RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13291
(89 letters)
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition
state, activation helix, serine/threonine-PR kinase;
HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Length = 340
Score = 99.8 bits (249), Expect = 5e-27
Identities = 46/61 (75%), Positives = 51/61 (83%)
Query: 28 RITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMDTSLDKFYTK 87
RI TVN+QE KRLL DLDI MR+ DC TV FYGA+FREGDVWICME+MDTSLDKFY +
Sbjct: 83 RIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQ 142
Query: 88 V 88
V
Sbjct: 143 V 143
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant,
structural genomics consortium, SCG, binding,
nucleotide-binding, phosphoprotein; HET: STU; 2.26A
{Homo sapiens} PDB: 3enm_A
Length = 290
Score = 98.5 bits (246), Expect = 6e-27
Identities = 46/61 (75%), Positives = 51/61 (83%)
Query: 28 RITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMDTSLDKFYTK 87
RI TVN+QE KRLL DLDI MR+ DC TV FYGA+FREGDVWICME+MDTSLDKFY +
Sbjct: 39 RIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQ 98
Query: 88 V 88
V
Sbjct: 99 V 99
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP
complex, transferase; HET: ANP; 2.30A {Homo sapiens}
PDB: 3alo_A*
Length = 327
Score = 92.0 bits (229), Expect = 3e-24
Identities = 41/61 (67%), Positives = 48/61 (78%)
Query: 28 RITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMDTSLDKFYTK 87
RI TV+ +E K+LL DLD+ MRSSDC + VQFYGA+FREGD WICME+M TS DKFY
Sbjct: 54 RIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKY 113
Query: 88 V 88
V
Sbjct: 114 V 114
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7,
activated mutant, ATP-binding, structural genomics,
NPPSFA; 2.45A {Homo sapiens}
Length = 318
Score = 89.0 bits (221), Expect = 4e-23
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 28 RITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMDTSLDKFYTK 87
++ + N +E+KR+L DLD+ ++S DC + VQ +G DV+I ME+M T +K +
Sbjct: 57 QMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELMGTCAEKLKKR 116
Query: 88 V 88
+
Sbjct: 117 M 117
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase,
ATP-binding, disease mutation, nucleoti binding,
phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB:
3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A*
2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A*
3orn_A* 3os3_A* 3sls_A* 1s9i_A*
Length = 360
Score = 79.1 bits (195), Expect = 3e-19
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 28 RITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMDT-SLDKFYT 86
I + +++ +L + + + + V FYGA + +G++ ICME MD SLD+
Sbjct: 65 LIHLEIKPAIRNQIIRELQV-LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK 123
Query: 87 KV 88
K
Sbjct: 124 KA 125
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A
{Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Length = 348
Score = 39.7 bits (93), Expect = 2e-05
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMDTSL 81
++ +T+Q+ G RE W+ ME S
Sbjct: 108 LQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSA 140
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI,
structural genomics, protein structure initiative; HET:
TPO; 2.20A {Homo sapiens}
Length = 314
Score = 39.3 bits (92), Expect = 3e-05
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMD 78
M+ D H V++YG+ F+ D+WI ME
Sbjct: 78 MQQCDSPHVVKYYGSYFKNTDLWIVMEYCG 107
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding,
cell cycle progression, phosphorylation, disease
mutation, nucleotide- binding; HET: 274; 2.0A {Homo
sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A*
2uv2_A*
Length = 302
Score = 38.8 bits (91), Expect = 5e-05
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMD 78
+ + D + V+ GA + +G +WI +E
Sbjct: 70 LATCDHPYIVKLLGAYYHDGKLWIMIEFCP 99
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding,
phosphorylation, allosteric enzyme, alternative
splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A
{Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A*
1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Length = 297
Score = 38.8 bits (91), Expect = 5e-05
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 33 VNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMD 78
+ Q K L+ + + MR + + V + + ++W+ ME +
Sbjct: 55 LQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLA 100
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding,
transferase, nucleotide-binding; HET: SEP; 1.6A {Homo
sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A*
2bva_A*
Length = 321
Score = 38.5 bits (90), Expect = 8e-05
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMD 78
MR + V+ Y + ++W+ ME +
Sbjct: 96 MRDYQHFNVVEMYKSYLVGEELWVLMEFLQ 125
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast);
two-LOBE protein kinase fold, ATP-binding, nucleotid
binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens}
PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A*
3ggf_A* 2xik_A*
Length = 303
Score = 36.9 bits (86), Expect = 2e-04
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMD 78
+ D + ++YG+ ++ +WI ME +
Sbjct: 74 LSQCDSPYVTKYYGSYLKDTKLWIIMEYLG 103
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension,
transferase; HET: ANP; 2.15A {Homo sapiens} PDB:
3dak_A*
Length = 303
Score = 34.6 bits (80), Expect = 0.002
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMD 78
M + V +Y + + ++W+ M+++
Sbjct: 67 MSQCHHPNIVSYYTSFVVKDELWLVMKLLS 96
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat
protein, ADA protein, ATP-binding, cell cycle, kinase,
nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo
sapiens} PDB: 2wtk_B*
Length = 389
Score = 33.3 bits (76), Expect = 0.005
Identities = 3/31 (9%), Positives = 11/31 (35%)
Query: 48 CMRSSDCAHTVQFYGAMFREGDVWICMEVMD 78
+ + + V + + ++W+ M
Sbjct: 79 VSKLFNHPNIVPYRATFIADNELWVVTSFMA 109
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.007
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 5 KKKKKKKPELGLARLDPDSEWSFRITFTV 33
+K+ KK + L DS + I T+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein
kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Length = 326
Score = 32.0 bits (73), Expect = 0.013
Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 33 VNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFR------EGDVWICMEVMD 78
V E + + ++++ + S + +YGA + + +W+ ME
Sbjct: 59 VTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCG 110
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.081
Identities = 9/74 (12%), Positives = 18/74 (24%), Gaps = 32/74 (43%)
Query: 4 KKKKKKKKPELGLARLDPDSEWSFRITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGA 63
K E L L+P E++++ L +
Sbjct: 351 NCDKLTTIIESSLNVLEPA--------------EYRKMFDRL-----------------S 379
Query: 64 MFREGDVWICMEVM 77
+F I ++
Sbjct: 380 VFPP-SAHIPTILL 392
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 28.0 bits (63), Expect = 0.30
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMDT-SLDKF 84
++ + V+ G ++ ++I ME++ F
Sbjct: 166 LKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTF 202
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain,
kinase and RNAse function, ATP binding ssRNA
dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo
sapiens}
Length = 432
Score = 28.2 bits (63), Expect = 0.31
Identities = 4/42 (9%), Positives = 18/42 (42%)
Query: 46 DICMRSSDCAHTVQFYGAMFREGDVWICMEVMDTSLDKFYTK 87
+ S + + ++++ +I +E+ +L ++ +
Sbjct: 69 QLLRESDEHPNVIRYFCTEKDRQFQYIAIELCAATLQEYVEQ 110
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein
serine/threonine kinase, S based drug design, MAP3K14,
transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A*
4g3c_A 4dn5_A*
Length = 336
Score = 27.8 bits (62), Expect = 0.35
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 52 SDCAHT--VQFYGAMFREGDVWICME 75
+ + V YGA+ V I ME
Sbjct: 105 AGLSSPRIVPLYGAVREGPWVNIFME 130
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci
inhibitory kinase; structural genomics, structural
genomics consortium, SGC; 1.70A {Homo sapiens}
Length = 311
Score = 27.7 bits (62), Expect = 0.41
Identities = 8/54 (14%), Positives = 19/54 (35%)
Query: 34 NTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMDTSLDKFYTK 87
++ R L ++ + V+ A G +++ E+ SL +
Sbjct: 96 GPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELCGPSLQQHCEA 149
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET:
824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A*
3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Length = 289
Score = 27.7 bits (62), Expect = 0.41
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 34 NTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICME 75
+ + + L ++ +H V+++ A + + I E
Sbjct: 50 GSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQNE 91
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 27.4 bits (61), Expect = 0.63
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMDT-SLDKF 84
M+ + VQ G RE +I E M +L +
Sbjct: 270 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 306
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase;
HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A*
2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Length = 327
Score = 27.3 bits (61), Expect = 0.68
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 34 NTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMDT-SLDKF 84
+ Q+ L + I + + + V+ G + +I ME+M L F
Sbjct: 73 SEQDELDFLMEALI-ISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSF 123
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding,
glycoprotein, membrane, nucleotide-binding,
phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Length = 367
Score = 27.0 bits (60), Expect = 0.79
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 34 NTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMDT-SLDKF 84
+ Q+ L + I + + + V+ G + +I +E+M L F
Sbjct: 114 SEQDELDFLMEALI-ISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSF 164
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase
inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB:
3sxr_A*
Length = 268
Score = 26.8 bits (60), Expect = 0.84
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMDT-SLDKF 84
M V+FYG +E ++I E + L +
Sbjct: 57 MMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNY 93
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase,
4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3,
2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43;
1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A*
3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A*
1k2p_A
Length = 283
Score = 26.8 bits (60), Expect = 0.96
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMDT-SLDKF 84
M + VQ YG ++ ++I E M L +
Sbjct: 73 MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNY 109
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor,
ATP-binding, nucleotide-binding, oncogene, TRAN; HET:
B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A*
1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A*
3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A*
3oy3_A* 2hiw_A* 2v7a_A* ...
Length = 288
Score = 26.4 bits (59), Expect = 1.1
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 48 CMRSSDCAHTVQFYGAMFREGDVWICMEVMDT-SLDKF 84
M+ + VQ G RE +I E M +L +
Sbjct: 62 VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 99
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase,
metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Length = 295
Score = 26.5 bits (59), Expect = 1.3
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 52 SDCAHT--VQFYGAMFREGDVWICME 75
H VQ+ G+ G + I ME
Sbjct: 74 KHLKHKNIVQYLGSFSENGFIKIFME 99
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase,
ATP binding, phosphoryla transferase; HET: ATP; 1.75A
{Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Length = 289
Score = 26.5 bits (59), Expect = 1.3
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMDT-SLDKF 84
M H V YG + + E + SLD +
Sbjct: 66 MSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTY 102
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP
binding, phosphorylation, intracellular,
transferase-transferase inhibitor complex; HET: IAQ;
1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A*
3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A*
3mj1_A* 3mj2_A*
Length = 267
Score = 26.4 bits (59), Expect = 1.3
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMDT-SLDKF 84
M VQ YG + + + E M+ L +
Sbjct: 57 MMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDY 93
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase
domain, hormone-growth factor complex; 1.50A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A*
1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A*
3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A*
1gag_A* 1irk_A 3bu3_A* ...
Length = 322
Score = 26.5 bits (59), Expect = 1.3
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 34 NTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVM 77
+ +E L + + M+ +C H V+ G + + + ME+M
Sbjct: 68 SMRERIEFLNEASV-MKEFNCHHVVRLLGVVSQGQPTLVIMELM 110
>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase,
neurotrophic tyrosine kinase, receptor-related NTRKR2;
2.90A {Homo sapiens}
Length = 289
Score = 25.6 bits (57), Expect = 2.3
Identities = 4/37 (10%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMDT-SLDKF 84
+ V G + ++ + + L +F
Sbjct: 66 RARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEF 102
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2,
phosphorylation, transferase; HET: STU; 2.50A
{Arabidopsis thaliana} PDB: 3ppz_A*
Length = 309
Score = 25.3 bits (56), Expect = 2.5
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 58 VQFYGAMFREGDVWICMEVM 77
V F GA+ + ++ I E +
Sbjct: 97 VLFMGAVTQPPNLSIVTEYL 116
>3nre_A Aldose 1-epimerase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli}
Length = 291
Score = 25.5 bits (56), Expect = 2.6
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 15 GLARLDPDSEWSFRITFTV 33
L L P + ++ V
Sbjct: 270 DLIALAPGESTTSEMSLRV 288
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase;
HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Length = 333
Score = 25.4 bits (56), Expect = 2.9
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMDT-SLDKF 84
M + ++ G + + + I E M+ +LDKF
Sbjct: 100 MGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKF 136
>3os7_A Galactose mutarotase-like protein; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: PG4 TLA; 1.80A {Clostridium
acetobutylicum}
Length = 341
Score = 25.3 bits (55), Expect = 3.0
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 15 GLARLDPDSEWSFRITFTVNT 35
G L P+ WS +
Sbjct: 320 GFKTLKPNESWSGVCKLYIEN 340
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET;
nucleotide-binding, hirschsprung disease,
phosphorylation, disease mutation; HET: ACK; 2.00A {Homo
sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A*
2ivv_A*
Length = 314
Score = 25.3 bits (56), Expect = 3.3
Identities = 9/44 (20%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 34 NTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVM 77
+ E + LL++ ++ ++ + H ++ YGA ++G + + +E
Sbjct: 66 SPSELRDLLSEFNV-LKQVNHPHVIKLYGACSQDGPLLLIVEYA 108
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage
kinase, MLK family, MLK1 and MLK3 subtype selective
inhibitors; HET: VIN; 2.60A {Homo sapiens}
Length = 271
Score = 24.9 bits (55), Expect = 3.4
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 58 VQFYGAMFREGDVWICMEVM 77
+ G +E ++ + ME
Sbjct: 69 IALRGVCLKEPNLCLVMEFA 88
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor;
HET: V4Z; 2.75A {Homo sapiens}
Length = 329
Score = 25.0 bits (55), Expect = 3.8
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 34 NTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMDT-SLDKF 84
+ + + ++ + H V+F+G + + E M L++F
Sbjct: 83 SESARQDFQREAEL-LTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRF 133
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment,
structural genomics, mutant, structural genomics
consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB:
2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A
2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A*
2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Length = 373
Score = 25.0 bits (55), Expect = 3.9
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMDT-SLDKF 84
M D + ++ G + + V I E M+ SLD F
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF 136
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural
genomics consortium, SGC, PR kinase,
transferase-antibiotic complex; HET: STU GOL; 1.65A
{Homo sapiens}
Length = 310
Score = 25.0 bits (55), Expect = 4.0
Identities = 4/28 (14%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 58 VQFYGAMFREGDVWICMEVMDT-SLDKF 84
++F G ++++ + E + +L
Sbjct: 70 LKFIGVLYKDKRLNFITEYIKGGTLRGI 97
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis}
Length = 326
Score = 24.7 bits (54), Expect = 4.6
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 15 GLARLDPDSEWSFRITFTV 33
GL L+P E + + + T+
Sbjct: 303 GLQVLEPGEETTAKSSITI 321
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure
initiative, no structural genomics consortium, NESG,
SGR112, P73504_SYNY3; 2.55A {Synechocystis SP}
Length = 289
Score = 24.7 bits (54), Expect = 4.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 15 GLARLDPDSEWSFRITFTVNTQ 36
LA ++P S S + F V+T+
Sbjct: 268 QLAWVEPYSSRSAWVNFQVSTE 289
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET:
ATP; 3.46A {Homo sapiens}
Length = 319
Score = 24.6 bits (54), Expect = 5.5
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 58 VQFYGAMFREGDVWICMEVM 77
V F GA + I +
Sbjct: 92 VLFMGACMSPPHLAIITSLC 111
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.90A {Lactobacillus acidophilus}
Length = 307
Score = 24.5 bits (53), Expect = 6.6
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 15 GLARLDPDSEWSFRITFTVNTQE 37
G+ L P E+ + T ++
Sbjct: 273 GMNHLKPGKEFQAGFSMTYHSTT 295
>3v5q_A NT-3 growth factor receptor; kinase domain, kinase,
phosphorylation, transferase-transfer inhibitor
complex; HET: 0F4; 2.20A {Homo sapiens}
Length = 297
Score = 24.1 bits (53), Expect = 6.7
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVM 77
+ + H V+FYG + + E M
Sbjct: 71 LTNLQHEHIVKFYGVCGDGDPLIMVFEYM 99
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K
3jyv_K*
Length = 137
Score = 24.2 bits (53), Expect = 6.8
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 1 MKKKKKKKKKKPELGLA 17
M + + G+A
Sbjct: 1 MSNVVQARDNSQVFGVA 17
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Length = 325
Score = 24.2 bits (53), Expect = 7.3
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 49 MRSSDCAHTVQFYGAMFREGDVWICMEVMDT-SLDKF 84
M D + ++ G + R I E M+ SLD F
Sbjct: 104 MGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTF 140
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus
casei}
Length = 294
Score = 24.0 bits (52), Expect = 8.4
Identities = 2/20 (10%), Positives = 6/20 (30%)
Query: 15 GLARLDPDSEWSFRITFTVN 34
G L + + ++
Sbjct: 275 GNTTLSAGANKQLALKVELH 294
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding;
2.29A {Homo sapiens}
Length = 1128
Score = 23.9 bits (51), Expect = 9.1
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 3 KKKKKKKKKPELGLARLDPDSEWSFRITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYG 62
KK KK+ + G + S R V T K ++C + + +
Sbjct: 641 VNKKSKKQTGKKGEPEREKPGVESMRKNRLVVTNLDKLHTALSELCFSINYV-PNMVVWE 699
Query: 63 AMF 65
F
Sbjct: 700 HTF 702
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation,
signal transduction, MASS spectrometry, transferase;
2.05A {Rattus norvegicus} SCOP: d.144.1.7
Length = 343
Score = 23.8 bits (52), Expect = 9.8
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 36 QEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVM 77
+ + M D + V+ G + + E M
Sbjct: 92 DMQADFQREAAL-MAEFDNPNIVKLLGVCAVGKPMCLLFEYM 132
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.416
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,385,202
Number of extensions: 67166
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 56
Length of query: 89
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 32
Effective length of database: 5,110,296
Effective search space: 163529472
Effective search space used: 163529472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)