RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1329
(465 letters)
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure,
RNA-interacting protein mutation, phosphoprotein,
ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Length = 252
Score = 245 bits (627), Expect = 4e-79
Identities = 160/295 (54%), Positives = 202/295 (68%), Gaps = 49/295 (16%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+
Sbjct: 5 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSG-------------------- 44
Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
EKD+DEVLQTH+VF NVSKGQ A KEDL AF
Sbjct: 45 --------------------------VEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFG 78
Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
T+DQTEICK IL KGE+Q+SDKER +Q+E F+DIATIV++KC+N ETKRP+TV +IE
Sbjct: 79 TDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERA 138
Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCA 335
+K IH+SV NK++KQQALEVI LK+ M IERA MR+R + + KKLKEKL
Sbjct: 139 MKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPV--NEGKKLKEKLKPLI 196
Query: 336 TSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEE 390
+E+E++ G L ++CLIDPG +REIDEL++ ET+G+G+LE+LNLK+V EG+E+
Sbjct: 197 KVIESEDY-GQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDEK 250
Score = 122 bits (306), Expect = 5e-32
Identities = 69/88 (78%), Positives = 78/88 (88%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +EKD+DEVLQTH+VF NVSK
Sbjct: 5 IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSK 64
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
GQ A KEDL AF T+DQTEICK IL K
Sbjct: 65 GQVAKKEDLISAFGTDDQTEICKQILTK 92
Score = 66.6 bits (162), Expect = 1e-12
Identities = 40/87 (45%), Positives = 61/87 (70%)
Query: 361 EIDELVRTETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFT 420
++ T+ + + ++L EV ++ER +Q+E F+DIATIV++KC+N ETKRP+T
Sbjct: 72 DLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYT 131
Query: 421 VSMIEAGLKQIHFSVNVNKNSKQQALE 447
V +IE +K IH+SV NK++KQQALE
Sbjct: 132 VILIERAMKDIHYSVKTNKSTKQQALE 158
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome
protein orthologue, unknown function; 1.90A
{Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2
d.58.11.3 PDB: 1p9q_C
Length = 240
Score = 239 bits (610), Expect = 9e-77
Identities = 51/285 (17%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 96 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
+ + + + I R++K G+ FE+ +
Sbjct: 1 MHHHHHHVSLDKAVIARLRKGGEEFEVLVDPYLARDLKEG-------------------- 40
Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
+E + +++L VF + KG+ A+ ++L+K F
Sbjct: 41 --------------------------KEVNFEDLLAAEEVFKDAKKGERASVDELRKIFG 74
Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
T+D EI + I+++GE+QI+ ++R +E + K I +S I+ T P S IE
Sbjct: 75 TDDVFEIARKIILEGEVQITAEQRREMLEAKRKQIINFISRNTIDPRTNAPHPPSRIERA 134
Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCA 335
L++ +++ K+ + Q +++ LK + ++ +M + +++ + + L
Sbjct: 135 LEEAKVHIDIFKSVEAQVKDIVKALKPILPLKFEEMEIAIKIPP--EHTGRAISALYNFG 192
Query: 336 TSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLN 380
E G + + I G Y ++ +L+ +G+ ++L
Sbjct: 193 GVTREEWQRDGSWICVMRIPSGMYGDLMDLLGKVAKGEALTKVLR 237
Score = 117 bits (294), Expect = 2e-30
Identities = 21/88 (23%), Positives = 45/88 (51%)
Query: 4 IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 63
+ + + + I R++K G+ FE+ + E + +++L VF + K
Sbjct: 1 MHHHHHHVSLDKAVIARLRKGGEEFEVLVDPYLARDLKEGKEVNFEDLLAAEEVFKDAKK 60
Query: 64 GQAANKEDLKKAFNTEDQTEICKLILMK 91
G+ A+ ++L+K F T+D EI + I+++
Sbjct: 61 GERASVDELRKIFGTDDVFEIARKIILE 88
Score = 66.9 bits (163), Expect = 8e-13
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 383 EVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSK 442
EV E+R +E + K I +S I+ T P S IE L++ +++ K+ +
Sbjct: 90 EVQITAEQRREMLEAKRKQIINFISRNTIDPRTNAPHPPSRIERALEEAKVHIDIFKSVE 149
Query: 443 QQALE 447
Q +
Sbjct: 150 AQVKD 154
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog;
shwachman-bodian-diamond syndrome protein; 1.75A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 252
Score = 230 bits (587), Expect = 3e-73
Identities = 50/288 (17%), Positives = 109/288 (37%), Gaps = 49/288 (17%)
Query: 93 MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTN 152
+ ++ + + + I R++ G+RFE+ + +R
Sbjct: 12 SGLVPRGSHMVSLEDAVIARLESHGERFEVLVDPDLAAEFRRED---------------- 55
Query: 153 VSKGQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKK 212
+ +++VL VF + KG A++E ++K
Sbjct: 56 -----------------------------SDVSVEDVLAVQEVFRDARKGDKASEEAMRK 86
Query: 213 AFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMI 272
F T D E+ +IL +G +Q++ ++R IE++ I ++ + IN + P I
Sbjct: 87 VFETADPLEVTPVILRRGTIQLTAEQRRQMIEDKRLKIINKIAREAINPQNGLPHPPKRI 146
Query: 273 EAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLV 332
E +++ V+ K +Q V+ ++ + I+ ++RV +++ + +
Sbjct: 147 EKAMEEARVHVDPFKTVDEQVNIVLKAIRTKIPIKFEKVRVAIKIPG--EMAGSAYGVIS 204
Query: 333 KCATSVENEEWSGGGLLLICLIDPGKYR-EIDELVRTETRGQGTLELL 379
+ NEEW G + + PG + + + T G L+
Sbjct: 205 NFGK-ITNEEWQNDGSWIAVVEIPGGLQDSFYQKLSELTGGNVETRLI 251
Score = 116 bits (292), Expect = 4e-30
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNN-IEKDIDEVLQTHTVFT 59
+ ++ + + + I R++ G+RFE+ + +R + +++VL VF
Sbjct: 12 SGLVPRGSHMVSLEDAVIARLESHGERFEVLVDPDLAAEFRREDSDVSVEDVLAVQEVFR 71
Query: 60 NVSKGQAANKEDLKKAFNTEDQTEICKLILMK 91
+ KG A++E ++K F T D E+ +IL +
Sbjct: 72 DARKGDKASEEAMRKVFETADPLEVTPVILRR 103
Score = 70.4 bits (172), Expect = 6e-14
Identities = 14/71 (19%), Positives = 28/71 (39%)
Query: 377 ELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVN 436
+L + E+R IE++ I ++ + IN + P IE +++ V+
Sbjct: 99 VILRRGTIQLTAEQRRQMIEDKRLKIINKIAREAINPQNGLPHPPKRIEKAMEEARVHVD 158
Query: 437 VNKNSKQQALE 447
K +Q
Sbjct: 159 PFKTVDEQVNI 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 5e-12
Identities = 82/569 (14%), Positives = 168/569 (29%), Gaps = 161/569 (28%)
Query: 18 IVRMKKAGKR----FEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLK 73
I+ K A F K + ++K ++EVL+ + F +S + E +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQE-----EMVQKFVEEVLRINYKFL-MSPIK---TEQRQ 104
Query: 74 KAFNTEDQTEICKLILMKDMSKIFTPTN--------QIR--------MTNVAIVRMKKAG 117
+ T E + L D +++F N ++R NV I + +G
Sbjct: 105 PSMMTRMYIE-QRDRLYND-NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 118 K---------RFEIACYKNKVISW----RNNIEKDIDEVLQT-HTVFTNVSKGQAANKED 163
K +++ C + I W N + + E+LQ ++ + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 164 LKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEIC 223
+K ++ + L + K + L V NV N + AFN C
Sbjct: 223 IKLRIHSIQAELRRL--LKSKPYENCL---LVLLNVQ-----NAKAWN-AFNLS-----C 266
Query: 224 KLILMKGELQISD--------KERSSQIENQF-KDIATIVSEKCINTETKR--------- 265
K++L Q++D D + K ++ +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 266 PFTVSMIEAGLKQIHFSVNVNKNSKQQALE-VIPTLKQCM-SIERAQMRVRVEVSAGV-- 321
P +S+I ++ + N K + + ++ + +E A+ R + V
Sbjct: 327 PRRLSIIAESIRD---GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFP 382
Query: 322 KDVKKLKEKLVK---CATSVENEEWSGGGLLLICLID----PGKYR--EIDELVRTETRG 372
+ L+ + L L++ I ++ +
Sbjct: 383 PSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 373 QGTL--ELLN-----------------------------LKEVTEGEEERSSQIENQFKD 401
+ L +++ LK + ER + F D
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI--EHPERMTLFRMVFLD 499
Query: 402 IATIVSEKCINTETKRPFTVSMI--------------------EAGLKQI-HFSVNVNKN 440
+ +K + T + S++ E + I F + +N
Sbjct: 500 FRFL-EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 441 ---SK-----QQALEEDKTSGIYSSLYKA 461
SK + AL + I+ +K
Sbjct: 559 LICSKYTDLLRIAL-MAEDEAIFEEAHKQ 586
Score = 64.5 bits (156), Expect = 5e-11
Identities = 67/452 (14%), Positives = 147/452 (32%), Gaps = 122/452 (26%)
Query: 55 HTVFTNVSKGQAANK-------EDLKKAFNTEDQTEICKLILMK-DMSKIF---TPTNQI 103
H + + Q K + F+ +D ++ K IL K ++ I +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 104 RMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKED 163
R+ F K + ++K ++EVL+ N +
Sbjct: 65 L-------RL------FWTLLSKQE-----EMVQKFVEEVLRI-------------NYKF 93
Query: 164 LKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFT--NVSKGQAANKEDLKKAFNTEDQTE 221
L T S +T + D + + VF NVS+ Q K L++A E +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQAL-LELRPA 150
Query: 222 ICKLIL--MKGELQISDKE-------RSSQIENQFKD-IATIVSEKCINTETKRPFTVSM 271
+++ + G S K S +++ + I + + C + E ++
Sbjct: 151 K-NVLIDGVLG----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE-------TV 198
Query: 272 IEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSA-----------G 320
+E L+++ + ++ N S+ I + I Q +R + +
Sbjct: 199 LEM-LQKLLYQIDPNWTSRSDHSSNIK-----LRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 321 VKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLN 380
V++ K + C LL +++++ + + T +L+ +
Sbjct: 253 VQNAKAWNAFNLSCKI------------LLTT-----RFKQVTDFLSAATTTHISLDHHS 295
Query: 381 LKEVTEGEEER--SSQIENQFKDIATIVSEKC-INTETKRPFTVSMIEAGLKQ----IHF 433
+T E + ++ + +D+ E N P +S+I ++
Sbjct: 296 -MTLTPDEVKSLLLKYLDCRPQDLP---REVLTTN-----PRRLSIIAESIRDGLATWDN 346
Query: 434 SVNVNKNSKQQALE---EDKTSGIYSSLYKAC 462
+VN + +E Y ++
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 7e-07
Identities = 55/314 (17%), Positives = 102/314 (32%), Gaps = 104/314 (33%)
Query: 131 SWRNNIEKDIDEVL-----QTHTVFTNVSKGQAANKEDLKKAFN--TNMLNISSLT-SFR 182
S+ ++ K I VL + + + N S + ++ L+ + ML+IS+LT
Sbjct: 291 SFFVSVRKAI-TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 183 EKDIDEV---L----QTHTVFTN------VSKGQAANKEDLK---------KAFNTEDQT 220
+ +++ L Q N VS G + L KA + DQ+
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVS-GPP---QSLYGLNLTLRKAKAPSGLDQS 405
Query: 221 EICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIH 280
+I ER + N+F +A+ PF H
Sbjct: 406 ------------RIPFSERKLKFSNRFLPVAS-------------PF------------H 428
Query: 281 FSVNVNKNSK--QQALEVIPT--LKQCMSIERAQMRVRVEVSAGVKDVKKLK----EKLV 332
S A ++I +K +S +++ V + D++ L E++V
Sbjct: 429 --------SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 333 KCATS--VENEEW----SGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTE 386
C V+ W ++ PG + L G G ++ +
Sbjct: 481 DCIIRLPVK---WETTTQFKATHILDF-GPGGASGLGVLTHRNKDGTG------VRVIVA 530
Query: 387 GEEERSSQIENQFK 400
G + + + FK
Sbjct: 531 GTLDINPDDDYGFK 544
Score = 45.0 bits (106), Expect = 4e-05
Identities = 51/326 (15%), Positives = 91/326 (27%), Gaps = 130/326 (39%)
Query: 18 IVRMKKAGKRFEIACYKNKVISWRNN-----IEKDIDEVLQTHTVFTNVSKGQAANKEDL 72
IV K K I R N E +D L+T +F + N+
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRI--RENYSAMIFETIVDGKLKTEKIFKEI------NEHST 1715
Query: 73 KKAFNTE----DQTEICKLILMKDMSKIFTPTNQIRM--TNVAIVR-MKKAG-----KRF 120
F +E T+ FT Q + A +K G F
Sbjct: 1716 SYTFRSEKGLLSATQ-------------FT---QPALTLMEKAAFEDLKSKGLIPADATF 1759
Query: 121 ------E---IACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQA---ANKEDLKKAF 168
E +A + V+S I+ +++ VF +G A D
Sbjct: 1760 AGHSLGEYAALASLAD-VMS--------IESLVEV--VFY---RGMTMQVAVPRDELGRS 1805
Query: 169 NTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILM 228
N M+ A N + +F+ E + + +
Sbjct: 1806 NYGMI------------------------------AINPGRVAASFSQEALQYVVERVGK 1835
Query: 229 K-GE-LQIS-DKERSSQIENQFKDIATIVS-EKCINTETKRPFTVSMIEAGLKQIHFSVN 284
+ G ++I + Q + + + L + N
Sbjct: 1836 RTGWLVEIVNYNVENQQY---------VAAGDL----------------RALDTV---TN 1867
Query: 285 VNKNSKQQALEVIPTLKQCMSIERAQ 310
V K Q +++I L++ +S+E +
Sbjct: 1868 VLNFIKLQKIDIIE-LQKSLSLEEVE 1892
Score = 40.8 bits (95), Expect = 0.001
Identities = 40/264 (15%), Positives = 70/264 (26%), Gaps = 135/264 (51%)
Query: 5 FTPTNQIRM--TNVAIVR-MKKAG-----KRF------E---IACYKNKVISWRNNIEKD 47
FT Q + A +K G F E +A + V+S
Sbjct: 1731 FT---QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD-VMS-------- 1778
Query: 48 IDEVLQTHTVF-------TNVSKGQ---------AANKEDLKKAFNTEDQTEICKLILMK 91
I+ +++ VF V + + A N + +F+ E + + +
Sbjct: 1779 IESLVEV--VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG-- 1834
Query: 92 DMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFT 151
K+ G EI Y
Sbjct: 1835 ----------------------KRTGWLVEIVNY-------------------------- 1846
Query: 152 NVSKGQ---AANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKE 208
NV Q A + L TN+LN + + ID + +
Sbjct: 1847 NVENQQYVAAGDLRALDTV--TNVLN-----FIKLQKID-----------IIE------- 1881
Query: 209 DLKKAFNTEDQTEICKLILMKGEL 232
L+K+ + E+ ++G L
Sbjct: 1882 -LQKSLSLEE---------VEGHL 1895
Score = 31.2 bits (70), Expect = 1.0
Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 24/102 (23%)
Query: 380 NLKEVTEG---EEERSSQIE--NQFKD-IATIVSEKCINTETKRPFTVSMIEAGLKQ--- 430
L E TEG ++E ++ E +F ++++V + ++ L +
Sbjct: 40 ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ------FDQVLNLCLTEFEN 93
Query: 431 -------IHFSVNVNKNSKQQALEEDKTSGIYSSLYKACKFS 465
IH ++ K ++ KT + + A +
Sbjct: 94 CYLEGNDIH-AL-AAKLLQENDTTLVKTKELIKNYITARIMA 133
>1nyn_A Hypothetical 12.0 kDa protein in NAM8-GAR1 intergenic region;
hypothetical protein, structural genomics, PSI; NMR
{Saccharomyces cerevisiae} SCOP: d.235.1.1
Length = 131
Score = 28.9 bits (64), Expect = 1.8
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 186 IDEVLQTHTVFTNVSKGQA------ANKEDLKKAFNTEDQT-EICKLILMKGELQISDKE 238
+ EV++ VFT A A+K ++ F + E+ LIL G+ +
Sbjct: 58 LSEVVELFEVFTPQDGRGAEGELGAASKAQVENEFGKGKKIEEVIDLILRNGKPNSTTSS 117
Query: 239 RSSQIEN 245
++ N
Sbjct: 118 LKTKGGN 124
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural
genomics, PSI, protein structure initiative; 1.70A
{Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Length = 256
Score = 29.0 bits (64), Expect = 2.7
Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 245 NQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCM 304
+D I++ + E F ++AG+ ++H S + S + ++
Sbjct: 165 IAHRDAPIIMAGAGVRAENLHHF----LDAGVLEVHSSAGAWQASPMRYRNQGLSMSSDE 220
Query: 305 SIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENE 341
+ + V V ++K + + +E+
Sbjct: 221 HADEYSRYI---VDGAA--VAEMKGIIERHQAKLEHH 252
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 4.8
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 34 KNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEI 84
K WR +KD++E Q + V K + N+ KAF + +I
Sbjct: 106 KVMEQEWREKAKKDLEEWNQRQS--EQVEKNKINNRIA-DKAFYQQPDADI 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.128 0.349
Gapped
Lambda K H
0.267 0.0403 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,523,301
Number of extensions: 383172
Number of successful extensions: 726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 712
Number of HSP's successfully gapped: 36
Length of query: 465
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 368
Effective length of database: 3,993,456
Effective search space: 1469591808
Effective search space used: 1469591808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.4 bits)