BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13291
(89 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In
A Putative Auto-Inhibition State
Length = 340
Score = 103 bits (258), Expect = 2e-23, Method: Composition-based stats.
Identities = 46/61 (75%), Positives = 51/61 (83%)
Query: 28 RITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMDTSLDKFYTK 87
RI TVN+QE KRLL DLDI MR+ DC TV FYGA+FREGDVWICME+MDTSLDKFY +
Sbjct: 83 RIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQ 142
Query: 88 V 88
V
Sbjct: 143 V 143
>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d)
Length = 290
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 51/61 (83%)
Query: 28 RITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMDTSLDKFYTK 87
RI TVN+QE KRLL DLDI MR+ DC TV FYGA+FREGDVWICME+MDTSLDKFY +
Sbjct: 39 RIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQ 98
Query: 88 V 88
V
Sbjct: 99 V 99
>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|B Chain B, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|C Chain C, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|D Chain D, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
Length = 316
Score = 96.7 bits (239), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 48/61 (78%)
Query: 28 RITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMDTSLDKFYTK 87
RI TVN+QE KRLL DLDI R+ DC TV FYGA+FREGDVWIC E+ DTSLDKFY +
Sbjct: 66 RIRATVNSQEQKRLLXDLDISXRTVDCPFTVTFYGALFREGDVWICXELXDTSLDKFYKQ 125
Query: 88 V 88
V
Sbjct: 126 V 126
>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|B Chain B, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|C Chain C, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALO|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Ternary Complex With Amp-Pnp And P38 Peptide
pdb|3VUT|A Chain A, Crystal Structures Of Non-Phosphorylated Map2k4
pdb|3VUT|B Chain B, Crystal Structures Of Non-Phosphorylated Map2k4
Length = 327
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 48/61 (78%)
Query: 28 RITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMDTSLDKFYTK 87
RI TV+ +E K+LL DLD+ MRSSDC + VQFYGA+FREGD WICME+M TS DKFY
Sbjct: 54 RIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKY 113
Query: 88 V 88
V
Sbjct: 114 V 114
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 34 NTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMDTSLDKFYTKV 88
N +E+KR+L DLD+ ++S DC + VQ +G DV+I ME+M T +K ++
Sbjct: 63 NKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELMGTCAEKLKKRM 117
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICME 75
M+ D H V++YG+ F+ D+WI ME
Sbjct: 78 MQQCDSPHVVKYYGSYFKNTDLWIVME 104
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMD-TSLDKFYTK 87
+ + + V FYGA + +G++ ICME MD SLD+ K
Sbjct: 61 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK 100
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent
Inhibitor Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMD-TSLDKFYTK 87
+ + + V FYGA + +G++ ICME MD SLD+ K
Sbjct: 58 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK 97
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMD-TSLDKFYTK 87
+ + + V FYGA + +G++ ICME MD SLD+ K
Sbjct: 77 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK 116
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMD-TSLDKFYTK 87
+ + + V FYGA + +G++ ICME MD SLD+ K
Sbjct: 58 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK 97
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMD-TSLDKFYTK 87
+ + + V FYGA + +G++ ICME MD SLD+ K
Sbjct: 120 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK 159
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And
Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And
Mgatp
Length = 328
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMD-TSLDKFYTK 87
+ + + V FYGA + +G++ ICME MD SLD+ K
Sbjct: 58 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK 97
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMD-TSLDKFYTK 87
+ + + V FYGA + +G++ ICME MD SLD+ K
Sbjct: 58 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK 97
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMD-TSLDKFYTK 87
+ + + V FYGA + +G++ ICME MD SLD+ K
Sbjct: 85 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK 124
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMD-TSLDKFYTK 87
+ + + V FYGA + +G++ ICME MD SLD+ K
Sbjct: 58 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK 97
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 33.5 bits (75), Expect = 0.028, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMD-TSLDK 83
+ + + V FYGA + +G++ ICME MD SLD+
Sbjct: 68 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQ 103
>pdb|1ZXF|A Chain A, Solution Structure Of A Self-Sacrificing Resistance
Protein, Calc From Micromonospora Echinospora
pdb|2GKD|A Chain A, Structural Insight Into Self-Sacrifice Mechanism Of
Enediyne Resistance
pdb|2L65|A Chain A, Haddock Calculated Model Of The Complex Of The Resistance
Protein Calc And Calicheamicin-Gamma
Length = 155
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 15 GLARLDPDSEWSFRITFTVNTQEHKRL 41
G R+DPD+ F +TF + Q+ R+
Sbjct: 85 GFGRIDPDNSSEFTVTFVADGQKKTRV 111
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 52 SDCAHTVQFYGAMFREGDVWICMEVMDTSLDKFYTKVD 89
S CAH Q+ G V + E M SL F+T D
Sbjct: 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRD 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.137 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,407,089
Number of Sequences: 62578
Number of extensions: 69273
Number of successful extensions: 263
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 18
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)