RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13291
(89 letters)
>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 311
Score = 33.2 bits (75), Expect = 0.002
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 28 RITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMD-TSLDKFYT 86
+ + + E + L+++L + + + V GA G + E L F
Sbjct: 60 MLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLR 119
Query: 87 K 87
+
Sbjct: 120 R 120
>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 325
Score = 33.2 bits (75), Expect = 0.002
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 28 RITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMD-TSLDKF 84
+ ++ E + L+++L + + + V GA G +++ E L +
Sbjct: 74 MLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNY 131
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein
kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 322
Score = 31.2 bits (70), Expect = 0.009
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 28 RITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMD-TSLDKFYT 86
I + +++ +L + + + + V FYGA + +G++ ICME MD SLD+
Sbjct: 38 LIHLEIKPAIRNQIIRELQV-LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK 96
Query: 87 K 87
K
Sbjct: 97 K 97
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 309
Score = 31.1 bits (70), Expect = 0.010
Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 27 FRITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMDTSLDKFY 85
+ + ++ + ++ ++ ++ +T+Q+ G RE W+ ME S
Sbjct: 48 MSYSGKQSNEKWQDIIKEVRF-LQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLL 105
>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human
(Homo sapiens) [TaxId: 9606]}
Length = 263
Score = 28.9 bits (64), Expect = 0.052
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 34 NTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMDT-SLDKFYTK 87
+ + + ++ M VQ YG + + + E M+ L +
Sbjct: 40 GAMSEEDFIEEAEV-MMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRT 93
>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo
sapiens) [TaxId: 9606]}
Length = 320
Score = 28.2 bits (62), Expect = 0.095
Identities = 2/52 (3%), Positives = 18/52 (34%)
Query: 27 FRITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMD 78
+ + + + + + + + + + + +++ ME ++
Sbjct: 35 LKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLN 86
>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain
{Caenorhabditis elegans, pjk4 [TaxId: 6239]}
Length = 350
Score = 28.1 bits (62), Expect = 0.12
Identities = 5/45 (11%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 34 NTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMD 78
+ + + + ++ M V + A + ++ + E M
Sbjct: 63 HESDKETVRKEIQT-MSVLRHPTLVNLHDAFEDDNEMVMIYEFMS 106
>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare
(Aplysia californica), twk43 [TaxId: 6500]}
Length = 352
Score = 27.7 bits (61), Expect = 0.15
Identities = 4/43 (9%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 36 QEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMD 78
+ + ++ I M + + A + ++ + +E +
Sbjct: 68 LDKYTVKNEISI-MNQLHHPKLINLHDAFEDKYEMVLILEFLS 109
>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 27.6 bits (61), Expect = 0.16
Identities = 6/44 (13%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 34 NTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVM 77
+ + ++ ++ + MR + + V + + ++W+ ME +
Sbjct: 57 QQPKKELIINEILV-MRENKNPNIVNYLDSYLVGDELWVVMEYL 99
>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 27.7 bits (61), Expect = 0.17
Identities = 6/51 (11%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 28 RITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMD 78
+ + + ++ I + + + V+FYG ++ +E
Sbjct: 37 IVDMKRAVDCPENIKKEICI-NKMLNHENVVKFYGHRREGNIQYLFLEYCS 86
>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 307
Score = 27.7 bits (61), Expect = 0.18
Identities = 4/51 (7%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 28 RITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMD 78
I + + ++ + + + V G +++ M+++
Sbjct: 41 CIAKKALEGKEGSMENEIAV-LHKIKHPNIVALDDIYESGGHLYLIMQLVS 90
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 263
Score = 26.9 bits (59), Expect = 0.26
Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 27 FRITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMD 78
+L +++I + ++ YG V++ +E
Sbjct: 39 LFKAQLEKAGVEHQLRREVEI-QSHLRHPNILRLYGYFHDATRVYLILEYAP 89
>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 27.0 bits (59), Expect = 0.30
Identities = 5/51 (9%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 28 RITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMD 78
R + + + ++ I ++ + + + + DV + +E++
Sbjct: 47 RTKSSRRGVSREDIEREVSI-LKEIQHPNVITLHEVYENKTDVILILELVA 96
>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 26.6 bits (58), Expect = 0.39
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 34 NTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMD 78
+ + + + M + VQ YG ++ ++I E M
Sbjct: 39 GSMSEDEFIEEAKV-MMNLSHEKLVQLYGVCTKQRPIFIITEYMA 82
>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein
kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 26.5 bits (58), Expect = 0.43
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 27 FRITFTVNTQEHKRLLTDLDICMRSSDCAHTVQFYGAMFREGDVWICMEVMD-TSLDKFY 85
+ + + + D+ M D V+ Y + ++ + L K+
Sbjct: 41 LEKRHIIKENKVPYVTRERDV-MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 99
Query: 86 TK 87
K
Sbjct: 100 RK 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.416
Gapped
Lambda K H
0.267 0.0570 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 352,130
Number of extensions: 13831
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 17
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)