RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1329
         (465 letters)



>d1t95a2 d.235.1.2 (A:11-86) Hypothetical protein AF0491,
          N-terminal domain {Archaeon Archaeoglobus fulgidus
          [TaxId: 2234]}
          Length = 76

 Score =  105 bits (263), Expect = 2e-28
 Identities = 21/75 (28%), Positives = 39/75 (52%)

Query: 15 NVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKK 74
             I R++K G+ FE+          +   E + +++L    VF +  KG+ A+ ++L+K
Sbjct: 2  KAVIARLRKGGEEFEVLVDPYLARDLKEGKEVNFEDLLAAEEVFKDAKKGERASVDELRK 61

Query: 75 AFNTEDQTEICKLIL 89
           F T+D  EI + I+
Sbjct: 62 IFGTDDVFEIARKII 76



 Score = 90.5 bits (225), Expect = 4e-23
 Identities = 17/65 (26%), Positives = 33/65 (50%)

Query: 107 NVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKK 166
              I R++K G+ FE+          +   E + +++L    VF +  KG+ A+ ++L+K
Sbjct: 2   KAVIARLRKGGEEFEVLVDPYLARDLKEGKEVNFEDLLAAEEVFKDAKKGERASVDELRK 61

Query: 167 AFNTN 171
            F T+
Sbjct: 62  IFGTD 66


>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle
           domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 75

 Score = 97.4 bits (243), Expect = 1e-25
 Identities = 20/74 (27%), Positives = 40/74 (54%)

Query: 228 MKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNK 287
           ++GE+QI+ ++R   +E + K I   +S   I+  T  P   S IE  L++    +++ K
Sbjct: 1   LEGEVQITAEQRREMLEAKRKQIINFISRNTIDPRTNAPHPPSRIERALEEAKVHIDIFK 60

Query: 288 NSKQQALEVIPTLK 301
           + + Q  +++  LK
Sbjct: 61  SVEAQVKDIVKALK 74



 Score = 79.7 bits (197), Expect = 3e-19
 Identities = 17/65 (26%), Positives = 30/65 (46%)

Query: 383 EVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSK 442
           EV    E+R   +E + K I   +S   I+  T  P   S IE  L++    +++ K+ +
Sbjct: 4   EVQITAEQRREMLEAKRKQIINFISRNTIDPRTNAPHPPSRIERALEEAKVHIDIFKSVE 63

Query: 443 QQALE 447
            Q  +
Sbjct: 64  AQVKD 68


>d1nyna_ d.235.1.1 (A:) Hypothetical protein Yhr087W {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 111

 Score = 66.0 bits (161), Expect = 5e-14
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 183 EKDIDEVLQTHTVFTNVSKGQA------ANKEDLKKAFNT-EDQTEICKLILMKGELQIS 235
              + EV++   VFT      A      A+K  ++  F   +   E+  LIL  G+   +
Sbjct: 35  IGKLSEVVELFEVFTPQDGRGAEGELGAASKAQVENEFGKGKKIEEVIDLILRNGKPNST 94

Query: 236 DKERSSQIEN 245
                ++  N
Sbjct: 95  TSSLKTKGGN 104



 Score = 59.1 bits (143), Expect = 1e-11
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 11/85 (12%)

Query: 18 IVRMKKAGKRFEIACYK---NKVISWRNN-IEKDIDEVLQTHTVFTNVSKGQA------A 67
          + +    G+  ++  +      V  +  N     + EV++   VFT      A      A
Sbjct: 4  VTKYFYKGENTDLIVFAASEELVDEYLKNPSIGKLSEVVELFEVFTPQDGRGAEGELGAA 63

Query: 68 NKEDLKKAFNT-EDQTEICKLILMK 91
          +K  ++  F   +   E+  LIL  
Sbjct: 64 SKAQVENEFGKGKKIEEVIDLILRN 88


>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
           [TaxId: 3562]}
          Length = 172

 Score = 27.2 bits (60), Expect = 3.0
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 128 KVISWRN--NI---EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNMLNISSLTSFR 182
           KV+S RN  N+   +  ID V++   VF +        +   KK   T        T   
Sbjct: 74  KVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVV 133

Query: 183 EKDIDEVLQTHTVFTNVS 200
             + +      T+ +N S
Sbjct: 134 GVNEEGYTHADTIISNAS 151


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.128    0.349 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,578,581
Number of extensions: 72306
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 17
Length of query: 465
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 377
Effective length of database: 1,199,356
Effective search space: 452157212
Effective search space used: 452157212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.1 bits)