM---------TNVAIVR-MKKAGKRFEIACYKNKV 129
+ I K L+ ++ TP +I + T + R + + GK E A K KV
Sbjct: 48 EGNRIGKRRLIPQLAAFATPGREIYICFDQDTKPKTIKNVNRAIVRLGKLLEEAGCKVKV 107
Query: 130 ISWRNNIEKDIDEVLQTH 147
I+W K +D+++ H
Sbjct: 108 ITWDPGPGKGVDDLIVAH 125
Score = 28.3 bits (64), Expect = 3.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 14 TNVAIVR-MKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTH 55
T + R + + GK E A K KVI+W K +D+++ H
Sbjct: 83 TIKNVNRAIVRLGKLLEEAGCKVKVITWDPGPGKGVDDLIVAH 125
>gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase. This model
describes 2-deoxy-D-gluconate 3-dehydrogenase (also
called 2-keto-3-deoxygluconate oxidoreductase), a member
of the family of short-chain-alcohol dehydrogenases
(pfam00106). This protein has been characterized in
Erwinia chrysanthemi as an enzyme of pectin degradation
[Energy metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 248
Score = 29.0 bits (65), Expect = 4.5
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 137 EKDIDEVLQTH--TVFTNVSKGQAANKEDLKKAFNTNMLNISSLTSFR 182
EKD D+V+ + +VF QAA K LK+ ++NI+S+ SF+
Sbjct: 101 EKDWDDVMNVNLKSVFFLT---QAAAKHFLKQGRGGKIINIASMLSFQ 145
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 283
Score = 28.8 bits (65), Expect = 5.9
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 275 GLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDV 324
L + + K + L ++ L + +E A VR VSAG+ ++
Sbjct: 53 ALDTLQIEWTMTK---DEVLLILKNLLEKNGLENA--YVRFNVSAGIGEI 97
>gnl|CDD|238285 cd00515, HAM1, NTPase/HAM1. This family consists of the HAM1
protein and pyrophosphate-releasing xanthosine/ inosine
triphosphatase. HAM1 protects the cell against
mutagenesis by the base analog 6-N-hydroxylaminopurine
(HAP) in E. Coli and S. cerevisiae. A Ham1-related
protein from Methanococcus jannaschii is a novel NTPase
that has been shown to hydrolyze nonstandard nucleotides
such as XTP to XMP and ITP to IMP, but not the standard
nucleotides, in the presence of Mg or Mn ions. The
enzyme exists as a homodimer. The HAM1 protein may be
acting as an NTPase by hydrolyzing the HAP triphosphate.
Length = 183
Score = 27.9 bits (63), Expect = 9.5
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 356 PGKYREIDELVRTETRGQGTLELLNLKEVTEGEEERSSQIEN 397
GK +E E++ +E+++LK++ + EE S+ EN
Sbjct: 8 KGKLKEFKEIL-----APFGIEVVSLKDIIDIEETGSTFEEN 44
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.128 0.349
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,213,295
Number of extensions: 2111657
Number of successful extensions: 1505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1495
Number of HSP's successfully gapped: 46
Length of query: 465
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 365
Effective length of database: 6,502,202
Effective search space: 2373303730
Effective search space used: 2373303730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (27.2 bits)